RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780265|ref|YP_003064678.1| 30S ribosomal protein S7 [Candidatus Liberibacter asiaticus str. psy62] (156 letters) >3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (G:) Length = 155 Score = 177 bits (451), Expect = 5e-46 Identities = 72/155 (46%), Positives = 103/155 (66%) Query: 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60 MSRR + DP + + +V +N I+ GKKS+A I+Y A +++K + +P++ Sbjct: 1 MSRRGTVEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAVKKIQQKTETNPLS 60 Query: 61 LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120 + RQA+ VTP V+ RRVGG+ + VP EI S + +ALAIRWL+ AARKR M +L Sbjct: 61 VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGAARKRPGRNMAFKL 120 Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYR 155 E++DAA G AVRK+EETH++AEANRAF+H+R Sbjct: 121 SSELVDAAKGSGDAVRKKEETHRMAEANRAFAHFR 155 >3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 2qal_G* 1p6g_G 1p87_G 2aw7_G 2avy_G 2i2u_G 2i2p_G* 2qan_G* 2qb9_G* 2qbb_G* 2qbd_G ... (G:) Length = 179 Score = 175 bits (445), Expect = 2e-45 Identities = 80/156 (51%), Positives = 108/156 (69%) Query: 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60 M RRR R++LPDPKF ++AKF+N +M GKKS A SIVY A + + ++ K + Sbjct: 1 MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELE 60 Query: 61 LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120 F AL NV P EV++RRVGG+ Y VP E+ R ALA+RW++ AARKR + +M RL Sbjct: 61 AFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRL 120 Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156 E+ DAA N+G AV+KRE+ H++AEAN+AF+HYRW Sbjct: 121 ANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW 156 >3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} (S:) Length = 149 Score = 174 bits (442), Expect = 6e-45 Identities = 80/149 (53%), Positives = 110/149 (73%) Query: 8 VVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALI 67 + R++ PDP F D +VAK +N +M+ GKK++A IVYGAFD++ +K KKDP+ +FRQA+ Sbjct: 1 MGRQIPPDPVFGDVLVAKLINRVMWDGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVE 60 Query: 68 NVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDA 127 NV P EVR RRVGGA Y VP E+ R +LA+RW++ AAR + M ++L EII A Sbjct: 61 NVKPVLEVRPRRVGGATYQVPIEVQEPRRTSLALRWIVEAARAKKGRPMKEKLAEEIIAA 120 Query: 128 ANNRGVAVRKREETHKVAEANRAFSHYRW 156 NN G A++K+E+TH++AEANRAF+HYRW Sbjct: 121 YNNTGTAIKKKEDTHRMAEANRAFAHYRW 149 >1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} (A:) Length = 155 Score = 170 bits (433), Expect = 7e-44 Identities = 83/155 (53%), Positives = 104/155 (67%) Query: 2 SRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVAL 61 RR R+VLPDP ++ +V + +N I GKKS A I+Y AFD++ ++ KDP + Sbjct: 1 PRRGPVAKRDVLPDPIYNSKLVTRLINKIXIDGKKSKAQKILYTAFDIIRERTGKDPXEV 60 Query: 62 FRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLG 121 F QAL NV P EVR RRVGGA Y VP E+ R +L +RWL+ AR RNE T +RL Sbjct: 61 FEQALKNVXPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKTXEERLA 120 Query: 122 GEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156 EI DAANN G AV+KRE+THK AEAN+AF+HYRW Sbjct: 121 NEIXDAANNTGAAVKKREDTHKXAEANKAFAHYRW 155 >2noq_F L10A, 40S ribosomal protein S5; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1h_G (F:) Length = 150 Score = 155 bits (394), Expect = 2e-39 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 5/150 (3%) Query: 5 RRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQ 64 R A R + + M GKK AV I+ D++ ++P+ + Sbjct: 1 RYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVD 60 Query: 65 ALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKR---NETTMIDRLG 121 A+ N P+ + GGAA +++ R AI L + AR+ N T+ + L Sbjct: 61 AITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLA 120 Query: 122 GEIIDAANNRG--VAVRKREETHKVAEANR 149 E+I+AA A++K++E +VA++NR Sbjct: 121 EELINAAKGSSTSYAIKKKDELERVAKSNR 150 >2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (g:) Length = 204 Score = 153 bits (388), Expect = 9e-39 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 5/154 (3%) Query: 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60 S R A R + + M GKK + V IV AF+++ ++P+ Sbjct: 51 HSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQ 110 Query: 61 LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKR---NETTMI 117 + A+IN P+ + G +++ R AI L AR+ N T+ Sbjct: 111 VLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIA 170 Query: 118 DRLGGEIIDAANNRG--VAVRKREETHKVAEANR 149 + L E+I+AA A++K++E +VA++NR Sbjct: 171 ECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204 >1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} (A:) Length = 218 Score = 142 bits (360), Expect = 1e-35 Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 5/154 (3%) Query: 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60 R + KK A +V AF ++EK+ K+P+ Sbjct: 65 HIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQ 124 Query: 61 LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMI--- 117 + A+ N P+ + + GG Y V +I+ R +A+R + + A + T + Sbjct: 125 VLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFA 184 Query: 118 DRLGGEIIDAANN--RGVAVRKREETHKVAEANR 149 + L EII AAN + A K+ E ++AE++R Sbjct: 185 EALAEEIILAANKDPKSYAYSKKLEIERIAESSR 218 >1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} (A:) Length = 151 Score = 133 bits (336), Expect = 1e-32 Identities = 68/147 (46%), Positives = 105/147 (71%) Query: 10 REVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINV 69 R++ PD + D +V F+N IM GKK++A I Y A ++++K ++P+ +F+QA+ NV Sbjct: 5 RQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENV 64 Query: 70 TPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAAN 129 P+ EVR+RRVGGA Y VP E++ +R Q+LA+RWL+ AA +R E R+ E++DAA Sbjct: 65 KPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAE 124 Query: 130 NRGVAVRKREETHKVAEANRAFSHYRW 156 +G AV+K+E+ ++AEANRA++HYRW Sbjct: 125 GKGGAVKKKEDVERMAEANRAYAHYRW 151 >2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} (A:) Length = 262 Score = 28.9 bits (64), Expect = 0.35 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 9/70 (12%) Query: 75 VRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVA 134 R GGA Y G++ ++ ++ + T+M + ++++ G+ Sbjct: 70 ARRYTGGGAVYHDLGDLNF---------SVVRSSDDMDITSMFRTMNEAVVNSLRILGLD 120 Query: 135 VRKREETHKV 144 R E Sbjct: 121 ARPGELNDVS 130 >2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} (A:1-246) Length = 246 Score = 25.0 bits (54), Expect = 4.3 Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 9/65 (13%) Query: 75 VRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVA 134 R R GG Y G I +K + + + + + V Sbjct: 71 ARRRSGGGTVYHDMGNINL---------TFFTTKKKYDRMENLKLVVRALKAVHPHLDVQ 121 Query: 135 VRKRE 139 KR Sbjct: 122 ATKRF 126 >3ez0_A Uncharacterized protein with ferritin-like fold; YP_832262.1, protein of unknown function with ferritin-like fold, structural genomics; HET: UNL TLA; 2.33A {Arthrobacter SP} (A:78-225) Length = 148 Score = 24.4 bits (53), Expect = 7.1 Identities = 3/25 (12%), Positives = 13/25 (52%) Query: 6 RAVVREVLPDPKFSDFVVAKFMNAI 30 R V+ ++ + ++ + + +A+ Sbjct: 51 RDVIEQIQASDETTEVLRERLRSAL 75 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.134 0.381 Gapped Lambda K H 0.267 0.0583 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,172,516 Number of extensions: 48077 Number of successful extensions: 128 Number of sequences better than 10.0: 1 Number of HSP's gapped: 122 Number of HSP's successfully gapped: 24 Length of query: 156 Length of database: 4,956,049 Length adjustment: 81 Effective length of query: 75 Effective length of database: 2,217,844 Effective search space: 166338300 Effective search space used: 166338300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (23.7 bits)