RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780265|ref|YP_003064678.1| 30S ribosomal protein S7
[Candidatus Liberibacter asiaticus str. psy62]
         (156 letters)



>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach
           chloroplast ribosome, ribonucleoprotein particle,
           macromolecular complex; 9.40A {Spinacea oleracea} (G:)
          Length = 155

 Score =  177 bits (451), Expect = 5e-46
 Identities = 72/155 (46%), Positives = 103/155 (66%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           MSRR     +    DP + + +V   +N I+  GKKS+A  I+Y A   +++K + +P++
Sbjct: 1   MSRRGTVEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAVKKIQQKTETNPLS 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
           + RQA+  VTP   V+ RRVGG+ + VP EI S + +ALAIRWL+ AARKR    M  +L
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGAARKRPGRNMAFKL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYR 155
             E++DAA   G AVRK+EETH++AEANRAF+H+R
Sbjct: 121 SSELVDAAKGSGDAVRKKEETHRMAEANRAFAHFR 155


>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA
           complex, ribonucleoprotein, ribosomal protein,
           RNA-binding, rRNA-binding, antibiotic resistance; 3.19A
           {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U
           1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 2qal_G* 1p6g_G
           1p87_G 2aw7_G 2avy_G 2i2u_G 2i2p_G* 2qan_G* 2qb9_G*
           2qbb_G* 2qbd_G ... (G:)
          Length = 179

 Score =  175 bits (445), Expect = 2e-45
 Identities = 80/156 (51%), Positives = 108/156 (69%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           M RRR    R++LPDPKF   ++AKF+N +M  GKKS A SIVY A + + ++  K  + 
Sbjct: 1   MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELE 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
            F  AL NV P  EV++RRVGG+ Y VP E+   R  ALA+RW++ AARKR + +M  RL
Sbjct: 61  AFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
             E+ DAA N+G AV+KRE+ H++AEAN+AF+HYRW
Sbjct: 121 ANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW 156


>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell
           cycle, cell division, chaperone, isomerase, rotamase,
           ribonucleoprotein; 3.40A {Thermotoga maritima} (S:)
          Length = 149

 Score =  174 bits (442), Expect = 6e-45
 Identities = 80/149 (53%), Positives = 110/149 (73%)

Query: 8   VVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALI 67
           + R++ PDP F D +VAK +N +M+ GKK++A  IVYGAFD++ +K KKDP+ +FRQA+ 
Sbjct: 1   MGRQIPPDPVFGDVLVAKLINRVMWDGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVE 60

Query: 68  NVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDA 127
           NV P  EVR RRVGGA Y VP E+   R  +LA+RW++ AAR +    M ++L  EII A
Sbjct: 61  NVKPVLEVRPRRVGGATYQVPIEVQEPRRTSLALRWIVEAARAKKGRPMKEKLAEEIIAA 120

Query: 128 ANNRGVAVRKREETHKVAEANRAFSHYRW 156
            NN G A++K+E+TH++AEANRAF+HYRW
Sbjct: 121 YNNTGTAIKKKEDTHRMAEANRAFAHYRW 149


>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,;
           2.50A {Geobacillus stearothermophilus} (A:)
          Length = 155

 Score =  170 bits (433), Expect = 7e-44
 Identities = 83/155 (53%), Positives = 104/155 (67%)

Query: 2   SRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVAL 61
            RR     R+VLPDP ++  +V + +N I   GKKS A  I+Y AFD++ ++  KDP  +
Sbjct: 1   PRRGPVAKRDVLPDPIYNSKLVTRLINKIXIDGKKSKAQKILYTAFDIIRERTGKDPXEV 60

Query: 62  FRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLG 121
           F QAL NV P  EVR RRVGGA Y VP E+   R  +L +RWL+  AR RNE T  +RL 
Sbjct: 61  FEQALKNVXPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKTXEERLA 120

Query: 122 GEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
            EI DAANN G AV+KRE+THK AEAN+AF+HYRW
Sbjct: 121 NEIXDAANNTGAAVKKREDTHKXAEANKAFAHYRW 155


>2noq_F L10A, 40S ribosomal protein S5; IRES RNA, ribosome,
           translation, internal initiation; 7.30A {Saccharomyces
           cerevisiae} PDB: 1s1h_G (F:)
          Length = 150

 Score =  155 bits (394), Expect = 2e-39
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 5/150 (3%)

Query: 5   RRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQ 64
           R A  R         + +    M      GKK  AV I+    D++     ++P+ +   
Sbjct: 1   RYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVD 60

Query: 65  ALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKR---NETTMIDRLG 121
           A+ N  P+ +      GGAA     +++  R    AI  L + AR+    N  T+ + L 
Sbjct: 61  AITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLA 120

Query: 122 GEIIDAANNRG--VAVRKREETHKVAEANR 149
            E+I+AA       A++K++E  +VA++NR
Sbjct: 121 EELINAAKGSSTSYAIKKKDELERVAKSNR 150


>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S
           ribosomal subunit, ribosomal protein/RNA complex; 8.70A
           {Canis familiaris} (g:)
          Length = 204

 Score =  153 bits (388), Expect = 9e-39
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 5/154 (3%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
            S  R A  R         + +    M      GKK + V IV  AF+++     ++P+ 
Sbjct: 51  HSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQ 110

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKR---NETTMI 117
           +   A+IN  P+ +       G       +++  R    AI  L   AR+    N  T+ 
Sbjct: 111 VLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIA 170

Query: 118 DRLGGEIIDAANNRG--VAVRKREETHKVAEANR 149
           + L  E+I+AA       A++K++E  +VA++NR
Sbjct: 171 ECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204


>1iqv_A Ribosomal protein S7; RNA-binding, decoding center,
           helix-turn- helix, ribosome; 2.10A {Pyrococcus
           horikoshii} (A:)
          Length = 218

 Score =  142 bits (360), Expect = 1e-35
 Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 5/154 (3%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
               R            +                KK  A  +V  AF ++EK+  K+P+ 
Sbjct: 65  HIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQ 124

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMI--- 117
           +   A+ N  P+ +  +   GG  Y V  +I+  R   +A+R + + A  +   T +   
Sbjct: 125 VLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFA 184

Query: 118 DRLGGEIIDAANN--RGVAVRKREETHKVAEANR 149
           + L  EII AAN   +  A  K+ E  ++AE++R
Sbjct: 185 EALAEEIILAANKDPKSYAYSKKLEIERIAESSR 218


>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A
           {Thermus thermophilus} (A:)
          Length = 151

 Score =  133 bits (336), Expect = 1e-32
 Identities = 68/147 (46%), Positives = 105/147 (71%)

Query: 10  REVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINV 69
           R++ PD  + D +V  F+N IM  GKK++A  I Y A  ++++K  ++P+ +F+QA+ NV
Sbjct: 5   RQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENV 64

Query: 70  TPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAAN 129
            P+ EVR+RRVGGA Y VP E++ +R Q+LA+RWL+ AA +R E     R+  E++DAA 
Sbjct: 65  KPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAE 124

Query: 130 NRGVAVRKREETHKVAEANRAFSHYRW 156
            +G AV+K+E+  ++AEANRA++HYRW
Sbjct: 125 GKGGAVKKKEDVERMAEANRAYAHYRW 151


>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A
           {Thermoplasma acidophilum} (A:)
          Length = 262

 Score = 28.9 bits (64), Expect = 0.35
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 9/70 (12%)

Query: 75  VRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVA 134
            R    GGA Y   G++            ++ ++   + T+M   +   ++++    G+ 
Sbjct: 70  ARRYTGGGAVYHDLGDLNF---------SVVRSSDDMDITSMFRTMNEAVVNSLRILGLD 120

Query: 135 VRKREETHKV 144
            R  E     
Sbjct: 121 ARPGELNDVS 130


>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A
           {Bos taurus} (A:1-246)
          Length = 246

 Score = 25.0 bits (54), Expect = 4.3
 Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 9/65 (13%)

Query: 75  VRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVA 134
            R R  GG  Y   G I                 +K +    +  +   +     +  V 
Sbjct: 71  ARRRSGGGTVYHDMGNINL---------TFFTTKKKYDRMENLKLVVRALKAVHPHLDVQ 121

Query: 135 VRKRE 139
             KR 
Sbjct: 122 ATKRF 126


>3ez0_A Uncharacterized protein with ferritin-like fold;
          YP_832262.1, protein of unknown function with
          ferritin-like fold, structural genomics; HET: UNL TLA;
          2.33A {Arthrobacter SP} (A:78-225)
          Length = 148

 Score = 24.4 bits (53), Expect = 7.1
 Identities = 3/25 (12%), Positives = 13/25 (52%)

Query: 6  RAVVREVLPDPKFSDFVVAKFMNAI 30
          R V+ ++    + ++ +  +  +A+
Sbjct: 51 RDVIEQIQASDETTEVLRERLRSAL 75


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.322    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,172,516
Number of extensions: 48077
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 24
Length of query: 156
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 75
Effective length of database: 2,217,844
Effective search space: 166338300
Effective search space used: 166338300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)