RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780265|ref|YP_003064678.1| 30S ribosomal protein S7
[Candidatus Liberibacter asiaticus str. psy62]
(156 letters)
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle,
cell division, chaperone, isomerase, rotamase,
ribonucleoprotein; 3.40A {Thermotoga maritima}
Length = 149
Score = 192 bits (489), Expect = 4e-50
Identities = 80/147 (54%), Positives = 109/147 (74%)
Query: 10 REVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINV 69
R++ PDP F D +VAK +N +M+ GKK++A IVYGAFD++ +K KKDP+ +FRQA+ NV
Sbjct: 3 RQIPPDPVFGDVLVAKLINRVMWDGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVENV 62
Query: 70 TPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAAN 129
P EVR RRVGGA Y VP E+ R +LA+RW++ AAR + M ++L EII A N
Sbjct: 63 KPVLEVRPRRVGGATYQVPIEVQEPRRTSLALRWIVEAARAKKGRPMKEKLAEEIIAAYN 122
Query: 130 NRGVAVRKREETHKVAEANRAFSHYRW 156
N G A++K+E+TH++AEANRAF+HYRW
Sbjct: 123 NTGTAIKKKEDTHRMAEANRAFAHYRW 149
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G
3i1q_G 3i1s_G 3i1z_G 3i21_G 2qal_G* 1p6g_G 1p87_G 2aw7_G
2avy_G 2i2u_G 2i2p_G* 2qan_G* 2qb9_G* 2qbb_G* 2qbd_G ...
Length = 179
Score = 190 bits (485), Expect = 1e-49
Identities = 80/156 (51%), Positives = 108/156 (69%)
Query: 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
M RRR R++LPDPKF ++AKF+N +M GKKS A SIVY A + + ++ K +
Sbjct: 1 MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELE 60
Query: 61 LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
F AL NV P EV++RRVGG+ Y VP E+ R ALA+RW++ AARKR + +M RL
Sbjct: 61 AFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRL 120
Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
E+ DAA N+G AV+KRE+ H++AEAN+AF+HYRW
Sbjct: 121 ANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW 156
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A
{Geobacillus stearothermophilus} SCOP: a.75.1.1
Length = 155
Score = 189 bits (481), Expect = 3e-49
Identities = 85/154 (55%), Positives = 109/154 (70%)
Query: 3 RRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALF 62
RR R+VLPDP ++ +V + +N IM GKKS A I+Y AFD++ ++ KDP+ +F
Sbjct: 2 RRGPVAKRDVLPDPIYNSKLVTRLINKIMIDGKKSKAQKILYTAFDIIRERTGKDPMEVF 61
Query: 63 RQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGG 122
QAL NV P EVR RRVGGA Y VP E+ R +L +RWL+ AR RNE TM +RL
Sbjct: 62 EQALKNVMPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKTMEERLAN 121
Query: 123 EIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
EI+DAANN G AV+KRE+THK+AEAN+AF+HYRW
Sbjct: 122 EIMDAANNTGAAVKKREDTHKMAEANKAFAHYRW 155
>3ofp_G 30S ribosomal protein S7; protein biosynthesis, ribosomes, RNA,
tRNA, transfer, eryThr ketolide, macrolide, antibiotic,
EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_G*
2wwl_G 3ofo_G 2gy9_G 2gyb_G
Length = 150
Score = 188 bits (479), Expect = 5e-49
Identities = 75/150 (50%), Positives = 103/150 (68%)
Query: 3 RRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALF 62
RRR R++LPDPKF ++AKF+N +M GKKS A SIVY A + + ++ K + F
Sbjct: 1 RRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAF 60
Query: 63 RQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGG 122
AL NV P EV++RRVGG+ Y VP E+ R ALA+RW++ AARKR + +M RL
Sbjct: 61 EVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLAN 120
Query: 123 EIIDAANNRGVAVRKREETHKVAEANRAFS 152
E+ DAA N+G AV+KRE+ H++AEAN+AF+
Sbjct: 121 ELSDAAENKGTAVKKREDVHRMAEANKAFA 150
>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 155
Score = 187 bits (476), Expect = 9e-49
Identities = 72/155 (46%), Positives = 103/155 (66%)
Query: 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
MSRR + DP + + +V +N I+ GKKS+A I+Y A +++K + +P++
Sbjct: 1 MSRRGTVEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAVKKIQQKTETNPLS 60
Query: 61 LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
+ RQA+ VTP V+ RRVGG+ + VP EI S + +ALAIRWL+ AARKR M +L
Sbjct: 61 VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGAARKRPGRNMAFKL 120
Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYR 155
E++DAA G AVRK+EETH++AEANRAF+H+R
Sbjct: 121 SSELVDAAKGSGDAVRKKEETHRMAEANRAFAHFR 155
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus
thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G*
1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G
1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G
2zm6_G 3fic_G* 2vqe_G* ...
Length = 151
Score = 181 bits (462), Expect = 4e-47
Identities = 70/150 (46%), Positives = 107/150 (71%)
Query: 7 AVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQAL 66
A VR++ PD + D +V F+N IM GKK++A I Y A ++++K ++P+ +F+QA+
Sbjct: 2 AEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAV 61
Query: 67 INVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIID 126
NV P+ EVR+RRVGGA Y VP E++ +R Q+LA+RWL+ AA +R E R+ E++D
Sbjct: 62 ENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMD 121
Query: 127 AANNRGVAVRKREETHKVAEANRAFSHYRW 156
AA +G AV+K+E+ ++AEANRA++HYRW
Sbjct: 122 AAEGKGGAVKKKEDVERMAEANRAYAHYRW 151
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn-
helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP:
a.75.1.1
Length = 218
Score = 153 bits (388), Expect = 2e-38
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 28 NAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYSV 87
KK A +V AF ++EK+ K+P+ + A+ N P+ + + GG Y V
Sbjct: 92 EHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHV 151
Query: 88 PGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANN--RGVAVRKREETH 142
+I+ R +A+R + + A R + + + L EII AAN + A K+ E
Sbjct: 152 AVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIE 211
Query: 143 KVAEANR 149
++AE++R
Sbjct: 212 RIAESSR 218
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 204
Score = 131 bits (331), Expect = 7e-32
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 14 PDPKFSDFVVAKFMNAIMYGGKK----SVAVSIVYGAFDLVEKKEKKDPVALFRQALINV 69
K +V + N++M G+ + V IV AF+++ ++P+ + A+IN
Sbjct: 60 RFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINS 119
Query: 70 TPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIID 126
P+ + G +++ R AI L AR+ RN T+ + L E+I+
Sbjct: 120 GPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELIN 179
Query: 127 AANNRG--VAVRKREETHKVAEANR 149
AA A++K++E +VA++NR
Sbjct: 180 AAKGSSNSYAIKKKDELERVAKSNR 204
>2noq_F L10A, 40S ribosomal protein S5; IRES RNA, ribosome, translation,
internal initiation; 7.30A {Saccharomyces cerevisiae}
PDB: 1s1h_G
Length = 150
Score = 126 bits (317), Expect = 2e-30
Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 9/143 (6%)
Query: 16 PKFSDFVVAKFMNAIMY----GGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTP 71
K ++ + N++M GKK AV I+ D++ ++P+ + A+ N P
Sbjct: 8 RKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGP 67
Query: 72 QFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAA 128
+ + GGAA +++ R AI L + AR+ RN T+ + L E+I+AA
Sbjct: 68 REDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAA 127
Query: 129 NNRG--VAVRKREETHKVAEANR 149
A++K++E +VA++NR
Sbjct: 128 KGSSTSYAIKKKDELERVAKSNR 150
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 701
Score = 30.7 bits (69), Expect = 0.15
Identities = 17/142 (11%), Positives = 40/142 (28%), Gaps = 25/142 (17%)
Query: 6 RAVVREVLP---DPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALF 62
+ ++ + + + K + KK+V ++I +++ K L
Sbjct: 392 KELIESCVKNKDLKSPCELAIEKTFS--FGKTKKNVKINIFE------KEEGKN----LL 439
Query: 63 RQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGG 122
+++N E+ G +P S + + + T I +
Sbjct: 440 GPSILN-----EIYVYD--GNVIGIP---ESFDGVKEEFKDFLEKGKSEGVATGIRYIDA 489
Query: 123 EIIDAANNRGVAVRKREETHKV 144
+ A KV
Sbjct: 490 LCFKITSKLEEAFVSNTTEFKV 511
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.6 bits (65), Expect = 0.34
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 32/57 (56%)
Query: 63 RQALINVTPQFEVRTRRVGGAAY---SVPGEITSKRSQALAIRWLIMAARKRNETTM 116
+QAL + ++ Y S P ALAI+ TM
Sbjct: 19 KQALKKLQASLKL---------YADDSAP---------ALAIK-----------ATM 46
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.6 bits (63), Expect = 0.62
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 24/101 (23%)
Query: 77 TRRVGGAAYSVP----GEITSKRSQALAIRW----LIMAARKRN----ETTMID------ 118
T ++G SVP G +T+ R ++++ L M RKR E + D
Sbjct: 1212 TDKIG---RSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENEL 1268
Query: 119 ---RLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
+L E I + + + + E H AE+ + +W
Sbjct: 1269 EALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQW 1309
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 26.4 bits (58), Expect = 3.0
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 5 RRAVVREVLPDPKF-SDF--------VVAKFMNAIMYG-GKKSVAVSIVYGAFDLVEKK- 53
V+ L + F + + + AK + K + A + ++
Sbjct: 80 FDQVLNLCLTE--FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 54 EKKDPVALFRQA 65
+KK ALFR
Sbjct: 138 DKKSNSALFRAV 149
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway,
EPSP synthase, glyphosate, PEP, transferase; HET: GPJ
S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2
PDB: 1rf5_A 1rf4_A*
Length = 427
Score = 26.0 bits (56), Expect = 3.8
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 89 GEITSKRSQALAIRWLIMAARKRNETTMIDRLGGE----IIDAANNRGVAVRKREETHKV 144
G I ++++ R +I + ET + D L GE + + GV + ++ V
Sbjct: 12 GIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITV 71
>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419,
structural genomics, JCSG, PSI, protein structure
initiative; HET: NAD; 1.70A {Thermotoga maritima} SCOP:
c.2.1.3 d.81.1.3 PDB: 3cin_A*
Length = 394
Score = 25.3 bits (55), Expect = 6.8
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 42 IVYGAFDLVEKKEKKD---PVALFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQA 98
+ G++D+ K K V + + ++T E+R G+ ++P E
Sbjct: 59 KIVGSYDVDRAKIGKKLSEVVKQYWNDVDSLTSDPEIRKGVHLGSVRNLPIEAEGLEDSM 118
Query: 99 LAIRWLIMAARKRNET 114
+ ++ E
Sbjct: 119 TLKEAVDTLVKEWTEL 134
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A
{Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A*
2aru_A* 2c7i_A 2ars_A*
Length = 262
Score = 25.1 bits (54), Expect = 6.8
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 75 VRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVA 134
R GGA Y G++ ++ ++ + T+M + ++++ G+
Sbjct: 70 ARRYTGGGAVYHDLGDLNF---------SVVRSSDDMDITSMFRTMNEAVVNSLRILGLD 120
Query: 135 VRKREETHKVAEAN 148
R E N
Sbjct: 121 ARPGELNDVSIPVN 134
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB:
3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Length = 368
Score = 25.2 bits (54), Expect = 7.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 44 YGAFDLVEKKEKKDPVALFRQALIN 68
Y + +L + KKDP+ FR+ L
Sbjct: 281 YRSKELENEWAKKDPLVRFRKFLEA 305
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta
barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A*
2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Length = 445
Score = 25.2 bits (54), Expect = 7.6
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 89 GEITSKRSQALAIRWLIMAARKRNETTMIDRLGGE----IIDAANNRGVAVRKREETHKV 144
G + ++++ R + ET + L GE A G +RK +T +
Sbjct: 15 GTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEGDTWII 74
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.11 PDB: 2bp7_A
Length = 407
Score = 24.7 bits (53), Expect = 8.6
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 48 DLVEKKEKKDPVALFRQALIN 68
D DP+A +Q LI
Sbjct: 324 DDWSHFPLGDPIARLKQHLIK 344
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.134 0.381
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,316,573
Number of extensions: 56164
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 26
Length of query: 156
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 71
Effective length of database: 3,632,490
Effective search space: 257906790
Effective search space used: 257906790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)