RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780265|ref|YP_003064678.1| 30S ribosomal protein S7
[Candidatus Liberibacter asiaticus str. psy62]
(156 letters)
>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus
[TaxId: 274]}
Length = 145
Score = 180 bits (458), Expect = 5e-47
Identities = 67/145 (46%), Positives = 103/145 (71%)
Query: 12 VLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTP 71
+ PD + D +V F+N IM GKK++A I Y A ++++K ++P+ +F+QA+ NV P
Sbjct: 1 LQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKP 60
Query: 72 QFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNR 131
+ EVR+RRVGGA Y VP E++ +R Q+LA+RWL+ AA +R E R+ E++DAA +
Sbjct: 61 RMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGK 120
Query: 132 GVAVRKREETHKVAEANRAFSHYRW 156
G AV+K+E+ ++AEANRA++HYRW
Sbjct: 121 GGAVKKKEDVERMAEANRAYAHYRW 145
>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli
[TaxId: 562]}
Length = 150
Score = 175 bits (446), Expect = 1e-45
Identities = 75/150 (50%), Positives = 103/150 (68%)
Query: 3 RRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALF 62
RRR R++LPDPKF ++AKF+N +M GKKS A SIVY A + + ++ K + F
Sbjct: 1 RRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAF 60
Query: 63 RQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGG 122
AL NV P EV++RRVGG+ Y VP E+ R ALA+RW++ AARKR + +M RL
Sbjct: 61 EVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLAN 120
Query: 123 EIIDAANNRGVAVRKREETHKVAEANRAFS 152
E+ DAA N+G AV+KRE+ H++AEAN+AF+
Sbjct: 121 ELSDAAENKGTAVKKREDVHRMAEANKAFA 150
>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 139
Score = 161 bits (408), Expect = 3e-41
Identities = 77/139 (55%), Positives = 99/139 (71%)
Query: 10 REVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINV 69
R+VLPDP ++ +V + +N IM GKKS A I+Y AFD++ ++ KDP+ +F QAL NV
Sbjct: 1 RDVLPDPIYNSKLVTRLINKIMIDGKKSKAQKILYTAFDIIRERTGKDPMEVFEQALKNV 60
Query: 70 TPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAAN 129
P EVR RRVGGA Y VP E+ R +L +RWL+ AR RNE TM +RL EI+DAAN
Sbjct: 61 MPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKTMEERLANEIMDAAN 120
Query: 130 NRGVAVRKREETHKVAEAN 148
N G AV+KRE+THK+AEAN
Sbjct: 121 NTGAAVKKREDTHKMAEAN 139
>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 201
Score = 131 bits (330), Expect = 4e-32
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 27 MNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYS 86
KK A +V AF ++EK+ K+P+ + A+ N P+ + + GG Y
Sbjct: 74 REHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYH 133
Query: 87 VPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANN--RGVAVRKREET 141
V +I+ R +A+R + + A R + + + L EII AAN + A K+ E
Sbjct: 134 VAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEI 193
Query: 142 HKVAEANR 149
++AE++R
Sbjct: 194 ERIAESSR 201
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
module {Pseudomonas putida [TaxId: 303]}
Length = 407
Score = 26.4 bits (57), Expect = 1.1
Identities = 9/42 (21%), Positives = 12/42 (28%)
Query: 27 MNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALIN 68
G + Y D DP+A +Q LI
Sbjct: 303 WVTYRAGPHSTSDDPSKYRPADDWSHFPLGDPIARLKQHLIK 344
>d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium
tuberculosis, HbN [TaxId: 1773]}
Length = 127
Score = 26.0 bits (57), Expect = 1.4
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 104 LIMAARKRNETTMIDRLGGE 123
L+ RKR ++ D++GG
Sbjct: 2 LLSRLRKREPISIYDKIGGH 21
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 427
Score = 26.0 bits (56), Expect = 1.8
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 89 GEITSKRSQALAIRWLIMAARKRNETTMIDRLGGE----IIDAANNRGVAVRKREETHKV 144
G I ++++ R +I + ET + D L GE + + GV + ++ V
Sbjct: 12 GIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITV 71
>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 243
Score = 25.0 bits (53), Expect = 2.8
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 123 EIIDAANNRGVAVRKREETHKVAE 146
EI G +V E+T ++ E
Sbjct: 216 EIFTDPRTMGYSVTAPEDTRRICE 239
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 365
Score = 24.8 bits (53), Expect = 3.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 44 YGAFDLVEKKEKKDPVALFRQALIN 68
Y + +L + KKDP+ FR+ L
Sbjct: 278 YRSKELENEWAKKDPLVRFRKFLEA 302
>d2zjrs1 b.53.1.1 (S:1-175) Ribosomal protein TL5 (general stress
protein CTC) {Deinococcus radiodurans [TaxId: 1299]}
Length = 175
Score = 24.3 bits (52), Expect = 5.4
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 29 AIMYGGKKSVAVSIVYGAFDLVEKKE 54
A+ Y + +V+ ++ AFD +++
Sbjct: 21 AVAYNKENNVSFALDRKAFDRAFRQQ 46
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Escherichia coli [TaxId: 562]}
Length = 427
Score = 24.2 bits (51), Expect = 5.5
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 89 GEITSKRSQALAIRWLIMAARKRNETTMIDRLGGE----IIDAANNRGVAVRKREETHKV 144
G I S++++ R L++AA +T + + L + +++A GV+ + +
Sbjct: 14 GTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRC 73
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 24.0 bits (51), Expect = 6.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 92 TSKRSQALAIRWLIMAA 108
+S++ A AIR L M A
Sbjct: 1 SSRKELANAIRALSMDA 17
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma
acidophilum [TaxId: 2303]}
Length = 256
Score = 23.5 bits (50), Expect = 8.2
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 75 VRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVA 134
R GGA Y G++ ++ ++ + T+M + ++++ G+
Sbjct: 70 ARRYTGGGAVYHDLGDLNF---------SVVRSSDDMDITSMFRTMNEAVVNSLRILGLD 120
Query: 135 VRKREET 141
R E
Sbjct: 121 ARPGELN 127
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.381
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 563,632
Number of extensions: 24225
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 17
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.1 bits)