HHsearch alignment for GI: 254780266 and conserved domain: COG0048

>COG0048 RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=371.81  Aligned_cols=123  Identities=67%  Similarity=1.089  Sum_probs=119.1

Q ss_pred             CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCE
Q ss_conf             95502354268737864666677000686212478756751845674424328899966996999980788875464678
Q gi|254780266|r    1 MPTVNQLIRKPRKGSFRACAKVTALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLTSGVEVIAYVPGEGHNLQEHSV   80 (124)
Q Consensus         1 MpTinQlir~~Rkk~~~~~~K~~~L~~~PqkkGVclkv~~~~PKKPNSA~RKvarV~Lsng~~v~ayIPGeGhnlqehs~   80 (124)
T Consensus         7 m~t~~q~~R~~rr~~-~~k~Ks~~L~g~Pq~RGV~~~v~~~~pKkPNSAlRK~~RVrL~NG~~VtAyiPg~Gh~lqEH~~   85 (129)
T COG0048           7 MPTINQLVRKKRRSL-GLKSKSPALEGAPQARGVCTRVYTVTPKKPNSALRKVARVRLINGKEVTAYIPGEGHNLQEHSE   85 (129)
T ss_pred             HHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHEEEEEEEECCCEEEEECCCCCCCCCCCCE
T ss_conf             257777764144312-4224477334797405578998752548977655206899952696999975789854353578


Q ss_pred             EEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99953783888875478980400144334200121125610789
Q gi|254780266|r   81 VMLCGGRVKDLPGVKYRVIRGVLDAQGVKNRKQARSRYGAERPK  124 (124)
Q Consensus        81 VLvrGGrv~DlPGVry~ivRG~~D~~gv~~Rk~~RSkYG~kkpk  124 (124)
T Consensus        86 Vli~G~~v~DlPGVRy~vvrg~~ds~gv~~r~~~rs~yg~k~~k  129 (129)
T COG0048          86 VLIRGGRVKDLPGVRYKVVRGALDSLGVLDRGQKRSKYGAKRPK  129 (129)
T ss_pred             EEEECCCCCCCCCCEEEEEEECCHHHHHHHHCCCCCCCCCCCCC
T ss_conf             99966765888971589998723012323313233645566899