HHsearch alignment for GI: 254780266 and conserved domain: COG0048
>COG0048 RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=371.81 Aligned_cols=123 Identities=67% Similarity=1.089 Sum_probs=119.1
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCE
Q ss_conf 95502354268737864666677000686212478756751845674424328899966996999980788875464678
Q gi|254780266|r 1 MPTVNQLIRKPRKGSFRACAKVTALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLTSGVEVIAYVPGEGHNLQEHSV 80 (124)
Q Consensus 1 MpTinQlir~~Rkk~~~~~~K~~~L~~~PqkkGVclkv~~~~PKKPNSA~RKvarV~Lsng~~v~ayIPGeGhnlqehs~ 80 (124)
T Consensus 7 m~t~~q~~R~~rr~~-~~k~Ks~~L~g~Pq~RGV~~~v~~~~pKkPNSAlRK~~RVrL~NG~~VtAyiPg~Gh~lqEH~~ 85 (129)
T COG0048 7 MPTINQLVRKKRRSL-GLKSKSPALEGAPQARGVCTRVYTVTPKKPNSALRKVARVRLINGKEVTAYIPGEGHNLQEHSE 85 (129)
T ss_pred HHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHEEEEEEEECCCEEEEECCCCCCCCCCCCE
T ss_conf 257777764144312-4224477334797405578998752548977655206899952696999975789854353578
Q ss_pred EEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99953783888875478980400144334200121125610789
Q gi|254780266|r 81 VMLCGGRVKDLPGVKYRVIRGVLDAQGVKNRKQARSRYGAERPK 124 (124)
Q Consensus 81 VLvrGGrv~DlPGVry~ivRG~~D~~gv~~Rk~~RSkYG~kkpk 124 (124)
T Consensus 86 Vli~G~~v~DlPGVRy~vvrg~~ds~gv~~r~~~rs~yg~k~~k 129 (129)
T COG0048 86 VLIRGGRVKDLPGVRYKVVRGALDSLGVLDRGQKRSKYGAKRPK 129 (129)
T ss_pred EEEECCCCCCCCCCEEEEEEECCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99966765888971589998723012323313233645566899