HHsearch alignment for GI: 254780266 and conserved domain: PTZ00067
>PTZ00067 40S ribosomal S23; Provisional.
Probab=100.00 E-value=9.7e-38 Score=241.92 Aligned_cols=101 Identities=31% Similarity=0.633 Sum_probs=92.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEE-CCCCEEEEEECCCC--CCCCCCCEEEEEC-CC-
Q ss_conf 3786466667700068621247875675184567442432889996-69969999807888--7546467899953-78-
Q gi|254780266|r 13 KGSFRACAKVTALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARL-TSGVEVIAYVPGEG--HNLQEHSVVMLCG-GR- 87 (124)
Q Consensus 13 kk~~~~~~K~~~L~~~PqkkGVclkv~~~~PKKPNSA~RKvarV~L-sng~~v~ayIPGeG--hnlqehs~VLvrG-Gr- 87 (124)
T Consensus 29 k~~lg~~~K~~Pl~Gap~akGIvlekv~veaKqPNSAiRKcvrVqLikNgk~vtAfvPgdG~l~~i~EhdeVlv~g~Gr~ 108 (143)
T PTZ00067 29 KAHTGTRYKANPFGGSSHAKGIVVEKIGVEAKQPNSAVRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRS 108 (143)
T ss_pred HHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCC
T ss_conf 87616520038768985405278999885025886012158999991499199999169963112566888999833757
Q ss_pred ---CCCCCCCEEEEEE--CCCCCCCCCCCCC
Q ss_conf ---3888875478980--4001443342001
Q gi|254780266|r 88 ---VKDLPGVKYRVIR--GVLDAQGVKNRKQ 113 (124)
Q Consensus 88 ---v~DlPGVry~ivR--G~~D~~gv~~Rk~ 113 (124)
T Consensus 109 G~s~gDiPGVr~kvvkV~~vSL~aL~kgkkE 139 (143)
T PTZ00067 109 GHAVGDIPGVRFKIVKVSGVSLLALYRQKKE 139 (143)
T ss_pred CCCCCCCCCEEEEEEEECCEEHHHHHHCCCC
T ss_conf 7756889960799999998879999704132