Query gi|254780266|ref|YP_003064679.1| 30S ribosomal protein S12 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 124 No_of_seqs 127 out of 756 Neff 3.8 Searched_HMMs 33803 Date Tue May 24 09:06:30 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780266.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2vqe_L 30S ribosomal protein 100.0 0 0 356.9 9.3 104 21-124 1-104 (113) 2 >2zkq_l 40S ribosomal protein 100.0 0 0 321.4 9.6 115 1-117 19-142 (143) 3 >1ah9_A IF1, initiation factor 86.3 0.77 2.3E-05 25.7 3.5 32 53-84 20-55 (71) 4 >3i4o_A Translation initiation 80.6 1.3 3.8E-05 24.4 2.7 45 30-84 15-63 (79) 5 >1d7q_A Translation initiation 74.7 6.9 0.0002 20.1 7.0 33 53-85 45-80 (143) 6 >2oqk_A Putative translation i 74.0 3.1 9.1E-05 22.2 3.1 51 24-84 27-80 (117) 7 >1jt8_A EIF-1A, probable trans 63.2 3.7 0.00011 21.7 1.7 51 24-84 15-68 (102) 8 >3fim_B ARYL-alcohol oxidase; 55.6 4.1 0.00012 21.4 0.8 24 60-83 119-142 (331) 9 >1hr0_W Translation initiation 54.2 2.6 7.7E-05 22.6 -0.4 47 45-106 17-63 (71) 10 >1ju2_A HydroxynitrIle lyase; 41.7 8 0.00024 19.7 0.5 40 60-99 23-66 (148) 11 >1so7_A Sialidase 2; neuramini 41.2 28 0.00084 16.5 3.4 34 50-83 22-55 (191) 12 >1b6g_A Haloalkane dehalogenas 34.4 15 0.00045 18.1 1.0 16 59-74 44-59 (240) 13 >1rc6_A Hypothetical protein Y 29.1 45 0.0013 15.4 3.3 49 61-109 58-111 (139) 14 >2jbv_A Choline oxidase; alcoh 27.2 15 0.00045 18.1 -0.0 49 59-107 179-249 (370) 15 >1cf3_A Protein (glucose oxida 27.1 19 0.00055 17.6 0.5 37 47-83 76-112 (309) 16 >1m5q_A SMAP3, small nuclear r 26.3 50 0.0015 15.1 3.3 42 47-88 6-59 (67) 17 >1sef_A Conserved hypothetical 24.7 54 0.0016 14.9 2.7 47 61-107 62-113 (153) 18 >1vyd_A Cytochrome C2; electro 23.2 46 0.0014 15.3 1.8 22 73-94 4-27 (33) No 1 >>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (L:23-135) Probab=100.00 E-value=0 Score=356.93 Aligned_cols=104 Identities=72% Similarity=1.174 Sum_probs=102.6 Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEE Q ss_conf 67700068621247875675184567442432889996699699998078887546467899953783888875478980 Q gi|254780266|r 21 KVTALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLTSGVEVIAYVPGEGHNLQEHSVVMLCGGRVKDLPGVKYRVIR 100 (124) Q Consensus 21 K~~~L~~~PqkkGVclkv~~~~PKKPNSA~RKvarV~Lsng~~v~ayIPGeGhnlqehs~VLvrGGrv~DlPGVry~ivR 100 (124) |+++|++|||++|||+++++++|||||||+||||+|+|+||++||||||||||||||||+|||||||++|||||+||+|| T Consensus 1 K~~~L~g~Pq~kGi~l~v~~~~pKKPNSA~RKvarVrL~ngk~v~AyIPG~ghnlqehs~VLVrGgrv~DlPGVrykiVr 80 (113) T 2vqe_L 1 KVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVR 80 (113) T ss_dssp SCCCSSSCSEEEEEESCCCEECCCTTCCCCEECCEEEETTSCEEEEECCSSCCCCCTTCEEEEEECCCTTSTTCCEEECT T ss_pred CCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEE T ss_conf 88534799751079988878336776501312789996699599999578886555378899958756778875789984 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 400144334200121125610789 Q gi|254780266|r 101 GVLDAQGVKNRKQARSRYGAERPK 124 (124) Q Consensus 101 G~~D~~gv~~Rk~~RSkYG~kkpk 124 (124) |+|||++|.+|+++||+||+|+|| T Consensus 81 G~~d~~~v~~Rk~~rSkyG~k~~k 104 (113) T 2vqe_L 81 GVYDAAGVKDRKKSRSKYGTKKPK 104 (113) T ss_dssp TSTTSCCCTTCCSSGGGGTCCCCC T ss_pred EECCCCCCCCCCCCCCCCCCCCCH T ss_conf 501364446653245546645730 No 2 >>2zkq_l 40S ribosomal protein S23E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_L (l:) Probab=100.00 E-value=0 Score=321.39 Aligned_cols=115 Identities=27% Similarity=0.503 Sum_probs=103.2 Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEC-CCCEEEEEECCCC--CCCCC Q ss_conf 95502354268737864666677000686212478756751845674424328899966-9969999807888--75464 Q gi|254780266|r 1 MPTVNQLIRKPRKGSFRACAKVTALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLT-SGVEVIAYVPGEG--HNLQE 77 (124) Q Consensus 1 MpTinQlir~~Rkk~~~~~~K~~~L~~~PqkkGVclkv~~~~PKKPNSA~RKvarV~Ls-ng~~v~ayIPGeG--hnlqe 77 (124) |.|++|.....+ ....+.++++|++|||++|||++++++||||||||+||||+|+|+ ||++||||||||| ||||| T Consensus 19 ~~~~~~~~~~r~--~~~~k~k~~~l~g~Pq~kGivl~~~~~~pKKPNSA~RK~arV~L~~Ngk~vtAyIPGeG~~hnlqE 96 (143) T 2zkq_l 19 DQKWHDKQYKKA--HLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 96 (143) T ss_dssp -------CCCSC--CCCCCCCCCCSTTCSCEEEEEEEEEEEECCTTCCCEEEEEEEEESGGGCEEEEECCSSCSSCCCCT T ss_pred HHCCCCCHHHHH--HCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHEEEEEEEECCCEEEEEECCCCCCCCCCCC T ss_conf 630012046665--404430258344894042478999984257887002226899990599799999179853033453 Q ss_pred CCEEEEEC-----CCCCCCCCCEEEEEECCCCC-CCCCCCCCCCCC Q ss_conf 67899953-----78388887547898040014-433420012112 Q gi|254780266|r 78 HSVVMLCG-----GRVKDLPGVKYRVIRGVLDA-QGVKNRKQARSR 117 (124) Q Consensus 78 hs~VLvrG-----Grv~DlPGVry~ivRG~~D~-~gv~~Rk~~RSk 117 (124) ||+||||| ||++|||||+||||||+||+ .++.+|+++||| T Consensus 97 hs~VlVrG~G~~gGrv~DLPGVrykvIrg~~d~l~~v~~rk~~rsk 142 (143) T 2zkq_l 97 NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 142 (143) T ss_dssp TCCEEECSSSSSSCCBTTBTTCCEECCTTSTTSCSTTTTCCCCC-- T ss_pred CCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCHHHHHCCCCCCCC T ss_conf 6489998467467766889972799999758119998603130589 No 3 >>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} (A:) Probab=86.34 E-value=0.77 Score=25.67 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=27.2 Q ss_pred EEEEEECCCCEEEEEECCCC--C--CCCCCCEEEEE Q ss_conf 88999669969999807888--7--54646789995 Q gi|254780266|r 53 VIKARLTSGVEVIAYVPGEG--H--NLQEHSVVMLC 84 (124) Q Consensus 53 varV~Lsng~~v~ayIPGeG--h--nlqehs~VLvr 84 (124) --+|+|.||.+++|||||-= + .+.+.|.|+|. T Consensus 20 ~f~V~l~dg~~~~a~i~GKmRk~ri~I~~GD~V~Ve 55 (71) T 1ah9_A 20 MFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVE 55 (71) T ss_dssp EEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCE T ss_pred EEEEEECCCCEEEEECCCHHHEEEEEECCCCEEEEE T ss_conf 899995799799998464233027996499999999 No 4 >>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} (A:) Probab=80.58 E-value=1.3 Score=24.37 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=34.3 Q ss_pred CCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCC--C--CCCCCCEEEEE Q ss_conf 2124787567518456744243288999669969999807888--7--54646789995 Q gi|254780266|r 30 QKRGVCLRVYTVTPKKPNSALRKVIKARLTSGVEVIAYVPGEG--H--NLQEHSVVMLC 84 (124) Q Consensus 30 qkkGVclkv~~~~PKKPNSA~RKvarV~Lsng~~v~ayIPGeG--h--nlqehs~VLvr 84 (124) +.-|++++... |. --+|+|.||.+++|||+|-= + .+.+.|.|+|. T Consensus 15 e~~G~V~~~L~------~~----~f~V~l~dg~~~~~~i~GKmrk~rI~I~~GD~V~Ve 63 (79) T 3i4o_A 15 EVEGRVVEPLP------NA----MFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVE 63 (79) T ss_dssp EEEEEEEEEET------TT----EEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEE T ss_pred EEEEEEEEECC------CC----EEEEEECCCCEEEEECCCCEEEEEEEECCCCEEEEE T ss_conf 99999999889------98----899997899999997145035757994499999999 No 5 >>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein; NMR {Homo sapiens} (A:) Probab=74.70 E-value=6.9 Score=20.11 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=28.5 Q ss_pred EEEEEECCCCEEEEEECCCC---CCCCCCCEEEEEC Q ss_conf 88999669969999807888---7546467899953 Q gi|254780266|r 53 VIKARLTSGVEVIAYVPGEG---HNLQEHSVVMLCG 85 (124) Q Consensus 53 varV~Lsng~~v~ayIPGeG---hnlqehs~VLvrG 85 (124) ..+|.|.||.++.|+|||-= .-+.+.+.|||.= T Consensus 45 ~~~V~~~dg~~~l~~ipgK~Rk~iwI~~GD~VlVe~ 80 (143) T 1d7q_A 45 RLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL 80 (143) T ss_dssp EEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEEC T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCEEEEEC T ss_conf 899997899899999626640257980799999941 No 6 >>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation factor (EIF), SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II} (A:) Probab=73.97 E-value=3.1 Score=22.16 Aligned_cols=51 Identities=16% Similarity=0.237 Sum_probs=37.2 Q ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCC---CCCCCCCEEEEE Q ss_conf 0006862124787567518456744243288999669969999807888---754646789995 Q gi|254780266|r 24 ALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLTSGVEVIAYVPGEG---HNLQEHSVVMLC 84 (124) Q Consensus 24 ~L~~~PqkkGVclkv~~~~PKKPNSA~RKvarV~Lsng~~v~ayIPGeG---hnlqehs~VLvr 84 (124) +....-|.-|.+++... | -.-.|.|.||.++.|+|||-= .-+.+.+.|||. T Consensus 27 ~~~~~~e~~g~V~~~~G------~----~~~~V~~~dg~~~l~~ipgK~Rk~iwI~~GD~VlVe 80 (117) T 2oqk_A 27 VFKEEGQEYGQVQRXLG------N----GRLDAYCFDGQKRLCHIRGKXRKKVWVNPGDIVLVS 80 (117) T ss_dssp CCCCTTEEEEEEEEEEE------T----TEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEE T ss_pred CCCCCCEEEEEEEEECC------C----CEEEEEECCCCEEEEEECCCCCCEEEEECCCEEEEE T ss_conf 16999828999999739------9----789999889999999974212011798089999994 No 7 >>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} (A:) Probab=63.21 E-value=3.7 Score=21.67 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=35.0 Q ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCC---CCCCCCCEEEEE Q ss_conf 0006862124787567518456744243288999669969999807888---754646789995 Q gi|254780266|r 24 ALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLTSGVEVIAYVPGEG---HNLQEHSVVMLC 84 (124) Q Consensus 24 ~L~~~PqkkGVclkv~~~~PKKPNSA~RKvarV~Lsng~~v~ayIPGeG---hnlqehs~VLvr 84 (124) +....-|--|.+++.. +| -..+|.|.||.+++|+|||-= .-+.+-|.|||. T Consensus 15 ~~~~~~e~~~~V~~~l------G~----~~~~V~~~~G~~~la~i~gK~rk~iwI~~GD~VlV~ 68 (102) T 1jt8_A 15 PRKEENEILGIIEQML------GA----SRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVK 68 (102) T ss_dssp SCCSSCCEEEEEECSS------CS----SEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEEC T ss_pred CCCCCCEEEEEEEEEC------CC----CEEEEEECCCCEEEEEECCCEEEEEEECCCCEEEEE T ss_conf 9998898999999982------99----889999799999999984760201585599999999 No 8 >>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} (B:119-214,B:273-507) Probab=55.57 E-value=4.1 Score=21.44 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=18.7 Q ss_pred CCCEEEEEECCCCCCCCCCCEEEE Q ss_conf 996999980788875464678999 Q gi|254780266|r 60 SGVEVIAYVPGEGHNLQEHSVVML 83 (124) Q Consensus 60 ng~~v~ayIPGeGhnlqehs~VLv 83 (124) -|-.+.+-.||.|.|||+|-.+-+ T Consensus 119 ~gI~vv~dlPgVG~NLqDH~~~~~ 142 (331) T 3fim_B 119 VGIDTIVNNPSVGRNLSDHLLLPA 142 (331) T ss_dssp TTCCCSEECTTTTCSBBCCEEECC T ss_pred CCCCEEECCCCCCCCCEECCCCCC T ss_conf 775146336654433110122441 No 9 >>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} (W:) Probab=54.22 E-value=2.6 Score=22.60 Aligned_cols=47 Identities=30% Similarity=0.502 Sum_probs=34.3 Q ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCC Q ss_conf 67442432889996699699998078887546467899953783888875478980400144 Q gi|254780266|r 45 KPNSALRKVIKARLTSGVEVIAYVPGEGHNLQEHSVVMLCGGRVKDLPGVKYRVIRGVLDAQ 106 (124) Q Consensus 45 KPNSA~RKvarV~Lsng~~v~ayIPGeGhnlqehs~VLvrGGrv~DlPGVry~ivRG~~D~~ 106 (124) -||.- -+|+|.||.+|+|||-|- +|-.+.+=|||=+-++----||+. T Consensus 17 lpn~~----F~V~Leng~~vla~isGK-----------mR~~~IrIl~GDrV~VE~spYDlt 63 (71) T 1hr0_W 17 LPNAT----FRVKLDSGPEILAYISGK-----------MRMHYIRILPGDRVVVEITPYDPT 63 (71) T ss_dssp CTTTB----CCCEESSSCBCCCEECHH-----------HHHTCCCCCTTCEEEEECCTTCTT T ss_pred CCCCE----EEEEECCCCEEEEEECCH-----------HHHEEEEECCCCEEEEEECCCCCC T ss_conf 59979----999989999999995775-----------530159875999999997745699 No 10 >>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} (A:258-298,A:366-472) Probab=41.66 E-value=8 Score=19.74 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=27.4 Q ss_pred CCCEEEEEECCCCCCCCCC-C--EEEEECC-CCCCCCCCEEEEE Q ss_conf 9969999807888754646-7--8999537-8388887547898 Q gi|254780266|r 60 SGVEVIAYVPGEGHNLQEH-S--VVMLCGG-RVKDLPGVKYRVI 99 (124) Q Consensus 60 ng~~v~ayIPGeGhnlqeh-s--~VLvrGG-rv~DlPGVry~iv 99 (124) .|-.+..-.||.|+|||+| | .|-++-. -.-|-|=|.+... T Consensus 23 ~gI~~~~~lp~VG~nl~dh~SRG~V~L~S~~dP~~~P~Id~nyl 66 (148) T 1ju2_A 23 LNIPVVLSHPYVGQFLHDNLSYGSLTLKSSSNVRVSPNVKFNYY 66 (148) T ss_dssp TTCCCSEECTTTTEEEECCSCCEEEECSCSSCTTSCCEECCCTT T ss_pred CCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC T ss_conf 49964843777466532376567401025643234755565644 No 11 >>1so7_A Sialidase 2; neuraminidase, ganglioside, sugar-induced form, hydrolase; 1.49A {Homo sapiens} (A:1-79,A:271-382) Probab=41.18 E-value=28 Score=16.53 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=29.4 Q ss_pred CCEEEEEEECCCCEEEEEECCCCCCCCCCCEEEE Q ss_conf 4328899966996999980788875464678999 Q gi|254780266|r 50 LRKVIKARLTSGVEVIAYVPGEGHNLQEHSVVML 83 (124) Q Consensus 50 ~RKvarV~Lsng~~v~ayIPGeGhnlqehs~VLv 83 (124) -|==|-+.+++...+.||.-+-.|+-+||..+|| T Consensus 22 yRiPal~~~~~~~t~LAfae~R~~~~D~~a~~lv 55 (191) T 1so7_A 22 YRIPALLYLPGQQSLLAFAEQRASKKDEHAELIV 55 (191) T ss_dssp EEEEEEEEETTTTEEEEEEEECC-------CEEE T ss_pred EEECEEEEECCCCEEEEEEEECCCCCCCCCCEEE T ss_conf 8637699977999999999551688778876489 No 12 >>1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} (A:1-160,A:231-310) Probab=34.39 E-value=15 Score=18.08 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=10.2 Q ss_pred CCCCEEEEEECCCCCC Q ss_conf 6996999980788875 Q gi|254780266|r 59 TSGVEVIAYVPGEGHN 74 (124) Q Consensus 59 sng~~v~ayIPGeGhn 74 (124) .+.+-+.-+++|.+.+ T Consensus 44 ~~~~p~VVliHG~~~s 59 (240) T 1b6g_A 44 SDAEDVFLCLHGEPTW 59 (240) T ss_dssp TTCSCEEEECCCTTCC T ss_pred CCCCCEEEEECCCCCC T ss_conf 8999889998999876 No 13 >>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, target T1521, PSI, protein structure initiative; 2.60A {Escherichia coli} (A:1-37,A:160-261) Probab=29.07 E-value=45 Score=15.36 Aligned_cols=49 Identities=27% Similarity=0.446 Sum_probs=33.3 Q ss_pred CCEEEEEECCCCCC-----CCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCC Q ss_conf 96999980788875-----46467899953783888875478980400144334 Q gi|254780266|r 61 GVEVIAYVPGEGHN-----LQEHSVVMLCGGRVKDLPGVKYRVIRGVLDAQGVK 109 (124) Q Consensus 61 g~~v~ayIPGeGhn-----lqehs~VLvrGGrv~DlPGVry~ivRG~~D~~gv~ 109 (124) ..-|..|-|||-|+ .|||...|..|-.+-.|----.-+-.|-|-|.|.. T Consensus 58 n~hi~~f~pg~~~~~~e~h~~~hg~~~l~gqgiy~l~~~w~~~~~~~~~~~~~~ 111 (139) T 1rc6_A 58 NMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAY 111 (139) T ss_dssp EEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSCEEEEETTCEEEECSS T ss_pred EEEEEEECCCCEEEEEEECCCEEEEEEECCEEEEEECCEEEEECCCCEEEECCC T ss_conf 999999889924410260252079999687899998999999579989998999 No 14 >>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} (A:59-215,A:270-482) Probab=27.24 E-value=15 Score=18.13 Aligned_cols=49 Identities=24% Similarity=0.285 Sum_probs=32.6 Q ss_pred CCCCEEEEEECCCCCCCCCCCEEEEEC----------------------CCCCCCCCCEEEEEECCCCCCC Q ss_conf 699699998078887546467899953----------------------7838888754789804001443 Q gi|254780266|r 59 TSGVEVIAYVPGEGHNLQEHSVVMLCG----------------------GRVKDLPGVKYRVIRGVLDAQG 107 (124) Q Consensus 59 sng~~v~ayIPGeGhnlqehs~VLvrG----------------------Grv~DlPGVry~ivRG~~D~~g 107 (124) +.|-.+....|+.|.|||+|-.+.+-. +.-...+++.+....+..+..+ T Consensus 179 ~~GI~vv~d~p~VG~nL~DHp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (370) T 2jbv_A 179 EHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPMVAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNT 249 (370) T ss_dssp HTTCCCSEECTTTTCSBBCCEECCEEEEESSCCCSCCSSSCCEEEEECSSTTCSSCSEEEEEESSCCCTTT T ss_pred CCCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCCCCCCC T ss_conf 27970685376654444447420245540266301011144416523265334575520033222233223 No 15 >>1cf3_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.90A {Aspergillus niger} (A:64-115,A:180-227,A:323-531) Probab=27.12 E-value=19 Score=17.58 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=25.5 Q ss_pred CCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEEEE Q ss_conf 4424328899966996999980788875464678999 Q gi|254780266|r 47 NSALRKVIKARLTSGVEVIAYVPGEGHNLQEHSVVML 83 (124) Q Consensus 47 NSA~RKvarV~Lsng~~v~ayIPGeGhnlqehs~VLv 83 (124) +|++.--..+--+.|-.++.-.||.|.|||+|-.+-+ T Consensus 76 ~~g~g~~~~~l~~~g~~~i~~~~gVG~NLqDH~~~~v 112 (309) T 1cf3_A 76 DFGCGDPHGVSMFPNTLHEDQVRSDGLNLQDQTTATV 112 (309) T ss_dssp CTTSSCCCEEECCCBSBCTTCBBCCTCCBBCCEEEEE T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE T ss_conf 6556666532112332212222332676357665268 No 16 >>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} (A:1-67) Probab=26.30 E-value=50 Score=15.06 Aligned_cols=42 Identities=14% Similarity=0.227 Sum_probs=28.4 Q ss_pred CCCCCEEEEEEECCCCEEEEEECCCCC--CC----------CCCCEEEEECCCC Q ss_conf 442432889996699699998078887--54----------6467899953783 Q gi|254780266|r 47 NSALRKVIKARLTSGVEVIAYVPGEGH--NL----------QEHSVVMLCGGRV 88 (124) Q Consensus 47 NSA~RKvarV~Lsng~~v~ayIPGeGh--nl----------qehs~VLvrGGrv 88 (124) +|.+-|-.+|+|++|+++....-|.-+ || .....|+|||..+ T Consensus 6 ~~~l~k~V~V~l~dgr~~~G~L~~~D~~~NlvL~da~E~~~~~~G~v~irG~~I 59 (67) T 1m5q_A 6 NNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKAGEKFNRVFIXYRYI 59 (67) T ss_dssp HHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTTCCEEEEEEECGGGE T ss_pred HHHCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCEEEEECCCE T ss_conf 762798699999999899999999879965699157987898456699937938 No 17 >>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein structure initiative; 2.05A {Enterococcus faecalis V583} (A:1-39,A:161-274) Probab=24.65 E-value=54 Score=14.88 Aligned_cols=47 Identities=23% Similarity=0.455 Sum_probs=39.0 Q ss_pred CCEEEEEECCCCCC-----CCCCCEEEEECCCCCCCCCCEEEEEECCCCCCC Q ss_conf 96999980788875-----464678999537838888754789804001443 Q gi|254780266|r 61 GVEVIAYVPGEGHN-----LQEHSVVMLCGGRVKDLPGVKYRVIRGVLDAQG 107 (124) Q Consensus 61 g~~v~ayIPGeGhn-----lqehs~VLvrGGrv~DlPGVry~ivRG~~D~~g 107 (124) ...|..|-||..|. +|||..-||.|-.+-.|-.--|-+-.|-|-|-. T Consensus 62 nmhilsfepgashayiethvqehgaylisgqgmynldnewypvekgdyifms 113 (153) T 1sef_A 62 NMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMS 113 (153) T ss_dssp EEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTEEEEEETTCEEEEC T ss_pred EEEEEEECCCEECCCCCCCCCCEEEEEECCEEEEEECCEEEEECCCCEEEEC T ss_conf 8999999998066653179865699998578999999999996699899989 No 18 >>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} (A:14-46) Probab=23.17 E-value=46 Score=15.30 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=14.6 Q ss_pred CCCCC-CCEEEEECCCCC-CCCCC Q ss_conf 75464-678999537838-88875 Q gi|254780266|r 73 HNLQE-HSVVMLCGGRVK-DLPGV 94 (124) Q Consensus 73 hnlqe-hs~VLvrGGrv~-DlPGV 94 (124) |.+.. -.+||+|||++. .|=|| T Consensus 4 H~iv~~dG~~i~kggktGPNLyGv 27 (33) T 1vyd_A 4 HSIIAPDGTEIVKGAKTGPNLYGV 27 (33) T ss_dssp CCEECTTSCEEECCCSSSCCCTTC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 634677653345666668533673 Done!