Query         gi|254780266|ref|YP_003064679.1| 30S ribosomal protein S12 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 124
No_of_seqs    127 out of 756
Neff          3.8 
Searched_HMMs 33803
Date          Tue May 24 09:06:30 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780266.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2vqe_L 30S ribosomal protein  100.0       0       0  356.9   9.3  104   21-124     1-104 (113)
  2 >2zkq_l 40S ribosomal protein  100.0       0       0  321.4   9.6  115    1-117    19-142 (143)
  3 >1ah9_A IF1, initiation factor  86.3    0.77 2.3E-05   25.7   3.5   32   53-84     20-55  (71)
  4 >3i4o_A Translation initiation  80.6     1.3 3.8E-05   24.4   2.7   45   30-84     15-63  (79)
  5 >1d7q_A Translation initiation  74.7     6.9  0.0002   20.1   7.0   33   53-85     45-80  (143)
  6 >2oqk_A Putative translation i  74.0     3.1 9.1E-05   22.2   3.1   51   24-84     27-80  (117)
  7 >1jt8_A EIF-1A, probable trans  63.2     3.7 0.00011   21.7   1.7   51   24-84     15-68  (102)
  8 >3fim_B ARYL-alcohol oxidase;   55.6     4.1 0.00012   21.4   0.8   24   60-83    119-142 (331)
  9 >1hr0_W Translation initiation  54.2     2.6 7.7E-05   22.6  -0.4   47   45-106    17-63  (71)
 10 >1ju2_A HydroxynitrIle lyase;   41.7       8 0.00024   19.7   0.5   40   60-99     23-66  (148)
 11 >1so7_A Sialidase 2; neuramini  41.2      28 0.00084   16.5   3.4   34   50-83     22-55  (191)
 12 >1b6g_A Haloalkane dehalogenas  34.4      15 0.00045   18.1   1.0   16   59-74     44-59  (240)
 13 >1rc6_A Hypothetical protein Y  29.1      45  0.0013   15.4   3.3   49   61-109    58-111 (139)
 14 >2jbv_A Choline oxidase; alcoh  27.2      15 0.00045   18.1  -0.0   49   59-107   179-249 (370)
 15 >1cf3_A Protein (glucose oxida  27.1      19 0.00055   17.6   0.5   37   47-83     76-112 (309)
 16 >1m5q_A SMAP3, small nuclear r  26.3      50  0.0015   15.1   3.3   42   47-88      6-59  (67)
 17 >1sef_A Conserved hypothetical  24.7      54  0.0016   14.9   2.7   47   61-107    62-113 (153)
 18 >1vyd_A Cytochrome C2; electro  23.2      46  0.0014   15.3   1.8   22   73-94      4-27  (33)

No 1  
>>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (L:23-135)
Probab=100.00  E-value=0  Score=356.93  Aligned_cols=104  Identities=72%  Similarity=1.174  Sum_probs=102.6

Q ss_pred             CCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEE
Q ss_conf             67700068621247875675184567442432889996699699998078887546467899953783888875478980
Q gi|254780266|r   21 KVTALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLTSGVEVIAYVPGEGHNLQEHSVVMLCGGRVKDLPGVKYRVIR  100 (124)
Q Consensus        21 K~~~L~~~PqkkGVclkv~~~~PKKPNSA~RKvarV~Lsng~~v~ayIPGeGhnlqehs~VLvrGGrv~DlPGVry~ivR  100 (124)
                      |+++|++|||++|||+++++++|||||||+||||+|+|+||++||||||||||||||||+|||||||++|||||+||+||
T Consensus         1 K~~~L~g~Pq~kGi~l~v~~~~pKKPNSA~RKvarVrL~ngk~v~AyIPG~ghnlqehs~VLVrGgrv~DlPGVrykiVr   80 (113)
T 2vqe_L            1 KVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVR   80 (113)
T ss_dssp             SCCCSSSCSEEEEEESCCCEECCCTTCCCCEECCEEEETTSCEEEEECCSSCCCCCTTCEEEEEECCCTTSTTCCEEECT
T ss_pred             CCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEE
T ss_conf             88534799751079988878336776501312789996699599999578886555378899958756778875789984


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             400144334200121125610789
Q gi|254780266|r  101 GVLDAQGVKNRKQARSRYGAERPK  124 (124)
Q Consensus       101 G~~D~~gv~~Rk~~RSkYG~kkpk  124 (124)
                      |+|||++|.+|+++||+||+|+||
T Consensus        81 G~~d~~~v~~Rk~~rSkyG~k~~k  104 (113)
T 2vqe_L           81 GVYDAAGVKDRKKSRSKYGTKKPK  104 (113)
T ss_dssp             TSTTSCCCTTCCSSGGGGTCCCCC
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCH
T ss_conf             501364446653245546645730


No 2  
>>2zkq_l 40S ribosomal protein S23E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_L (l:)
Probab=100.00  E-value=0  Score=321.39  Aligned_cols=115  Identities=27%  Similarity=0.503  Sum_probs=103.2

Q ss_pred             CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEC-CCCEEEEEECCCC--CCCCC
Q ss_conf             95502354268737864666677000686212478756751845674424328899966-9969999807888--75464
Q gi|254780266|r    1 MPTVNQLIRKPRKGSFRACAKVTALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLT-SGVEVIAYVPGEG--HNLQE   77 (124)
Q Consensus         1 MpTinQlir~~Rkk~~~~~~K~~~L~~~PqkkGVclkv~~~~PKKPNSA~RKvarV~Ls-ng~~v~ayIPGeG--hnlqe   77 (124)
                      |.|++|.....+  ....+.++++|++|||++|||++++++||||||||+||||+|+|+ ||++|||||||||  |||||
T Consensus        19 ~~~~~~~~~~r~--~~~~k~k~~~l~g~Pq~kGivl~~~~~~pKKPNSA~RK~arV~L~~Ngk~vtAyIPGeG~~hnlqE   96 (143)
T 2zkq_l           19 DQKWHDKQYKKA--HLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE   96 (143)
T ss_dssp             -------CCCSC--CCCCCCCCCCSTTCSCEEEEEEEEEEEECCTTCCCEEEEEEEEESGGGCEEEEECCSSCSSCCCCT
T ss_pred             HHCCCCCHHHHH--HCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHEEEEEEEECCCEEEEEECCCCCCCCCCCC
T ss_conf             630012046665--404430258344894042478999984257887002226899990599799999179853033453


Q ss_pred             CCEEEEEC-----CCCCCCCCCEEEEEECCCCC-CCCCCCCCCCCC
Q ss_conf             67899953-----78388887547898040014-433420012112
Q gi|254780266|r   78 HSVVMLCG-----GRVKDLPGVKYRVIRGVLDA-QGVKNRKQARSR  117 (124)
Q Consensus        78 hs~VLvrG-----Grv~DlPGVry~ivRG~~D~-~gv~~Rk~~RSk  117 (124)
                      ||+|||||     ||++|||||+||||||+||+ .++.+|+++|||
T Consensus        97 hs~VlVrG~G~~gGrv~DLPGVrykvIrg~~d~l~~v~~rk~~rsk  142 (143)
T 2zkq_l           97 NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR  142 (143)
T ss_dssp             TCCEEECSSSSSSCCBTTBTTCCEECCTTSTTSCSTTTTCCCCC--
T ss_pred             CCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCHHHHHCCCCCCCC
T ss_conf             6489998467467766889972799999758119998603130589


No 3  
>>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} (A:)
Probab=86.34  E-value=0.77  Score=25.67  Aligned_cols=32  Identities=19%  Similarity=0.269  Sum_probs=27.2

Q ss_pred             EEEEEECCCCEEEEEECCCC--C--CCCCCCEEEEE
Q ss_conf             88999669969999807888--7--54646789995
Q gi|254780266|r   53 VIKARLTSGVEVIAYVPGEG--H--NLQEHSVVMLC   84 (124)
Q Consensus        53 varV~Lsng~~v~ayIPGeG--h--nlqehs~VLvr   84 (124)
                      --+|+|.||.+++|||||-=  +  .+.+.|.|+|.
T Consensus        20 ~f~V~l~dg~~~~a~i~GKmRk~ri~I~~GD~V~Ve   55 (71)
T 1ah9_A           20 MFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVE   55 (71)
T ss_dssp             EEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCE
T ss_pred             EEEEEECCCCEEEEECCCHHHEEEEEECCCCEEEEE
T ss_conf             899995799799998464233027996499999999


No 4  
>>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} (A:)
Probab=80.58  E-value=1.3  Score=24.37  Aligned_cols=45  Identities=20%  Similarity=0.370  Sum_probs=34.3

Q ss_pred             CCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCC--C--CCCCCCEEEEE
Q ss_conf             2124787567518456744243288999669969999807888--7--54646789995
Q gi|254780266|r   30 QKRGVCLRVYTVTPKKPNSALRKVIKARLTSGVEVIAYVPGEG--H--NLQEHSVVMLC   84 (124)
Q Consensus        30 qkkGVclkv~~~~PKKPNSA~RKvarV~Lsng~~v~ayIPGeG--h--nlqehs~VLvr   84 (124)
                      +.-|++++...      |.    --+|+|.||.+++|||+|-=  +  .+.+.|.|+|.
T Consensus        15 e~~G~V~~~L~------~~----~f~V~l~dg~~~~~~i~GKmrk~rI~I~~GD~V~Ve   63 (79)
T 3i4o_A           15 EVEGRVVEPLP------NA----MFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVE   63 (79)
T ss_dssp             EEEEEEEEEET------TT----EEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEE
T ss_pred             EEEEEEEEECC------CC----EEEEEECCCCEEEEECCCCEEEEEEEECCCCEEEEE
T ss_conf             99999999889------98----899997899999997145035757994499999999


No 5  
>>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein; NMR {Homo sapiens} (A:)
Probab=74.70  E-value=6.9  Score=20.11  Aligned_cols=33  Identities=12%  Similarity=0.183  Sum_probs=28.5

Q ss_pred             EEEEEECCCCEEEEEECCCC---CCCCCCCEEEEEC
Q ss_conf             88999669969999807888---7546467899953
Q gi|254780266|r   53 VIKARLTSGVEVIAYVPGEG---HNLQEHSVVMLCG   85 (124)
Q Consensus        53 varV~Lsng~~v~ayIPGeG---hnlqehs~VLvrG   85 (124)
                      ..+|.|.||.++.|+|||-=   .-+.+.+.|||.=
T Consensus        45 ~~~V~~~dg~~~l~~ipgK~Rk~iwI~~GD~VlVe~   80 (143)
T 1d7q_A           45 RLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL   80 (143)
T ss_dssp             EEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEEC
T ss_pred             EEEEEECCCCEEEEEECCCCEEEEEEECCCEEEEEC
T ss_conf             899997899899999626640257980799999941


No 6  
>>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation factor (EIF), SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II} (A:)
Probab=73.97  E-value=3.1  Score=22.16  Aligned_cols=51  Identities=16%  Similarity=0.237  Sum_probs=37.2

Q ss_pred             CCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCC---CCCCCCCEEEEE
Q ss_conf             0006862124787567518456744243288999669969999807888---754646789995
Q gi|254780266|r   24 ALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLTSGVEVIAYVPGEG---HNLQEHSVVMLC   84 (124)
Q Consensus        24 ~L~~~PqkkGVclkv~~~~PKKPNSA~RKvarV~Lsng~~v~ayIPGeG---hnlqehs~VLvr   84 (124)
                      +....-|.-|.+++...      |    -.-.|.|.||.++.|+|||-=   .-+.+.+.|||.
T Consensus        27 ~~~~~~e~~g~V~~~~G------~----~~~~V~~~dg~~~l~~ipgK~Rk~iwI~~GD~VlVe   80 (117)
T 2oqk_A           27 VFKEEGQEYGQVQRXLG------N----GRLDAYCFDGQKRLCHIRGKXRKKVWVNPGDIVLVS   80 (117)
T ss_dssp             CCCCTTEEEEEEEEEEE------T----TEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEE
T ss_pred             CCCCCCEEEEEEEEECC------C----CEEEEEECCCCEEEEEECCCCCCEEEEECCCEEEEE
T ss_conf             16999828999999739------9----789999889999999974212011798089999994


No 7  
>>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} (A:)
Probab=63.21  E-value=3.7  Score=21.67  Aligned_cols=51  Identities=16%  Similarity=0.243  Sum_probs=35.0

Q ss_pred             CCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCC---CCCCCCCEEEEE
Q ss_conf             0006862124787567518456744243288999669969999807888---754646789995
Q gi|254780266|r   24 ALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLTSGVEVIAYVPGEG---HNLQEHSVVMLC   84 (124)
Q Consensus        24 ~L~~~PqkkGVclkv~~~~PKKPNSA~RKvarV~Lsng~~v~ayIPGeG---hnlqehs~VLvr   84 (124)
                      +....-|--|.+++..      +|    -..+|.|.||.+++|+|||-=   .-+.+-|.|||.
T Consensus        15 ~~~~~~e~~~~V~~~l------G~----~~~~V~~~~G~~~la~i~gK~rk~iwI~~GD~VlV~   68 (102)
T 1jt8_A           15 PRKEENEILGIIEQML------GA----SRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVK   68 (102)
T ss_dssp             SCCSSCCEEEEEECSS------CS----SEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEEC
T ss_pred             CCCCCCEEEEEEEEEC------CC----CEEEEEECCCCEEEEEECCCEEEEEEECCCCEEEEE
T ss_conf             9998898999999982------99----889999799999999984760201585599999999


No 8  
>>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} (B:119-214,B:273-507)
Probab=55.57  E-value=4.1  Score=21.44  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=18.7

Q ss_pred             CCCEEEEEECCCCCCCCCCCEEEE
Q ss_conf             996999980788875464678999
Q gi|254780266|r   60 SGVEVIAYVPGEGHNLQEHSVVML   83 (124)
Q Consensus        60 ng~~v~ayIPGeGhnlqehs~VLv   83 (124)
                      -|-.+.+-.||.|.|||+|-.+-+
T Consensus       119 ~gI~vv~dlPgVG~NLqDH~~~~~  142 (331)
T 3fim_B          119 VGIDTIVNNPSVGRNLSDHLLLPA  142 (331)
T ss_dssp             TTCCCSEECTTTTCSBBCCEEECC
T ss_pred             CCCCEEECCCCCCCCCEECCCCCC
T ss_conf             775146336654433110122441


No 9  
>>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} (W:)
Probab=54.22  E-value=2.6  Score=22.60  Aligned_cols=47  Identities=30%  Similarity=0.502  Sum_probs=34.3

Q ss_pred             CCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCC
Q ss_conf             67442432889996699699998078887546467899953783888875478980400144
Q gi|254780266|r   45 KPNSALRKVIKARLTSGVEVIAYVPGEGHNLQEHSVVMLCGGRVKDLPGVKYRVIRGVLDAQ  106 (124)
Q Consensus        45 KPNSA~RKvarV~Lsng~~v~ayIPGeGhnlqehs~VLvrGGrv~DlPGVry~ivRG~~D~~  106 (124)
                      -||.-    -+|+|.||.+|+|||-|-           +|-.+.+=|||=+-++----||+.
T Consensus        17 lpn~~----F~V~Leng~~vla~isGK-----------mR~~~IrIl~GDrV~VE~spYDlt   63 (71)
T 1hr0_W           17 LPNAT----FRVKLDSGPEILAYISGK-----------MRMHYIRILPGDRVVVEITPYDPT   63 (71)
T ss_dssp             CTTTB----CCCEESSSCBCCCEECHH-----------HHHTCCCCCTTCEEEEECCTTCTT
T ss_pred             CCCCE----EEEEECCCCEEEEEECCH-----------HHHEEEEECCCCEEEEEECCCCCC
T ss_conf             59979----999989999999995775-----------530159875999999997745699


No 10 
>>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} (A:258-298,A:366-472)
Probab=41.66  E-value=8  Score=19.74  Aligned_cols=40  Identities=25%  Similarity=0.350  Sum_probs=27.4

Q ss_pred             CCCEEEEEECCCCCCCCCC-C--EEEEECC-CCCCCCCCEEEEE
Q ss_conf             9969999807888754646-7--8999537-8388887547898
Q gi|254780266|r   60 SGVEVIAYVPGEGHNLQEH-S--VVMLCGG-RVKDLPGVKYRVI   99 (124)
Q Consensus        60 ng~~v~ayIPGeGhnlqeh-s--~VLvrGG-rv~DlPGVry~iv   99 (124)
                      .|-.+..-.||.|+|||+| |  .|-++-. -.-|-|=|.+...
T Consensus        23 ~gI~~~~~lp~VG~nl~dh~SRG~V~L~S~~dP~~~P~Id~nyl   66 (148)
T 1ju2_A           23 LNIPVVLSHPYVGQFLHDNLSYGSLTLKSSSNVRVSPNVKFNYY   66 (148)
T ss_dssp             TTCCCSEECTTTTEEEECCSCCEEEECSCSSCTTSCCEECCCTT
T ss_pred             CCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf             49964843777466532376567401025643234755565644


No 11 
>>1so7_A Sialidase 2; neuraminidase, ganglioside, sugar-induced form, hydrolase; 1.49A {Homo sapiens} (A:1-79,A:271-382)
Probab=41.18  E-value=28  Score=16.53  Aligned_cols=34  Identities=15%  Similarity=0.227  Sum_probs=29.4

Q ss_pred             CCEEEEEEECCCCEEEEEECCCCCCCCCCCEEEE
Q ss_conf             4328899966996999980788875464678999
Q gi|254780266|r   50 LRKVIKARLTSGVEVIAYVPGEGHNLQEHSVVML   83 (124)
Q Consensus        50 ~RKvarV~Lsng~~v~ayIPGeGhnlqehs~VLv   83 (124)
                      -|==|-+.+++...+.||.-+-.|+-+||..+||
T Consensus        22 yRiPal~~~~~~~t~LAfae~R~~~~D~~a~~lv   55 (191)
T 1so7_A           22 YRIPALLYLPGQQSLLAFAEQRASKKDEHAELIV   55 (191)
T ss_dssp             EEEEEEEEETTTTEEEEEEEECC-------CEEE
T ss_pred             EEECEEEEECCCCEEEEEEEECCCCCCCCCCEEE
T ss_conf             8637699977999999999551688778876489


No 12 
>>1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} (A:1-160,A:231-310)
Probab=34.39  E-value=15  Score=18.08  Aligned_cols=16  Identities=19%  Similarity=0.239  Sum_probs=10.2

Q ss_pred             CCCCEEEEEECCCCCC
Q ss_conf             6996999980788875
Q gi|254780266|r   59 TSGVEVIAYVPGEGHN   74 (124)
Q Consensus        59 sng~~v~ayIPGeGhn   74 (124)
                      .+.+-+.-+++|.+.+
T Consensus        44 ~~~~p~VVliHG~~~s   59 (240)
T 1b6g_A           44 SDAEDVFLCLHGEPTW   59 (240)
T ss_dssp             TTCSCEEEECCCTTCC
T ss_pred             CCCCCEEEEECCCCCC
T ss_conf             8999889998999876


No 13 
>>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, target T1521, PSI, protein structure initiative; 2.60A {Escherichia coli} (A:1-37,A:160-261)
Probab=29.07  E-value=45  Score=15.36  Aligned_cols=49  Identities=27%  Similarity=0.446  Sum_probs=33.3

Q ss_pred             CCEEEEEECCCCCC-----CCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf             96999980788875-----46467899953783888875478980400144334
Q gi|254780266|r   61 GVEVIAYVPGEGHN-----LQEHSVVMLCGGRVKDLPGVKYRVIRGVLDAQGVK  109 (124)
Q Consensus        61 g~~v~ayIPGeGhn-----lqehs~VLvrGGrv~DlPGVry~ivRG~~D~~gv~  109 (124)
                      ..-|..|-|||-|+     .|||...|..|-.+-.|----.-+-.|-|-|.|..
T Consensus        58 n~hi~~f~pg~~~~~~e~h~~~hg~~~l~gqgiy~l~~~w~~~~~~~~~~~~~~  111 (139)
T 1rc6_A           58 NMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAY  111 (139)
T ss_dssp             EEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSCEEEEETTCEEEECSS
T ss_pred             EEEEEEECCCCEEEEEEECCCEEEEEEECCEEEEEECCEEEEECCCCEEEECCC
T ss_conf             999999889924410260252079999687899998999999579989998999


No 14 
>>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} (A:59-215,A:270-482)
Probab=27.24  E-value=15  Score=18.13  Aligned_cols=49  Identities=24%  Similarity=0.285  Sum_probs=32.6

Q ss_pred             CCCCEEEEEECCCCCCCCCCCEEEEEC----------------------CCCCCCCCCEEEEEECCCCCCC
Q ss_conf             699699998078887546467899953----------------------7838888754789804001443
Q gi|254780266|r   59 TSGVEVIAYVPGEGHNLQEHSVVMLCG----------------------GRVKDLPGVKYRVIRGVLDAQG  107 (124)
Q Consensus        59 sng~~v~ayIPGeGhnlqehs~VLvrG----------------------Grv~DlPGVry~ivRG~~D~~g  107 (124)
                      +.|-.+....|+.|.|||+|-.+.+-.                      +.-...+++.+....+..+..+
T Consensus       179 ~~GI~vv~d~p~VG~nL~DHp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (370)
T 2jbv_A          179 EHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPMVAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNT  249 (370)
T ss_dssp             HTTCCCSEECTTTTCSBBCCEECCEEEEESSCCCSCCSSSCCEEEEECSSTTCSSCSEEEEEESSCCCTTT
T ss_pred             CCCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCCCCCCC
T ss_conf             27970685376654444447420245540266301011144416523265334575520033222233223


No 15 
>>1cf3_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.90A {Aspergillus niger} (A:64-115,A:180-227,A:323-531)
Probab=27.12  E-value=19  Score=17.58  Aligned_cols=37  Identities=14%  Similarity=0.111  Sum_probs=25.5

Q ss_pred             CCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEEEE
Q ss_conf             4424328899966996999980788875464678999
Q gi|254780266|r   47 NSALRKVIKARLTSGVEVIAYVPGEGHNLQEHSVVML   83 (124)
Q Consensus        47 NSA~RKvarV~Lsng~~v~ayIPGeGhnlqehs~VLv   83 (124)
                      +|++.--..+--+.|-.++.-.||.|.|||+|-.+-+
T Consensus        76 ~~g~g~~~~~l~~~g~~~i~~~~gVG~NLqDH~~~~v  112 (309)
T 1cf3_A           76 DFGCGDPHGVSMFPNTLHEDQVRSDGLNLQDQTTATV  112 (309)
T ss_dssp             CTTSSCCCEEECCCBSBCTTCBBCCTCCBBCCEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             6556666532112332212222332676357665268


No 16 
>>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} (A:1-67)
Probab=26.30  E-value=50  Score=15.06  Aligned_cols=42  Identities=14%  Similarity=0.227  Sum_probs=28.4

Q ss_pred             CCCCCEEEEEEECCCCEEEEEECCCCC--CC----------CCCCEEEEECCCC
Q ss_conf             442432889996699699998078887--54----------6467899953783
Q gi|254780266|r   47 NSALRKVIKARLTSGVEVIAYVPGEGH--NL----------QEHSVVMLCGGRV   88 (124)
Q Consensus        47 NSA~RKvarV~Lsng~~v~ayIPGeGh--nl----------qehs~VLvrGGrv   88 (124)
                      +|.+-|-.+|+|++|+++....-|.-+  ||          .....|+|||..+
T Consensus         6 ~~~l~k~V~V~l~dgr~~~G~L~~~D~~~NlvL~da~E~~~~~~G~v~irG~~I   59 (67)
T 1m5q_A            6 NNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKAGEKFNRVFIXYRYI   59 (67)
T ss_dssp             HHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTTCCEEEEEEECGGGE
T ss_pred             HHHCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCEEEEECCCE
T ss_conf             762798699999999899999999879965699157987898456699937938


No 17 
>>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein structure initiative; 2.05A {Enterococcus faecalis V583} (A:1-39,A:161-274)
Probab=24.65  E-value=54  Score=14.88  Aligned_cols=47  Identities=23%  Similarity=0.455  Sum_probs=39.0

Q ss_pred             CCEEEEEECCCCCC-----CCCCCEEEEECCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             96999980788875-----464678999537838888754789804001443
Q gi|254780266|r   61 GVEVIAYVPGEGHN-----LQEHSVVMLCGGRVKDLPGVKYRVIRGVLDAQG  107 (124)
Q Consensus        61 g~~v~ayIPGeGhn-----lqehs~VLvrGGrv~DlPGVry~ivRG~~D~~g  107 (124)
                      ...|..|-||..|.     +|||..-||.|-.+-.|-.--|-+-.|-|-|-.
T Consensus        62 nmhilsfepgashayiethvqehgaylisgqgmynldnewypvekgdyifms  113 (153)
T 1sef_A           62 NMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMS  113 (153)
T ss_dssp             EEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTEEEEEETTCEEEEC
T ss_pred             EEEEEEECCCEECCCCCCCCCCEEEEEECCEEEEEECCEEEEECCCCEEEEC
T ss_conf             8999999998066653179865699998578999999999996699899989


No 18 
>>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} (A:14-46)
Probab=23.17  E-value=46  Score=15.30  Aligned_cols=22  Identities=23%  Similarity=0.456  Sum_probs=14.6

Q ss_pred             CCCCC-CCEEEEECCCCC-CCCCC
Q ss_conf             75464-678999537838-88875
Q gi|254780266|r   73 HNLQE-HSVVMLCGGRVK-DLPGV   94 (124)
Q Consensus        73 hnlqe-hs~VLvrGGrv~-DlPGV   94 (124)
                      |.+.. -.+||+|||++. .|=||
T Consensus         4 H~iv~~dG~~i~kggktGPNLyGv   27 (33)
T 1vyd_A            4 HSIIAPDGTEIVKGAKTGPNLYGV   27 (33)
T ss_dssp             CCEECTTSCEEECCCSSSCCCTTC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             634677653345666668533673


Done!