RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780266|ref|YP_003064679.1| 30S ribosomal protein S12
[Candidatus Liberibacter asiaticus str. psy62]
         (124 letters)



>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus
           thermophilus [TaxId: 274]}
          Length = 118

 Score =  164 bits (417), Expect = 2e-42
 Identities = 82/118 (69%), Positives = 98/118 (83%), Gaps = 1/118 (0%)

Query: 2   PTVNQLIRKPRKGSFRACAKVTALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLTSG 61
           PT+NQL+RK R+   R  +KV AL+G P +RGVC  V TVTPKKPNSALRKV K RLTSG
Sbjct: 1   PTINQLVRKGRE-KVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSG 59

Query: 62  VEVIAYVPGEGHNLQEHSVVMLCGGRVKDLPGVKYRVIRGVLDAQGVKNRKQARSRYG 119
            EV AY+PGEGHNLQEHSVV++ GGRVKDLPGV+Y ++RGV DA GVK+RK++RS+YG
Sbjct: 60  YEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYG 117


>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
           (Prunus dulcis) [TaxId: 3755]}
          Length = 351

 Score = 32.6 bits (73), Expect = 0.010
 Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 2/35 (5%)

Query: 61  GVEVIAYVPGEGHNLQEHSVVMLCGGRVKDLPGVK 95
            + V+   P  G  L     V+    RV  +  ++
Sbjct: 281 NIPVVLSHPYVGQCLVGK--VLDGDFRVTGINALR 313


>d1sdwa1 b.121.1.2 (A:45-198) Peptidylglycine alpha-hydroxylating
          monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 154

 Score = 27.3 bits (60), Expect = 0.42
 Identities = 10/58 (17%), Positives = 22/58 (37%)

Query: 36 LRVYTVTPKKPNSALRKVIKARLTSGVEVIAYVPGEGHNLQEHSVVMLCGGRVKDLPG 93
          +R+  VTPK+ ++     ++  +     VI + P    +   H ++  C         
Sbjct: 22 IRMPGVTPKESDTYFCMSMRLPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSY 79


>d2hlya1 d.3.1.19 (A:5-206) Hypothetical protein Atu2299
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 202

 Score = 24.5 bits (53), Expect = 3.2
 Identities = 6/17 (35%), Positives = 8/17 (47%)

Query: 96  YRVIRGVLDAQGVKNRK 112
           YRVI  +L +Q      
Sbjct: 12  YRVINSLLISQNADPAS 28


>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
          {Escherichia coli [TaxId: 562]}
          Length = 320

 Score = 24.3 bits (52), Expect = 3.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 47 NSALRKVIKARLTSGVEVIAYVPG 70
          N+A+R V+++ LT G+EV+    G
Sbjct: 18 NAAIRGVVRSALTEGLEVMGIYDG 41


>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 319

 Score = 23.1 bits (49), Expect = 6.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 47 NSALRKVIKARLTSGVEVIAYVPG 70
          N+A+R V++  +  GVEV     G
Sbjct: 17 NAAIRSVVRKAIYHGVEVYGVYHG 40


>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain
          {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 327

 Score = 23.1 bits (50), Expect = 7.5
 Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 8/34 (23%)

Query: 32 RGVCLR--------VYTVTPKKPNSALRKVIKAR 57
          + +C+R        V  +    P++ +R+ I A 
Sbjct: 33 KFICIREKVGEQAQVVIIDMNDPSNPIRRPISAD 66


>d1to6a_ c.141.1.1 (A:) Glycerate kinase GlxK {Neisseria
           meningitidis, (serogroup A) [TaxId: 487]}
          Length = 371

 Score = 23.0 bits (49), Expect = 7.8
 Identities = 7/40 (17%), Positives = 18/40 (45%)

Query: 49  ALRKVIKARLTSGVEVIAYVPGEGHNLQEHSVVMLCGGRV 88
            L    +A + SG++    +      + +  +V++  GR+
Sbjct: 250 GLCAFAQASIVSGIDTCLDLIDFDKKVSDVDLVIVGEGRL 289


>d1s48a_ e.8.1.4 (A:) Viral RNA polymerase {Bovine viral diarrhea
           virus [TaxId: 11099]}
          Length = 588

 Score = 22.9 bits (49), Expect = 9.0
 Identities = 9/26 (34%), Positives = 11/26 (42%)

Query: 51  RKVIKARLTSGVEVIAYVPGEGHNLQ 76
             V   RL S      Y+P +G  LQ
Sbjct: 554 WLVKPDRLISSKTGHLYIPDKGFTLQ 579


>d1yw6a1 c.56.5.7 (A:1-322) Succinylglutamate desuccinylase AstE
          {Escherichia coli [TaxId: 562]}
          Length = 322

 Score = 22.7 bits (48), Expect = 9.5
 Identities = 5/27 (18%), Positives = 11/27 (40%)

Query: 4  VNQLIRKPRKGSFRACAKVTALRGNPQ 30
          ++ L+     G      ++  + GNP 
Sbjct: 63 LDALLGAISHGEIPLRWRLLVILGNPP 89


>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
          {Methylobacterium extorquens [TaxId: 408]}
          Length = 323

 Score = 22.5 bits (47), Expect = 9.9
 Identities = 5/21 (23%), Positives = 10/21 (47%)

Query: 1  MPTVNQLIRKPRKGSFRACAK 21
          +P ++ L  +   G   A A+
Sbjct: 1  LPDMDTLRERLLAGDRAALAR 21


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 442,625
Number of extensions: 19099
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 12
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)