HHsearch alignment for GI: 254780267 and conserved domain: COG1566

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms].
Probab=96.97  E-value=0.00084  Score=43.48  Aligned_cols=34  Identities=38%  Similarity=0.614  Sum_probs=25.6

Q ss_pred             EEECCCCCEEEEEECCCCCCCCCCCEEEEEEECC
Q ss_conf             9998998199999848986836997299995347
Q gi|254780267|r  135 HIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTG  168 (171)
Q Consensus       135 ~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~~  168 (171)
T Consensus        55 ~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~~   88 (352)
T COG1566          55 PIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPRD   88 (352)
T ss_pred             EECCCCCEEEEEEEECCCCEECCCCEEEEECCHH
T ss_conf             9837673589999916898851897689989578