HHsearch alignment for GI: 254780267 and conserved domain: PRK09603

>PRK09603 DNA-directed RNA polymerase subunit beta/beta'; Reviewed.
Probab=92.95  E-value=0.12  Score=30.33  Aligned_cols=57  Identities=26%  Similarity=0.332  Sum_probs=44.2

Q ss_pred             CCCCCEECCCCCEEECCEEEE---------------------EECC--C-EEEEEECCCCCEEE----------------
Q ss_conf             764100012442010434899---------------------9737--7-26899989981999----------------
Q gi|254780267|r  106 PGSDPFVNKGNLVVEGQTLLI---------------------IEAM--K-TMNHIVAPCSGKVQ----------------  145 (171)
Q Consensus       106 P~~~~~V~vGd~Vk~G~~l~i---------------------iEAM--K-m~n~I~a~~~G~I~----------------  145 (171)
T Consensus      2612 ~~a~l~V~dG~~V~~GdiLakl~~e~~kt~DIt~GLPRV~ELfEAR~~KPK~~ailae~~G~V~~g~~~~~~~~iii~~~ 2691 (2890)
T PRK09603       2612 PKTSIAISDGSSVEQAEVLAKIPKATVKSRDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSK 2691 (2890)
T ss_pred             CCCEEEECCCCEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCCEEEECCCCCCCEEEEEECC
T ss_conf             99789966999960587689710221567866488860598775134688874389536518995653478526999769


Q ss_pred             -------------EEECCCCCCCCCCCEEE
Q ss_conf             -------------99848986836997299
Q gi|254780267|r  146 -------------DINVKDGQSVEYGDALL  162 (171)
Q Consensus       146 -------------~i~v~~G~~V~~gq~L~  162 (171)
T Consensus      2692 dg~~~ey~i~~g~~l~V~~Gd~V~~Ge~Lt 2721 (2890)
T PRK09603       2692 DGRSMDYFVDKGKQILVHADEFVHAGEAMT 2721 (2890)
T ss_pred             CCCEEEEECCCCCEEEECCCCEEECCCCCC
T ss_conf             994777754899877767998870688823