HHsearch alignment for GI: 254780267 and conserved domain: PRK11578
>PRK11578 macrolide transporter subunit MacA; Provisional.
Probab=98.29 E-value=9.6e-07 Score=61.37 Aligned_cols=74 Identities=27% Similarity=0.333 Sum_probs=59.5
Q ss_pred CCCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECC-----------------------------------
Q ss_conf 546626870462567740367641000124420104348999737-----------------------------------
Q gi|254780267|r 86 PDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAM----------------------------------- 130 (171)
Q Consensus 86 ~~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAM----------------------------------- 130 (171)
T Consensus 35 a~~~~~i~a~v~G~I-------~~i~v~~Gd~V~kGqvL~~ld~~~~~~~l~~a~a~l~~~~a~l~~a~~~~~~a~~~~~ 107 (347)
T PRK11578 35 ALRKVDVGAQVSGQL-------KTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELNAQRQQAEAELKLARVTLS 107 (347)
T ss_pred EEEEEEEECCCCEEE-------EEEECCCCCEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 838999974077899-------9999899398889999999874999999999999999999999999999999899999
Q ss_pred --------------------------C------------------------EEEEEECCCCCEEEEEECCCCCCCCCCCE
Q ss_conf --------------------------7------------------------26899989981999998489868369972
Q gi|254780267|r 131 --------------------------K------------------------TMNHIVAPCSGKVQDINVKDGQSVEYGDA 160 (171)
Q Consensus 131 --------------------------K------------------------m~n~I~a~~~G~I~~i~v~~G~~V~~gq~ 160 (171)
T Consensus 108 r~~~L~~~~~is~~~~d~a~~~~~~~~a~l~~~~a~~~~~~a~l~~a~~~l~~t~I~AP~~GvV~~~~~~~G~~v~~~~~ 187 (347)
T PRK11578 108 RQQRLAKTQAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQ 187 (347)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEEEECCCEEECCCC
T ss_conf 99999875762478898878799987645889999999999999999876525699825784486799833988863788
Q ss_pred ---EEEEEE
Q ss_conf ---999953
Q gi|254780267|r 161 ---LLVLEK 166 (171)
Q Consensus 161 ---L~~i~~ 166 (171)
T Consensus 188 ~~~l~~i~~ 196 (347)
T PRK11578 188 APNILTLAD 196 (347)
T ss_pred CCEEEEECC
T ss_conf 741357316