HHsearch alignment for GI: 254780267 and conserved domain: TIGR03077
>TIGR03077 not_gcvH glycine cleavage protein H homolog, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.65 E-value=7.8e-05 Score=49.78 Aligned_cols=58 Identities=28% Similarity=0.506 Sum_probs=47.6
Q ss_pred ECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECC---CCCCCC---CCC-EEEEEEECCC
Q ss_conf 012442010434899973772689998998199999848---986836---997-2999953478
Q gi|254780267|r 112 VNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVK---DGQSVE---YGD-ALLVLEKTGD 169 (171)
Q Consensus 112 V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~---~G~~V~---~gq-~L~~i~~~~~ 169 (171)
T Consensus 38 p~~G~~v~~g~~~~~vEs~K~~~~i~sPvsG~VvevN~~l~~~P~liN~dpy~~gWl~~vk~~d~ 102 (110)
T TIGR03077 38 PSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDDTQPINHSPESEGWFVVVQLDED 102 (110)
T ss_pred CCCCCEEECCCEEEEEEECEEEECCCCCCCEEEEEEHHHHHHCHHHHCCCCCCCCEEEEEEECCH
T ss_conf 89999885798599999651612020787669998668454498987289777965999999986