HHsearch results for GI: 254780267 and protein with PDBid: 2auk_A

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=96.39  E-value=0.0034  Score=38.48  Aligned_cols=45  Identities=24%  Similarity=0.305  Sum_probs=33.2

Q ss_pred             CCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCC
Q ss_conf             64100012442010434899973772689998998199999848986
Q gi|254780267|r  107 GSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQ  153 (171)
Q Consensus       107 ~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~  153 (171)
                      |+..+|+.||+|++||+||-...  -..+|.|+++|+|.---+.+|-
T Consensus        61 Ga~L~VkdG~~Vk~g~~la~WDP--~~~pIisE~~G~v~f~Di~egv  105 (190)
T 2auk_A           61 GAVLAKGDGEQVAGGETVANWDP--HTMPVITEVSGFVRFTDMIDGQ  105 (190)
T ss_dssp             TCEESSCTTCEECTTCEEEECCS--SEEEEECSSCEEEEEESCCBTT
T ss_pred             CCEEEECCCCEECCCCEEEEECC--CCCEEEEEEEEEEEEEEEECCE
T ss_conf             75899869899738989998679--8852888861289999951747