HHsearch alignment for GI: 254780268 and conserved domain: COG0458
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism].
Probab=100.00 E-value=0 Score=355.41 Aligned_cols=361 Identities=25% Similarity=0.341 Sum_probs=300.4
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC---HHHCCHH
Q ss_conf 9999998888096599985855771877675857999189985300069899999998709989945853---1310976
Q gi|254780268|r 14 ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG---FLSENAK 90 (443)
Q Consensus 14 a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG---fLsEn~~ 90 (443)
T Consensus 18 G~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP--------~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~ 89 (400)
T COG0458 18 GTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEP--------ITKEPVEKIIEKERPDAILPTLGGQTALNAALE 89 (400)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEEC--------CCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHH
T ss_conf 789999998669759997288721247800053026624--------737889999975376626324687413468899
Q ss_pred HH--HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEE
Q ss_conf 66--8898459216268989998721899887766422443324333455799987320033012200023457821688
Q gi|254780268|r 91 FA--EILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRI 168 (443)
Q Consensus 91 fa--~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~v 168 (443)
T Consensus 90 l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i 168 (400)
T COG0458 90 LKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIGYPVIVKPSFGLGGSGGGI 168 (400)
T ss_pred HHHHCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCEEE
T ss_conf 8772645644977994587895564209999999998399988-412356777765576369977980685788875168
Q ss_pred EEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE------ECCC
Q ss_conf 8750668999998754321258998168844342011033157773478702365665421135622554------0344
Q gi|254780268|r 169 AYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE------EAHS 242 (443)
Q Consensus 169 v~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE------eaPa 242 (443)
T Consensus 169 ~~n~eel~~~~~~~l~~s----~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivv----c~men~dp~gvhtgdsi~vapa 240 (400)
T COG0458 169 AYNEEELEEIIEEGLRAS----PVEEVLIEESIIGWKEFEYEVVRDGKDNCIVV----CNMENLDPMGVHTGDSITVAPA 240 (400)
T ss_pred EECHHHHHHHHHHCCCCC----CCCCCEEEEEECCCEEEEEEEEEECCCCEEEE----EECCCCCCCCCCCCCEEEECCC
T ss_conf 718999999987322447----64200124421685699999998379987999----8678656566444323652145
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 558899999999999998865154341024589728--834998227654332016788632562011232221022222
Q gi|254780268|r 243 PVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYEN--GQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRLSV 320 (443)
Q Consensus 243 p~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~--~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l~~ 320 (443)
T Consensus 241 qtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrssaLaskAtgypia~vaakla~g~~l~E 320 (400)
T COG0458 241 QTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSSALASKATGYPIAKVAAKLAVGYTLDE 320 (400)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCHH
T ss_conf 56543788998887777888741147873148986998559999956876764031554468769999997503567065
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCE--EEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHH
Q ss_conf 1133332012453302456622111124421--58866899844677760238770777684338999955998999999
Q gi|254780268|r 321 QQKDITFSGHAIECRINAEDPENFIPNPGEI--TYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMR 398 (443)
Q Consensus 321 ~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i--~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~ 398 (443)
T Consensus 321 i~n~it~~t~a-----------~fePsldyvv~k~pr~~f~kf~~~~~~l~------~~mks-~gevm~igr~f~eal~k 382 (400)
T COG0458 321 IRNDITGRTPA-----------SFEPSLDYVVTKIPRFDFEKFPGADRRLG------TQMKS-VGEVMAIGRTFEEALQK 382 (400)
T ss_pred HCCCCCCCCCC-----------CCCCCCCEEEEECCCCCCCCCCCCCCCEE------EEEEC-CCEEEEECCHHHHHHHH
T ss_conf 44766444344-----------45776660366347787321345563310------02300-10289963129999999
Q ss_pred HHHHHHHCEECC
Q ss_conf 998765408826
Q gi|254780268|r 399 LNRALNEIIIDG 410 (443)
Q Consensus 399 l~~aL~~~~I~G 410 (443)
T Consensus 383 a~~~l~-~~~~~ 393 (400)
T COG0458 383 ALRSLE-IGLAG 393 (400)
T ss_pred HHHHHC-CCCCC
T ss_conf 998611-46651