HHsearch alignment for GI: 254780268 and conserved domain: TIGR02291
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase homolog; InterPro: IPR011758 Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (IPR004666 from INTERPRO), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown..
Probab=98.24 E-value=3.8e-05 Score=56.94 Aligned_cols=193 Identities=19% Similarity=0.301 Sum_probs=106.6
Q ss_pred HCHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHCC-CCH-HHHHCCCCCCCCEEEEEE---------------ECHHH
Q ss_conf 18998877664224433243334557-9998732003-301-220002345782168887---------------50668
Q gi|254780268|r 114 GDKITAKKTAQQLGIPVVPGSGEVYP-HTAMPIAKEI-GFP-VLVKASAGGGGRGMRIAY---------------SENDL 175 (443)
Q Consensus 114 gDK~~~k~~a~~~GVP~~p~~~~~~~-~ea~~~a~~i-GyP-viiKp~~gGGG~Gi~vv~---------------~~~el 175 (443)
T Consensus 36 DDKl~TK~~A~AaGi~VPelyGVI~~q~ev~~~~~ivkdh~dFVIKPAqGsGG~GIlVit~r~~~ryr~~sG~~i~~eei 115 (320)
T TIGR02291 36 DDKLKTKILAIAAGIAVPELYGVIEIQKEVKSLDDIVKDHEDFVIKPAQGSGGDGILVITDRLDERYRKSSGALISKEEI 115 (320)
T ss_pred CCHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCEECCCCCCCCHHHH
T ss_conf 31367889987336711013010023466543466627889836726606798727997036688403541010154567
Q ss_pred HHHHHHHHH--HHHCCCCCCCEEEEEEEEEEE-----------ECCEEEE---------------EECCCCCCC------
Q ss_conf 999998754--321258998168844342011-----------0331577---------------734787023------
Q gi|254780268|r 176 SEAIDQARS--EALAAFGNDAVYIEKYLENPR-----------HIEVQIF---------------GDGMGNAIH------ 221 (443)
Q Consensus 176 ~~a~~~a~~--ea~~~fgd~~vlvEk~i~~~r-----------hiEvqVl---------------~D~~g~~v~------ 221 (443)
T Consensus 116 E~hvSniL~GLySLGG-~~D~AliEyrvkfDp~F~~~SYeGVPDiRiIVf~GyPVmaM~RlpTr~SdGKAN-LHQGAvGv 193 (320)
T TIGR02291 116 ERHVSNILAGLYSLGG-KRDRALIEYRVKFDPLFESVSYEGVPDIRIIVFKGYPVMAMLRLPTRASDGKAN-LHQGAVGV 193 (320)
T ss_pred HHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCC-CCCCCEEE
T ss_conf 7888888877765079-977368853201053447711134587268964186102100276567888302-12460242
Q ss_pred ---CC-CCC-CCCCCCCCEEEEECCCCCCC-----HHHHHHHHHHHHHHHHHHC--CCCCCEEEEEEC-CCCEEEEECCC
Q ss_conf ---65-665-42113562255403445588-----9999999999999886515--434102458972-88349982276
Q gi|254780268|r 222 ---FG-ERD-CSVQRRNQKIWEEAHSPVIS-----AQDRTEIGETCVKAMKKID--YRGAGTIEFLYE-NGQFYFIEMNT 288 (443)
Q Consensus 222 ---l~-erd-CSiQrr~qkiiEeaPap~l~-----~~~~~~i~~~A~~~~~~~g--~~g~~tvEFl~~-~~~~yflEvN~ 288 (443)
T Consensus 194 GiDlaTG~t~~a~w~n~--pi~~HPDTg~~~sglq~PhW~~ll~LAa~c~el~GLGY~G---vD~VLDke~GPlvLELNA 268 (320)
T TIGR02291 194 GIDLATGKTLRAVWLNQ--PIEKHPDTGKDVSGLQVPHWEKLLKLAAECYELVGLGYLG---VDMVLDKEKGPLVLELNA 268 (320)
T ss_pred EEECCCCCEEEEEECCC--CCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCCC---EEEEEECCCCCEEEEECC
T ss_conf 02311450321242067--6145838887535101667778999998775430676002---106874579881786447
Q ss_pred CCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 543320167886325620112322210222221133332012453302
Q gi|254780268|r 289 RLQVEHPVTEAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRI 336 (443)
Q Consensus 289 Rlqveh~vte~~tgvdlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri 336 (443)
T Consensus 269 RP-----------G-----L~IQIAN~~Gl~-------~Rl~~~~a~L 293 (320)
T TIGR02291 269 RP-----------G-----LAIQIANDAGLL-------PRLKEVEAKL 293 (320)
T ss_pred CC-----------C-----CHHHHHCCCCCC-------HHHHHHHHHC
T ss_conf 88-----------7-----212231314533-------6789999640