HHsearch alignment for GI: 254780268 and conserved domain: TIGR02291

>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase homolog; InterPro: IPR011758 Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (IPR004666 from INTERPRO), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown..
Probab=98.24  E-value=3.8e-05  Score=56.94  Aligned_cols=193  Identities=19%  Similarity=0.301  Sum_probs=106.6

Q ss_pred             HCHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHCC-CCH-HHHHCCCCCCCCEEEEEE---------------ECHHH
Q ss_conf             18998877664224433243334557-9998732003-301-220002345782168887---------------50668
Q gi|254780268|r  114 GDKITAKKTAQQLGIPVVPGSGEVYP-HTAMPIAKEI-GFP-VLVKASAGGGGRGMRIAY---------------SENDL  175 (443)
Q Consensus       114 gDK~~~k~~a~~~GVP~~p~~~~~~~-~ea~~~a~~i-GyP-viiKp~~gGGG~Gi~vv~---------------~~~el  175 (443)
T Consensus        36 DDKl~TK~~A~AaGi~VPelyGVI~~q~ev~~~~~ivkdh~dFVIKPAqGsGG~GIlVit~r~~~ryr~~sG~~i~~eei  115 (320)
T TIGR02291        36 DDKLKTKILAIAAGIAVPELYGVIEIQKEVKSLDDIVKDHEDFVIKPAQGSGGDGILVITDRLDERYRKSSGALISKEEI  115 (320)
T ss_pred             CCHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCEECCCCCCCCHHHH
T ss_conf             31367889987336711013010023466543466627889836726606798727997036688403541010154567


Q ss_pred             HHHHHHHHH--HHHCCCCCCCEEEEEEEEEEE-----------ECCEEEE---------------EECCCCCCC------
Q ss_conf             999998754--321258998168844342011-----------0331577---------------734787023------
Q gi|254780268|r  176 SEAIDQARS--EALAAFGNDAVYIEKYLENPR-----------HIEVQIF---------------GDGMGNAIH------  221 (443)
Q Consensus       176 ~~a~~~a~~--ea~~~fgd~~vlvEk~i~~~r-----------hiEvqVl---------------~D~~g~~v~------  221 (443)
T Consensus       116 E~hvSniL~GLySLGG-~~D~AliEyrvkfDp~F~~~SYeGVPDiRiIVf~GyPVmaM~RlpTr~SdGKAN-LHQGAvGv  193 (320)
T TIGR02291       116 ERHVSNILAGLYSLGG-KRDRALIEYRVKFDPLFESVSYEGVPDIRIIVFKGYPVMAMLRLPTRASDGKAN-LHQGAVGV  193 (320)
T ss_pred             HHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCC-CCCCCEEE
T ss_conf             7888888877765079-977368853201053447711134587268964186102100276567888302-12460242


Q ss_pred             ---CC-CCC-CCCCCCCCEEEEECCCCCCC-----HHHHHHHHHHHHHHHHHHC--CCCCCEEEEEEC-CCCEEEEECCC
Q ss_conf             ---65-665-42113562255403445588-----9999999999999886515--434102458972-88349982276
Q gi|254780268|r  222 ---FG-ERD-CSVQRRNQKIWEEAHSPVIS-----AQDRTEIGETCVKAMKKID--YRGAGTIEFLYE-NGQFYFIEMNT  288 (443)
Q Consensus       222 ---l~-erd-CSiQrr~qkiiEeaPap~l~-----~~~~~~i~~~A~~~~~~~g--~~g~~tvEFl~~-~~~~yflEvN~  288 (443)
T Consensus       194 GiDlaTG~t~~a~w~n~--pi~~HPDTg~~~sglq~PhW~~ll~LAa~c~el~GLGY~G---vD~VLDke~GPlvLELNA  268 (320)
T TIGR02291       194 GIDLATGKTLRAVWLNQ--PIEKHPDTGKDVSGLQVPHWEKLLKLAAECYELVGLGYLG---VDMVLDKEKGPLVLELNA  268 (320)
T ss_pred             EEECCCCCEEEEEECCC--CCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCCC---EEEEEECCCCCEEEEECC
T ss_conf             02311450321242067--6145838887535101667778999998775430676002---106874579881786447


Q ss_pred             CCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf             543320167886325620112322210222221133332012453302
Q gi|254780268|r  289 RLQVEHPVTEAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRI  336 (443)
Q Consensus       289 Rlqveh~vte~~tgvdlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri  336 (443)
T Consensus       269 RP-----------G-----L~IQIAN~~Gl~-------~Rl~~~~a~L  293 (320)
T TIGR02291       269 RP-----------G-----LAIQIANDAGLL-------PRLKEVEAKL  293 (320)
T ss_pred             CC-----------C-----CHHHHHCCCCCC-------HHHHHHHHHC
T ss_conf             88-----------7-----212231314533-------6789999640