Query gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 443
No_of_seqs 236 out of 5391
Neff 6.1
Searched_HMMs 39220
Date Tue May 24 17:31:36 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780268.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00514 accC acetyl-CoA carb 100.0 0 0 1387.3 29.8 441 1-441 1-447 (451)
2 TIGR02712 urea_carbox urea car 100.0 0 0 1307.6 30.0 438 2-439 1-450 (1226)
3 TIGR01235 pyruv_carbox pyruvat 100.0 0 0 1295.6 27.8 437 4-440 1-456 (1169)
4 PRK08591 acetyl-CoA carboxylas 100.0 0 0 1247.5 42.1 442 1-442 1-444 (449)
5 PRK12999 pyruvate carboxylase; 100.0 0 0 1244.8 36.3 440 1-440 4-455 (1147)
6 COG4770 Acetyl/propionyl-CoA c 100.0 0 0 1247.7 28.0 443 1-443 1-447 (645)
7 PRK06111 acetyl-CoA carboxylas 100.0 0 0 1230.5 39.0 443 1-443 1-446 (449)
8 PRK08654 pyruvate carboxylase 100.0 0 0 1228.6 39.9 440 1-440 1-443 (497)
9 PRK07178 acetyl-CoA carboxylas 100.0 0 0 1221.4 38.7 440 1-441 1-443 (471)
10 PRK05586 biotin carboxylase; V 100.0 0 0 1219.2 39.1 442 1-442 1-446 (447)
11 PRK08463 acetyl-CoA carboxylas 100.0 0 0 1221.4 37.3 442 1-443 1-447 (478)
12 PRK08462 biotin carboxylase; V 100.0 0 0 1203.4 39.6 440 1-441 3-446 (446)
13 PRK12833 acetyl-CoA carboxylas 100.0 0 0 1204.1 38.4 441 2-443 5-450 (458)
14 KOG0238 consensus 100.0 0 0 1167.8 28.5 439 5-443 1-444 (670)
15 COG1038 PycA Pyruvate carboxyl 100.0 0 0 1113.1 31.0 440 1-440 6-457 (1149)
16 COG0439 AccC Biotin carboxylas 100.0 0 0 1007.1 37.2 442 1-442 1-446 (449)
17 KOG0369 consensus 100.0 0 0 1018.3 28.2 439 2-440 33-480 (1176)
18 KOG0368 consensus 100.0 0 0 817.0 29.1 439 1-443 53-553 (2196)
19 TIGR01369 CPSaseII_lrg carbamo 100.0 0 0 534.1 24.3 373 2-411 6-407 (1089)
20 TIGR01369 CPSaseII_lrg carbamo 100.0 0 0 450.7 23.2 370 3-429 574-986 (1089)
21 PRK12815 carB carbamoyl phosph 100.0 0 0 432.6 29.3 388 2-426 7-429 (1068)
22 PRK05294 carB carbamoyl phosph 100.0 0 0 432.4 29.3 390 2-426 7-427 (1063)
23 PRK05294 carB carbamoyl phosph 100.0 0 0 400.5 25.8 298 3-321 554-871 (1063)
24 PRK12815 carB carbamoyl phosph 100.0 0 0 393.7 27.9 295 3-321 555-869 (1068)
25 pfam02786 CPSase_L_D2 Carbamoy 100.0 0 0 382.8 16.5 206 115-320 1-210 (211)
26 PRK09288 purT phosphoribosylgl 100.0 0 0 360.4 31.7 379 2-410 12-394 (395)
27 COG0458 CarB Carbamoylphosphat 100.0 0 0 355.4 26.0 361 14-410 18-393 (400)
28 PRK12767 carbamoyl phosphate s 100.0 4E-42 0 319.5 25.0 289 2-318 1-296 (325)
29 KOG0370 consensus 100.0 3.1E-43 0 327.5 11.1 380 2-421 377-784 (1435)
30 PRK06019 phosphoribosylaminoim 100.0 1.3E-35 3.4E-40 273.3 29.7 362 2-410 7-375 (377)
31 TIGR01205 D_ala_D_alaTIGR D-al 100.0 6.1E-36 1.5E-40 275.7 18.6 251 14-289 20-343 (375)
32 PRK02186 argininosuccinate lya 100.0 2.3E-33 5.8E-38 257.4 28.8 362 8-403 10-393 (892)
33 PRK01372 ddl D-alanine--D-alan 100.0 8.5E-35 2.2E-39 267.5 21.1 246 1-289 3-269 (304)
34 KOG0370 consensus 100.0 2.4E-35 6.2E-40 271.4 15.4 356 4-397 920-1313(1435)
35 COG0027 PurT Formate-dependent 100.0 1.9E-32 5E-37 250.8 27.1 366 3-410 13-394 (394)
36 pfam00289 CPSase_L_chain Carba 100.0 7.7E-36 2E-40 274.9 9.6 109 2-110 1-109 (109)
37 pfam02785 Biotin_carb_C Biotin 100.0 4.1E-36 1E-40 276.9 4.9 106 333-438 1-107 (107)
38 PRK01966 ddl D-alanyl-alanine 100.0 3.3E-32 8.4E-37 249.1 19.1 275 2-289 3-311 (344)
39 smart00878 Biotin_carb_C Bioti 100.0 6.2E-35 1.6E-39 268.5 4.5 106 333-438 1-107 (107)
40 TIGR01161 purK phosphoribosyla 100.0 2.9E-31 7.5E-36 242.4 22.5 263 4-291 1-286 (386)
41 PRK07206 hypothetical protein; 100.0 6.9E-29 1.8E-33 225.6 26.2 390 1-410 1-410 (415)
42 COG0026 PurK Phosphoribosylami 100.0 8.6E-29 2.2E-33 224.9 24.3 293 2-320 1-297 (375)
43 PRK13789 phosphoribosylamine-- 100.0 5.6E-27 1.4E-31 212.0 28.6 374 4-410 6-414 (426)
44 PRK13790 phosphoribosylamine-- 100.0 1.1E-26 2.8E-31 210.0 26.2 371 4-411 2-401 (415)
45 PRK00885 phosphoribosylamine-- 100.0 2.1E-25 5.2E-30 200.9 30.1 375 4-410 2-407 (424)
46 pfam01071 GARS_A Phosphoribosy 100.0 8.7E-28 2.2E-32 217.7 15.4 174 114-291 1-189 (193)
47 pfam02222 ATP-grasp ATP-grasp 100.0 3.3E-28 8.5E-33 220.7 13.2 162 123-294 1-164 (171)
48 COG0151 PurD Phosphoribosylami 100.0 3.7E-25 9.3E-30 199.1 26.9 373 4-411 2-412 (428)
49 pfam07478 Dala_Dala_lig_C D-al 99.9 1.5E-27 3.9E-32 216.0 11.3 162 122-291 1-174 (201)
50 PRK05784 phosphoribosylamine-- 99.9 1.2E-23 3.1E-28 188.3 27.8 373 4-410 2-432 (485)
51 PRK06395 phosphoribosylamine-- 99.9 1.4E-23 3.7E-28 187.8 27.1 364 1-407 1-408 (435)
52 COG1181 DdlA D-alanine-D-alani 99.9 1E-24 2.5E-29 196.0 17.1 248 14-292 23-288 (317)
53 TIGR00877 purD phosphoribosyla 99.9 6.2E-23 1.6E-27 183.3 18.4 374 4-411 2-447 (459)
54 pfam08443 RimK RimK-like ATP-g 99.9 2.7E-23 6.8E-28 185.9 14.7 179 113-309 1-186 (190)
55 PRK06849 hypothetical protein; 99.9 1.5E-20 3.9E-25 166.3 20.9 279 3-313 5-290 (387)
56 pfam02655 ATP-grasp_3 ATP-gras 99.9 2.2E-21 5.7E-26 172.2 10.9 156 113-292 1-159 (160)
57 PRK10446 ribosomal protein S6 99.9 2.4E-19 6.1E-24 157.8 20.2 272 4-312 2-285 (300)
58 COG2232 Predicted ATP-dependen 99.9 1.8E-19 4.6E-24 158.7 19.4 339 3-404 12-370 (389)
59 KOG0237 consensus 99.8 5.2E-18 1.3E-22 148.3 24.2 384 1-418 1-425 (788)
60 TIGR00768 rimK_fam alpha-L-glu 99.8 9.8E-19 2.5E-23 153.4 18.5 270 12-312 18-320 (321)
61 TIGR02144 LysX_arch Lysine bio 99.8 2.8E-19 7.1E-24 157.3 14.3 247 17-314 15-284 (289)
62 TIGR01142 purT phosphoribosylg 99.8 3E-17 7.7E-22 142.8 19.2 378 4-408 1-406 (407)
63 COG0189 RimK Glutathione synth 99.7 5.6E-16 1.4E-20 133.9 17.9 274 15-312 20-310 (318)
64 TIGR03103 trio_acet_GNAT GNAT- 99.7 1.2E-16 3.1E-21 138.6 13.0 261 4-290 195-522 (547)
65 TIGR02068 cya_phycin_syn cyano 99.7 1.5E-17 3.9E-22 144.9 6.7 156 46-225 157-322 (876)
66 PRK02471 bifunctional glutamat 99.4 2.2E-12 5.6E-17 108.4 11.4 213 61-290 433-727 (753)
67 PRK06524 biotin carboxylase-li 99.4 2.3E-12 5.8E-17 108.2 11.3 229 62-302 78-321 (480)
68 COG1821 Predicted ATP-utilizin 99.4 1.5E-12 3.8E-17 109.5 10.3 185 63-291 63-257 (307)
69 COG3919 Predicted ATP-grasp en 99.3 9.7E-11 2.5E-15 96.6 14.9 271 17-317 18-314 (415)
70 PRK13278 purP 5-formaminoimida 99.2 4.3E-09 1.1E-13 84.9 15.9 256 12-291 27-311 (356)
71 PRK13277 5-formaminoimidazole- 99.1 3.3E-08 8.5E-13 78.6 17.7 256 12-291 23-317 (363)
72 COG1759 5-formaminoimidazole-4 99.0 1.5E-07 3.9E-12 73.9 16.3 252 13-291 28-316 (361)
73 pfam08442 ATP-grasp_2 ATP-gras 98.9 3.7E-09 9.4E-14 85.4 6.1 164 117-289 5-200 (202)
74 PRK00696 sucC succinyl-CoA syn 98.7 8.6E-08 2.2E-12 75.7 8.3 103 117-219 6-120 (388)
75 COG0045 SucC Succinyl-CoA synt 98.7 4.2E-08 1.1E-12 77.9 6.0 167 117-290 6-200 (387)
76 TIGR01016 sucCoAbeta succinyl- 98.6 2E-07 5.2E-12 73.1 8.2 178 117-315 6-219 (389)
77 PRK05246 glutathione synthetas 98.3 1.9E-05 4.9E-10 59.0 11.5 265 11-310 18-306 (316)
78 pfam02955 GSH-S_ATP Prokaryoti 98.3 1.8E-05 4.6E-10 59.2 10.9 141 131-288 13-160 (176)
79 TIGR02291 rimK_rel_E_lig alpha 98.2 3.8E-05 9.7E-10 56.9 11.9 193 114-336 36-293 (320)
80 pfam05770 Ins134_P3_kin Inosit 97.4 0.0044 1.1E-07 42.3 11.4 173 98-288 77-287 (307)
81 PRK12458 glutathione synthetas 97.4 0.00094 2.4E-08 47.0 7.9 195 93-311 114-325 (349)
82 pfam11379 DUF3182 Protein of u 97.4 0.00031 7.9E-09 50.4 5.1 162 23-209 29-192 (355)
83 pfam03133 TTL Tubulin-tyrosine 96.9 0.013 3.4E-07 38.9 9.0 44 150-204 66-109 (291)
84 KOG3895 consensus 96.6 0.027 6.9E-07 36.7 8.9 202 70-289 151-366 (488)
85 pfam02844 GARS_N Phosphoribosy 96.4 0.053 1.3E-06 34.6 9.8 93 4-112 1-98 (99)
86 pfam02750 Synapsin_C Synapsin, 96.4 0.046 1.2E-06 35.0 9.5 149 124-289 27-177 (203)
87 pfam06849 DUF1246 Protein of u 95.8 0.062 1.6E-06 34.1 7.6 109 13-132 8-121 (124)
88 TIGR01380 glut_syn glutathione 95.7 0.019 4.7E-07 37.8 4.6 246 15-307 21-312 (322)
89 PRK06241 phosphoenolpyruvate s 95.6 0.11 2.8E-06 32.3 8.2 45 242-288 263-307 (870)
90 PRK06988 putative formyltransf 93.6 0.19 4.8E-06 30.7 5.3 39 1-39 1-39 (313)
91 COG1748 LYS9 Saccharopine dehy 93.4 0.75 1.9E-05 26.4 9.0 164 2-180 1-179 (389)
92 PRK09248 putative hydrolase; V 93.3 0.36 9.2E-06 28.7 6.4 16 16-31 23-38 (246)
93 PRK00912 ribonuclease P protei 93.2 0.25 6.3E-06 29.8 5.4 140 13-157 20-177 (237)
94 CHL00194 ycf39 Ycf39; Provisio 93.1 0.84 2.1E-05 26.1 12.4 169 4-185 2-192 (319)
95 cd01968 Nitrogenase_NifE_I Nit 93.1 0.76 1.9E-05 26.4 7.8 15 64-78 76-90 (410)
96 pfam09370 TIM-br_sig_trns TIM- 92.5 0.95 2.4E-05 25.7 7.7 113 56-184 90-206 (268)
97 KOG2799 consensus 92.5 0.45 1.1E-05 28.0 6.0 72 111-182 21-105 (434)
98 TIGR01241 FtsH_fam ATP-depende 92.4 0.09 2.3E-06 33.0 2.2 94 98-238 93-189 (505)
99 cd06451 AGAT_like Alanine-glyo 92.2 0.89 2.3E-05 25.9 7.2 59 348-406 290-354 (356)
100 TIGR01285 nifN nitrogenase mol 91.5 1.1 2.9E-05 25.2 7.0 140 115-266 164-328 (451)
101 KOG2157 consensus 91.4 0.65 1.7E-05 26.9 5.7 53 150-204 199-252 (497)
102 PRK10124 putative UDP-glucose 91.1 1.4 3.6E-05 24.5 8.1 113 2-135 144-263 (464)
103 cd01990 Alpha_ANH_like_I This 91.0 1.4 3.5E-05 24.5 7.1 120 11-170 39-163 (202)
104 cd01976 Nitrogenase_MoFe_alpha 90.8 1.2 3E-05 25.1 6.6 16 118-133 121-136 (421)
105 cd01965 Nitrogenase_MoFe_beta_ 90.7 1.5 3.7E-05 24.4 7.0 16 63-78 70-85 (428)
106 PRK09195 gatY tagatose-bisphos 90.1 1.7 4.3E-05 23.9 10.3 75 60-158 28-106 (284)
107 COG2099 CobK Precorrin-6x redu 89.7 1.8 4.7E-05 23.7 8.3 120 1-150 1-128 (257)
108 COG0821 gcpE 1-hydroxy-2-methy 89.6 1.2 3E-05 25.0 5.8 210 15-277 39-264 (361)
109 cd03466 Nitrogenase_NifN_2 Nit 89.5 1.4 3.5E-05 24.6 6.1 17 63-79 73-89 (429)
110 TIGR01182 eda 2-dehydro-3-deox 89.4 1.9 4.9E-05 23.5 9.2 88 5-103 13-106 (205)
111 TIGR00268 TIGR00268 conserved 88.6 1.7 4.3E-05 23.9 6.0 132 3-161 16-175 (263)
112 pfam05690 ThiG Thiazole biosyn 88.5 2.2 5.6E-05 23.1 7.2 72 120-205 115-187 (246)
113 TIGR03190 benz_CoA_bzdN benzoy 88.5 0.97 2.5E-05 25.6 4.7 16 396-411 302-317 (377)
114 TIGR03023 WcaJ_sugtrans Undeca 88.4 2.2 5.7E-05 23.1 8.2 88 3-102 129-221 (451)
115 COG0800 Eda 2-keto-3-deoxy-6-p 88.3 2.3 5.7E-05 23.0 6.6 27 5-31 18-44 (211)
116 PRK13114 consensus 88.1 2.3 5.9E-05 22.9 6.9 174 12-207 27-216 (266)
117 PRK00208 thiG thiazole synthas 87.6 2.5 6.4E-05 22.7 6.9 74 118-205 115-189 (256)
118 TIGR01326 OAH_OAS_sulfhy O-ace 87.1 1.6 4.1E-05 24.1 5.1 63 17-79 113-180 (434)
119 pfam01820 Dala_Dala_lig_N D-al 87.0 0.45 1.1E-05 28.0 2.3 86 14-105 21-110 (110)
120 TIGR01435 glu_cys_lig_rel puta 86.8 0.74 1.9E-05 26.5 3.3 98 111-215 486-588 (754)
121 PRK03659 glutathione-regulated 86.8 2.2 5.6E-05 23.1 5.7 36 383-418 492-527 (602)
122 PRK07525 sulfoacetaldehyde ace 86.7 2.8 7.1E-05 22.4 8.9 31 166-198 130-160 (589)
123 cd01076 NAD_bind_1_Glu_DH NAD( 86.4 2.9 7.4E-05 22.3 7.5 67 3-86 32-98 (227)
124 KOG1447 consensus 85.8 3.1 7.8E-05 22.1 8.9 103 116-218 24-145 (412)
125 cd01974 Nitrogenase_MoFe_beta 85.8 3.1 7.9E-05 22.1 6.3 17 63-79 74-90 (435)
126 TIGR03234 OH-pyruv-isom hydrox 85.6 1.1 2.9E-05 25.2 3.7 21 256-276 222-242 (254)
127 cd04728 ThiG Thiazole synthase 85.4 3.2 8.2E-05 21.9 6.8 75 118-206 114-189 (248)
128 CHL00162 thiG thiamin biosynth 84.9 3.4 8.6E-05 21.8 6.9 72 119-204 129-201 (267)
129 PRK04165 acetyl-CoA decarbonyl 84.5 3.5 8.9E-05 21.7 7.6 29 129-157 180-208 (454)
130 pfam01081 Aldolase KDPG and KH 83.9 3.7 9.4E-05 21.5 6.7 109 5-152 13-123 (196)
131 PRK11840 bifunctional sulfur c 83.8 3.7 9.5E-05 21.5 7.3 20 59-78 93-112 (327)
132 PRK03562 glutathione-regulated 83.7 2.8 7.1E-05 22.4 5.0 18 384-401 492-509 (615)
133 PRK00509 argininosuccinate syn 83.6 3.8 9.7E-05 21.4 8.3 34 1-34 1-36 (398)
134 cd05145 RIO1_like RIO kinase f 83.3 3.9 1E-04 21.3 5.8 56 246-301 119-176 (190)
135 PRK09259 putative oxalyl-CoA d 82.8 4.1 0.0001 21.2 9.3 130 63-198 16-170 (572)
136 PRK13209 L-xylulose 5-phosphat 82.8 1.6 4E-05 24.2 3.5 18 61-78 21-38 (283)
137 cd01967 Nitrogenase_MoFe_alpha 82.4 4.2 0.00011 21.1 7.4 17 114-130 173-189 (406)
138 PRK08329 threonine synthase; V 82.4 4.2 0.00011 21.1 6.1 32 96-127 172-203 (348)
139 cd00452 KDPG_aldolase KDPG and 82.3 4.3 0.00011 21.1 7.4 101 5-145 9-113 (190)
140 TIGR01514 NAPRTase nicotinate 81.6 1.4 3.5E-05 24.5 2.8 89 328-416 256-365 (430)
141 COG1810 Uncharacterized protei 81.0 4.7 0.00012 20.8 5.8 124 2-155 1-139 (224)
142 PRK05638 threonine synthase; V 80.4 4.9 0.00013 20.6 8.5 31 97-127 182-212 (443)
143 PRK09496 trkA potassium transp 80.1 5 0.00013 20.5 6.8 69 4-79 2-70 (455)
144 PRK08904 consensus 79.7 5.2 0.00013 20.5 7.2 120 5-163 15-137 (207)
145 TIGR03025 EPS_sugtrans exopoly 79.6 5.2 0.00013 20.4 8.7 87 3-102 126-218 (445)
146 PRK09997 hydroxypyruvate isome 79.6 5.2 0.00013 20.4 7.9 23 255-277 222-244 (258)
147 PRK02645 ppnK inorganic polyph 79.5 5.2 0.00013 20.4 7.2 31 2-32 3-39 (304)
148 cd02006 TPP_Gcl Thiamine pyrop 79.5 3.1 7.9E-05 22.0 4.1 48 153-203 148-195 (202)
149 PRK07710 acetolactate synthase 79.1 5.4 0.00014 20.3 9.0 131 63-199 19-172 (571)
150 PRK06552 keto-hydroxyglutarate 79.0 5.4 0.00014 20.3 8.5 27 5-31 18-44 (209)
151 PRK13210 putative L-xylulose 5 79.0 4 0.0001 21.3 4.5 21 257-277 238-258 (284)
152 PRK08401 L-aspartate oxidase; 79.0 4.5 0.00011 20.9 4.8 35 2-36 1-35 (464)
153 PRK13820 argininosuccinate syn 78.9 5.4 0.00014 20.3 7.1 21 59-79 95-115 (395)
154 PRK00045 hemA glutamyl-tRNA re 78.9 5.5 0.00014 20.3 9.2 11 393-403 374-384 (429)
155 PRK13122 consensus 78.1 5.7 0.00015 20.1 7.6 173 12-206 13-200 (242)
156 COG2100 Predicted Fe-S oxidore 77.9 5.8 0.00015 20.1 8.4 96 90-203 205-300 (414)
157 TIGR02311 HpaI 2,4-dihydroxyhe 77.7 3.7 9.3E-05 21.5 4.0 73 8-82 93-171 (249)
158 pfam01326 PPDK_N Pyruvate phos 77.3 6 0.00015 20.0 5.8 45 242-288 257-301 (327)
159 pfam00148 Oxidored_nitro Nitro 76.9 6.2 0.00016 19.9 7.5 17 114-130 159-175 (398)
160 PRK07502 cyclohexadienyl dehyd 76.9 5.8 0.00015 20.1 4.8 34 1-34 5-40 (307)
161 pfam02571 CbiJ Precorrin-6x re 76.9 6.2 0.00016 19.9 7.6 121 4-150 2-127 (246)
162 PTZ00081 enolase (2-phospho-D- 76.6 6.3 0.00016 19.9 5.2 20 385-404 401-421 (442)
163 KOG2270 consensus 76.5 6.3 0.00016 19.8 5.8 50 248-297 268-319 (520)
164 PRK05718 keto-hydroxyglutarate 76.3 6.4 0.00016 19.8 7.2 121 5-163 20-142 (212)
165 pfam05368 NmrA NmrA-like famil 76.2 6.4 0.00016 19.8 12.7 92 5-105 1-100 (232)
166 PRK08104 consensus 76.1 6.5 0.00017 19.8 7.3 120 5-163 20-142 (212)
167 PRK07455 keto-hydroxyglutarate 76.0 6.5 0.00017 19.7 7.8 107 5-152 18-128 (210)
168 PRK00005 fmt methionyl-tRNA fo 75.8 4.6 0.00012 20.8 4.1 37 4-40 2-38 (309)
169 PRK07053 glutamine amidotransf 75.6 6.7 0.00017 19.7 5.6 89 1-108 1-92 (235)
170 pfam00208 ELFV_dehydrog Glutam 75.4 6.7 0.00017 19.6 7.7 57 3-76 33-89 (237)
171 COG1064 AdhP Zn-dependent alco 75.2 6.8 0.00017 19.6 10.2 46 4-49 169-215 (339)
172 PRK09989 hypothetical protein; 75.1 6.9 0.00017 19.6 7.1 22 256-277 223-244 (258)
173 TIGR03451 mycoS_dep_FDH mycoth 74.9 6.9 0.00018 19.6 9.6 11 348-358 269-279 (358)
174 COG1718 RIO1 Serine/threonine 74.8 4.9 0.00013 20.6 4.0 54 247-300 169-224 (268)
175 TIGR02776 NHEJ_ligase_prk DNA 74.6 6.4 0.00016 19.8 4.5 59 236-307 486-545 (645)
176 PRK05265 pyridoxine 5'-phospha 74.6 6.6 0.00017 19.7 4.6 104 15-135 27-155 (240)
177 TIGR03457 sulphoacet_xsc sulfo 74.3 7.2 0.00018 19.4 9.5 30 167-198 127-156 (579)
178 PRK05396 tdh L-threonine 3-deh 74.2 7.2 0.00018 19.4 10.3 14 346-359 254-267 (341)
179 cd00003 PNPsynthase Pyridoxine 74.2 7.2 0.00018 19.4 4.8 103 15-134 24-151 (234)
180 TIGR02643 T_phosphoryl thymidi 74.2 7.2 0.00018 19.4 5.1 99 74-181 125-247 (440)
181 TIGR03499 FlhF flagellar biosy 73.8 6.8 0.00017 19.6 4.5 37 385-421 229-267 (282)
182 TIGR02053 MerA mercuric reduct 73.5 3.9 9.9E-05 21.4 3.2 240 116-404 166-453 (494)
183 PRK08782 consensus 73.4 7.5 0.00019 19.3 8.5 120 5-163 22-144 (219)
184 pfam01488 Shikimate_DH Shikima 73.0 6.5 0.00016 19.8 4.2 30 3-32 13-42 (134)
185 PRK09260 3-hydroxybutyryl-CoA 72.9 7.7 0.0002 19.2 4.8 37 1-37 1-37 (289)
186 TIGR03127 RuMP_HxlB 6-phospho 72.0 7.9 0.0002 19.2 4.5 16 63-78 88-103 (179)
187 PRK11269 glyoxylate carboligas 71.7 6.1 0.00016 20.0 3.9 15 140-154 221-235 (591)
188 PRK05481 lipoyl synthase; Prov 71.3 3.9 9.9E-05 21.3 2.8 53 141-203 184-236 (289)
189 cd05119 RIO RIO kinase family, 71.2 8.4 0.00021 19.0 5.7 56 246-301 116-173 (187)
190 COG0445 GidA Flavin-dependent 71.0 8.5 0.00022 18.9 4.8 98 4-126 6-109 (621)
191 TIGR01702 CO_DH_cata carbon-mo 70.8 6.3 0.00016 19.9 3.8 17 61-77 113-129 (647)
192 COG1181 DdlA D-alanine-D-alani 70.4 0.34 8.8E-06 28.8 -2.8 131 59-218 19-154 (317)
193 TIGR03254 oxalate_oxc oxalyl-C 70.2 8.8 0.00022 18.8 8.6 32 166-198 129-160 (554)
194 TIGR01828 pyru_phos_dikin pyru 70.1 8.2 0.00021 19.1 4.2 204 43-290 107-361 (920)
195 COG0223 Fmt Methionyl-tRNA for 69.8 6.2 0.00016 19.9 3.6 39 2-40 1-39 (307)
196 TIGR01283 nifE nitrogenase MoF 69.8 9 0.00023 18.8 6.8 38 119-156 271-311 (470)
197 TIGR00692 tdh L-threonine 3-de 69.8 6 0.00015 20.0 3.5 29 3-31 163-191 (341)
198 PRK06015 keto-hydroxyglutarate 69.6 9.1 0.00023 18.7 8.6 107 5-152 20-130 (212)
199 PRK13111 trpA tryptophan synth 69.5 9.1 0.00023 18.7 8.1 217 12-264 23-254 (256)
200 pfam00899 ThiF ThiF family. Th 69.3 6.5 0.00017 19.7 3.6 117 3-134 2-123 (134)
201 PRK11302 DNA-binding transcrip 69.3 9.2 0.00023 18.7 5.4 10 18-27 52-61 (284)
202 cd05005 SIS_PHI Hexulose-6-pho 69.1 9.3 0.00024 18.7 4.4 12 173-184 89-100 (179)
203 TIGR03542 DAPAT_plant LL-diami 68.7 6.3 0.00016 19.8 3.4 13 391-403 390-402 (402)
204 pfam03599 CdhD CO dehydrogenas 68.6 9.5 0.00024 18.6 7.3 61 89-158 82-150 (384)
205 PRK06895 para-aminobenzoate sy 68.6 9.5 0.00024 18.6 5.8 32 1-32 1-33 (191)
206 TIGR01316 gltA glutamate synth 68.5 7 0.00018 19.5 3.6 184 3-222 143-358 (462)
207 PRK06801 hypothetical protein; 68.5 9.5 0.00024 18.6 11.7 75 61-159 29-107 (286)
208 TIGR01361 DAHP_synth_Bsub phos 68.3 6.4 0.00016 19.8 3.4 52 140-203 122-173 (262)
209 PRK09140 2-dehydro-3-deoxy-6-p 68.1 9.7 0.00025 18.5 9.4 107 6-152 16-126 (206)
210 PRK12928 lipoyl synthase; Prov 67.9 5.7 0.00015 20.2 3.0 13 170-182 216-228 (290)
211 PRK05703 flhF flagellar biosyn 67.9 9.8 0.00025 18.5 4.7 16 166-181 270-285 (412)
212 TIGR02015 BchY chlorophyllide 67.4 10 0.00026 18.4 4.6 65 326-401 336-406 (426)
213 PRK13361 molybdenum cofactor b 67.2 10 0.00026 18.4 8.8 126 15-185 51-182 (329)
214 pfam00070 Pyr_redox Pyridine n 67.2 9.9 0.00025 18.5 4.2 29 4-32 1-29 (82)
215 cd07039 TPP_PYR_POX Pyrimidine 67.0 10 0.00026 18.4 9.3 44 149-198 112-155 (164)
216 TIGR01124 ilvA_2Cterm threonin 66.8 7.2 0.00018 19.4 3.4 62 17-105 82-144 (508)
217 cd05565 PTS_IIB_lactose PTS_II 66.8 10 0.00026 18.3 6.7 77 58-146 13-97 (99)
218 PRK07979 acetolactate synthase 66.3 8.8 0.00022 18.8 3.7 30 168-198 131-160 (574)
219 TIGR03470 HpnH hopanoid biosyn 66.2 11 0.00027 18.3 9.3 99 60-183 86-188 (318)
220 TIGR02720 pyruv_oxi_spxB pyruv 66.0 11 0.00027 18.2 5.0 88 63-156 138-232 (577)
221 pfam02254 TrkA_N TrkA-N domain 65.7 11 0.00027 18.2 6.1 67 5-80 1-67 (115)
222 PRK10669 putative cation:proto 65.6 11 0.00028 18.2 9.4 13 384-396 510-522 (558)
223 PRK05878 pyruvate phosphate di 65.6 11 0.00028 18.2 4.5 37 247-285 256-292 (529)
224 cd05014 SIS_Kpsf KpsF-like pro 65.3 11 0.00028 18.2 4.4 72 4-79 2-79 (128)
225 COG1488 PncB Nicotinic acid ph 65.3 1.9 4.9E-05 23.5 0.2 58 359-416 264-327 (405)
226 cd02010 TPP_ALS Thiamine pyrop 64.7 9.8 0.00025 18.5 3.7 47 151-204 126-172 (177)
227 TIGR00693 thiE thiamine-phosph 64.7 11 0.00029 18.1 5.6 84 67-154 75-170 (210)
228 PRK07226 fructose-bisphosphate 64.7 4.1 0.0001 21.2 1.8 38 46-86 27-64 (266)
229 pfam06973 DUF1297 Domain of un 64.6 11 0.00029 18.1 5.3 50 241-291 87-143 (188)
230 COG5564 Predicted TIM-barrel e 64.5 11 0.00029 18.1 6.8 118 58-191 98-219 (276)
231 PRK07418 acetolactate synthase 64.5 9.8 0.00025 18.5 3.7 31 167-198 148-178 (615)
232 COG2022 ThiG Uncharacterized e 64.4 11 0.00029 18.0 8.4 18 60-77 26-43 (262)
233 smart00090 RIO RIO-like kinase 64.2 11 0.00029 18.0 5.5 55 247-301 151-207 (237)
234 PRK03202 6-phosphofructokinase 64.0 12 0.00029 18.0 7.4 36 1-36 1-43 (323)
235 COG0647 NagD Predicted sugar p 63.9 12 0.0003 18.0 6.4 67 79-148 20-87 (269)
236 PRK05568 flavodoxin; Provision 63.7 12 0.0003 18.0 8.6 102 2-105 1-116 (142)
237 COG0794 GutQ Predicted sugar p 63.7 12 0.0003 17.9 4.8 18 14-31 54-71 (202)
238 PRK03369 murD UDP-N-acetylmura 63.7 12 0.0003 17.9 7.4 87 3-104 13-99 (487)
239 PRK05370 argininosuccinate syn 63.6 12 0.0003 17.9 6.4 30 3-32 12-42 (447)
240 cd01018 ZntC Metal binding pro 63.6 9.5 0.00024 18.6 3.5 32 51-84 30-62 (266)
241 pfam02776 TPP_enzyme_N Thiamin 63.6 12 0.0003 17.9 9.4 35 163-198 124-158 (172)
242 TIGR01116 ATPase-IIA1_Ca calci 63.4 12 0.0003 17.9 4.3 33 257-289 496-531 (800)
243 PHA02117 glutathionylspermidin 63.3 12 0.0003 17.9 5.4 15 356-370 368-382 (395)
244 TIGR00715 precor6x_red precorr 63.2 12 0.0003 17.9 6.0 90 4-104 2-99 (260)
245 PRK07114 keto-hydroxyglutarate 63.2 12 0.0003 17.9 10.4 114 5-152 21-135 (223)
246 PRK06048 acetolactate synthase 63.1 12 0.00031 17.9 9.0 34 164-198 130-163 (562)
247 pfam00743 FMO-like Flavin-bind 62.8 12 0.00031 17.8 4.0 32 3-34 2-33 (532)
248 cd01981 Pchlide_reductase_B Pc 62.5 12 0.00031 17.8 8.3 31 100-130 165-195 (430)
249 PRK06882 acetolactate synthase 62.4 11 0.00028 18.1 3.7 34 164-198 127-160 (574)
250 COG0673 MviM Predicted dehydro 62.3 12 0.00031 17.8 6.6 141 1-160 2-156 (342)
251 cd01065 NAD_bind_Shikimate_DH 61.7 13 0.00032 17.7 4.0 35 3-37 20-55 (155)
252 COG1671 Uncharacterized protei 61.5 13 0.00032 17.7 11.1 131 3-148 2-138 (150)
253 PRK06857 consensus 61.3 13 0.00033 17.7 8.6 118 5-163 17-139 (209)
254 cd05146 RIO3_euk RIO kinase fa 61.3 13 0.00033 17.7 6.0 53 248-300 128-182 (197)
255 TIGR01628 PABP-1234 polyadenyl 61.2 6.9 0.00018 19.6 2.4 109 81-204 43-168 (860)
256 TIGR03201 dearomat_had 6-hydro 61.1 13 0.00033 17.6 10.3 13 346-358 263-275 (349)
257 PRK11572 copper homeostasis pr 61.1 13 0.00033 17.6 4.0 72 62-184 10-81 (248)
258 TIGR01323 nitrile_alph nitrile 61.0 11 0.00028 18.2 3.4 126 220-377 25-155 (186)
259 PRK06995 flhF flagellar biosyn 60.9 13 0.00033 17.6 5.3 70 101-183 180-253 (404)
260 PRK09856 fructoselysine 3-epim 60.9 11 0.00028 18.2 3.4 19 257-275 231-249 (276)
261 cd06811 PLPDE_III_yhfX_like Ty 60.9 13 0.00033 17.6 3.8 57 62-130 41-99 (382)
262 TIGR01885 Orn_aminotrans ornit 60.7 13 0.00033 17.6 6.3 100 2-104 101-242 (426)
263 PRK07590 L,L-diaminopimelate a 60.6 13 0.00034 17.6 4.6 17 169-185 192-208 (409)
264 TIGR00789 flhB_rel FlhB domain 60.3 9 0.00023 18.7 2.9 57 4-70 19-77 (84)
265 PRK05192 tRNA uridine 5-carbox 60.3 13 0.00034 17.5 4.8 97 5-126 9-111 (621)
266 COG4948 L-alanine-DL-glutamate 59.6 14 0.00035 17.5 8.0 12 353-364 345-356 (372)
267 pfam05185 PRMT5 PRMT5 arginine 59.6 14 0.00035 17.5 4.4 23 274-296 327-351 (447)
268 PRK07092 benzoylformate decarb 59.4 11 0.00028 18.2 3.2 20 15-34 7-26 (521)
269 PRK05301 pyrroloquinoline quin 59.2 14 0.00036 17.4 11.6 118 13-152 51-185 (375)
270 PRK08125 bifunctional UDP-gluc 59.2 14 0.00036 17.4 3.8 77 4-83 2-85 (660)
271 TIGR00874 talAB transaldolase; 58.9 12 0.00031 17.9 3.3 60 57-134 29-94 (324)
272 PRK04527 argininosuccinate syn 58.9 14 0.00036 17.4 8.8 32 3-34 4-36 (397)
273 PRK05321 nicotinate phosphorib 58.8 1.8 4.5E-05 23.8 -1.0 56 360-415 277-341 (400)
274 PRK12724 flagellar biosynthesi 58.6 14 0.00036 17.3 4.7 16 63-78 12-27 (432)
275 pfam01163 RIO1 RIO1 family. Th 58.1 15 0.00037 17.3 4.7 55 247-301 106-162 (186)
276 TIGR02049 gshA_ferroox glutama 58.0 4.8 0.00012 20.7 1.2 171 16-203 99-319 (436)
277 PRK13117 consensus 57.7 15 0.00037 17.2 8.1 218 12-264 31-266 (268)
278 PRK12723 flagellar biosynthesi 57.7 15 0.00038 17.2 4.6 30 139-181 222-251 (388)
279 TIGR00694 thiM hydroxyethylthi 57.5 15 0.00038 17.2 7.7 108 117-245 69-202 (282)
280 pfam02548 Pantoate_transf Keto 57.2 15 0.00038 17.2 6.2 95 120-217 101-206 (261)
281 pfam00113 Enolase_C Enolase, C 57.2 15 0.00038 17.2 5.9 11 257-267 220-230 (296)
282 cd01483 E1_enzyme_family Super 57.0 15 0.00038 17.2 5.7 37 4-41 1-37 (143)
283 cd05147 RIO1_euk RIO kinase fa 56.8 15 0.00039 17.1 5.9 53 249-301 122-176 (190)
284 cd07085 ALDH_F6_MMSDH Methylma 56.6 13 0.00033 17.6 3.2 220 67-320 157-407 (478)
285 pfam08886 GshA Glutamate-cyste 56.6 3.4 8.8E-05 21.7 0.2 30 153-182 263-292 (404)
286 PRK13112 consensus 56.6 15 0.00039 17.1 8.1 219 14-265 34-271 (279)
287 PRK06965 acetolactate synthase 56.3 15 0.00039 17.1 3.7 132 61-198 22-177 (587)
288 COG3494 Uncharacterized protei 56.2 16 0.0004 17.1 7.2 63 5-78 8-72 (279)
289 TIGR00853 pts-lac PTS system, 56.2 16 0.0004 17.1 5.7 72 48-131 49-122 (142)
290 PRK08057 cobalt-precorrin-6x r 55.8 16 0.0004 17.0 7.7 88 2-103 1-93 (241)
291 cd00316 Oxidoreductase_nitroge 55.5 16 0.00041 17.0 8.7 16 115-130 167-182 (399)
292 PRK11081 tRNA guanosine-2'-O-m 55.4 16 0.00041 17.0 5.9 35 43-80 16-50 (229)
293 PRK08611 pyruvate oxidase; Pro 55.1 16 0.00041 17.0 9.9 44 149-198 117-160 (576)
294 pfam04842 DUF639 Plant protein 55.0 9.7 0.00025 18.5 2.3 31 393-423 467-497 (682)
295 PRK13398 3-deoxy-7-phosphohept 54.9 16 0.00041 16.9 5.9 48 140-201 124-172 (266)
296 pfam04227 Indigoidine_A Indigo 54.9 9.1 0.00023 18.7 2.2 184 63-277 34-261 (293)
297 pfam02593 DUF166 Uncharacteriz 54.9 16 0.00041 16.9 7.5 35 7-41 2-36 (215)
298 PRK07789 acetolactate synthase 54.7 16 0.00042 16.9 3.6 131 62-198 33-187 (612)
299 PRK08175 aminotransferase; Val 54.7 16 0.00042 16.9 4.0 14 392-405 376-389 (395)
300 pfam11394 DUF2875 Protein of u 54.5 6.5 0.00017 19.7 1.4 24 115-138 99-122 (451)
301 PRK07328 histidinol-phosphatas 54.4 17 0.00042 16.9 4.7 17 62-78 18-34 (268)
302 cd01545 PBP1_SalR Ligand-bindi 54.2 17 0.00042 16.9 6.7 23 11-33 15-37 (270)
303 PRK07695 transcriptional regul 54.1 17 0.00043 16.8 5.7 17 66-82 65-81 (202)
304 PRK00164 moaA molybdenum cofac 54.0 17 0.00043 16.8 8.7 130 14-185 56-188 (334)
305 PRK02910 light-independent pro 53.9 17 0.00043 16.8 4.7 31 100-130 161-191 (524)
306 PRK13136 consensus 53.7 17 0.00043 16.8 7.4 172 12-205 26-211 (253)
307 TIGR00838 argH argininosuccina 53.7 9.4 0.00024 18.6 2.1 100 64-180 136-239 (469)
308 TIGR01980 sufB FeS assembly pr 53.5 17 0.00042 16.9 3.3 38 151-203 158-196 (469)
309 cd07038 TPP_PYR_PDC_IPDC_like 53.4 17 0.00044 16.8 8.9 39 154-198 121-159 (162)
310 PRK12831 putative oxidoreducta 53.2 17 0.00044 16.7 4.4 28 3-30 141-168 (464)
311 PRK02615 thiamine-phosphate py 53.2 17 0.00044 16.7 4.6 45 219-272 218-267 (345)
312 TIGR01804 BADH betaine aldehyd 53.1 7.4 0.00019 19.3 1.5 158 158-341 244-433 (471)
313 TIGR02668 moaA_archaeal probab 53.1 17 0.00044 16.7 5.8 127 15-184 52-184 (324)
314 cd02004 TPP_BZL_OCoD_HPCL Thia 53.0 17 0.00044 16.7 3.7 41 154-201 131-171 (172)
315 cd01570 NAPRTase_A Nicotinate 53.0 4.3 0.00011 21.0 0.3 57 360-416 251-312 (327)
316 cd01137 PsaA Metal binding pro 52.9 17 0.00045 16.7 4.1 33 50-84 44-77 (287)
317 cd01966 Nitrogenase_NifN_1 Nit 52.5 18 0.00045 16.7 7.1 25 63-87 70-94 (417)
318 cd02002 TPP_BFDC Thiamine pyro 52.3 16 0.00042 16.9 3.1 40 153-199 137-176 (178)
319 cd06556 ICL_KPHMT Members of t 52.2 18 0.00046 16.6 4.4 45 170-217 150-200 (240)
320 PRK06725 acetolactate synthase 52.1 18 0.00046 16.6 9.3 128 63-198 18-170 (570)
321 PRK11749 putative oxidoreducta 52.0 18 0.00046 16.6 3.9 29 3-31 141-169 (460)
322 PRK13113 consensus 51.7 18 0.00046 16.6 8.0 173 13-207 32-220 (263)
323 cd01567 NAPRTase_PncB Nicotina 51.6 5.3 0.00014 20.4 0.6 57 359-415 264-329 (343)
324 TIGR03013 EpsB_2 sugar transfe 51.5 18 0.00047 16.6 6.5 29 306-334 278-306 (442)
325 pfam03575 Peptidase_S51 Peptid 51.5 18 0.00047 16.6 5.6 77 16-113 4-83 (154)
326 CHL00099 ilvB acetohydroxyacid 51.2 19 0.00047 16.5 3.6 31 167-198 138-168 (588)
327 PRK09414 glutamate dehydrogena 51.0 19 0.00048 16.5 10.6 14 153-166 191-204 (446)
328 COG0685 MetF 5,10-methylenetet 50.9 19 0.00048 16.5 10.2 122 9-149 88-226 (291)
329 COG1387 HIS2 Histidinol phosph 50.6 19 0.00048 16.5 5.7 20 59-78 14-33 (237)
330 KOG2518 consensus 50.5 19 0.00048 16.5 5.5 34 11-44 127-160 (556)
331 pfam06189 5-nucleotidase 5'-nu 50.4 14 0.00035 17.5 2.5 12 12-23 47-58 (263)
332 cd06839 PLPDE_III_Btrk_like Ty 50.0 19 0.00049 16.4 5.7 13 63-75 43-55 (382)
333 CHL00176 ftsH cell division pr 50.0 19 0.00049 16.4 3.7 15 63-77 96-110 (631)
334 COG2873 MET17 O-acetylhomoseri 49.9 19 0.00049 16.4 4.6 12 23-34 5-16 (426)
335 TIGR00737 nifR3_yhdG putative 49.7 19 0.0005 16.4 5.9 92 60-157 121-250 (336)
336 cd00308 enolase_like Enolase-s 49.2 20 0.00051 16.3 4.4 52 89-145 111-163 (229)
337 TIGR02386 rpoC_TIGR DNA-direct 49.1 19 0.00048 16.5 3.0 100 195-318 943-1054(1552)
338 TIGR03385 CoA_CoA_reduc CoA-di 48.9 20 0.00051 16.3 4.3 10 90-99 151-160 (427)
339 COG4091 Predicted homoserine d 48.9 4.5 0.00011 20.9 -0.2 89 118-220 143-238 (438)
340 COG1042 Acyl-CoA synthetase (N 48.7 20 0.00051 16.3 3.8 15 11-25 23-37 (598)
341 cd06810 PLPDE_III_ODC_DapDC_li 48.7 20 0.00051 16.3 6.2 13 63-75 37-49 (368)
342 PRK06953 short chain dehydroge 48.6 20 0.00052 16.3 6.1 36 2-38 1-38 (222)
343 cd05710 SIS_1 A subgroup of th 48.5 20 0.00052 16.2 4.2 16 63-78 63-78 (120)
344 TIGR02025 BchH magnesium chela 48.5 8.2 0.00021 19.1 1.1 18 16-33 287-304 (1384)
345 TIGR02313 HpaI-NOT-DapA 2,4-di 48.4 20 0.00052 16.2 4.2 199 99-326 37-283 (294)
346 PRK13134 consensus 48.4 20 0.00052 16.2 7.7 104 89-207 113-221 (257)
347 TIGR03581 EF_0839 conserved hy 48.3 20 0.00052 16.2 5.0 145 8-160 11-185 (236)
348 PRK05282 peptidase E; Validate 48.2 21 0.00052 16.2 7.0 73 16-110 52-124 (233)
349 PRK13120 consensus 48.1 21 0.00052 16.2 7.6 221 12-265 35-276 (285)
350 cd07035 TPP_PYR_POX_like Pyrim 48.0 21 0.00053 16.2 8.0 34 164-198 119-152 (155)
351 pfam00290 Trp_syntA Tryptophan 48.0 21 0.00053 16.2 7.1 174 12-207 23-212 (258)
352 PRK10637 cysG siroheme synthas 47.7 21 0.00053 16.2 7.2 32 3-34 13-44 (457)
353 PRK05647 purN phosphoribosylgl 47.7 20 0.0005 16.3 2.9 77 2-82 1-89 (200)
354 PRK08978 acetolactate synthase 47.6 21 0.00053 16.2 9.8 32 166-198 125-156 (548)
355 PRK11557 putative DNA-binding 47.6 21 0.00053 16.2 4.3 12 17-28 51-62 (282)
356 PRK07102 short chain dehydroge 47.5 21 0.00053 16.1 4.4 36 2-38 1-38 (243)
357 PRK09484 3-deoxy-D-manno-octul 47.4 21 0.00054 16.1 7.8 71 64-146 79-151 (186)
358 PRK06719 precorrin-2 dehydroge 47.2 21 0.00054 16.1 4.7 29 3-31 14-42 (157)
359 PRK02769 histidine decarboxyla 47.1 14 0.00035 17.4 2.1 51 127-180 136-187 (380)
360 TIGR02483 PFK_mixed phosphofru 47.0 21 0.00054 16.1 3.0 91 17-112 22-142 (339)
361 PRK07313 phosphopantothenoylcy 46.9 21 0.00055 16.1 4.5 36 1-36 1-40 (180)
362 PRK13123 consensus 46.7 22 0.00055 16.1 7.7 171 14-208 31-216 (256)
363 TIGR00033 aroC chorismate synt 46.6 13 0.00034 17.6 1.9 64 227-291 190-262 (391)
364 PRK13125 trpA tryptophan synth 46.5 22 0.00055 16.0 5.0 175 12-207 19-203 (247)
365 PRK06847 hypothetical protein; 46.4 22 0.00056 16.0 4.2 33 2-34 4-36 (375)
366 PRK12778 putative bifunctional 46.4 22 0.00056 16.0 4.4 74 3-79 99-184 (760)
367 PRK12814 putative NADPH-depend 46.4 22 0.00056 16.0 3.2 93 3-105 194-286 (652)
368 cd01489 Uba2_SUMO Ubiquitin ac 46.2 22 0.00056 16.0 3.4 117 4-134 1-122 (312)
369 PRK13143 hisH imidazole glycer 46.2 22 0.00056 16.0 5.9 46 2-53 1-47 (201)
370 TIGR02518 EutH_ACDH acetaldehy 45.5 22 0.00055 16.0 2.9 102 99-202 133-260 (528)
371 PRK09148 aminotransferase; Val 45.3 23 0.00058 15.9 4.3 15 391-405 377-391 (406)
372 PRK11636 mrcA peptidoglycan sy 45.2 20 0.00052 16.2 2.7 81 120-220 519-603 (850)
373 PRK07064 hypothetical protein; 45.1 23 0.00058 15.9 3.3 32 166-198 131-162 (544)
374 COG0205 PfkA 6-phosphofructoki 44.8 23 0.00059 15.9 5.7 100 1-104 1-123 (347)
375 cd02811 IDI-2_FMN Isopentenyl- 44.7 23 0.00059 15.8 6.2 15 88-102 71-85 (326)
376 PRK08286 cbiC precorrin-8X met 44.6 11 0.00027 18.2 1.2 93 59-164 101-198 (213)
377 COG0754 Gsp Glutathionylspermi 44.5 14 0.00037 17.3 1.8 25 347-371 351-375 (387)
378 PRK10310 galactitol-specific P 44.4 23 0.00059 15.8 4.6 50 1-50 1-56 (94)
379 TIGR02194 GlrX_NrdH Glutaredox 44.3 12 0.00031 17.9 1.4 39 118-157 14-55 (72)
380 PRK05858 hypothetical protein; 44.2 23 0.0006 15.8 9.3 34 165-199 130-163 (543)
381 TIGR00021 rpiA ribose 5-phosph 44.2 9.5 0.00024 18.6 0.9 57 91-156 34-95 (236)
382 PRK01390 murD UDP-N-acetylmura 44.2 23 0.00058 15.9 2.8 33 3-35 10-42 (457)
383 PRK09191 two-component respons 44.1 24 0.0006 15.8 8.4 16 171-186 117-132 (261)
384 COG0320 LipA Lipoate synthase 44.1 24 0.0006 15.8 4.1 16 63-78 38-53 (306)
385 COG3248 Tsx Nucleoside-binding 44.1 9.2 0.00023 18.7 0.8 22 280-306 97-118 (284)
386 PRK05868 hypothetical protein; 44.0 24 0.0006 15.8 4.3 30 2-31 1-30 (372)
387 cd00568 TPP_enzymes Thiamine p 43.9 24 0.00061 15.8 3.3 43 149-198 123-165 (168)
388 cd07047 BMC_PduB_repeat1 1,2-p 43.7 24 0.00061 15.8 3.0 66 139-213 52-124 (134)
389 pfam03932 CutC CutC family. Co 43.3 24 0.00062 15.7 5.3 73 62-185 9-81 (202)
390 PRK09860 putative alcohol dehy 43.2 24 0.00062 15.7 6.3 75 5-80 11-94 (383)
391 PRK13138 consensus 43.0 24 0.00062 15.7 8.3 220 12-264 27-263 (264)
392 cd04950 GT1_like_1 Glycosyltra 43.0 24 0.00062 15.7 7.6 21 385-405 320-340 (373)
393 TIGR01027 proB glutamate 5-kin 42.9 25 0.00063 15.7 3.3 222 14-269 117-368 (379)
394 cd01401 PncB_like Nicotinate p 42.9 4.1 0.0001 21.2 -1.1 56 360-415 275-339 (377)
395 PRK13940 glutamyl-tRNA reducta 42.8 25 0.00063 15.7 4.1 18 388-405 362-379 (414)
396 PRK09124 pyruvate dehydrogenas 42.8 25 0.00063 15.7 7.0 33 164-198 126-158 (574)
397 COG0352 ThiE Thiamine monophos 42.8 25 0.00063 15.7 3.0 77 4-83 8-90 (211)
398 cd01484 E1-2_like Ubiquitin ac 42.5 25 0.00063 15.6 3.6 36 4-40 1-36 (234)
399 PRK08942 D,D-heptose 1,7-bisph 42.3 25 0.00064 15.6 3.7 20 14-34 34-53 (181)
400 cd00945 Aldolase_Class_I Class 42.2 25 0.00064 15.6 8.8 144 15-160 16-180 (201)
401 PRK00124 hypothetical protein; 42.2 25 0.00064 15.6 11.1 129 4-148 2-137 (149)
402 PRK08617 acetolactate synthase 42.1 25 0.00064 15.6 9.5 34 164-198 127-160 (552)
403 cd06334 PBP1_ABC_ligand_bindin 42.0 25 0.00064 15.6 7.9 40 66-107 59-98 (351)
404 TIGR02024 FtcD glutamate formi 42.0 25 0.00065 15.6 3.5 150 12-187 18-210 (331)
405 PRK13135 consensus 41.8 25 0.00065 15.5 8.3 214 13-265 32-263 (267)
406 TIGR00624 tag DNA-3-methyladen 41.8 11 0.00027 18.3 0.8 66 96-188 43-108 (185)
407 PRK05920 aromatic acid decarbo 41.8 25 0.00065 15.5 4.1 38 1-38 3-44 (205)
408 PRK06466 acetolactate synthase 41.4 26 0.00066 15.5 3.7 31 167-198 130-160 (574)
409 PRK09238 bifunctional aconitat 41.4 26 0.00065 15.5 2.7 56 6-82 336-391 (841)
410 COG0214 SNZ1 Pyridoxine biosyn 41.4 21 0.00054 16.1 2.3 15 142-156 69-83 (296)
411 COG2308 Uncharacterized conser 41.4 26 0.00066 15.5 8.5 29 332-360 430-459 (488)
412 PTZ00124 adenosine deaminase; 41.3 26 0.00066 15.5 6.7 16 61-76 48-63 (362)
413 pfam02826 2-Hacid_dh_C D-isome 41.1 26 0.00066 15.5 4.1 29 3-31 37-65 (176)
414 PRK08609 hypothetical protein; 41.1 26 0.00067 15.5 6.0 49 365-413 416-467 (570)
415 PRK09246 amidophosphoribosyltr 41.0 26 0.00067 15.5 5.1 14 429-442 461-474 (503)
416 PRK13118 consensus 41.0 26 0.00067 15.5 9.0 216 12-265 31-265 (269)
417 COG1964 Predicted Fe-S oxidore 40.9 16 0.0004 17.0 1.6 84 87-181 75-163 (475)
418 pfam04321 RmlD_sub_bind RmlD s 40.8 26 0.00067 15.5 8.0 84 5-110 1-102 (284)
419 COG2089 SpsE Sialic acid synth 40.8 26 0.00067 15.4 8.3 152 11-202 29-184 (347)
420 pfam04748 Polysacc_deac_2 Dive 40.7 26 0.00067 15.4 7.9 110 14-136 34-150 (213)
421 PRK05569 flavodoxin; Provision 40.7 26 0.00067 15.4 10.3 101 2-104 1-116 (141)
422 TIGR00118 acolac_lg acetolacta 40.6 26 0.00068 15.4 3.8 334 16-422 6-372 (593)
423 PRK09196 fructose-1,6-bisphosp 40.6 27 0.00068 15.4 6.7 74 61-158 29-107 (347)
424 TIGR02463 MPGP_rel mannosyl-3- 40.4 18 0.00047 16.6 1.9 32 13-44 20-51 (224)
425 cd01490 Ube1_repeat2 Ubiquitin 40.4 27 0.00068 15.4 2.9 34 4-38 1-39 (435)
426 TIGR00421 ubiX_pad polyprenyl 40.4 27 0.00068 15.4 3.1 29 10-38 10-39 (181)
427 pfam04309 G3P_antiterm Glycero 40.4 27 0.00068 15.4 7.0 13 168-180 147-159 (174)
428 PRK06740 histidinol-phosphatas 40.3 27 0.00068 15.4 6.7 26 140-165 156-181 (338)
429 COG0465 HflB ATP-dependent Zn 40.3 27 0.00068 15.4 5.3 31 95-130 181-211 (596)
430 cd05008 SIS_GlmS_GlmD_1 SIS (S 40.3 27 0.00068 15.4 4.4 73 4-78 1-77 (126)
431 COG4109 Predicted transcriptio 40.3 24 0.0006 15.8 2.4 48 110-157 117-164 (432)
432 pfam01380 SIS SIS domain. SIS 40.2 27 0.00068 15.4 4.9 74 2-78 5-84 (131)
433 PRK06546 pyruvate dehydrogenas 40.2 27 0.00068 15.4 7.0 33 164-198 126-158 (578)
434 PRK06264 cbiC precorrin-8X met 40.2 13 0.00033 17.6 1.1 140 12-165 40-194 (210)
435 TIGR01011 rpsB_bact ribosomal 40.2 20 0.00051 16.3 2.0 38 87-130 51-91 (227)
436 cd01985 ETF The electron trans 40.2 27 0.00069 15.4 5.6 50 99-162 93-142 (181)
437 PRK13133 consensus 40.1 27 0.00069 15.4 8.5 177 12-208 29-227 (267)
438 COG0656 ARA1 Aldo/keto reducta 40.0 27 0.00069 15.4 5.5 149 9-164 25-197 (280)
439 TIGR00970 leuA_yeast 2-isoprop 39.9 17 0.00044 16.7 1.7 125 14-149 54-198 (615)
440 cd02014 TPP_POX Thiamine pyrop 39.8 27 0.00069 15.3 3.7 46 150-202 128-173 (178)
441 PRK10676 DNA-binding transcrip 39.8 27 0.00069 15.3 4.0 80 97-185 11-95 (262)
442 TIGR03586 PseI pseudaminic aci 39.8 27 0.00069 15.3 4.6 140 12-184 17-158 (327)
443 TIGR00289 TIGR00289 conserved 39.7 19 0.00049 16.4 1.9 62 114-178 102-171 (227)
444 PRK08322 acetolactate synthase 39.4 28 0.0007 15.3 9.2 31 167-198 126-156 (547)
445 PRK08636 aspartate aminotransf 39.3 28 0.00071 15.3 3.9 22 386-407 378-402 (403)
446 pfam06050 HGD-D 2-hydroxygluta 39.3 28 0.00071 15.3 5.9 15 254-268 272-286 (345)
447 COG0569 TrkA K+ transport syst 39.3 28 0.00071 15.3 7.8 70 3-80 1-72 (225)
448 PRK07945 hypothetical protein; 39.3 28 0.00071 15.3 6.3 73 132-216 105-180 (335)
449 PRK09107 acetolactate synthase 39.2 28 0.00071 15.3 3.7 33 165-198 135-167 (594)
450 PRK06855 aminotransferase; Val 39.2 28 0.00071 15.3 3.9 17 169-185 187-203 (433)
451 PRK00077 eno phosphopyruvate h 39.1 23 0.00057 15.9 2.2 17 388-404 390-406 (427)
452 cd01488 Uba3_RUB Ubiquitin act 39.1 28 0.00071 15.3 3.4 36 4-40 1-36 (291)
453 PRK05575 cbiC precorrin-8X met 39.1 13 0.00033 17.6 0.9 92 59-163 96-191 (204)
454 PRK00143 trmU tRNA (5-methylam 39.1 7 0.00018 19.5 -0.5 40 137-181 171-210 (355)
455 pfam02563 Poly_export Polysacc 39.1 28 0.00071 15.3 5.9 60 341-407 9-72 (83)
456 TIGR03549 conserved hypothetic 39.0 26 0.00065 15.5 2.4 46 241-291 360-413 (718)
457 PRK00881 purH bifunctional pho 39.0 28 0.00071 15.3 6.6 142 1-182 3-159 (514)
458 PRK06718 precorrin-2 dehydroge 39.0 28 0.00071 15.3 4.5 29 3-31 11-39 (202)
459 cd05211 NAD_bind_Glu_Leu_Phe_V 38.9 28 0.00072 15.2 9.2 104 3-131 24-132 (217)
460 PRK09754 phenylpropionate diox 38.9 28 0.00072 15.2 4.3 33 3-35 4-37 (400)
461 cd04724 Tryptophan_synthase_al 38.8 28 0.00072 15.2 8.1 172 12-207 14-202 (242)
462 PRK09492 treR trehalose repres 38.8 12 0.0003 18.0 0.7 62 12-79 34-97 (315)
463 TIGR02881 spore_V_K stage V sp 38.8 17 0.00044 16.7 1.5 46 43-91 109-165 (261)
464 PRK06327 dihydrolipoamide dehy 38.8 28 0.00072 15.2 4.0 33 1-33 1-35 (475)
465 COG3384 Aromatic ring-opening 38.7 18 0.00045 16.7 1.6 20 15-34 33-52 (268)
466 cd02032 Bchl_like This family 38.7 28 0.00072 15.2 6.3 37 4-40 2-43 (267)
467 CHL00067 rps2 ribosomal protei 38.5 28 0.00072 15.2 3.3 37 89-131 54-92 (227)
468 PRK07709 fructose-bisphosphate 38.5 28 0.00073 15.2 12.3 19 61-79 29-47 (285)
469 CHL00175 minD septum-site dete 38.4 29 0.00073 15.2 6.7 23 12-34 29-51 (279)
470 PRK08010 pyridine nucleotide-d 38.0 29 0.00074 15.2 5.2 29 4-32 5-33 (441)
471 TIGR00274 TIGR00274 glucokinas 37.9 29 0.00074 15.1 3.3 41 9-51 137-177 (291)
472 PRK00311 panB 3-methyl-2-oxobu 37.8 29 0.00074 15.1 6.2 16 170-185 157-172 (266)
473 PRK06361 hypothetical protein; 37.7 29 0.00075 15.1 5.1 16 16-31 19-34 (216)
474 cd05803 PGM_like4 This PGM-lik 37.6 29 0.00075 15.1 7.2 43 358-401 401-443 (445)
475 pfam07071 DUF1341 Protein of u 37.4 30 0.00075 15.1 5.1 159 8-183 11-199 (218)
476 PRK05939 hypothetical protein; 37.4 30 0.00075 15.1 5.5 20 385-404 375-394 (396)
477 cd02922 FCB2_FMN Flavocytochro 37.3 30 0.00076 15.1 3.6 68 6-78 77-148 (344)
478 TIGR00032 argG argininosuccina 37.3 30 0.00076 15.1 7.0 97 61-158 100-208 (420)
479 PRK13479 2-aminoethylphosphona 37.2 30 0.00076 15.1 6.4 59 118-179 94-157 (368)
480 cd02003 TPP_IolD Thiamine pyro 37.2 30 0.00076 15.1 3.7 43 154-203 143-185 (205)
481 pfam00551 Formyl_trans_N Formy 37.1 30 0.00076 15.1 6.9 80 4-84 4-90 (181)
482 COG4251 Bacteriophytochrome (l 37.0 16 0.0004 17.1 1.1 54 144-204 124-177 (750)
483 TIGR00750 lao LAO/AO transport 37.0 30 0.00076 15.0 3.6 101 79-212 46-155 (333)
484 PRK08199 acetolactate synthase 36.7 30 0.00077 15.0 9.0 130 64-198 6-158 (553)
485 pfam07992 Pyr_redox_2 Pyridine 36.5 31 0.00078 15.0 4.1 33 3-35 137-169 (277)
486 PRK12457 2-dehydro-3-deoxyphos 36.5 31 0.00078 15.0 7.0 107 63-197 36-163 (281)
487 PRK13127 consensus 36.5 31 0.00078 15.0 7.6 81 63-147 104-218 (262)
488 PRK13115 consensus 36.4 31 0.00078 15.0 8.2 85 63-147 116-230 (269)
489 PRK04690 murD UDP-N-acetylmura 36.4 31 0.00078 15.0 7.5 87 3-104 9-98 (468)
490 PRK05976 dihydrolipoamide dehy 36.3 31 0.00078 15.0 4.2 33 3-35 176-208 (464)
491 PRK13116 consensus 36.3 31 0.00078 15.0 7.8 87 59-149 101-228 (278)
492 cd02202 FtsZ_type2 FtsZ is a G 36.2 31 0.00078 15.0 8.6 98 4-104 2-133 (349)
493 PRK06116 glutathione reductase 36.2 31 0.00079 15.0 4.2 33 3-35 168-200 (450)
494 cd02005 TPP_PDC_IPDC Thiamine 35.9 31 0.00079 14.9 3.9 43 151-198 128-170 (183)
495 pfam02775 TPP_enzyme_C Thiamin 35.9 31 0.00079 14.9 3.3 44 148-198 106-149 (150)
496 PRK05942 aspartate aminotransf 35.9 31 0.00079 14.9 3.6 71 91-184 309-388 (394)
497 cd03796 GT1_PIG-A_like This fa 35.7 31 0.0008 14.9 8.1 110 62-184 207-332 (398)
498 PRK00676 hemA glutamyl-tRNA re 35.6 31 0.0008 14.9 4.1 29 3-31 175-203 (338)
499 PRK10624 L-1,2-propanediol oxi 35.6 31 0.0008 14.9 6.0 77 1-78 5-90 (381)
500 TIGR02022 hutF formiminoglutam 35.5 25 0.00064 15.6 1.9 19 8-26 136-154 (466)
No 1
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=100.00 E-value=0 Score=1387.34 Aligned_cols=441 Identities=63% Similarity=1.049 Sum_probs=435.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf 97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP 80 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP 80 (443)
|++|||||||||||+||+|||+||||+||||||..|+++.||.+|||++|||+.++..|||||+.||.+|+.+|+|||||
T Consensus 1 ~~~K~lIANRGEIA~RIiRAC~ElGi~TVAVyS~aD~dalHV~LADEavCIGea~S~kSYL~IpnI~aAA~~tG~~AiHP 80 (451)
T TIGR00514 1 MLDKILIANRGEIALRIIRACKELGIATVAVYSTADRDALHVLLADEAVCIGEAPSAKSYLNIPNIIAAAEITGADAIHP 80 (451)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCEECC
T ss_conf 98548995260678899998886498639860044133234343025300686221124411588999887748807628
Q ss_pred CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC-C--CHHHHHHHHHCCCCHHHHHC
Q ss_conf 85313109766688984592162689899987218998877664224433243334-5--57999873200330122000
Q gi|254780268|r 81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE-V--YPHTAMPIAKEIGFPVLVKA 157 (443)
Q Consensus 81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~-~--~~~ea~~~a~~iGyPviiKp 157 (443)
|||||||||+||+.|++.|++||||+|++|++||||..||++|+++||||+||+.. . +.++..+.|++|||||||||
T Consensus 81 GYGFLSENA~FAe~c~~~g~~FIGP~pe~Ir~MGDK~~A~~~mKkaGVP~VPGS~GP~~~~~~e~~~~A~~IGyPv~IKA 160 (451)
T TIGR00514 81 GYGFLSENADFAEICEDHGITFIGPSPEAIRLMGDKVTAKETMKKAGVPVVPGSDGPLVEDEEEAVRIAKEIGYPVIIKA 160 (451)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 87734431247889873882666787120112688689999997488766238888631027889999974789689996
Q ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 23457821688875066899999875432125899816884434201103315777347870236566542113562255
Q gi|254780268|r 158 SAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIW 237 (443)
Q Consensus 158 ~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkii 237 (443)
+.||||||||+|++++||.++|..++.||.++|+|+.|++||||++|||||+|||+|.|||+||||||||||||||||+|
T Consensus 161 ~AGGGGRGmR~vR~~~El~~~~~~a~~EA~AAF~N~~VYiEKfienPRH~E~QVLAD~~GN~vyLgERDCSiQRR~QKll 240 (451)
T TIGR00514 161 TAGGGGRGMRVVREEDELVKLIKAARAEAAAAFNNDGVYIEKFIENPRHVEIQVLADKYGNVVYLGERDCSIQRRNQKLL 240 (451)
T ss_pred ECCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEECCCCCCHHCCCCCEE
T ss_conf 25899722588628689999999999999740287962786333699407999875178887897121462000465446
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCC-EEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 4034455889999999999999886515434102458972-883-49982276543320167886325620112322210
Q gi|254780268|r 238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQ-FYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASE 315 (443)
Q Consensus 238 EeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~-~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g 315 (443)
||||||.|++++|++|-+.|+++++.+||.|+||||||+| +++ |||||||||+|||||||||||||||+++||+||.|
T Consensus 241 EEaPsP~Lt~ElR~~~G~~Av~aA~~iGY~GaGTvEFLld~~~~rFYFmEMNTRIQVEHPVTEmvtGvDL~keQirvA~G 320 (451)
T TIGR00514 241 EEAPSPALTSELREKMGDAAVKAAKSIGYTGAGTVEFLLDKNGQRFYFMEMNTRIQVEHPVTEMVTGVDLIKEQIRVAAG 320 (451)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHCCCEECCEEEEEEECCCCEEEEEEECCEEEEEECCEEEEECHHHHHHHHHHHCC
T ss_conf 54688877889999998999999986498003516888625887357765176021110320146002578889987378
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHH
Q ss_conf 22222113333201245330245662-21111244215886689984467776023877077768433899995599899
Q gi|254780268|r 316 NRLSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKE 394 (443)
Q Consensus 316 ~~l~~~~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~ 394 (443)
++|+++|++|.++||||||||||||| +||+||||+|+.|.+|+|+||||||++|+||.|||||||||||||+||+||++
T Consensus 321 ~~L~~kQe~v~~~GHaieCRINAEDP~~~F~PsPG~i~~ylpPGG~gVR~DSh~Y~gY~iPPyYDSmIaKlI~~G~~R~~ 400 (451)
T TIGR00514 321 EKLSLKQEDVKLRGHAIECRINAEDPIKNFLPSPGRITSYLPPGGPGVRVDSHVYSGYTIPPYYDSMIAKLITYGKTREE 400 (451)
T ss_pred CCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEECCCCCCCCCCHHCCEEEEECCCCHHH
T ss_conf 95664311479998899865145587877868885015546879752201003448787698402020124640589889
Q ss_pred HHHHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHC
Q ss_conf 99999987654088263778889998968988955886531687510
Q gi|254780268|r 395 CMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKY 441 (443)
Q Consensus 395 Ai~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~ 441 (443)
||+||.|||+|+.|.||+|||+||+.||++|.|.+|+++|+||+++-
T Consensus 401 AI~rMKrAL~E~~I~G~~TtI~fH~~iL~~e~F~~G~~~~~f~~~~~ 447 (451)
T TIGR00514 401 AIARMKRALSEFIITGIKTTIPFHQRILENENFLSGGVNIKFLEKKL 447 (451)
T ss_pred HHHHHHHHHHHHEECCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999887542220771058468988627865224873379998774
No 2
>TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084 Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast). The allophanate hydrolase domain of the yeast enzyme is not included in this entry and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from O. sagaranensis was shown to be highly active on acetamide and formamide as well as urea..
Probab=100.00 E-value=0 Score=1307.58 Aligned_cols=438 Identities=44% Similarity=0.767 Sum_probs=428.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf 70686644709999999988880965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r 2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG 81 (443)
Q Consensus 2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG 81 (443)
|+|||||||||||||||||+|+|||+||||||++|+.|+||..||++++|++.+..+|||++|+||++||++|++|||||
T Consensus 1 F~~vLiANRGEIA~RiirTL~~lgi~sVAvYS~aD~~s~HV~~AD~A~~Lg~~~A~esYL~~dkil~~Ak~tGA~AI~PG 80 (1226)
T TIGR02712 1 FKTVLIANRGEIAVRIIRTLRKLGIRSVAVYSDADRASQHVLDADEAVCLGGATAAESYLDIDKILAIAKKTGAQAIHPG 80 (1226)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCEECCCCCCHHHHHCCHHHHHHHHHHCCCCEEECC
T ss_conf 96567764437999999998771863798632100215782360502605895413222147899999975589387458
Q ss_pred CCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf 53131097666889845921626898999872189988776642244332433345-57999873200330122000234
Q gi|254780268|r 82 YGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV-YPHTAMPIAKEIGFPVLVKASAG 160 (443)
Q Consensus 82 yGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~-~~~ea~~~a~~iGyPviiKp~~g 160 (443)
||||||||+||++|+++||.||||+|+.|+.+|-|+.||++|+++|||.+||+... +.+||++.|++||||||||+++|
T Consensus 81 YGFLSENA~FA~~C~~aGI~FvGPtpe~ir~fGLKHtAR~lA~~aGVPL~PGTgLL~sl~eA~~~A~~IGYPVMlKSTAG 160 (1226)
T TIGR02712 81 YGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLESLDEALEAAKEIGYPVMLKSTAG 160 (1226)
T ss_pred CCCCCCCHHHHHHHHHCCCEEECCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 87235787799899847957877870667443832568999996688988851558779999999864699547987078
Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 57821688875066899999875432125899816884434201103315777347870236566542113562255403
Q gi|254780268|r 161 GGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEA 240 (443)
Q Consensus 161 GGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEea 240 (443)
|||+||+.|++.+||.++|+.+++.++++|+|..||+||||+.+|||||||+|||+|++++|||||||+||||||||||+
T Consensus 161 GGGIGl~~c~~~~eL~~aFe~Vkrlg~~~F~daGVFlErfv~~ARHvEVQifGDG~G~v~aLGeRDCSLQRRNQKVvEET 240 (1226)
T TIGR02712 161 GGGIGLQKCDNAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEET 240 (1226)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEC
T ss_conf 76524511189899999999989988632363514340320378428998752697336997116754444566558727
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 4455889999999999999886515434102458972--88349982276543320167886325620112322210222
Q gi|254780268|r 241 HSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE--NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRL 318 (443)
Q Consensus 241 Pap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~--~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l 318 (443)
|||+||+++|++|.++|.+|+++|+|+++|||||+|| .++||||||||||||||||||+|||||||+|||++|+|..+
T Consensus 241 PAP~LP~~~R~~L~~AA~~Lg~~V~YrSAGTVEFiYD~~~d~FYFLEVNTRLQVEHPvTE~VtGlDLVEWM~r~AAg~~p 320 (1226)
T TIGR02712 241 PAPNLPEETRAALLAAAEKLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVEHPVTEMVTGLDLVEWMVRIAAGELP 320 (1226)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHCCCCC
T ss_conf 74686489999999999999997187637604774022108712113234111335730178464089899997168888
Q ss_pred CCCCCCC------CCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCC--CCEEEECCCCCCCEECCCCCCCEEEEEEEC
Q ss_conf 2211333------3201245330245662-211112442158866899--844677760238770777684338999955
Q gi|254780268|r 319 SVQQKDI------TFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGG--LGIRMDSASYQGYTVPSYYDSLIAKLIVHG 389 (443)
Q Consensus 319 ~~~~~~i------~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~~--~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g 389 (443)
++.+-.+ .++|||||+||||||| +||.||||.||...||+. ..|||||||..|.+|||+|||||||||+||
T Consensus 321 ~~~~~~~~~~~~l~p~G~aiEaRvYAEnP~k~F~PSpG~Lt~V~FP~~~G~~~RvDTWV~~Gtevsp~YDPmlAKiIv~g 400 (1226)
T TIGR02712 321 DFDSLNIEIFDNLTPRGAAIEARVYAENPAKNFQPSPGLLTEVQFPDDGGKAVRVDTWVETGTEVSPEYDPMLAKIIVHG 400 (1226)
T ss_pred CHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEECEECCCCEECCCCCCCEEEEEECC
T ss_conf 85244300035788750389999844077677726986068877278889537870211278356776587424466436
Q ss_pred CCHHHHHHHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHH
Q ss_conf 99899999999876540882637788899989689889558865316875
Q gi|254780268|r 390 KNRKECMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLEN 439 (443)
Q Consensus 390 ~~R~~Ai~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~ 439 (443)
+||++|++||..||++|+|.|+.||++||++|+.++.|++|+.+|++|+.
T Consensus 401 ~~R~~A~~kL~~AL~~T~v~Gi~TNLdYLr~i~~s~~F~~g~~sT~~L~~ 450 (1226)
T TIGR02712 401 KDREDAIAKLSQALDETRVYGIETNLDYLRSILSSEVFRSGQVSTRLLNS 450 (1226)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 79789999999887301012354247899988401334102577664005
No 3
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1295.61 Aligned_cols=437 Identities=48% Similarity=0.832 Sum_probs=425.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCC-------CCCCHHCCHHHHHHHHHHCCCC
Q ss_conf 686644709999999988880965999858557718776758579991899-------8530006989999999870998
Q gi|254780268|r 4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPP-------SSKDSYLNIQQIVAACEVTGAD 76 (443)
Q Consensus 4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~-------~~~~sYldi~~ii~~a~~~~~d 76 (443)
|||||||||||+||.|||+||||+||||||..|+.|+|...|||+|.+|.+ .+.++||+||.||.+||++++|
T Consensus 1 kvLVANRgEIAIRvFRAa~EL~i~tVAvYs~eD~~~~Hr~KADEaY~vG~g~~lard~~Pv~AYL~I~eiI~vAk~~~vD 80 (1169)
T TIGR01235 1 KVLVANRGEIAIRVFRAANELGIRTVAVYSEEDKLSLHRQKADEAYLVGEGPQLARDLKPVEAYLSIDEIIRVAKKNKVD 80 (1169)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 91453166520246423101387269996531574557402341001147631010268721304715698996007897
Q ss_pred EEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC--CHHHHHHHHHCCCCHHH
Q ss_conf 9945853131097666889845921626898999872189988776642244332433345--57999873200330122
Q gi|254780268|r 77 AIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV--YPHTAMPIAKEIGFPVL 154 (443)
Q Consensus 77 aihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~--~~~ea~~~a~~iGyPvi 154 (443)
||||||||||||.+||++|.++||.||||+++.|+++|||..||++|.++|||++||+..+ +.+|+++|++++|||||
T Consensus 81 aiHPGYGfLSE~~~Fa~~v~~aGi~FIGP~a~~~~~~GdKV~AR~~A~~aGvPvvPgt~Gp~~t~eev~~f~~~~GYPvi 160 (1169)
T TIGR01235 81 AIHPGYGFLSENSEFADAVVKAGIVFIGPKAEVLDQLGDKVAARNLAIKAGVPVVPGTDGPVETLEEVLDFAKAIGYPVI 160 (1169)
T ss_pred EEECCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 77088562248878999998689567379747775405768999888877887636886875259999999975699589
Q ss_pred HHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 00023457821688875066899999875432125899816884434201103315777347870236566542113562
Q gi|254780268|r 155 VKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQ 234 (443)
Q Consensus 155 iKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~q 234 (443)
+||++||||||||||++.+|+.++|++|++||+++||++.|||||||+.|||||||||||.+||+|||+|||||||||||
T Consensus 161 ~KAs~GGGGRGMRvvR~~~dv~~~~~rA~sEA~AAFGnd~~yvEklie~pkHiEvQ~LGD~~GNVVHLFERDCSVQRRhQ 240 (1169)
T TIGR01235 161 IKASYGGGGRGMRVVRSEEDVADAFQRAKSEAKAAFGNDEVYVEKLIERPKHIEVQLLGDKHGNVVHLFERDCSVQRRHQ 240 (1169)
T ss_pred EEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCCEEECC
T ss_conf 87216889720168607567999988876887310489806985102488207898763488987888750776200055
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-C-CCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHH
Q ss_conf 2554034455889999999999999886515434102458972-8-8349982276543320167886325620112322
Q gi|254780268|r 235 KIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-N-GQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYV 312 (443)
Q Consensus 235 kiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~-~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~ 312 (443)
||||.||||.||+++|++|.++|+|+++++||.|+||||||+| + |+||||||||||||||||||+|||||||++||+|
T Consensus 241 KVvE~APA~~Ls~e~Rd~~~~~AvkLAk~~nY~nAGTvEFL~d~~~G~FYFIEvNpRiQVEHTvTE~iTGiDiV~aQI~v 320 (1169)
T TIGR01235 241 KVVEVAPAPSLSREVRDEIAEYAVKLAKEVNYINAGTVEFLVDNDTGKFYFIEVNPRIQVEHTVTEEITGIDIVQAQIRV 320 (1169)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEEEEECCCHHHHHHHHH
T ss_conf 07886788778888999999999999874289888724885554889377899888000115586467340377789999
Q ss_pred HHCCCCC-----CC-CCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECC-CCCCCEECCCCCCCEEE
Q ss_conf 2102222-----21-13333201245330245662-21111244215886689984467776-02387707776843389
Q gi|254780268|r 313 ASENRLS-----VQ-QKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSA-SYQGYTVPSYYDSLIAK 384 (443)
Q Consensus 313 a~g~~l~-----~~-~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~-~~~G~~i~~~yDsmlaK 384 (443)
|.|.+|+ +. |++|..+||||||||+.||| +||+|++|+|+.||.-+|.|||+||| -|+|..|||||||||-|
T Consensus 321 a~G~sL~~~~~g~~~Q~~I~t~GyAiQcRvTTEDP~~dF~PdtGri~~YRSa~G~GvRLD~G~sY~GAiItpYYDsLLVK 400 (1169)
T TIGR01235 321 AEGASLPSKQLGVPEQEDIKTRGYAIQCRVTTEDPANDFQPDTGRIEVYRSAGGFGVRLDGGNSYAGAIITPYYDSLLVK 400 (1169)
T ss_pred HCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEE
T ss_conf 65574687757788654403501488722544586426688967278998178431761676641463016752331010
Q ss_pred EEEECCCHHHHHHHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHH
Q ss_conf 99955998999999998765408826377888999896898895588653168751
Q gi|254780268|r 385 LIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENK 440 (443)
Q Consensus 385 iI~~g~~R~~Ai~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~ 440 (443)
+++||.|.++|.+||.|||+||+|+||+||||||.+|+.||.|++|.|+|.|||++
T Consensus 401 ~~~~A~~~~~a~~kM~RaL~EFRIRGvkTNipFL~~v~~~~kF~~g~Y~T~FID~t 456 (1169)
T TIGR01235 401 VSAWASTFEEAAAKMVRALREFRIRGVKTNIPFLLNVLKHPKFLEGSYDTSFIDTT 456 (1169)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEECCCEEEEEECCC
T ss_conf 01037898999999754201110022112537999985387121570568773388
No 4
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=0 Score=1247.48 Aligned_cols=442 Identities=67% Similarity=1.098 Sum_probs=437.2
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf 97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP 80 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP 80 (443)
||||||||||||||+||+||||||||+||+|||++|++|+|+++|||+|+||+++..+||||+++||++|+++++|||||
T Consensus 1 M~~kvLIANRGEIA~RiiRt~~elgi~tVavys~~D~~a~hv~~ADeav~ig~~~~~~sYln~~~Ii~~A~~~g~dAihP 80 (449)
T PRK08591 1 MFDKILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHP 80 (449)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHHCCCCHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEC
T ss_conf 96448896784999999999998499499986857527852885988899589884333048999999999829998972
Q ss_pred CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHCCCCHHHHHCC
Q ss_conf 8531310976668898459216268989998721899887766422443324333--45579998732003301220002
Q gi|254780268|r 81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG--EVYPHTAMPIAKEIGFPVLVKAS 158 (443)
Q Consensus 81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~--~~~~~ea~~~a~~iGyPviiKp~ 158 (443)
||||||||++||++|+++|++||||++++|+.||||..+|++|+++|||++||+. ..+.+++.++++++||||||||+
T Consensus 81 GYGFLSEna~FA~~~~~~Gi~fIGP~~~~i~~~GdK~~ar~~a~~agVPvvpgs~~~~~~~~ea~~~a~~iGyPv~iKA~ 160 (449)
T PRK08591 81 GYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKAT 160 (449)
T ss_pred CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 74243258999999998799999929999998769899999999839997888766556899999999874996698852
Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 34578216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r 159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238 (443)
Q Consensus 159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE 238 (443)
+|||||||++|++++||.++|+++++||+++|||+.||+||||+++|||||||++|++||++||||||||+||||||+||
T Consensus 161 ~GGGGrGmrvv~~~~el~~~~~~~~~Ea~~aFg~~~v~iEk~i~~~RHIEVQilgD~~Gn~vhl~eRdCSiQRR~QKvIE 240 (449)
T PRK08591 161 AGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLE 240 (449)
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEECCCCCCCHHHCCCEEEE
T ss_conf 68987769998567899999999999999737998567877125653678999863899889874775672014613799
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 03445588999999999999988651543410245897288349982276543320167886325620112322210222
Q gi|254780268|r 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRL 318 (443)
Q Consensus 239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l 318 (443)
|||||.|+++++++|.++|+++++++||+|+||||||+|+++||||||||||||||||||++||+|||++||++|.|.+|
T Consensus 241 EaPap~l~~~~r~~m~~~A~~la~~v~Y~~aGTvEFL~d~~~fyFlEmNtRlQVEHpVTE~vtGiDLV~~Qi~iA~G~~L 320 (449)
T PRK08591 241 EAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYENGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQIRIAAGEPL 320 (449)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEEEEECCCCCCCCCCHHHHCCCHHHHHHHHHCCCCC
T ss_conf 77998789999999999999999974964210389999789089996243412456522665077199999998679999
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHH
Q ss_conf 22113333201245330245662211112442158866899844677760238770777684338999955998999999
Q gi|254780268|r 319 SVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMR 398 (443)
Q Consensus 319 ~~~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~ 398 (443)
++.|+++.++|||||||||||||+||+||+|+|+.|++|+|+|||+||++++|++|||+|||||||+|+||+||++|++|
T Consensus 321 ~~~q~~i~~~GhAIE~Ri~AEdP~~f~Ps~G~i~~~~~P~g~gvRvDt~~~~G~~v~~~YDsmlaKlI~~g~~R~~Ai~r 400 (449)
T PRK08591 321 SIKQEDIVFRGHAIECRINAEDPKNFMPSPGKITRYHPPGGPGVRVDSHVYTGYTIPPYYDSMIGKLIVHGETREEAIAR 400 (449)
T ss_pred CCCCCCCCCCCCCHHEEECCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCEECCCCCCHHCEEEEECCCHHHHHHH
T ss_conf 97710067576112101013584546788727879974899988995881568984887455320388978999999999
Q ss_pred HHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHCC
Q ss_conf 99876540882637788899989689889558865316875106
Q gi|254780268|r 399 LNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKYL 442 (443)
Q Consensus 399 l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~~ 442 (443)
|.+||+++.|.|++||++||++||++|+|++|+++|+|||+|++
T Consensus 401 l~~AL~e~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fle~~la 444 (449)
T PRK08591 401 MKRALSEFVIDGIKTTIPLHLRLLNDPNFQAGDYNIHYLEKKLA 444 (449)
T ss_pred HHHHHHCCEEECCCCCHHHHHHHHCCHHHCCCCCCHHHHHHHHH
T ss_conf 99997366997966869999999679212289975148888633
No 5
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=0 Score=1244.76 Aligned_cols=440 Identities=50% Similarity=0.880 Sum_probs=428.6
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCC-CCCHHCCHHHHHHHHHHCCCCEEE
Q ss_conf 9706866447099999999888809659998585577187767585799918998-530006989999999870998994
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPS-SKDSYLNIQQIVAACEVTGADAIH 79 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~-~~~sYldi~~ii~~a~~~~~daih 79 (443)
-|||||||||||||+||+|||+||||+||+|||++|++|+|+.+|||+|+||++. +.+||||+++||++|++++|||||
T Consensus 4 ~~~kvLiANRGEIA~Ri~Ra~~elgi~tVavys~~D~~s~h~~~ADea~~ig~~~~p~~sYL~~~~ii~~A~~~~~dAiH 83 (1147)
T PRK12999 4 KIKKVLVANRGEIAIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKGPIEAYLDIDEIIRVAKQAGVDAIH 83 (1147)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHCCEEEEECCCCCHHHHHCCHHHHHHHHHHHCCCEEE
T ss_conf 68789996681999999999998399589997846457825885885677289997131112999999999994989997
Q ss_pred CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC--CCHHHHHHHHHCCCCHHHHHC
Q ss_conf 585313109766688984592162689899987218998877664224433243334--557999873200330122000
Q gi|254780268|r 80 PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE--VYPHTAMPIAKEIGFPVLVKA 157 (443)
Q Consensus 80 PGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~--~~~~ea~~~a~~iGyPviiKp 157 (443)
|||||||||++||++|+++||+||||++++|+.+|||..+|++|+++|||++||+.. .+.+++.++++++|||+||||
T Consensus 84 PGYGFLSEn~~Fa~~~~~~gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvpgs~~~~~~~~~~~~~a~~iGyPv~iKA 163 (1147)
T PRK12999 84 PGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGTEGPIDDLEEALEFAEEIGYPLMLKA 163 (1147)
T ss_pred CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 79622007999999999878999894999999855999999999983989888989988999999999987199789997
Q ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 23457821688875066899999875432125899816884434201103315777347870236566542113562255
Q gi|254780268|r 158 SAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIW 237 (443)
Q Consensus 158 ~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkii 237 (443)
+.||||||||+|++++||.++|++|++||+++|||+.||+||||+++|||||||+||++||++||+|||||+||||||+|
T Consensus 164 ~~GGGGrGmrvv~~~~~l~~~~~~a~~EA~~aFG~~~v~~Ek~i~~~rHiEvQilgD~~Gnvvhl~eRdCSiQRR~QKvi 243 (1147)
T PRK12999 164 SAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKVV 243 (1147)
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEECCCCCCHHHCCCEEE
T ss_conf 77898051489589899999999999999983699756885503678647999996288988871476564322351357
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 4034455889999999999999886515434102458972-883499822765433201678863256201123222102
Q gi|254780268|r 238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASEN 316 (443)
Q Consensus 238 EeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~ 316 (443)
||||||.|++++|++|.++|+++++++||+|+||||||+| +++||||||||||||||||||++||+|||++||+||.|+
T Consensus 244 EeaPap~l~~~~r~~l~~~A~~~a~~v~Y~~aGTvEFL~d~~~~fyFiE~N~RlQVEH~VTE~vtGiDlV~~Qi~iA~G~ 323 (1147)
T PRK12999 244 EIAPAPGLSPELREEICEAAVKLARAVGYVNAGTVEFLVDADGNFYFIEVNPRIQVEHTVTEMVTGIDIVQSQILIAEGA 323 (1147)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCHHHEECCCHHHHHHHHHCCC
T ss_conf 86689999999999999999999997697643227899838887899986656564565302101550899999985799
Q ss_pred CCC------CCCCCCCCCHHHHHHHCCCCCCC-CCCCCCCCEEEEECCCCCCEEEECC-CCCCCEECCCCCCCEEEEEEE
Q ss_conf 222------21133332012453302456622-1111244215886689984467776-023877077768433899995
Q gi|254780268|r 317 RLS------VQQKDITFSGHAIECRINAEDPE-NFIPNPGEITYFHAPGGLGIRMDSA-SYQGYTVPSYYDSLIAKLIVH 388 (443)
Q Consensus 317 ~l~------~~~~~i~~~g~aie~Ri~aEdp~-~f~Ps~G~i~~~~~p~~~gvRvDt~-~~~G~~i~~~yDsmlaKiI~~ 388 (443)
+|+ +.|++|.++|||||||||||||. ||+|++|+|+.|++|+|+|||+|+| .++|++|||||||||+|+|+|
T Consensus 324 ~L~~~~~~~~~Q~~i~~~G~Aie~Ri~aEdp~~~F~P~~G~i~~~~~p~G~gvR~D~g~~~~G~~v~p~yDsllaK~i~~ 403 (1147)
T PRK12999 324 TLGDLEVGIPSQEDIRLRGHAIQCRITTEDPANNFMPDTGRITAYRSPGGFGVRLDGGNAYAGAVITPYYDSLLVKLTTW 403 (1147)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCHHHHHEEE
T ss_conf 75667678775446776648999998611775256788774037846999998967786767896688757042522266
Q ss_pred CCCHHHHHHHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHH
Q ss_conf 5998999999998765408826377888999896898895588653168751
Q gi|254780268|r 389 GKNRKECMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENK 440 (443)
Q Consensus 389 g~~R~~Ai~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~ 440 (443)
|+||++|++||.|||+|+.|+||+||++||++||+||+|++|+++|+|||+|
T Consensus 404 g~~r~~ai~r~~raL~e~~i~Gv~Tni~fl~~vl~~~~F~~g~~~T~fid~~ 455 (1147)
T PRK12999 404 GRTFEEAIARMDRALREFRIRGVKTNIPFLENVLKHPDFLAGDYTTSFIDET 455 (1147)
T ss_pred CCCHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHCCCCEECCCCCCCCCCCC
T ss_conf 6989999999999864239979767999999985792401578602102089
No 6
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=0 Score=1247.65 Aligned_cols=443 Identities=54% Similarity=0.908 Sum_probs=436.2
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf 97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP 80 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP 80 (443)
||+|||||||||||||+|||||+|||.||+||||+|++++||++|||+|+|||.+..+||||+++||++|+++|+|||||
T Consensus 1 mf~KiLIANRGEIAcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHP 80 (645)
T COG4770 1 MFSKILIANRGEIACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHP 80 (645)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCHHHHCCCCCHHHHHCCHHHHHHHHHHHCCCCCCC
T ss_conf 96248872464346899999998099569997257778526664122443179960121226889999999738321368
Q ss_pred CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC--CHHHHHHHHHCCCCHHHHHCC
Q ss_conf 853131097666889845921626898999872189988776642244332433345--579998732003301220002
Q gi|254780268|r 81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV--YPHTAMPIAKEIGFPVLVKAS 158 (443)
Q Consensus 81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~--~~~ea~~~a~~iGyPviiKp~ 158 (443)
||||||||++||++|+++|++||||++++|+.||||+.+|++|.++|||++||+... +.+++..++++|||||+||++
T Consensus 81 GYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAs 160 (645)
T COG4770 81 GYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKAS 160 (645)
T ss_pred CCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 84212359899999997791897889799998446799999999749980689787445899999999863985899963
Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 34578216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r 159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238 (443)
Q Consensus 159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE 238 (443)
.|||||||++|++++|+.++|++|++||+++|||++||||||++.|||||+||++|+|||++||||||||+||||||+||
T Consensus 161 aGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQKVIE 240 (645)
T COG4770 161 AGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIE 240 (645)
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCEEEEEEEECCCCCEEEEECCCCCHHHHCCHHHH
T ss_conf 68997753762688999999999999988504886476245517874489999862778788863253324231122320
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 034455889999999999999886515434102458972-8834998227654332016788632562011232221022
Q gi|254780268|r 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENR 317 (443)
Q Consensus 239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~ 317 (443)
|||||+|++++|++|.+.|+++++++||.|+|||||++| ++.||||||||||||||||||++||+|||+|||++|.|++
T Consensus 241 EAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQVEHPVTE~iTGiDLVewqiRVA~Gek 320 (645)
T COG4770 241 EAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQVEHPVTELITGIDLVEWQIRVASGEK 320 (645)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEECCEECCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 08999999999999999999999862977575589998389868999862202025641224201389999999743885
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHH
Q ss_conf 222113333201245330245662-2111124421588668998446777602387707776843389999559989999
Q gi|254780268|r 318 LSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECM 396 (443)
Q Consensus 318 l~~~~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai 396 (443)
|++.|++++.+|||||+||||||| +||+|++|+|++|++|.+++||+|||+.+|++||+||||||||||+||+||++|+
T Consensus 321 L~~~Q~di~l~GhAiE~RiyAEDp~r~FLPs~G~l~~~~~P~~~~vRvDsGV~~G~~Is~~YDpMiAKLi~~G~dR~eAl 400 (645)
T COG4770 321 LPFTQDDIPLNGHAIEARIYAEDPARGFLPSTGRLTRYRPPAGPGVRVDSGVREGDEISPFYDPMIAKLIVHGADREEAL 400 (645)
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf 77665665446505788873347555766788505766288888431236743387235553558888864388899999
Q ss_pred HHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHCCC
Q ss_conf 99998765408826377888999896898895588653168751069
Q gi|254780268|r 397 MRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKYLK 443 (443)
Q Consensus 397 ~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~~~ 443 (443)
++|.+||+++.|.|+.||++||+.++.||.|+.|+.+|.||.++|.+
T Consensus 401 ~rl~~AL~~~~v~Gi~tn~~Fl~al~~~~~F~~g~~~T~~i~r~~~~ 447 (645)
T COG4770 401 DRLRRALAEFEVEGIATNIPFLRALMADPRFRGGDLDTGFIAREIED 447 (645)
T ss_pred HHHHHHHHHHEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCC
T ss_conf 99999998608447414699999985296400477763021110234
No 7
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=0 Score=1230.51 Aligned_cols=443 Identities=52% Similarity=0.871 Sum_probs=436.7
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf 97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP 80 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP 80 (443)
||||||||||||||+||+|||||||++||+|||++|++++|+++||++|+|+++++.+||||+++||++|++++||||||
T Consensus 1 M~~kvLIANRGEIA~Ri~rt~~elgi~tvavys~~D~~a~hv~~Ade~v~ig~~~~~~sYln~~~Ii~~A~~~g~dAIHP 80 (449)
T PRK06111 1 MFQKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADEDALHVKLADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHP 80 (449)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHHCCCHHHHHCCEEEEECCCCHHHHHCCHHHHHHHHHHHCCCEEEC
T ss_conf 97618998787999999999998499799991736456835874989888089974543339999999999839999977
Q ss_pred CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC--CCHHHHHHHHHCCCCHHHHHCC
Q ss_conf 85313109766688984592162689899987218998877664224433243334--5579998732003301220002
Q gi|254780268|r 81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE--VYPHTAMPIAKEIGFPVLVKAS 158 (443)
Q Consensus 81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~--~~~~ea~~~a~~iGyPviiKp~ 158 (443)
||||||||++||++|+++|++||||++++|+.||||..+|++|+++|||++||+.. .+.+++.+++++|||||||||+
T Consensus 81 GYGFLSEna~FA~~~~~~gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvPG~~~~~~~~~ea~~~a~~iGyPvliKAa 160 (449)
T PRK06111 81 GYGLLSENASFAERCKEEGIVFIGPSAEIIAKMGSKIEARRAMQAAGVPVVPGITTALEDAEEAIAIARQIGYPVMLKAS 160 (449)
T ss_pred CCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 98731169899999998899899929999998648699999999839985578677789999999999865980266203
Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 34578216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r 159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238 (443)
Q Consensus 159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE 238 (443)
+|||||||++|++++||.++|+.+++||+++|||+.||+||||+++|||||||++|++||++||||||||+||||||+||
T Consensus 161 ~GGGGrGmriv~~~~el~~~~~~~~~eA~~~Fg~~~v~iEk~i~~~RHIEVQvl~D~~Gn~vhlgeRdCSiQRr~QKviE 240 (449)
T PRK06111 161 AGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYLEKYIEDARHIEIQLLADTHGNTVYLWERECSVQRRHQKVIE 240 (449)
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCEEE
T ss_conf 58986720895799999999999999999863996025544135773379999970688888830512266357741699
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 034455889999999999999886515434102458972-8834998227654332016788632562011232221022
Q gi|254780268|r 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENR 317 (443)
Q Consensus 239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~ 317 (443)
|||||.|+++++++|.++|+++++++||+|+||||||+| +++||||||||||||||||||++||+|||++|+++|.|.+
T Consensus 241 eaPap~l~~~~r~~~~~~A~~la~~v~Y~g~gTvEFl~d~~~~fyFlEvNtRlQVEHpVTE~vtGiDLV~~Qi~iA~G~~ 320 (449)
T PRK06111 241 EAPSPFLDEETRKAMGEAAVQAAKAIGYTNAGTIEFLVDNQKNFYFLEMNTRLQVEHPVTEEITGIDLVEQQLRIAAGEK 320 (449)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHCCCC
T ss_conf 78999999999999999999998871710246899999489868999534354446640455538848999999867998
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHH
Q ss_conf 22211333320124533024566221111244215886689984467776023877077768433899995599899999
Q gi|254780268|r 318 LSVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMM 397 (443)
Q Consensus 318 l~~~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~ 397 (443)
|+++|+++.++|||||||||||||++|.||+|+|+.|++|+|+|||+||+++.|++|||+|||||||||+||+||++|++
T Consensus 321 L~~~q~~i~~~GhAIe~Ri~AEdp~~f~Ps~G~i~~~~~P~g~gvRvDs~~~~G~~v~~~yDsmlaKlI~~g~~R~~Ai~ 400 (449)
T PRK06111 321 LSFTQDDIKRSGHAIEVRIYAEDPKTFFPSPGKITDLTLPGGEGVRHDHAVENGVTVTPFYDPMIAKVIAHGETREEAIA 400 (449)
T ss_pred CCCCHHHCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCEECCCCCCHHHEEEEECCCHHHHHH
T ss_conf 99896666856120555551378565789986999998489998888536668597088756533256798799999999
Q ss_pred HHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHCCC
Q ss_conf 9998765408826377888999896898895588653168751069
Q gi|254780268|r 398 RLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKYLK 443 (443)
Q Consensus 398 ~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~~~ 443 (443)
||.+||+++.|.|++||++||++||++|+|++|+++|+|||+|++|
T Consensus 401 rl~~aL~e~~I~Gv~Tni~~l~~il~~~~f~~g~~~T~~l~~~l~~ 446 (449)
T PRK06111 401 RLHDALEELKVEGIKTNIPLLLQILEDPVFKKGGYTTGFLTKQLVK 446 (449)
T ss_pred HHHHHHHCCEEECCCCCHHHHHHHHCCHHHCCCCCCHHHHHHHHHH
T ss_conf 9999985169989438599999985884330799550699986465
No 8
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=0 Score=1228.60 Aligned_cols=440 Identities=56% Similarity=0.964 Sum_probs=434.7
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf 97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP 80 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP 80 (443)
||||||||||||||+||+||||||||+||+|||++|++++|+++||++|+||++++.+||||+++|+++|+++++|||||
T Consensus 1 Mf~kvLIANRGEIA~RiiRa~relGi~tVaVyS~~D~~s~hv~~ADe~~~ig~~~~~~sYLni~~Ii~~A~~~g~dAIhP 80 (497)
T PRK08654 1 MFKKILIANRGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNMERILEVAKKAGAEAIHP 80 (497)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHCCCCHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEC
T ss_conf 97608998787999999999998599399988837854899788898998489883212168999999999809999957
Q ss_pred CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHCCCCHHHHHCC
Q ss_conf 8531310976668898459216268989998721899887766422443324333--45579998732003301220002
Q gi|254780268|r 81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG--EVYPHTAMPIAKEIGFPVLVKAS 158 (443)
Q Consensus 81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~--~~~~~ea~~~a~~iGyPviiKp~ 158 (443)
||||||||++||++|+++||+||||++++|+.+|||..+|++|+++|||++||+. ..+.+++.+++++|||||||||+
T Consensus 81 GYGFLSEn~~fA~~~~~~Gi~fIGP~~~~I~~~GDK~~ar~la~~~gVPvvPG~~~~v~~~~ea~~~A~~IGyPV~iKAs 160 (497)
T PRK08654 81 GYGFLSENPKFAKACEKEGITFIGPSSNVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEVAEEIGYPVIIKAS 160 (497)
T ss_pred CHHHHHHCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 77675548999999998799999939999998658899999999809986899756679999999999864984587652
Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 34578216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r 159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238 (443)
Q Consensus 159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE 238 (443)
+|||||||++|++++||.++|++++++|.++|||++|||||||+++|||||||++|++||++|+||||||+||||||+||
T Consensus 161 ~GGGGrGmriV~~~~eL~~~~~~a~~eA~~~fgd~~v~iEk~i~~~RHIEVQvl~D~~GnvihlgeRdCSiQRr~QKvIE 240 (497)
T PRK08654 161 AGGGGIGMRVVYNEEELEEAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQVLADKHGNVIHLGDRECSIQRRHQKLIE 240 (497)
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEECCEECCEEECCCCEEE
T ss_conf 68888865899602568999999999988745998457988415553789999984479786714602343626863699
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 03445588999999999999988651543410245897288349982276543320167886325620112322210222
Q gi|254780268|r 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRL 318 (443)
Q Consensus 239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l 318 (443)
|||||.|+++++++|.++|+++++++||+|+|||||++|+|+||||||||||||||||||++||+|||++|+++|.|.+|
T Consensus 241 eaPap~l~~~~r~~m~~~Av~la~~vgY~gaGTVEFl~d~g~fyFlEmNtRlQVEHpVTE~vTGiDLV~~Qi~iA~G~~L 320 (497)
T PRK08654 241 EAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSNGNFYFLEMNTRLQVEHPITEMVTGIDIVKEQIKIAAGEKL 320 (497)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCEECCCEEEEEEECCEEEEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHCCCCC
T ss_conf 78999898899999999999988873430233279987488399996124422455421666087199999998679988
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHH
Q ss_conf 22113333201245330245662-21111244215886689984467776023877077768433899995599899999
Q gi|254780268|r 319 SVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMM 397 (443)
Q Consensus 319 ~~~~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~ 397 (443)
++.|+++.++||||||||||||| .+|.|++|+|+.|++|+|+|||+||+++.|++|||+|||||||+|+||+||++|++
T Consensus 321 ~~~q~~i~~~GhAIe~Ri~AEdP~~~F~Ps~G~i~~~~~P~g~gvRvD~~v~~G~~v~~~yDsmlaKli~~g~~R~~Ai~ 400 (497)
T PRK08654 321 SFKQEDITIRGHAIECRINAEDPLNDFAPSPGKIKRYRSPGGPGVRVDSGVHMGYTIPPYYDSMISKLIVWGRTREEAIA 400 (497)
T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCHHCEEEEECCCHHHHHH
T ss_conf 91003777751399998103588878645873660797599998899645646897388654333036798899999999
Q ss_pred HHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHH
Q ss_conf 9998765408826377888999896898895588653168751
Q gi|254780268|r 398 RLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENK 440 (443)
Q Consensus 398 ~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~ 440 (443)
||.+||+++.|.|++||++||++||++|+|++|+++|+|||+|
T Consensus 401 r~~rAL~e~~I~Gv~Tni~~l~~il~~~~F~~g~~~T~fle~~ 443 (497)
T PRK08654 401 RMKRALYEYIILGVKTNIPFHKAVMRNPNFIRGNLHTHFIEEL 443 (497)
T ss_pred HHHHHHHCCEEECCCCCHHHHHHHHCCCCEECCCCCCHHHHCC
T ss_conf 9999985469989548799999985790200799734267448
No 9
>PRK07178 acetyl-CoA carboxylase; Validated
Probab=100.00 E-value=0 Score=1221.43 Aligned_cols=440 Identities=50% Similarity=0.841 Sum_probs=432.4
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf 97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP 80 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP 80 (443)
||||||||||||||+||+||||||||+||+|||++|++|+|+++||++|+|++ .+.+||||+++||++|++++||||||
T Consensus 1 M~~kvLIANRGEIA~RiiRt~~elgi~tVavys~~D~~a~hv~~ADea~~ig~-~~~~sYln~~~Ii~~A~~~g~dAiHP 79 (471)
T PRK07178 1 MIKKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAHSIGA-DPLAGYLNPRKLVNLAVETGCDALHP 79 (471)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHCCEEEECCC-CHHHHHCCHHHHHHHHHHHCCCEEEC
T ss_conf 97608997786999999999998399489990837566836884888887188-72665449999999999969999977
Q ss_pred CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC--CCHHHHHHHHHCCCCHHHHHCC
Q ss_conf 85313109766688984592162689899987218998877664224433243334--5579998732003301220002
Q gi|254780268|r 81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE--VYPHTAMPIAKEIGFPVLVKAS 158 (443)
Q Consensus 81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~--~~~~ea~~~a~~iGyPviiKp~ 158 (443)
||||||||++||++|+++|++||||++++|+.+|||..+|++|.++|||++||+.. .+.+++.++++++|||||+||+
T Consensus 80 GYGFLSEn~~FA~~~~~~gi~FIGPs~~~i~~~GdK~~ar~~a~~~gvPv~pgs~~~v~~~eea~~~A~~iGyPV~lKAa 159 (471)
T PRK07178 80 GYGFLSENAELAEICAERGIKFIGPSADVIRRMGDKTEARRSMIKAGVPVTPGSEGNLADIDEALAEAERIGYPVMLKAT 159 (471)
T ss_pred CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 83331159899999997899899959999998748398999999869982689688656699999999866981586320
Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 34578216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r 159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238 (443)
Q Consensus 159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE 238 (443)
+|||||||++|++++||.++|+++++|++++|||++||+|||++++|||||||++|++||++||+|||||+||||||+||
T Consensus 160 ~GGGGrGmrvv~~~~el~~~~~~~~~EA~~aFg~~~v~lEk~i~~~RHIEVQilgD~~Gnvihl~eRdCSiQRr~QKvIE 239 (471)
T PRK07178 160 SGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSFGNVVHLFERDCSIQRRNQKLIE 239 (471)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCCEEE
T ss_conf 26876644997660568899999999999844997368766046762899999980789888884123465107873278
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 03445588999999999999988651543410245897288349982276543320167886325620112322210222
Q gi|254780268|r 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRL 318 (443)
Q Consensus 239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l 318 (443)
|||||.|+++++++|.++|+++++++||+|+||||||+++++||||||||||||||||||++||+|||++||++|.|.+|
T Consensus 240 eaPa~~l~~~~r~~l~~~A~~la~~v~Y~gaGTvEFlv~~~~~yFlEvNtRlQVEH~VTE~vtGiDLV~~Qi~iA~G~~L 319 (471)
T PRK07178 240 IAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLADGEVYFMEMNTRVQVEHTITEEITGIDIVREQIRIASGLPL 319 (471)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 76999888999999988999999964865012699998679479983246665554213666167589999998679978
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCC-CCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHH
Q ss_conf 221133332012453302456622-1111244215886689984467776023877077768433899995599899999
Q gi|254780268|r 319 SVQQKDITFSGHAIECRINAEDPE-NFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMM 397 (443)
Q Consensus 319 ~~~~~~i~~~g~aie~Ri~aEdp~-~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~ 397 (443)
++.|+++.++|||||||||||||. +|+||+|+|+.|++|+|+|||+||++++|++|||+|||||||||+||+||++|++
T Consensus 320 ~~~q~~i~~~GhAIe~Ri~AEDp~~~F~Ps~G~i~~~~~P~g~gvR~Dt~~~~G~~v~~~yDsmlaKli~~g~~R~~Ai~ 399 (471)
T PRK07178 320 SVKQEDIQHRGFALQFRINAEDPKNNFLPSFGKITRYYAPGGPGVRTDTAIYTGYTIPPYYDSMCLKLIVWALTWEEALD 399 (471)
T ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCEECCCCCCHHHHHEEECCCHHHHHH
T ss_conf 83102445588589999851377668656872577897699998898667768896188744253610488899999999
Q ss_pred HHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHC
Q ss_conf 99987654088263778889998968988955886531687510
Q gi|254780268|r 398 RLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKY 441 (443)
Q Consensus 398 ~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~ 441 (443)
||++||+++.|.|++||++||++||++|+|++|+++|+|||+|.
T Consensus 400 rl~~aL~e~~I~Gv~Tni~~l~~il~~~~F~~g~~~T~fle~~~ 443 (471)
T PRK07178 400 RGLRALDDMRVQGVKTTAPYYQEILRNPEFRSGQFNTSFVESHP 443 (471)
T ss_pred HHHHHHHCCEEECCCCCHHHHHHHHCCHHHCCCCCCCCHHHCCH
T ss_conf 99998626599794686999999867811227995010341797
No 10
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=0 Score=1219.23 Aligned_cols=442 Identities=60% Similarity=1.013 Sum_probs=435.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf 97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP 80 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP 80 (443)
||||||||||||||+||+|||++|||+||+|||++|++++|+++||++|+|+++.+.+||||+++|+++|+++++|||||
T Consensus 1 M~~kvLIANRGEIA~Ri~rt~~~lgi~tVavys~~D~~a~hv~~Ade~~~lg~~~~~~sYln~~~ii~~A~~~g~dAihP 80 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMGIETVAVYSEIDKDALHVQLADEAVCIGPASSKDSYLNIYNILSATVLTGAQAIHP 80 (447)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCHHHHHCCHHHHHHHHHHHCCCEEEC
T ss_conf 97549998987999999999998399599991703367854764989987399995651148999999999849989971
Q ss_pred CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHCCCCHHHHHCC
Q ss_conf 8531310976668898459216268989998721899887766422443324333--45579998732003301220002
Q gi|254780268|r 81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG--EVYPHTAMPIAKEIGFPVLVKAS 158 (443)
Q Consensus 81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~--~~~~~ea~~~a~~iGyPviiKp~ 158 (443)
||||||||++||++|+++|++||||++++|+.||||..+|++|+++|||++||+. ..+.++++++++++|||||+||+
T Consensus 81 GYGFLSEna~Fa~~~~~~Gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPv~pg~~~~v~~~~ea~~~a~~iGyPv~lKAa 160 (447)
T PRK05586 81 GFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMKKAGVPVVPGSEGEIENEEEALKIAEEIGYPVMVKAS 160 (447)
T ss_pred CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 85532238999999998798798959999998538499999999849976568688889999999999862982376305
Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 34578216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r 159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238 (443)
Q Consensus 159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE 238 (443)
+|||||||++|++++||.++|+.+++||+++|||+++|+||||+++|||||||++|++||++||||||||+||||||+||
T Consensus 161 ~GGGGrGmriv~~~~el~~~~~~a~~ea~~aFg~~~v~vEk~i~~~RHIEVQvl~D~~Gn~vhlgeRdCSiQRr~QKvIE 240 (447)
T PRK05586 161 AGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPRHIEFQILGDNYGNVVHLGERDCSLQRRNQKVLE 240 (447)
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCEEE
T ss_conf 69997736998999999999999999999827998468877247871799999970799888840642466568863799
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 034455889999999999999886515434102458972-8834998227654332016788632562011232221022
Q gi|254780268|r 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENR 317 (443)
Q Consensus 239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~ 317 (443)
|||||.|+++++++|.++|+++++++||+|+||||||+| +++||||||||||||||||||++||+|||++|+++|+|.+
T Consensus 241 eaPap~l~~~~r~~m~~~A~~la~~vgY~gaGTvEFl~d~~~~fyFlEvNtRlQVEH~VTE~vtGvDLV~~Qi~iA~G~~ 320 (447)
T PRK05586 241 EAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKIAYGEK 320 (447)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEECCCCCHHHHHHHHHCCCC
T ss_conf 88999888999999999999888860603332478887589978999334355556641100037768999999867999
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHH
Q ss_conf 222113333201245330245662-2111124421588668998446777602387707776843389999559989999
Q gi|254780268|r 318 LSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECM 396 (443)
Q Consensus 318 l~~~~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai 396 (443)
|++.|+++.++||||||||||||| ++|.|++|+|+.|++|+|+|||+||+++.|+++|++|||||||+|+||+||++|+
T Consensus 321 L~~~q~~i~~~GhAIe~Ri~AEdp~~~f~Ps~G~i~~~~~P~g~gvRvDt~~~~G~~v~~~yDsllaK~I~~g~~R~~Ai 400 (447)
T PRK05586 321 LSITQEDIKINGHAIECRINAEDPENGFMPCPGKIEELYIPGGLGVRLDSAIYSGYTIPPYYDSMIGKLIVYGKDREEAI 400 (447)
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCHHCEEEEECCCHHHHH
T ss_conf 99770107878569999821457887850587566589769999889878745879648864622324779889999999
Q ss_pred HHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHCC
Q ss_conf 9999876540882637788899989689889558865316875106
Q gi|254780268|r 397 MRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKYL 442 (443)
Q Consensus 397 ~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~~ 442 (443)
+||.+||+++.|.|++||++||+++|++|+|++|+++|+|||+|++
T Consensus 401 ~rl~~aL~~~~i~Gv~Tni~~l~~il~~~~F~~g~~~T~fle~~l~ 446 (447)
T PRK05586 401 QKMKRALGEFIIEGVKTNIDFQFIILENENFIKGTYDTSFIEKKLV 446 (447)
T ss_pred HHHHHHHHCCEEECCCCCHHHHHHHHCCHHHCCCCCCCHHHHHHCC
T ss_conf 9999998437997934879999998679302079831158775378
No 11
>PRK08463 acetyl-CoA carboxylase; Validated
Probab=100.00 E-value=0 Score=1221.37 Aligned_cols=442 Identities=49% Similarity=0.823 Sum_probs=432.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf 97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP 80 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP 80 (443)
||||||||||||||+||+||||||||+||+|||++|++|+|+++||++|++|+ .+.+||||+++||++|+++++|||||
T Consensus 1 M~~kvLIANRGEIA~Riirt~relgi~tVavys~~D~~s~hv~~Adea~~lg~-~~~~sYLn~~~Ii~~A~~~gadAiHP 79 (478)
T PRK08463 1 MIHKILIANRGEIAVRIIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGT-DPIKGYLDVKRIVEIAKACGADAIHP 79 (478)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHCCCCHHHHCCEEEECCC-CHHHHHCCHHHHHHHHHHHCCCEEEC
T ss_conf 97617896686999999999998399789997857657834775787665288-73453069999999999849999936
Q ss_pred CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC---CHHHHHHHHHCCCCHHHHHC
Q ss_conf 853131097666889845921626898999872189988776642244332433345---57999873200330122000
Q gi|254780268|r 81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV---YPHTAMPIAKEIGFPVLVKA 157 (443)
Q Consensus 81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~---~~~ea~~~a~~iGyPviiKp 157 (443)
||||||||++||++|+++|++||||++++|+.+|||..+|++|.++|||++||+... +.+++.++++++|||||+||
T Consensus 80 GYGFLSEna~FA~~~~~~Gi~FIGPs~~~i~~~GdK~~Ar~~a~~~gVPvvpg~~~~~~~~~~~~~~~a~~iGyPv~lKA 159 (478)
T PRK08463 80 GYGFLSENYEFAKAVEDAGLIFIGPKSEVIRKMGNKNIARKLMAKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKA 159 (478)
T ss_pred CCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 87623469999999997899899949999999864899999999839984667677887679999999986598047840
Q ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 23457821688875066899999875432125899816884434201103315777347870236566542113562255
Q gi|254780268|r 158 SAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIW 237 (443)
Q Consensus 158 ~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkii 237 (443)
++|||||||++|++++||.++|+++++||+++|||+.||+||||+++|||||||+||++||++||||||||+||||||+|
T Consensus 160 ~~GGGGrGmrvv~~~~el~~~~~~a~~ea~~~Fg~~~v~iEk~i~~~RHiEVQvlgD~~Gnvi~l~eRdCSiQRr~QKvi 239 (478)
T PRK08463 160 SGGGGGRGIRVVWKEEDLENAFESCKREAKAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVI 239 (478)
T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCEEE
T ss_conf 35999871178557899999999999999984699854788750245178999986179978896305134334675168
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 4034455889999999999999886515434102458972-883499822765433201678863256201123222102
Q gi|254780268|r 238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASEN 316 (443)
Q Consensus 238 EeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~ 316 (443)
||||||.|+++++++|.++|+++++++||+|+||||||+| +++||||||||||||||||||++||+|||++|+++|.|.
T Consensus 240 EeaPap~l~~~~r~~m~~~A~~la~~v~Y~~aGTvEFL~d~~~~fyFlEmNtRlQVEHpVTE~vTGvDLV~~Qi~iA~G~ 319 (478)
T PRK08463 240 EIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNNFYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIAAGE 319 (478)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCEECCCCHHHHHHHHHCCC
T ss_conf 96699987889999998899876663051665338988838997899960755455665411003886899999986799
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHH
Q ss_conf 2222113333201245330245662-211112442158866899844677760238770777684338999955998999
Q gi|254780268|r 317 RLSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKEC 395 (443)
Q Consensus 317 ~l~~~~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~A 395 (443)
+|++.|+++.++||||||||||||| ++|+||+|+|+.|.+|+|+|||+||+++.|++||++|||||||||+||+||++|
T Consensus 320 ~L~~~q~~i~~~GhAIE~RI~AEdp~~~F~Ps~G~i~~~~~p~g~gvRvDs~~~~G~~v~~~yDsmiaKlI~~g~~R~~A 399 (478)
T PRK08463 320 ILDLEQSDIKPRGFAIEARITAENVWKNFIPSPGKITGYYPALGPSVRVDSHIYKDYTIPPFYDSMLAKLIVKATSYDLA 399 (478)
T ss_pred CCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCHHHCEEEEECCCHHHH
T ss_conf 88854003466745999998514776674658748878972899998980886786980897570453488988999999
Q ss_pred HHHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHCCC
Q ss_conf 999998765408826377888999896898895588653168751069
Q gi|254780268|r 396 MMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKYLK 443 (443)
Q Consensus 396 i~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~~~ 443 (443)
++||.+||+++.|.||+||++||++||++|+|++|+++|+|||+|+.|
T Consensus 400 i~rl~~AL~e~~I~Gv~Tni~~l~~il~~~~F~~g~~~T~fle~~~~e 447 (478)
T PRK08463 400 VNKLERALKEFTIEGVRTTIPFLIAISKTREFRRGYFDTSYIETHMQE 447 (478)
T ss_pred HHHHHHHHHCCEEECCCCCHHHHHHHHCCCCEECCCCCCHHHHHHHHH
T ss_conf 999999972669989558599999986791422799621277640786
No 12
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=0 Score=1203.44 Aligned_cols=440 Identities=53% Similarity=0.894 Sum_probs=432.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf 97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP 80 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP 80 (443)
.|||||||||||||+||+|||||||++||+|||++|++++|+++||++++|++.++.+||||+++||++|+++++|||||
T Consensus 3 ~~kkvLIANRGEIA~Ri~ra~~elgi~tVavys~~D~~a~~v~~ad~~~~ig~~~~~~sYln~~~Ii~~a~~~~~dAihP 82 (446)
T PRK08462 3 ELKRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFP 82 (446)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEC
T ss_conf 78889998960999999999998299699993767716762875989898289984334148999999999959198986
Q ss_pred CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHCCCCHHHHHCC
Q ss_conf 8531310976668898459216268989998721899887766422443324333--45579998732003301220002
Q gi|254780268|r 81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG--EVYPHTAMPIAKEIGFPVLVKAS 158 (443)
Q Consensus 81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~--~~~~~ea~~~a~~iGyPviiKp~ 158 (443)
||||||||++||++|+++|++||||++++|+.+|||..+|++|+++|||++||+. ..+.+++.+++++|||||||||+
T Consensus 83 GyGfLSEn~~fa~~~~~~Gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvpg~~~~v~~~~ea~~~a~~iGyPV~lKas 162 (446)
T PRK08462 83 GYGFLSENQNFVEICSHHSIKFIGPSVEVMALMSDKSKAKQVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAA 162 (446)
T ss_pred CCHHHHHCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf 82055408799999997799898959999998409598999999859980678678779999999999972995687632
Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 34578216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r 159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238 (443)
Q Consensus 159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE 238 (443)
+|||||||++|++++||.++|+++.+||+++|||++||+||||+++|||||||++|++||++||+|||||+||||||+||
T Consensus 163 ~GGGGrGmriv~~~~el~~~~~~a~~ea~~~fg~~~v~vEk~i~~~rHIEvQvl~D~~Gn~ihl~eRdCSiQRr~QKviE 242 (446)
T PRK08462 163 AGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSMQRRHQKLIE 242 (446)
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCEEE
T ss_conf 78998742895767999999999987788605888669998503550789998852899888853212366346787589
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 034455889999999999999886515434102458972--883499822765433201678863256201123222102
Q gi|254780268|r 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE--NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASEN 316 (443)
Q Consensus 239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~--~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~ 316 (443)
|||||.|+++++++|.++|+++++++||+|+|||||++| +++||||||||||||||||||++||+|||++|+++|.|.
T Consensus 243 eaPa~~l~~~~r~~m~~~A~~la~~vgY~gaGTvEFl~d~~~~~fyFlE~NtRlQVEH~VTE~vtGiDLV~~Qi~iA~G~ 322 (446)
T PRK08462 243 ESPAVVLDEKTRERLLETAIKAAKAIGYVGAGTFEFLLDSNMKDFYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGE 322 (446)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEECCCCEECCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 78999899899999888999999864836543389998079971899974334210011112214877999999986799
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHH
Q ss_conf 22221133332012453302456622111124421588668998446777602387707776843389999559989999
Q gi|254780268|r 317 RLSVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECM 396 (443)
Q Consensus 317 ~l~~~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai 396 (443)
+| +.|+++.++|||||||||||||++|+|++|+|+.|++|+|+|||+||++++|+.||++|||||||||+||+||++|+
T Consensus 323 ~l-~~q~~i~~~GhaIe~Ri~AEdp~~F~Ps~G~i~~~~~P~g~gvRvDt~~~~G~~v~~~yDsmlaKlI~~g~~R~~Ai 401 (446)
T PRK08462 323 EL-PSQESIKLKGHAIECRITAEDPKKFYPSPGKITKWIAPGGRNVRMDSHAYAGYVVPPYYDSMIGKLIVWGEDRNRAI 401 (446)
T ss_pred CC-CCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCEECCCCCCHHHEEEEECCCHHHHH
T ss_conf 98-75666672643422342045877679987588789879999989638877859879765574135889899999999
Q ss_pred HHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHC
Q ss_conf 999987654088263778889998968988955886531687510
Q gi|254780268|r 397 MRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKY 441 (443)
Q Consensus 397 ~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~ 441 (443)
+||.+||+++.|.|++||++||++||++|+|++|+++|+|||+||
T Consensus 402 ~rl~~aL~e~~I~Gv~Tni~~l~~il~~~~F~~g~~~T~~l~~~~ 446 (446)
T PRK08462 402 AKMKRALDEFKVEGIKTTIPFHLEMMENADFINNKYDTKYLEEHF 446 (446)
T ss_pred HHHHHHHHCCEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHC
T ss_conf 999999844599893284999999857820107995211203229
No 13
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=0 Score=1204.10 Aligned_cols=441 Identities=51% Similarity=0.874 Sum_probs=433.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf 70686644709999999988880965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r 2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG 81 (443)
Q Consensus 2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG 81 (443)
|||||||||||||+||+||||||||+||+|||++|++++|+++||++|+|++....+||||+++||++|+++++||||||
T Consensus 5 ikkvLIANRGEIA~Riirt~relgi~tVavys~~D~~~~hv~~ADeav~ig~~~~~~sYln~~~Ii~~A~~~g~dAiHPG 84 (458)
T PRK12833 5 IRTVLVANRGEIAVRVIRAAHELGMRAVAVVSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIHPG 84 (458)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEECC
T ss_conf 87899977869999999999983998999918576558358749999982898700132699999999998299999768
Q ss_pred CCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 531310976668898459216268989998721899887766422443324333--455799987320033012200023
Q gi|254780268|r 82 YGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG--EVYPHTAMPIAKEIGFPVLVKASA 159 (443)
Q Consensus 82 yGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~--~~~~~ea~~~a~~iGyPviiKp~~ 159 (443)
|||||||++||++|+++||+||||++++|+.+|||..+|++|+++|||++||+. ..+.+++.+++++||||+||||++
T Consensus 85 YGFLSEna~FA~~~~~~gi~fIGPs~~~i~~~GdK~~ar~~a~~~gvPvvpgs~~~v~~~~ea~~~a~~iGyPv~iKAs~ 164 (458)
T PRK12833 85 YGFLSENAAFAAQVEAAGLIFVGPDAQVIATMGDKARARETARRAGVPTVPGSDGVVASLDAALEVAARIGYPVMIKAAA 164 (458)
T ss_pred CCHHHHCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHCC
T ss_conf 66255299999999978998999499999985096999999998499966896676677999999998659754213325
Q ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 45782168887506689999987543212589981688443420110331577734787023656654211356225540
Q gi|254780268|r 160 GGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEE 239 (443)
Q Consensus 160 gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEe 239 (443)
|||||||++|++++||.++|+.|++|++++|||+.||+||||+++|||||||++|++ |++||+|||||+||||||+|||
T Consensus 165 GGGGrGmriv~~~~el~~~~~~a~~ea~~~Fg~~~v~iEk~i~~~RHIEVQvl~D~~-~~vhl~eRdCSiQRr~QKviEe 243 (458)
T PRK12833 165 GGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-NVVHLFERECSLQRRRQKILEE 243 (458)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEECCC-CEEEEEECCCCCCCCCCCEEEE
T ss_conf 899871079526411489999999999972699764787613675079999985478-7699850256565677755887
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 34455889999999999999886515434102458972--8834998227654332016788632562011232221022
Q gi|254780268|r 240 AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE--NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENR 317 (443)
Q Consensus 240 aPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~--~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~ 317 (443)
||||.|+++++++|.++|+++++++||+|+||||||+| +++||||||||||||||||||++||+|||++|+++|.|.+
T Consensus 244 aPsp~l~~~~r~~l~~~a~~la~~v~y~gagTvEFl~d~~~~~fyFlEvNtRlQVEH~VTE~vtGiDLV~~Qi~iA~G~~ 323 (458)
T PRK12833 244 APSPSLTPAQRDALCASATRLARAVGYRGAGTLEYLFDDARGEFYFIEMNTRIQVEHPVTEAITGIDLVREMLRIADGEP 323 (458)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEHHHCCCCHHHHHHHHHCCCC
T ss_conf 79997899999999889999988533100002666786588968999621364444421223318859999999977997
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHH
Q ss_conf 222113333201245330245662-2111124421588668998446777602387707776843389999559989999
Q gi|254780268|r 318 LSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECM 396 (443)
Q Consensus 318 l~~~~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai 396 (443)
|++.|+++.++||||||||||||| ++|+|++|+|+.|++|+|+|||+||+++.|++||++|||||||+|+||+||++|+
T Consensus 324 L~~~q~~i~~~GhaIe~RI~AEdp~~~f~Ps~G~i~~~~~P~g~gvRvDt~v~~G~~v~~~yDsllaKlI~~g~~R~~Ai 403 (458)
T PRK12833 324 LRFAQGDIALRGAALECRINAEDPLQDFRPNPGRIDALVWPAGPGVRVDSLLYPGYAVPPFYDSLLAKLIVHDESRAAAL 403 (458)
T ss_pred CCCCHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCHHHEEEEECCCHHHHH
T ss_conf 78642106667508999752258877867688385268639999888888702779748875504300368889999999
Q ss_pred HHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHCCC
Q ss_conf 99998765408826377888999896898895588653168751069
Q gi|254780268|r 397 MRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKYLK 443 (443)
Q Consensus 397 ~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~~~ 443 (443)
+||.+||+++.|.|++||++||++||+||+|++|+++|+|||++++|
T Consensus 404 ~rl~~aL~e~~I~Gv~TNi~~l~~il~~~~F~~g~~~T~fle~~~~e 450 (458)
T PRK12833 404 ARAARALEELRIDGMKTTAPLHRALLADADVRAGRYHTNFLEAWMAE 450 (458)
T ss_pred HHHHHHHHCCEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999984479989338799999986790011799760788866686
No 14
>KOG0238 consensus
Probab=100.00 E-value=0 Score=1167.79 Aligned_cols=439 Identities=51% Similarity=0.888 Sum_probs=431.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCH
Q ss_conf 86644709999999988880965999858557718776758579991899853000698999999987099899458531
Q gi|254780268|r 5 ILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGF 84 (443)
Q Consensus 5 iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGf 84 (443)
||||||||||||+|||||+|||+||+|||++|++|+|+.+|||+|||++++...|||+.+.||++|++++++||||||||
T Consensus 1 iLiANRGEIAcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGF 80 (670)
T KOG0238 1 ILIANRGEIACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGF 80 (670)
T ss_pred CEECCCCCEEEHHHHHHHHHCCEEEEEECCCCCCCCEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCC
T ss_conf 92224660651156679972975899971576343200004510342887344434137899999986288462178553
Q ss_pred HHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC--CCHHHHHHHHHCCCCHHHHHCCCCCC
Q ss_conf 3109766688984592162689899987218998877664224433243334--55799987320033012200023457
Q gi|254780268|r 85 LSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE--VYPHTAMPIAKEIGFPVLVKASAGGG 162 (443)
Q Consensus 85 LsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~--~~~~ea~~~a~~iGyPviiKp~~gGG 162 (443)
||||++||+.|+++|++||||++++|+.||||..+|++|+++|||++||+.. .+.+++...+++|||||||||++|||
T Consensus 81 LSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGG 160 (670)
T KOG0238 81 LSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGG 160 (670)
T ss_pred CCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 23553899999876986879887998873125778999986499613685643266799999998619857999515788
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 82168887506689999987543212589981688443420110331577734787023656654211356225540344
Q gi|254780268|r 163 GRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHS 242 (443)
Q Consensus 163 G~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEeaPa 242 (443)
|||||++++++|+.+.|+.+++||.++|||+.+|+||||++||||||||+||++||++||+|||||+||||||+||||||
T Consensus 161 GkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSvQRRnQKiiEEaPa 240 (670)
T KOG0238 161 GKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSVQRRNQKIIEEAPA 240 (670)
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 76317514868899999988888876318641107776368754899997347776888504544242321156630899
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCC
Q ss_conf 55889999999999999886515434102458972-88349982276543320167886325620112322210222221
Q gi|254780268|r 243 PVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRLSVQ 321 (443)
Q Consensus 243 p~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l~~~ 321 (443)
|+|++++|.+|.++|+++++++||.|+|||||++| .++||||||||||||||||||++||+|||+||||+|.|+||+++
T Consensus 241 p~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQVEHPvTEmItg~DLVewqiRvA~ge~lp~~ 320 (670)
T KOG0238 241 PNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQVEHPVTEMITGTDLVEWQIRVAAGEPLPLK 320 (670)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECEEEECCCCHHHCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 99998999999999999988638764444999983788579998402253036416321222789999998649999977
Q ss_pred CCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCC-CCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf 13333201245330245662-21111244215886689-98446777602387707776843389999559989999999
Q gi|254780268|r 322 QKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPG-GLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRL 399 (443)
Q Consensus 322 ~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~-~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l 399 (443)
|.+|+.+|||+||||||||| .+|+|++|+|..|.+|. +++||+|||+++|++||++|||||||||+||+||++|+.||
T Consensus 321 q~ei~l~GhafE~RiyAEdp~~~f~P~~G~L~~~~~p~~~~~vRvdtgV~~g~~vs~~YDpmiaKlvvwg~dR~~Al~kl 400 (670)
T KOG0238 321 QEEIPLNGHAFEARIYAEDPYKGFLPSAGRLVYYSFPGHSPGVRVDTGVRSGDEVSIHYDPMIAKLVVWGKDREEALNKL 400 (670)
T ss_pred CCEEEECCEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCHHEEEEEECCCHHHHHHHH
T ss_conf 02013645478999850077546777874111202678899725555730287446113650015667648789999999
Q ss_pred HHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHCCC
Q ss_conf 98765408826377888999896898895588653168751069
Q gi|254780268|r 400 NRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKYLK 443 (443)
Q Consensus 400 ~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~~~ 443 (443)
..||++++|.|++|||+||+.|+.+|+|..|+++|.||++|+.+
T Consensus 401 ~~aL~~~~I~Gv~tnI~~l~~i~~~~~F~~g~V~T~fi~~~~~e 444 (670)
T KOG0238 401 KDALDNYVIRGVPTNIDFLRDIISHPEFAKGNVSTKFIPEHQPE 444 (670)
T ss_pred HHHHHHCEEECCCCCHHHHHHHHCCHHHHCCCCCCCCCHHCCCC
T ss_conf 99986068846756668999875476663276301534010744
No 15
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=0 Score=1113.05 Aligned_cols=440 Identities=50% Similarity=0.845 Sum_probs=426.6
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCC-CCCHHCCHHHHHHHHHHCCCCEEE
Q ss_conf 9706866447099999999888809659998585577187767585799918998-530006989999999870998994
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPS-SKDSYLNIQQIVAACEVTGADAIH 79 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~-~~~sYldi~~ii~~a~~~~~daih 79 (443)
+|||||||||||||+|+.|||.|||++||+||+..|+.|.|...|||+|.+|.+. +.++|||||.||.+|+++|+||||
T Consensus 6 ~~~KvLVANRgEIAIRvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaIh 85 (1149)
T COG1038 6 KIKKVLVANRGEIAIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAIH 85 (1149)
T ss_pred HHHEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHCCCCCEEECCCCCCCHHHHCCHHHHHHHHHHCCCCEEC
T ss_conf 10202550453366999998886086489985144543044303551066067887268743299999999970887313
Q ss_pred CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC--CHHHHHHHHHCCCCHHHHHC
Q ss_conf 5853131097666889845921626898999872189988776642244332433345--57999873200330122000
Q gi|254780268|r 80 PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV--YPHTAMPIAKEIGFPVLVKA 157 (443)
Q Consensus 80 PGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~--~~~ea~~~a~~iGyPviiKp 157 (443)
|||||||||++||++|.++||+||||+++.++++|||.++|.++.++|||++|++..+ +.++++++++++|||+|||+
T Consensus 86 PGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmiKA 165 (1149)
T COG1038 86 PGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIKA 165 (1149)
T ss_pred CCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 78432447989999999759789688879998844288899999975998556999982129999999986698589997
Q ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 23457821688875066899999875432125899816884434201103315777347870236566542113562255
Q gi|254780268|r 158 SAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIW 237 (443)
Q Consensus 158 ~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkii 237 (443)
+.||||||||+|++++||.+++++|++||+++||++.|++||||++||||||||+||.+||++||+|||||+||||||+|
T Consensus 166 ~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRhQKVV 245 (1149)
T COG1038 166 AAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKVV 245 (1149)
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCEEEEEEEECCCCCEEEEEECCCCHHHCCCEEE
T ss_conf 14798665266258889999999988999974189806656552486526899860577878888623553310144037
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 4034455889999999999999886515434102458972-883499822765433201678863256201123222102
Q gi|254780268|r 238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASEN 316 (443)
Q Consensus 238 EeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~ 316 (443)
|.||||.|++++|++|+++|+|+++.+||.|+||||||+| +++|||||||||+||||+|||++||||+|+.||.||.|.
T Consensus 246 E~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~G~ 325 (1149)
T COG1038 246 EVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQVEHTITEEITGIDIVKAQIHIAAGA 325 (1149)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEEEEEECHHHHHHHHHHHCCC
T ss_conf 85688889999999999999999997397656647888738886899995473456776455441216788789885356
Q ss_pred CCC------CCCCCCCCCHHHHHHHCCCCCCC-CCCCCCCCEEEEECCCCCCEEEECC-CCCCCEECCCCCCCEEEEEEE
Q ss_conf 222------21133332012453302456622-1111244215886689984467776-023877077768433899995
Q gi|254780268|r 317 RLS------VQQKDITFSGHAIECRINAEDPE-NFIPNPGEITYFHAPGGLGIRMDSA-SYQGYTVPSYYDSLIAKLIVH 388 (443)
Q Consensus 317 ~l~------~~~~~i~~~g~aie~Ri~aEdp~-~f~Ps~G~i~~~~~p~~~gvRvDt~-~~~G~~i~~~yDsmlaKiI~~ 388 (443)
.|. .+|++|..+||||||||+.|||. ||+|.+|+|+.|+.++|.|||.|+| .+.|.+|+|||||||-|+.+|
T Consensus 326 ~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~n~F~PDtGrI~aYRs~gGfGVRLD~Gn~~~GavItpyyDslLVK~t~~ 405 (1149)
T COG1038 326 TLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGFIPDTGRITAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTCW 405 (1149)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCEECCCCCCCEEEEEEC
T ss_conf 56874459974444033643788774133745477888752788862787438745776656646314455414456324
Q ss_pred CCCHHHHHHHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHH
Q ss_conf 5998999999998765408826377888999896898895588653168751
Q gi|254780268|r 389 GKNRKECMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENK 440 (443)
Q Consensus 389 g~~R~~Ai~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~ 440 (443)
|.++++|++||.|+|.||+|+||+|||+||+++|+||.|++|+|+|+|||+.
T Consensus 406 ~~t~e~a~~km~RaL~EfrIrGVkTNi~FL~~vl~h~~F~~g~y~T~FId~t 457 (1149)
T COG1038 406 GSTFEEAIRKMIRALREFRIRGVKTNIPFLEAVLNHPDFRSGRYTTSFIDTT 457 (1149)
T ss_pred CCCHHHHHHHHHHHHHHHEECCEECCCHHHHHHHCCCCCCCCCCEEEECCCC
T ss_conf 8998999999999888845112132818999985595302686323340589
No 16
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=0 Score=1007.10 Aligned_cols=442 Identities=63% Similarity=1.058 Sum_probs=433.7
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf 97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP 80 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP 80 (443)
||+|||||||||||+|++|||++||++||+|||++|..+.|+.+|||+++++|.+..+||||++.++.+|++.++|||||
T Consensus 1 m~~kiLIanrGeia~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~p 80 (449)
T COG0439 1 MFKKILIANRGEIAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHP 80 (449)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEECC
T ss_conf 97369995585368999999998498589996610022525663756798388650345651888998998608766723
Q ss_pred CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC--CCHHHHHHHHHCCCCHHHHHCC
Q ss_conf 85313109766688984592162689899987218998877664224433243334--5579998732003301220002
Q gi|254780268|r 81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE--VYPHTAMPIAKEIGFPVLVKAS 158 (443)
Q Consensus 81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~--~~~~ea~~~a~~iGyPviiKp~ 158 (443)
||||||||+.|++.|+++|+.||||++++|+.||||+.+|++|+++|||++||+.. .+.+++.+.+++|||||||||+
T Consensus 81 Gygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~ 160 (449)
T COG0439 81 GYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAA 160 (449)
T ss_pred CCHHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 50342178899999997497510849899997445899999999749995899787768889999999871997899977
Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 34578216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r 159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238 (443)
Q Consensus 159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE 238 (443)
+||||+||++|++.+||.++|+.+++++..+|+++.|++||||+++||+|+||++|++||++|++|||||+||||||++|
T Consensus 161 ~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcsiqrr~qkvie 240 (449)
T COG0439 161 AGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVIE 240 (449)
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEE
T ss_conf 88996547997999999999999998888755897278634105884689999876866589998646687677661553
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 034455889999999999999886515434102458972-8834998227654332016788632562011232221022
Q gi|254780268|r 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENR 317 (443)
Q Consensus 239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~ 317 (443)
++|+|.++++.+.++...+.++++.+||.|+||+|||++ +++|||+||||||||||||||++||+|||++||++|+|++
T Consensus 241 eapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~~~yfiEmN~Rlqveh~vte~vtGiDlv~~qi~ia~ge~ 320 (449)
T COG0439 241 EAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIEMNTRLQVEHPVTEMVTGIDLVKEQIRIAAGEP 320 (449)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHCCCC
T ss_conf 05888899999999999999999863877775699998279987999986411367630100000428999999976998
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCC-CCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHH
Q ss_conf 2221133332012453302456622-111124421588668998446777602387707776843389999559989999
Q gi|254780268|r 318 LSVQQKDITFSGHAIECRINAEDPE-NFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECM 396 (443)
Q Consensus 318 l~~~~~~i~~~g~aie~Ri~aEdp~-~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai 396 (443)
+++.|+++.++|||+|||||+|||. ||.||+|+++.+.+|+++|||+|++.+.|+.+|++||||++|+|+||.+|.+|+
T Consensus 321 l~~~q~~~~~~g~aie~Ri~aedp~~~f~pspG~i~~~~~P~g~gvr~d~~~~~~~~i~~~yds~i~k~i~~~~~r~~ai 400 (449)
T COG0439 321 LSLKQEDIKFRGHAIECRINAEDPLGNFLPSPGKITRYAPPGGPGVRVDSGVYDGYRVPPYYDSMIGKVIVHGRTRDEAI 400 (449)
T ss_pred CCCCCCCCCCCCEEEECEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCHHHHEEEEEEECCCHHHHH
T ss_conf 88777775613313100010568887857899765014079988668873213585248641401368999648869999
Q ss_pred HHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHCC
Q ss_conf 9999876540882637788899989689889558865316875106
Q gi|254780268|r 397 MRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKYL 442 (443)
Q Consensus 397 ~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~~ 442 (443)
.+|.+||+++.|.|++||++|++.+++++.|.+|+++|+||+++..
T Consensus 401 ~~~~~aL~e~~i~G~~t~~~~~~~~~~~~~~~~g~~~t~~l~~~~~ 446 (449)
T COG0439 401 ARMRRALDELVIDGIKTNIPLLQEILRDPDFLAGDLDTHFLETHLE 446 (449)
T ss_pred HHHHHHHHHEEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHCCC
T ss_conf 9999878762744865786999988619476538766366531022
No 17
>KOG0369 consensus
Probab=100.00 E-value=0 Score=1018.27 Aligned_cols=439 Identities=47% Similarity=0.783 Sum_probs=427.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCC-CHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf 70686644709999999988880965999858557718776758579991899853-00069899999998709989945
Q gi|254780268|r 2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSK-DSYLNIQQIVAACEVTGADAIHP 80 (443)
Q Consensus 2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~-~sYldi~~ii~~a~~~~~daihP 80 (443)
.+|||||||||||+|+.|+|.||+++||+|||+.|+.++|...|||+|.+|.+.++ ..||.|+.||++|+++++|+|||
T Consensus 33 ~~kvlVANRgEIaIRvFRa~tEL~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHP 112 (1176)
T KOG0369 33 KNKVLVANRGEIAIRVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHP 112 (1176)
T ss_pred HCEEEEECCCCCHHHHHHHHHHHCCEEEEEEECCCHHHHHHHCCCHHEECCCCCCCHHHHHCHHHHHHHHHHCCCCEECC
T ss_conf 03478852762004788777762544799973111124656304301232677782676514799999998728873257
Q ss_pred CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC--CHHHHHHHHHCCCCHHHHHCC
Q ss_conf 853131097666889845921626898999872189988776642244332433345--579998732003301220002
Q gi|254780268|r 81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV--YPHTAMPIAKEIGFPVLVKAS 158 (443)
Q Consensus 81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~--~~~ea~~~a~~iGyPviiKp~ 158 (443)
||||||||++||++|.++|+.||||||++|+.||||..+|.++.++|||++||+..+ +.+|+.+|+++.|||+++|++
T Consensus 113 GYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAA 192 (1176)
T KOG0369 113 GYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAA 192 (1176)
T ss_pred CCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 74212212489999986596696889799988420888889999719971589999754299999999861983899610
Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 34578216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r 159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238 (443)
Q Consensus 159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE 238 (443)
+||||||||+|++.+|++++|++|.+||+++|||+.+|||||++.|||||||+++|.+||++||+|||||+||||||++|
T Consensus 193 yGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDCSvQRRHQKVVE 272 (1176)
T KOG0369 193 YGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSVQRRHQKVVE 272 (1176)
T ss_pred CCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCEEEEEEECCCCCCEEEEEECCCCHHHHHCCEEE
T ss_conf 16897643775025569999998889999861786153786625865268987213568789876145516432010367
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 034455889999999999999886515434102458972-8834998227654332016788632562011232221022
Q gi|254780268|r 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENR 317 (443)
Q Consensus 239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~ 317 (443)
+|||+.|++++|++|.+.|+|+++.+||.++||+|||+| .|++||+||||||||||+|||++||||||+.||++|.|.+
T Consensus 273 iAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~vAeG~t 352 (1176)
T KOG0369 273 IAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIHVAEGAS 352 (1176)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEEEEECCCCHHHHHHHHHCCCC
T ss_conf 34556599899999999999999984756577078877167978999954643566552310045201011113431787
Q ss_pred C---CCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECC-CCCCCEECCCCCCCEEEEEEECCCH
Q ss_conf 2---22113333201245330245662-21111244215886689984467776-0238770777684338999955998
Q gi|254780268|r 318 L---SVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSA-SYQGYTVPSYYDSLIAKLIVHGKNR 392 (443)
Q Consensus 318 l---~~~~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~-~~~G~~i~~~yDsmlaKiI~~g~~R 392 (443)
| .+.|+.|..+|+|||||++.||| ++|.|.+|+|+.|+.-+|.|||.|++ .+.|..|||+||||+.|+|++|.+.
T Consensus 353 Lp~lgl~QdkI~trG~aIQCRvTTEDPa~~FqPdtGriEVfRSgeGmGiRLD~asafaGavIsPhYDSllVK~i~h~~~~ 432 (1176)
T KOG0369 353 LPDLGLTQDKITTRGFAIQCRVTTEDPAKGFQPDTGRIEVFRSGEGMGIRLDGASAFAGAVISPHYDSLLVKVICHGSTY 432 (1176)
T ss_pred CCCCCCCCCCEEECCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCC
T ss_conf 53235430203204337998872358554689987507999707874476247543566411655553278898538865
Q ss_pred HHHHHHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHH
Q ss_conf 999999998765408826377888999896898895588653168751
Q gi|254780268|r 393 KECMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENK 440 (443)
Q Consensus 393 ~~Ai~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~ 440 (443)
+.+.+||.|||.||+|+||+||||||.++|.+|.|++|.++|.|||++
T Consensus 433 ~~~a~KMiRaL~eFRiRGVKTNIpFllnvL~n~~Fl~g~~~T~FIDe~ 480 (1176)
T KOG0369 433 EIAARKMIRALIEFRIRGVKTNIPFLLNVLTNPVFLEGTVDTTFIDET 480 (1176)
T ss_pred HHHHHHHHHHHHHHHHCCEECCCHHHHHHHCCCHHEEEEEEEEEECCC
T ss_conf 678999999999872203202747999986474101001124772488
No 18
>KOG0368 consensus
Probab=100.00 E-value=0 Score=817.04 Aligned_cols=439 Identities=34% Similarity=0.587 Sum_probs=416.6
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHC---------CCEEEEECCCHH--HCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHH
Q ss_conf 970686644709999999988880---------965999858557--718776758579991899853000698999999
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKEL---------GIPTVAVHSTAD--SGAMHVRLADESVCIGPPSSKDSYLNIQQIVAA 69 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~el---------Gi~tv~v~s~~D--~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~ 69 (443)
.|+||||||.|-.|++.+|+.|.+ -|+.|++.|++| .+|.+.++||+.+..|++++...|.|+|.|+++
T Consensus 53 vI~kILIAnNGiAAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrmADqyvevPgGtNnNNyANVdlIvdi 132 (2196)
T KOG0368 53 VIKRILIANNGIAAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRMADQYVEVPGGTNNNNYANVDLIVDI 132 (2196)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHH
T ss_conf 36788870565889999999999999973876608999966878887668886310114337888887773018999988
Q ss_pred HHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC-------------
Q ss_conf 9870998994585313109766688984592162689899987218998877664224433243334-------------
Q gi|254780268|r 70 CEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE------------- 136 (443)
Q Consensus 70 a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~------------- 136 (443)
|++..+||||+|||..|||+++.+.+.+.||.||||+.++|..+|||+.+--+|+.+||||+||++.
T Consensus 133 Ae~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~~ 212 (2196)
T KOG0368 133 AERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNL 212 (2196)
T ss_pred HHHCCCCEEEECCCCCCCCCCHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCE
T ss_conf 87435535761555445684257889767928988946777763216877898875499721446886314455056762
Q ss_pred -------------CCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf -------------5579998732003301220002345782168887506689999987543212589981688443420
Q gi|254780268|r 137 -------------VYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLEN 203 (443)
Q Consensus 137 -------------~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~ 203 (443)
.+.+|.++.+++||||+||||+-||||||+|.|++.||+...|+++..|- +.+++|+.|...+
T Consensus 213 v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~Ev----PGSPIFlMK~a~~ 288 (2196)
T KOG0368 213 VSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNEV----PGSPIFLMKLADQ 288 (2196)
T ss_pred EECCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHC----CCCCEEHHHHCCC
T ss_conf 735789865343088889999998629836999545789766130456678999999998558----9995552003367
Q ss_pred EEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--CCCCE
Q ss_conf 1103315777347870236566542113562255403445588999999999999988651543410245897--28834
Q gi|254780268|r 204 PRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY--ENGQF 281 (443)
Q Consensus 204 ~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~--~~~~~ 281 (443)
+||+|||+|+|.|||++.|+.|||||||||||||||||+.-.+.++.++|.++|+++++-+||.++||||||+ ++|+|
T Consensus 289 ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~~f 368 (2196)
T KOG0368 289 ARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDGEY 368 (2196)
T ss_pred CCEEEEEHHHHHHCCEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEECCEEEEEEECCCCCE
T ss_conf 54021002245308787774366237787778876188541788999999999999987636111336899972589817
Q ss_pred EEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCC---------------------CCCCCCCHHHHHHHCCCCC
Q ss_conf 9982276543320167886325620112322210222221---------------------1333320124533024566
Q gi|254780268|r 282 YFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRLSVQ---------------------QKDITFSGHAIECRINAED 340 (443)
Q Consensus 282 yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l~~~---------------------~~~i~~~g~aie~Ri~aEd 340 (443)
||||.|||||||||.||++.||+|..+|+.||.|.||.-. +.-+.++||.|.|||++||
T Consensus 369 yFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~GdS~idfe~~~~p~pkgHciA~RITsEd 448 (2196)
T KOG0368 369 YFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTGDSPIDFENAKLPCPKGHCIAARITSED 448 (2196)
T ss_pred EEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEECCC
T ss_conf 99962763024677525551578608999998598510054889970899999998771111378998418999863158
Q ss_pred C-CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECC-CCCCHHHH
Q ss_conf 2-211112442158866899844677760238770777684338999955998999999998765408826-37788899
Q gi|254780268|r 341 P-ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDG-IKTTIPLF 418 (443)
Q Consensus 341 p-~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~G-v~TN~~~l 418 (443)
| ++|.||+|++..+.+++.++|+-..++..|..|..|.||.++++.+||.+|++|++.|.-||+++.|+| ++|+++||
T Consensus 449 PddgFkPSsG~v~eLnFrSssnvWgYFSV~~~g~iHeFadSQFGHiFa~Ge~R~eAi~nMv~aLKelsIRgdFrT~VeYL 528 (2196)
T KOG0368 449 PDDGFKPSSGTVQELNFRSSSNVWGYFSVGNGGGIHEFADSQFGHIFAFGESRQEAIANMVVALKELSIRGDFRTTVEYL 528 (2196)
T ss_pred CCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCEECCCCCCCEEEEECCCHHHHHHHHHHHHHHCEECCCCCCHHHHH
T ss_conf 88775889870688414777771489994379850242433340146625768999999999887615146677628999
Q ss_pred HHHHCCHHHHCCCCCHHHHHHHCCC
Q ss_conf 9896898895588653168751069
Q gi|254780268|r 419 QKLIKNEDIIEGNYDIHWLENKYLK 443 (443)
Q Consensus 419 ~~il~~~~f~~g~~~T~fi~~~~~~ 443 (443)
+.+|.+.+|.++.++|.|||..+++
T Consensus 529 I~LLet~dF~~N~i~TgWLD~~Ia~ 553 (2196)
T KOG0368 529 IDLLETEDFESNKIDTGWLDKRIAM 553 (2196)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9987765533146750468999998
No 19
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=100.00 E-value=0 Score=534.10 Aligned_cols=373 Identities=23% Similarity=0.327 Sum_probs=341.6
Q ss_pred CEEEEEECCCHHHH-----------HHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHH
Q ss_conf 70686644709999-----------9999888809659998585577187767585799918998530006989999999
Q gi|254780268|r 2 ISKILIANRGEIAL-----------RILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAAC 70 (443)
Q Consensus 2 ~~~iLianrGeia~-----------riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a 70 (443)
||||||.+.|+|-+ ..++|+||.||+||+|||||.+.+++-.+||+.|.+| |..+.|-+|.
T Consensus 6 i~kvLviGSGPi~IGQAaEFDYSGsQAcKALkEEGy~viLVNsNpATimTD~~~AD~vY~eP--------lT~e~V~~II 77 (1089)
T TIGR01369 6 IKKVLVIGSGPIVIGQAAEFDYSGSQACKALKEEGYEVILVNSNPATIMTDPEMADKVYIEP--------LTPEAVEKII 77 (1089)
T ss_pred CCEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHCCCCCCCC--------CCHHHHHHHH
T ss_conf 87899966673113120230247899999987649579997588472338866866002525--------4588886665
Q ss_pred HHCCCCEEEC---CCCHHHCCHHHH--HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 8709989945---853131097666--88984592162689899987218998877664224433243334557999873
Q gi|254780268|r 71 EVTGADAIHP---GYGFLSENAKFA--EILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPI 145 (443)
Q Consensus 71 ~~~~~daihP---GyGfLsEn~~fa--~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~ 145 (443)
++..+|||.| |++.|+..-+|- ..|++.|+..||.+.++|...+||..||.+|.+.|+|||++..+.+.+||+++
T Consensus 78 EKERPDgiL~t~GGQTALNlav~L~~~GVL~kYgV~vLGT~~eaI~kaEDRe~F~~~M~ei~~pvp~S~~~~~~eEA~~~ 157 (1089)
T TIGR01369 78 EKERPDGILPTLGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPKSEIVHSVEEALKA 157 (1089)
T ss_pred HHCCCCCHHCCCCCHHHHHHHHHHHHCCCCHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 31686600025760357777886620685145291785234243520202799999999738998811002788999999
Q ss_pred HHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf 20033012200023457821688875066899999875432125899816884434201103315777347870236566
Q gi|254780268|r 146 AKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGER 225 (443)
Q Consensus 146 a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~er 225 (443)
|+++||||||+|++..||.|-.+|+|.+||.+..+.+.+.|. =++|||||.|.||+|||..|+||.+|||+.+
T Consensus 158 a~~~GyPviVRpAftLGG~GgGiA~n~eEL~~~~~~aL~~Sp----I~qvL~EkSl~GWKE~EYEVmRD~~dNCItV--- 230 (1089)
T TIGR01369 158 AKEIGYPVIVRPAFTLGGTGGGIASNEEELKEIVERALSASP----INQVLVEKSLAGWKEIEYEVMRDSKDNCITV--- 230 (1089)
T ss_pred HHHCCCCEEECCCHHCCCCCCCEECCHHHHHHHHHHHHHHCC----CCEEEEEEECCCCEEEEEEEEEECCCCEEEE---
T ss_conf 962689689810032388998522577899999998863088----8557501100331788988986268788999---
Q ss_pred CCCCCCCCCEEEE------ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CEEEEEEC--CCCEEEEECCCCCCCCCHH
Q ss_conf 5421135622554------0344558899999999999998865154341-02458972--8834998227654332016
Q gi|254780268|r 226 DCSVQRRNQKIWE------EAHSPVISAQDRTEIGETCVKAMKKIDYRGA-GTIEFLYE--NGQFYFIEMNTRLQVEHPV 296 (443)
Q Consensus 226 dCSiQrr~qkiiE------eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~-~tvEFl~~--~~~~yflEvN~Rlqveh~v 296 (443)
|++++-++..|| .|||++||+...|.|+++|+|+.|++|..|- +||||.+| ++++|+||||||+||+.+.
T Consensus 231 -CNmEN~DPmGVHTGdSIVVAPSQTLtD~EYQ~LR~~sikIIR~lGi~GgGCNvQFAL~P~s~~Y~vIEvNPRvSRSSAL 309 (1089)
T TIGR01369 231 -CNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIVGGGCNVQFALDPDSGRYYVIEVNPRVSRSSAL 309 (1089)
T ss_pred -ECCCCCCCCCEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCEEEEECCCCCCEEEEEECCCCCHHHHH
T ss_conf -7454768984570783365076368807899999999999987391216742132150789706999867882135898
Q ss_pred HHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCE--EEEECCCCCCEEEECCCCCCCEE
Q ss_conf 7886325620112322210222221133332012453302456622111124421--58866899844677760238770
Q gi|254780268|r 297 TEAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEI--TYFHAPGGLGIRMDSASYQGYTV 374 (443)
Q Consensus 297 te~~tgvdlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i--~~~~~p~~~gvRvDt~~~~G~~i 374 (443)
.+|+||+||.+.+.+||+|.+|+..+++|+-+. |..|.||-.-| +-.|||=+.--.+|..+.+
T Consensus 310 ASKATGYPiAkvAAKLAvGY~LdEl~N~vT~~T-----------~A~FEPSLDYvVvKIPRW~f~KF~~v~r~LGt---- 374 (1089)
T TIGR01369 310 ASKATGYPIAKVAAKLAVGYGLDELKNPVTKTT-----------PASFEPSLDYVVVKIPRWDFDKFEGVDRKLGT---- 374 (1089)
T ss_pred HHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCC-----------CCCCCCCCCEEEECCCCCCCHHHCCCCCCCCC----
T ss_conf 766516628999999846887876568888853-----------54104674808860678872210578854152----
Q ss_pred CCCCCCC--EEEEEEECCCHHHHHHHHHHHHHHCEECCC
Q ss_conf 7776843--389999559989999999987654088263
Q gi|254780268|r 375 PSYYDSL--IAKLIVHGKNRKECMMRLNRALNEIIIDGI 411 (443)
Q Consensus 375 ~~~yDsm--laKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv 411 (443)
.| +|.||+.|+|++||++|+.|.|+. ...|+
T Consensus 375 -----~MKSvGEVMAIGRtFEEALQKA~Rsle~-~~~Gf 407 (1089)
T TIGR01369 375 -----QMKSVGEVMAIGRTFEEALQKALRSLEI-GLLGF 407 (1089)
T ss_pred -----EEEEEEEEECCCCCHHHHHHHHHHHHCC-CCCCC
T ss_conf -----1015777734671389999898876537-84113
No 20
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=100.00 E-value=0 Score=450.68 Aligned_cols=370 Identities=23% Similarity=0.340 Sum_probs=312.1
Q ss_pred EEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHH
Q ss_conf 06866447099-----------9999998888096599985855771877675857999189985300069899999998
Q gi|254780268|r 3 SKILIANRGEI-----------ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACE 71 (443)
Q Consensus 3 ~~iLianrGei-----------a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~ 71 (443)
|||||.+.|++ +|..++|+|++|++||+||+||++.|++...||.+|+-| |-.|.++++.+
T Consensus 574 k~~lvlGSGp~RIGqgvEFDYc~Vh~~~aLr~~Gye~ImiN~NPETVSTDyD~sDrLYFEp--------lt~E~Vm~I~e 645 (1089)
T TIGR01369 574 KKVLVLGSGPNRIGQGVEFDYCCVHAVLALREAGYETIMINYNPETVSTDYDTSDRLYFEP--------LTFEDVMNIIE 645 (1089)
T ss_pred CEEEEECCCCEECCCCEEEHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHCCCCC--------CCCCCCEEHEE
T ss_conf 5689987845140663120567899999998729959999778997436666510115876--------35031001100
Q ss_pred HCCCCEE---ECCCCHHHCCHHHHHHHHHCC-CEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 7099899---458531310976668898459-216268989998721899887766422443324333455799987320
Q gi|254780268|r 72 VTGADAI---HPGYGFLSENAKFAEILEDHH-IKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAK 147 (443)
Q Consensus 72 ~~~~dai---hPGyGfLsEn~~fa~~~e~~G-i~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~ 147 (443)
..++++| +.|+..+ .+|+.++++| ++.+|+|+++|+.++||.+|.++++++|||+|+|....+.+++.++|+
T Consensus 646 ~E~~~GVIVq~GGQtp~----nlA~~L~~~GG~~iLGTS~~~ID~AEDR~kFs~~l~~Lgi~QP~~~~a~s~eea~~~A~ 721 (1089)
T TIGR01369 646 LEKPEGVIVQFGGQTPL----NLAKELEEAGGVPILGTSPESIDRAEDREKFSELLDELGIPQPEWKIATSVEEAKEFAS 721 (1089)
T ss_pred ECCCCEEEEECCCHHHH----HHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHH
T ss_conf 05866799974873267----89999997089317368857875131867999999715879898852728799999985
Q ss_pred CCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCC--------
Q ss_conf 033012200023457821688875066899999875432125899816884434201103315777347870--------
Q gi|254780268|r 148 EIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNA-------- 219 (443)
Q Consensus 148 ~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~-------- 219 (443)
+|||||+|+|||..||++|.||+|.+||...++.|..-|. ..||+|.|||+++.|+||+.++||. ++
T Consensus 722 ~iGYPvlvRPSYVLgG~aM~iv~~~eeL~~yl~~a~~~S~----~~PVlidky~e~A~E~dVD~v~Dg~-~v~i~gI~EH 796 (1089)
T TIGR01369 722 EIGYPVLVRPSYVLGGRAMEIVYNEEELARYLEEAVEVSP----EHPVLIDKYLEDAVEIDVDAVSDGE-EVLIPGIMEH 796 (1089)
T ss_pred HCCCCEEECCCCCCCCCCHHEECCHHHHHHHHHHHHHHCC----CCCEEEEEECCCCEEEEEEEEEECC-EEEEEEHHHH
T ss_conf 4699289816830033621002678899999999997208----9976988852888899998997288-4899623123
Q ss_pred -----CCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-CCEEEEECCCCCCCC
Q ss_conf -----23656654211356225540344558899999999999998865154341024589728-834998227654332
Q gi|254780268|r 220 -----IHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYEN-GQFYFIEMNTRLQVE 293 (443)
Q Consensus 220 -----v~l~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~-~~~yflEvN~Rlqve 293 (443)
||-|+--|++ |++.|+++..++|.+++.+++++|+++|+.||||++++ |++|+||+|||.||+
T Consensus 797 iE~AGVHSGDs~~~~-----------Pp~~L~~~~~~~i~~~~~~iA~~L~v~Gl~NiQf~~~~E~~~yVIE~NpRASRt 865 (1089)
T TIGR01369 797 IEEAGVHSGDSTCVL-----------PPQTLSEDIVKRIKDIVRKIAKELNVKGLFNIQFVVKDEGEVYVIEVNPRASRT 865 (1089)
T ss_pred HHHCCCCCCCHHHCC-----------CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEECCCCCCC
T ss_conf 421367613053117-----------697778899999999999999870660722245556169967999971742066
Q ss_pred CHHHHHHHCCCCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEECC
Q ss_conf 016788632562011232221022222113------33320124533024566221111244215886689984467776
Q gi|254780268|r 294 HPVTEAITGIDLVHEQIYVASENRLSVQQK------DITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGLGIRMDSA 367 (443)
Q Consensus 294 h~vte~~tgvdlv~~~~~~a~g~~l~~~~~------~i~~~g~aie~Ri~aEdp~~f~Ps~G~i~~~~~p~~~gvRvDt~ 367 (443)
.|+.+|+|||||++.++++.+|.+|..... +..++.+++ |...|.|-.-+|+=+-=|
T Consensus 866 VPFvSKa~Gipl~~~A~~~~~G~~l~~~~~~~gv~~~~~~~~vav-----------------K~~vFSF~kL~g~Dp~LG 928 (1089)
T TIGR01369 866 VPFVSKATGIPLAKLAVRVMLGKKLEELGKDLGVGKEKESKYVAV-----------------KVPVFSFSKLAGVDPVLG 928 (1089)
T ss_pred CCCEEEECCCCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCEEEE-----------------EEEECCCHHHCCCCEEEC
T ss_conf 541321037887999999970882010275401123268872799-----------------642377122148871117
Q ss_pred CCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCE--------ECCCCCCHHHHHHHHCCHHHHC
Q ss_conf 0238770777684338999955998999999998765408--------8263778889998968988955
Q gi|254780268|r 368 SYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEII--------IDGIKTTIPLFQKLIKNEDIIE 429 (443)
Q Consensus 368 ~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~--------I~Gv~TN~~~l~~il~~~~f~~ 429 (443)
.+ ..+ -|.+++.|.|+.+|+.|...+=. +. +.+-..+.+-+..+.+ .|.+
T Consensus 929 pE----MkS-----TGEvmg~g~d~~~A~~Ka~~~~~-~~~p~kg~~~~~~~d~dk~~~~~~a~--~L~~ 986 (1089)
T TIGR01369 929 PE----MKS-----TGEVMGIGRDLEEAFLKAMLSSG-NRIPKKGSVLLSVRDKDKEELLDLAK--KLAE 986 (1089)
T ss_pred CC----CCC-----CCEEEEECCCHHHHHHHHHHHCC-CCCCCCCEEEEEECCCCHHHHHHHHH--HHHH
T ss_conf 75----551-----32256412788999999999818-70578877999803443457999999--9986
No 21
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=0 Score=432.60 Aligned_cols=388 Identities=21% Similarity=0.277 Sum_probs=326.8
Q ss_pred CEEEEEECCCHHH-----------HHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHH
Q ss_conf 7068664470999-----------99999888809659998585577187767585799918998530006989999999
Q gi|254780268|r 2 ISKILIANRGEIA-----------LRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAAC 70 (443)
Q Consensus 2 ~~~iLianrGeia-----------~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a 70 (443)
||||||.+.|+|- ..+++++||.||++|+||+||.+.+++..+||..|..| |..+.+.++.
T Consensus 7 ikkvLiiGsGpi~IGqa~EfDysg~qA~~aLkeeG~~vvlvN~NPaTi~TD~~~ad~vY~eP--------lt~e~v~~Ii 78 (1068)
T PRK12815 7 IKKILVIGSGPIIIGQAAEFDYSGTQACKALKEEGYQVVLVNPNPATIMTDPEPADTVYFEP--------LTLEFVKRII 78 (1068)
T ss_pred CCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCEEEECC--------CCHHHHHHHH
T ss_conf 88899989881531234465656999999999869989998898326208987444378858--------9899999999
Q ss_pred HHCCCCEEECCCC---HHHCCHHHHH--HHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 8709989945853---1310976668--8984592162689899987218998877664224433243334557999873
Q gi|254780268|r 71 EVTGADAIHPGYG---FLSENAKFAE--ILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPI 145 (443)
Q Consensus 71 ~~~~~daihPGyG---fLsEn~~fa~--~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~ 145 (443)
++.++|||.|.+| .|+-..++.+ .+++.|+..+|.++++|+..+|+..|+++|.+.|+|++++..+.+.+++.++
T Consensus 79 ~~E~Pd~il~~~GGqtaLnla~~L~~~GiL~k~~v~llGt~~~~I~~aedR~~f~~~m~~ig~~~~~s~~~~s~~ea~~~ 158 (1068)
T PRK12815 79 RREKPDALLATLGGQTALNLAVKLLEAGILEQYGVELLGTNVEAIQKGEDRERFRALMKELGEPVPESEIVDSEEEALRF 158 (1068)
T ss_pred HHHCCCEEEECCCCHHHHHHHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHH
T ss_conf 97499989867778479999999997597786596496799999986459999999999769999970521999999999
Q ss_pred HHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf 20033012200023457821688875066899999875432125899816884434201103315777347870236566
Q gi|254780268|r 146 AKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGER 225 (443)
Q Consensus 146 a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~er 225 (443)
++++||||+|+|++..||+|+.+|+|++||.+.++.+...+. .++|+||++|.||+|+|+.|++|+.||++.+
T Consensus 159 a~~ig~PvivRps~~lGg~g~~i~~n~~eL~~~~~~~~~~S~----~~~vlie~sl~gwkEie~ev~RD~~~n~i~v--- 231 (1068)
T PRK12815 159 AEKIGFPIIVRPAYTLGGDGGGIAENEEELEQLARQGLQASP----IHQCLLEESIAGWKEIEYEVMRDRNDNCVTV--- 231 (1068)
T ss_pred HHHCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHCC----CCCEEEEHHCCCCEEEEEEEEEECCCCEEEE---
T ss_conf 986699899983610668965044599999999999996399----9857865011797699999999889897998---
Q ss_pred CCCCCCCCCEEEE------ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--CCCEEEEECCCCCCCCCHHH
Q ss_conf 5421135622554------034455889999999999999886515434102458972--88349982276543320167
Q gi|254780268|r 226 DCSVQRRNQKIWE------EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE--NGQFYFIEMNTRLQVEHPVT 297 (443)
Q Consensus 226 dCSiQrr~qkiiE------eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~--~~~~yflEvN~Rlqveh~vt 297 (443)
|++++-.+..|+ .+|+..|+++..++|+++|.++++++|..|.+||||.++ ++++|++|||||++|+.++.
T Consensus 232 -c~mEnidP~GIHTGDSi~vaP~qTL~d~e~q~lR~~a~~I~~~lgv~G~~NiQFAv~p~~~~~~VIEvNPR~SRssala 310 (1068)
T PRK12815 232 -CNMENIDPVGVHTGDSIVVAPSQTLTDDEYQMLRSASLKIIRALGVVGGCNIQFALDPRSKQYYVIEVNPRVSRSSALA 310 (1068)
T ss_pred -EECCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCEECCEEEEEEECCCCCCEEEEECCCCCCCHHHHH
T ss_conf -5412354454356774534578126999999999999999997280101057998869998289996478622024788
Q ss_pred HHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC--EEEEECCCCCCEEEECCCCCCCEEC
Q ss_conf 88632562011232221022222113333201245330245662211112442--1588668998446777602387707
Q gi|254780268|r 298 EAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGE--ITYFHAPGGLGIRMDSASYQGYTVP 375 (443)
Q Consensus 298 e~~tgvdlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~--i~~~~~p~~~gvRvDt~~~~G~~i~ 375 (443)
+++||+|+.+.+.++|.|.+|+...+++.-. .+..|.|+... ++..+||=..--..|....
T Consensus 311 SKATGyPiAkvaaklalG~~L~ei~n~iTg~-----------t~A~fEP~lDyvvvK~P~~~F~kf~~~d~~Lg------ 373 (1068)
T PRK12815 311 SKATGYPIAKIAAKLAVGYTLDEIKNPLTGL-----------TYASFEPTLDYVVVKFPRWPFDKFGYADRTLG------ 373 (1068)
T ss_pred HHHCCCCHHHHHHHHHCCCCHHHCCCCCCCC-----------CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC------
T ss_conf 8750884899999986388777706641377-----------30333775776999740566444678875447------
Q ss_pred CCCCCC--EEEEEEECCCHHHHHHHHHHHHHHCEECCCC-------CCHHHHHHHHCCHH
Q ss_conf 776843--3899995599899999999876540882637-------78889998968988
Q gi|254780268|r 376 SYYDSL--IAKLIVHGKNRKECMMRLNRALNEIIIDGIK-------TTIPLFQKLIKNED 426 (443)
Q Consensus 376 ~~yDsm--laKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv~-------TN~~~l~~il~~~~ 426 (443)
+ .| .+.+|..|+++++|++|+.|+|+ ....|+. .+.+-|...|.+|.
T Consensus 374 t---~Mks~Gevm~igr~f~eA~~KAlrsle-~~~~g~~~~~~~~~~~~~~l~~~L~~p~ 429 (1068)
T PRK12815 374 T---QMKATGEVMAIGRNFESAFQKALRSLE-IKRNGLSLPELESGKSEEELLQDLRTPD 429 (1068)
T ss_pred C---CCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 5---123332220030028999999998633-5767767765455678999999855899
No 22
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=0 Score=432.36 Aligned_cols=390 Identities=23% Similarity=0.336 Sum_probs=326.9
Q ss_pred CEEEEEECCCHHH-----------HHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHH
Q ss_conf 7068664470999-----------99999888809659998585577187767585799918998530006989999999
Q gi|254780268|r 2 ISKILIANRGEIA-----------LRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAAC 70 (443)
Q Consensus 2 ~~~iLianrGeia-----------~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a 70 (443)
+|||||.+.|+|- ..+++++||.||++|+||+||.+.+++...||+.|..| |+.+.+.++.
T Consensus 7 ikkvLviGsGp~~IGqa~EfDysg~qa~~al~e~g~~vilvN~NpaTv~Td~~~ad~vY~eP--------lt~e~v~~Ii 78 (1063)
T PRK05294 7 IKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEP--------ITPEFVEKII 78 (1063)
T ss_pred CCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCCCCEEEECC--------CCHHHHHHHH
T ss_conf 78899989882510372332656999999999869989998798544107877664378727--------9899999999
Q ss_pred HHCCCCEEECCCC---HHHCCHHHHH--HHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 8709989945853---1310976668--8984592162689899987218998877664224433243334557999873
Q gi|254780268|r 71 EVTGADAIHPGYG---FLSENAKFAE--ILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPI 145 (443)
Q Consensus 71 ~~~~~daihPGyG---fLsEn~~fa~--~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~ 145 (443)
++.++|+|.|++| .|+-..++.+ .+++.|++.+|.+.++|+.+.|+..|++++.+.|+|++++....+.+|+.++
T Consensus 79 ~~E~Pd~il~~~GGQtaLnla~~L~~~GiL~~~~v~lLGt~~~~I~~aedR~~F~~~l~~i~~p~~~s~~~~s~~ea~~~ 158 (1063)
T PRK05294 79 EKERPDAILPTMGGQTALNLALELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHTMEEALEV 158 (1063)
T ss_pred HHHCCCEEEECCCCHHHHHHHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHH
T ss_conf 97599978866778059999999997596776497275699999997778999999999769999972530999999999
Q ss_pred HHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf 20033012200023457821688875066899999875432125899816884434201103315777347870236566
Q gi|254780268|r 146 AKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGER 225 (443)
Q Consensus 146 a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~er 225 (443)
++++||||+|+|++..||+|+.+|++++||.+.++.+...+ +.++|+||+++.||+|||+.|++|+.||++.+
T Consensus 159 a~~igyPvivRps~~LGG~g~~i~~n~~eL~~~~~~~~~~S----~~~qvLie~sl~gwkEie~ev~rD~~~n~i~v--- 231 (1063)
T PRK05294 159 AEEIGYPVIIRPSFTLGGTGGGIAYNREELEEIVERGLDLS----PTTEVLIEESLLGWKEYEMEVMRDKADNCIIV--- 231 (1063)
T ss_pred HHHCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHC----CCCCEEEEHHCCCCEEEEEEEEEECCCCEEEE---
T ss_conf 98659988998442167876404349999999999999619----99868966111798899999998189998999---
Q ss_pred CCCCCCCCCEEEE------ECCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEC--CCCEEEEECCCCCCCCCHH
Q ss_conf 5421135622554------03445588999999999999988651543-4102458972--8834998227654332016
Q gi|254780268|r 226 DCSVQRRNQKIWE------EAHSPVISAQDRTEIGETCVKAMKKIDYR-GAGTIEFLYE--NGQFYFIEMNTRLQVEHPV 296 (443)
Q Consensus 226 dCSiQrr~qkiiE------eaPap~l~~~~~~~i~~~A~~~~~~~g~~-g~~tvEFl~~--~~~~yflEvN~Rlqveh~v 296 (443)
|++++-.+-.|+ .+|+..|+++..++|+++|.++++++|.. |.+||||.++ ++++|++|||||++|+.++
T Consensus 232 -~~mEnidp~GIHtGDSi~vaP~qTL~d~e~q~lR~~a~kI~~~L~iv~G~~NiQfA~~p~~~~~~VIEvNPR~SRssal 310 (1063)
T PRK05294 232 -CSIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAILREIGVETGGSNVQFAVNPKDGRYVVIEMNPRVSRSSAL 310 (1063)
T ss_pred -EEECCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCHHH
T ss_conf -5411354564566672535688658989999999999999998295736447999874899848999637750010688
Q ss_pred HHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCE--EEEECCCCCCEEEECCCCCCCEE
Q ss_conf 7886325620112322210222221133332012453302456622111124421--58866899844677760238770
Q gi|254780268|r 297 TEAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEI--TYFHAPGGLGIRMDSASYQGYTV 374 (443)
Q Consensus 297 te~~tgvdlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i--~~~~~p~~~gvRvDt~~~~G~~i 374 (443)
.+++||+||.+.+.++|+|.+|+...+++.-. .+.-|.|+-..+ +..+||=..--..|... |.+.
T Consensus 311 aSKaTGyPiA~vaaklalG~~L~ei~n~vT~~-----------t~A~fEP~ldyv~vK~p~~~f~kf~~~~~~L--g~~m 377 (1063)
T PRK05294 311 ASKATGYPIAKVAAKLAVGYTLDEIKNDITGK-----------TPASFEPSIDYVVTKIPRFAFEKFPGADRRL--TTQM 377 (1063)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHCCCCCCC-----------CCCCCCCCCCEEEEEECCCCCCCCCCCCHHH--CCCC
T ss_conf 88873887899999987179757836764466-----------3144477566599970477710035854432--4301
Q ss_pred CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECCCC----CCHHHHHHHHCCHH
Q ss_conf 77768433899995599899999999876540882637----78889998968988
Q gi|254780268|r 375 PSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIK----TTIPLFQKLIKNED 426 (443)
Q Consensus 375 ~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv~----TN~~~l~~il~~~~ 426 (443)
.. .+.+|..|+++++|++|+.|.|+ ....|+. .+.+-|.+.|.+|.
T Consensus 378 ks-----~Gevm~igr~feea~~KAirSle-~~~~gl~~~~~~~~eel~~~L~~p~ 427 (1063)
T PRK05294 378 KS-----VGEVMAIGRTFEESLQKALRSLE-IGLTGLDEKEDLALEEIRRELKKPT 427 (1063)
T ss_pred CC-----CCHHHHHCCHHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 13-----41022222328999999998442-5866777777789999999863799
No 23
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=0 Score=400.52 Aligned_cols=298 Identities=24% Similarity=0.345 Sum_probs=267.0
Q ss_pred EEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHH
Q ss_conf 06866447099-----------9999998888096599985855771877675857999189985300069899999998
Q gi|254780268|r 3 SKILIANRGEI-----------ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACE 71 (443)
Q Consensus 3 ~~iLianrGei-----------a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~ 71 (443)
+||||.+.|++ .+..++++|++||++|+||+||++.|++...+|..|+.| |..|.++++++
T Consensus 554 ~kvlvlGsGp~rIGqgiEFDY~~v~a~~alk~~G~~~imIN~NPETVSTD~d~sDrLYFEp--------lt~E~V~~I~~ 625 (1063)
T PRK05294 554 KKVMILGGGPNRIGQGIEFDYCCVHAALALREAGYETIMVNCNPETVSTDYDTSDRLYFEP--------LTLEDVLEIIE 625 (1063)
T ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEECC--------CCHHHHHHHHH
T ss_conf 6379965777320444230067999999999659815895378111115656676145436--------88999999999
Q ss_pred HCCCCEEEC---CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 709989945---85313109766688984592162689899987218998877664224433243334557999873200
Q gi|254780268|r 72 VTGADAIHP---GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKE 148 (443)
Q Consensus 72 ~~~~daihP---GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~ 148 (443)
..++++|.+ |+..+ .+|..++++|++++|.++++|+.++||.+|++++.++|+++|||....+.+++++++++
T Consensus 626 ~E~p~gvi~qfGGQt~~----nla~~L~~~g~~ilGts~~~Id~aEDR~~F~~~l~~l~i~qp~~~~a~s~~ea~~~a~~ 701 (1063)
T PRK05294 626 KEKPKGVIVQFGGQTPL----KLAKALEAAGVPILGTSPDAIDLAEDRERFQKLLEKLGIKQPPNGTATSVEEALEIAEE 701 (1063)
T ss_pred HHCCCEEEEECCCCCHH----HHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHH
T ss_conf 75898799973883678----99999998799477788788787875888999998659999997076689999999986
Q ss_pred CCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCC
Q ss_conf 33012200023457821688875066899999875432125899816884434201103315777347870236566542
Q gi|254780268|r 149 IGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCS 228 (443)
Q Consensus 149 iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCS 228 (443)
+||||+|+|++..||+||.+|++.+||.+.++.+... .++.+|+|+|||++++|+||++++||.. ++.-+ -
T Consensus 702 iGyPvlvRPSyVLGG~~M~iv~~~~eL~~yl~~a~~v----s~~~pvlIdkfl~ga~E~eVDai~Dg~~-v~I~g----I 772 (1063)
T PRK05294 702 IGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKV----SPDHPVLIDRFLEDAIEVDVDAICDGED-VLIGG----I 772 (1063)
T ss_pred CCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHH----CCCCCEEEEHHHHHCHHHHHHEEECCCE-EEEEE----E
T ss_conf 4986684343102577147856999999999999863----8999778635432024544302314884-89999----8
Q ss_pred CCCCCCEEEE------ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHC
Q ss_conf 1135622554------0344558899999999999998865154341024589728834998227654332016788632
Q gi|254780268|r 229 VQRRNQKIWE------EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITG 302 (443)
Q Consensus 229 iQrr~qkiiE------eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tg 302 (443)
+|+-.+-.|+ ..|+..|++++.++|.+++.++++++++.|..|+||++.++++|+||+|||.||+.|+.+++||
T Consensus 773 mEHIE~AGVHSGDS~~V~Pp~~Ls~~~~~~i~~~t~~ia~~l~v~G~~NiQf~vk~~~vyVIE~NpRaSRtvPfvSKatg 852 (1063)
T PRK05294 773 MEHIEEAGVHSGDSACSLPPYTLSEEIIDEIREQTKKLALELNVVGLMNVQFAVKDDEVYVIEVNPRASRTVPFVSKATG 852 (1063)
T ss_pred EEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCCHHHHHHCC
T ss_conf 72001457566784288168558999999999999999985566664203355409838999944744453044576419
Q ss_pred CCCHHHHHHHHHCCCCCCC
Q ss_conf 5620112322210222221
Q gi|254780268|r 303 IDLVHEQIYVASENRLSVQ 321 (443)
Q Consensus 303 vdlv~~~~~~a~g~~l~~~ 321 (443)
+||++.+.++++|.+|...
T Consensus 853 ~pl~~iAtk~~lG~~l~~l 871 (1063)
T PRK05294 853 VPLAKIAARVMLGKKLAEL 871 (1063)
T ss_pred CCHHHHHHHHHCCCCHHHC
T ss_conf 9799999999829973442
No 24
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=0 Score=393.71 Aligned_cols=295 Identities=24% Similarity=0.400 Sum_probs=264.2
Q ss_pred EEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHH
Q ss_conf 06866447099-----------9999998888096599985855771877675857999189985300069899999998
Q gi|254780268|r 3 SKILIANRGEI-----------ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACE 71 (443)
Q Consensus 3 ~~iLianrGei-----------a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~ 71 (443)
+||||.+.|++ .+..++++|++||+||+||+||++.|++...+|.+|+-| |+.+.++++++
T Consensus 555 ~kvliLGsGP~RIGqgiEFDYc~vha~~aLr~~G~etImiN~NPETVSTDyD~sDrLYFEP--------lt~E~V~~I~~ 626 (1068)
T PRK12815 555 KKVLILGSGPIRIGQGIEFDYMCVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEP--------ITLEDILNVAE 626 (1068)
T ss_pred CEEEEECCCCCEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEECC--------CCHHHHHHHHH
T ss_conf 3499956787142244240025899999999689748996278431236745577357536--------87999999999
Q ss_pred HCCCCEEEC---CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 709989945---85313109766688984592162689899987218998877664224433243334557999873200
Q gi|254780268|r 72 VTGADAIHP---GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKE 148 (443)
Q Consensus 72 ~~~~daihP---GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~ 148 (443)
..++++|.. |+..+ .+|..++++|++++|.++++|+.++||.+|++++.++|++.+||....+.+++++++++
T Consensus 627 ~E~p~gVivqfGGQt~l----nla~~L~~~gv~IlGts~~~Id~aEdR~~F~~ll~~l~i~~p~~~~~~~~~ea~~~a~~ 702 (1068)
T PRK12815 627 AENIKGVIVQFGGQTAI----NLAKPLEEAGLPILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATSEEEALAFAKR 702 (1068)
T ss_pred HHCCCEEEEECCCCCHH----HHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHH
T ss_conf 85899799964882367----99999997699498278688642413999999999738999996354566799999986
Q ss_pred CCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCC
Q ss_conf 33012200023457821688875066899999875432125899816884434201103315777347870236566542
Q gi|254780268|r 149 IGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCS 228 (443)
Q Consensus 149 iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCS 228 (443)
+||||+|+|++..||+||.+|++.+||.+.++.+.+ .+.+|+|+|||++ +|+||++++|+...+++ | .
T Consensus 703 iGyPvlvRPSyvLgG~~m~iv~~~~eL~~y~~~a~~------~~~pvlIdkfl~g-~E~evDai~Dg~~v~I~-g----I 770 (1068)
T PRK12815 703 IGYPVLIRPSYVIGGQGMAVVYDEPALEAYLEENVQ------QLYPILIDQFIDG-KEYEVDAISDGEDVTIP-G----I 770 (1068)
T ss_pred CCCCEEECCCCCCCCCEEEEECCHHHHHHHHHHHCC------CCCCEEEEECCCC-CEEEEEEEECCCCEEEE-E----E
T ss_conf 499778424433577423897599999999985157------8885562300054-04688999649955999-9----6
Q ss_pred CCCCCCEEEE------ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHC
Q ss_conf 1135622554------0344558899999999999998865154341024589728834998227654332016788632
Q gi|254780268|r 229 VQRRNQKIWE------EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITG 302 (443)
Q Consensus 229 iQrr~qkiiE------eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tg 302 (443)
+++-.|-.|+ ..|+..|+++..++|.+++.+++++++++|+.|+||++.++++|+||+|||.||+.|+.+++||
T Consensus 771 mEHIE~AGVHSGDS~~v~Pp~~Ls~~~~~~i~~~t~kia~~L~v~Gl~NiQfavk~~~vyVIEvNpRASRTvPFvSKatG 850 (1068)
T PRK12815 771 IEHIEQAGVHSGDSIAVLPPQSLSPEQQAKIRDQAIKIAKKLGFRGIMNIQFLLAGDEIYVLEVNPRASRTVPFVSKATG 850 (1068)
T ss_pred EECHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCEEECCEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCC
T ss_conf 42113146656885488389878999999999999999964835451269999979989999961875543266787329
Q ss_pred CCCHHHHHHHHHCCCCCCC
Q ss_conf 5620112322210222221
Q gi|254780268|r 303 IDLVHEQIYVASENRLSVQ 321 (443)
Q Consensus 303 vdlv~~~~~~a~g~~l~~~ 321 (443)
+||++.+.++++|.+|...
T Consensus 851 ~pl~~iAtkvmlG~~L~~l 869 (1068)
T PRK12815 851 VPLAKLATKVLLGKSLAEL 869 (1068)
T ss_pred CCHHHHHHHHHCCCCHHHC
T ss_conf 8899999999849975662
No 25
>pfam02786 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.
Probab=100.00 E-value=0 Score=382.75 Aligned_cols=206 Identities=45% Similarity=0.710 Sum_probs=199.2
Q ss_pred CHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCC
Q ss_conf 899887766422443324333--455799987320033012200023457821688875066899999875432125899
Q gi|254780268|r 115 DKITAKKTAQQLGIPVVPGSG--EVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGN 192 (443)
Q Consensus 115 DK~~~k~~a~~~GVP~~p~~~--~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd 192 (443)
||..+|++++++|||++||.. ..+.+++.++++++|||+||||++||||+||++|++.+||.++|+.+.+++...|++
T Consensus 1 Dk~~~k~~l~~~GvP~~~~~~~~~~s~ee~~~~a~~iG~PvvvKp~~~g~g~G~~~v~~~~eL~~a~~~a~~~a~~~~~~ 80 (211)
T pfam02786 1 DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNEEELAELFALALAEAPAAFGN 80 (211)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98999999998698919987888799999999999859978997377789987512412778999999998751431699
Q ss_pred CCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 81688443420110331577734787023656654211356225540344558899999999999998865154341024
Q gi|254780268|r 193 DAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTI 272 (443)
Q Consensus 193 ~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tv 272 (443)
++|++|+||+|+||+|+++++|++|+++++++++|+.|++.++.++.+|+|.|+++++++|.++|.++++++||.|+++|
T Consensus 81 ~~vlvEe~i~g~~ei~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Pa~~l~~~~~e~i~~~a~~~~~~lg~~G~~~v 160 (211)
T pfam02786 81 PQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQRRTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTV 160 (211)
T ss_pred CCEEEEECCCCCEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEECCCEE
T ss_conf 83899740477658999999827998999996332250335844468179999999999999999998752644233247
Q ss_pred EEEEC--CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 58972--8834998227654332016788632562011232221022222
Q gi|254780268|r 273 EFLYE--NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRLSV 320 (443)
Q Consensus 273 EFl~~--~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l~~ 320 (443)
||+++ ++++||||||||+|++|++|+++||+||++.|+++|+|+||+.
T Consensus 161 ef~~~~~~~~~~~iEvNpR~~~~~~~t~~~tg~~l~~~~~~~a~G~~l~e 210 (211)
T pfam02786 161 EFALDPFSGEYYFIEMNTRLQVSHALAEKATGYDLAKEAAKIALGYPLPE 210 (211)
T ss_pred EEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 89996799959999670896834778899879489999999977999786
No 26
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=0 Score=360.35 Aligned_cols=379 Identities=18% Similarity=0.240 Sum_probs=292.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf 70686644709999999988880965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r 2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG 81 (443)
Q Consensus 2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG 81 (443)
.|||+|.|+|+.+...+++|++||+++++++ ++.+++..+.||+.++. +|.|.+++.+.++++++|+|..-
T Consensus 12 ~kkIgIlGgGQLg~Mla~aA~~LG~~vivld--~~~d~PA~~vAd~~~~~-------~~~D~~al~~~a~~~~~DvvT~E 82 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVD--RYANAPAMQVAHRSHVI-------DMLDGDALRAVIEREKPDLIVPE 82 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEC--CCCCCCHHHHCCEEEEC-------CCCCHHHHHHHHHHHCCCEEEEC
T ss_conf 8889998988999999999998799899984--89959446728657977-------87899999999998389989978
Q ss_pred CCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf 531310976668898459216268989998721899887766-4224433243334557999873200330122000234
Q gi|254780268|r 82 YGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTA-QQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAG 160 (443)
Q Consensus 82 yGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a-~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~g 160 (443)
. =+-+.+..+.+++.|+.++ |++++++.++||...|+++ +++|||++||....+.+++.++++++|||+|+||++|
T Consensus 83 ~--E~V~~~~L~~le~~G~~v~-Ps~~al~i~qdR~~~k~~~~~~lgIPt~~f~~v~s~~el~~~~~~lG~P~vlK~~~G 159 (395)
T PRK09288 83 I--EAIATDALVELEAEGFNVV-PTARATRLTMNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEEIGYPCVVKPVMS 159 (395)
T ss_pred C--CCCCHHHHHHHHHCCCEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHCCCEEEECCCC
T ss_conf 5--4478899999986893367-999999998767899999997469999995470899999999998298758722415
Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 57821688875066899999875432125899816884434201103315777347870236566542113562255403
Q gi|254780268|r 161 GGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEA 240 (443)
Q Consensus 161 GGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEea 240 (443)
++|||++++++.+|+.++|+.+...+.. +.+++++|+||+..+|+.|.+.++..|.+..++--+ .+|+++....-.+
T Consensus 160 ~DGKGq~~v~~~~dl~~a~~~a~~~~~~--~~~~~ivE~~v~f~~E~Svi~aR~~~g~~~~~~pve-~~~~~gil~~s~~ 236 (395)
T PRK09288 160 SSGKGQSVVRSPEDIEAAWEYAQEGGRG--GAGRVIVEEFIDFDYEITLLTVRAVDGGTHFCAPIG-HRQEDGDYRESWQ 236 (395)
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHCCC--CCCCEEEEEEECCCEEEEEEEEECCCCCEEEECCCC-CEEECCEEEEEEC
T ss_conf 7887528966878889999999850757--897089988853617999999996999889966854-2553342799715
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 44558899999999999998865154341024589728834998227654332016788632562011232221022222
Q gi|254780268|r 241 HSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRLSV 320 (443)
Q Consensus 241 Pap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l~~ 320 (443)
|++ +++++.++++++|.+++++++|+|+.+|||++.++++||+|+|||..-+.-+|-.....+--+.++|..+|.||+.
T Consensus 237 Pa~-i~~~v~~~a~~ia~~i~~~L~~vGvl~VEfFv~~d~llvNEiAPR~HNSGH~Ti~~~~~sQFe~hlRai~glPlg~ 315 (395)
T PRK09288 237 PQP-MSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGDEVYFSEVSPRPHDTGMVTLISQNLSEFELHARAILGLPIPD 315 (395)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEECCCCCCCCEEEEHHCCCCHHHHHHHHHCCCCCCC
T ss_conf 778-9999999999999999997487144889999978908999920787786217621035419999999980998898
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCC-CCCEEEEECCCCCCEEEECC--CCCCCEECCCCCCCEEEEEEECCCHHHHHH
Q ss_conf 113333201245330245662211112-44215886689984467776--023877077768433899995599899999
Q gi|254780268|r 321 QQKDITFSGHAIECRINAEDPENFIPN-PGEITYFHAPGGLGIRMDSA--SYQGYTVPSYYDSLIAKLIVHGKNRKECMM 397 (443)
Q Consensus 321 ~~~~i~~~g~aie~Ri~aEdp~~f~Ps-~G~i~~~~~p~~~gvRvDt~--~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~ 397 (443)
.+. ..-+.-+.+..++.. ..|. .|.=+....|+ -.+.+++- ...| -=++++.+.|+|.++|++
T Consensus 316 ~~~----~~p~a~~~~lg~~~~-~~~~~~~~~~~~~~p~-~~~h~YGK~~~r~g--------RKmGHvt~~g~~~~~a~~ 381 (395)
T PRK09288 316 IRL----YGPAASAVILAEGES-ANPSFDGLAEALAVPG-TDVRLFGKPEIRGG--------RRMGVALATAEDVEEARE 381 (395)
T ss_pred CCC----CCCCEEEEEECCCCC-CCCCHHHHHHHHCCCC-CEEEEECCCCCCCC--------CCEEEEEEEECCHHHHHH
T ss_conf 520----367379999526667-7866346999971999-87999289999899--------833899986099999999
Q ss_pred HHHHHHHHCEECC
Q ss_conf 9998765408826
Q gi|254780268|r 398 RLNRALNEIIIDG 410 (443)
Q Consensus 398 ~l~~aL~~~~I~G 410 (443)
|+..|++..+|+|
T Consensus 382 ~a~~a~~~i~v~g 394 (395)
T PRK09288 382 KAKKAAAKVKVRG 394 (395)
T ss_pred HHHHHHHHEEECC
T ss_conf 9999974458278
No 27
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=355.41 Aligned_cols=361 Identities=25% Similarity=0.341 Sum_probs=300.4
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC---HHHCCHH
Q ss_conf 9999998888096599985855771877675857999189985300069899999998709989945853---1310976
Q gi|254780268|r 14 ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG---FLSENAK 90 (443)
Q Consensus 14 a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG---fLsEn~~ 90 (443)
...+++++|+.|+++|.|+++|.+.+++..+||+.|+.| +..+.+..++++..+|||.|..| .|+-..+
T Consensus 18 G~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP--------~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~ 89 (400)
T COG0458 18 GTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEP--------ITKEPVEKIIEKERPDAILPTLGGQTALNAALE 89 (400)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEEC--------CCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHH
T ss_conf 789999998669759997288721247800053026624--------737889999975376626324687413468899
Q ss_pred HH--HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEE
Q ss_conf 66--8898459216268989998721899887766422443324333455799987320033012200023457821688
Q gi|254780268|r 91 FA--EILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRI 168 (443)
Q Consensus 91 fa--~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~v 168 (443)
+. ..|++.|+..||.++++|+.+.||.+||+.++++|+|+| .....+.+++.++++++|||++|||+++.||.|..+
T Consensus 90 l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i 168 (400)
T COG0458 90 LKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIGYPVIVKPSFGLGGSGGGI 168 (400)
T ss_pred HHHHCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCEEE
T ss_conf 8772645644977994587895564209999999998399988-412356777765576369977980685788875168
Q ss_pred EEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE------ECCC
Q ss_conf 8750668999998754321258998168844342011033157773478702365665421135622554------0344
Q gi|254780268|r 169 AYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE------EAHS 242 (443)
Q Consensus 169 v~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE------eaPa 242 (443)
++|++||.+..+...+.+ +..+|++|++|.|++|+|..|++|+++|++.+ |++.+-....++ .+||
T Consensus 169 ~~n~eel~~~~~~~l~~s----~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivv----c~men~dp~gvhtgdsi~vapa 240 (400)
T COG0458 169 AYNEEELEEIIEEGLRAS----PVEEVLIEESIIGWKEFEYEVVRDGKDNCIVV----CNMENLDPMGVHTGDSITVAPA 240 (400)
T ss_pred EECHHHHHHHHHHCCCCC----CCCCCEEEEEECCCEEEEEEEEEECCCCEEEE----EECCCCCCCCCCCCCEEEECCC
T ss_conf 718999999987322447----64200124421685699999998379987999----8678656566444323652145
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 558899999999999998865154341024589728--834998227654332016788632562011232221022222
Q gi|254780268|r 243 PVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYEN--GQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRLSV 320 (443)
Q Consensus 243 p~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~--~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l~~ 320 (443)
+.+++...+.+++++.++.+++|..|-+||||.++. +++||+|||||.++..++++++||.++.+...++|.|..|+.
T Consensus 241 qtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrssaLaskAtgypia~vaakla~g~~l~E 320 (400)
T COG0458 241 QTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSSALASKATGYPIAKVAAKLAVGYTLDE 320 (400)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCHH
T ss_conf 56543788998887777888741147873148986998559999956876764031554468769999997503567065
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCE--EEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHH
Q ss_conf 1133332012453302456622111124421--58866899844677760238770777684338999955998999999
Q gi|254780268|r 321 QQKDITFSGHAIECRINAEDPENFIPNPGEI--TYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMR 398 (443)
Q Consensus 321 ~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i--~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~ 398 (443)
.++++.-++++ .|.|+..-+ +-.+||-..-.+.|.... ....| .+.+++.|+++++|++|
T Consensus 321 i~n~it~~t~a-----------~fePsldyvv~k~pr~~f~kf~~~~~~l~------~~mks-~gevm~igr~f~eal~k 382 (400)
T COG0458 321 IRNDITGRTPA-----------SFEPSLDYVVTKIPRFDFEKFPGADRRLG------TQMKS-VGEVMAIGRTFEEALQK 382 (400)
T ss_pred HCCCCCCCCCC-----------CCCCCCCEEEEECCCCCCCCCCCCCCCEE------EEEEC-CCEEEEECCHHHHHHHH
T ss_conf 44766444344-----------45776660366347787321345563310------02300-10289963129999999
Q ss_pred HHHHHHHCEECC
Q ss_conf 998765408826
Q gi|254780268|r 399 LNRALNEIIIDG 410 (443)
Q Consensus 399 l~~aL~~~~I~G 410 (443)
+.|+|+ ....|
T Consensus 383 a~~~l~-~~~~~ 393 (400)
T COG0458 383 ALRSLE-IGLAG 393 (400)
T ss_pred HHHHHC-CCCCC
T ss_conf 998611-46651
No 28
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=100.00 E-value=4e-42 Score=319.54 Aligned_cols=289 Identities=20% Similarity=0.319 Sum_probs=243.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf 70686644709999999988880965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r 2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG 81 (443)
Q Consensus 2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG 81 (443)
|.+|||-+-|- .+-++|++|+.++.+.++.+|.|..++....||+.|.+|.. ..++| ++.|+++|+++++|+|.||
T Consensus 1 m~nILvt~~G~-~~~ii~~lk~~~~~~~Vi~~D~~~~a~~~~~aD~~y~~P~~-~d~~y--~~~ll~i~~~~~id~iiP~ 76 (325)
T PRK12767 1 MMNILVTSAGR-RVQLVKALKKSLLGGKVIGADISPLAPALYFADKFYVVPKV-TDPNY--IDALLDICKKENIDALIPL 76 (325)
T ss_pred CCEEEEECCCC-HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCEEEECCCC-CCHHH--HHHHHHHHHHHCCCEEEEC
T ss_conf 94899986786-89999999976998599996899899534454889987888-98789--9999999998799999977
Q ss_pred CC----HHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHHHCCCCHHHHH
Q ss_conf 53----131097666889845921626898999872189988776642244332433345579998-7320033012200
Q gi|254780268|r 82 YG----FLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAM-PIAKEIGFPVLVK 156 (443)
Q Consensus 82 yG----fLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~-~~a~~iGyPviiK 156 (443)
.. ++| ..+..+++.|+.+++|++++++.+.||..++++++++|+|+|+.....+.+++. ..++++|||+++|
T Consensus 77 ~d~El~~la---~~~~~l~~~gi~v~~~~~e~i~~~~DK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~fP~vvK 153 (325)
T PRK12767 77 IDPELPLLA---QHRDEFKEIGVKVLVSSKEVIEICNDKWLTYEFLKENGINTPKSYLPEDLEDLLKALAEELGFPLIVK 153 (325)
T ss_pred CCHHHHHHH---HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 850266899---99999996799895697999998549999999999759998982055899999999986569966985
Q ss_pred CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 02345782168887506689999987543212589981688443420110331577734787023656654211356225
Q gi|254780268|r 157 ASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKI 236 (443)
Q Consensus 157 p~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qki 236 (443)
|++|+||+|++++++.+||..++.. ..++++++||+| +|++|+++.|.+|++++. ++|++.++
T Consensus 154 P~~g~gs~Gv~~i~~~~el~~~~~~----------~~~~ivqe~i~G-~E~tvdv~~d~~g~~~~~------~~~~r~~~ 216 (325)
T PRK12767 154 PRDGSGSIGVFKVNNREELEFLLRY----------NPNLIIQEFIEG-QEYTVDVLCDLNGEVISI------VPRKRIEV 216 (325)
T ss_pred ECCCCCCCCEEEECCHHHHHHHHHH----------CCCEEEEECCCC-CEEEEEEEEECCCCEEEE------EEEEECCC
T ss_conf 3567887754997999999999974----------897498703489-889999999789999999------99873364
Q ss_pred E--EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHH
Q ss_conf 5--40344558899999999999998865154341024589728834998227654332016788632562011232221
Q gi|254780268|r 237 W--EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVAS 314 (443)
Q Consensus 237 i--EeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~ 314 (443)
. +..++.... ..++.+++.++++++|+.|..+|||++++|++||+|+|||.+-..|++ ...|+|++++.++..+
T Consensus 217 ~~G~~~~~~~~~---~~~l~~~~~~i~~~l~~~G~~~vq~~~~~g~~~iiEiNPRf~g~~~l~-~~aG~n~p~~~~~~~l 292 (325)
T PRK12767 217 RAGETSKGVTVK---NPELFKLAERIAEKLGARGPLNIQCFVVDGEPYLFEINPRFGGGYPLR-AMAGFNEPDILIRNLL 292 (325)
T ss_pred CCCCCCCCEECC---HHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHH-HHHCCCHHHHHHHHHC
T ss_conf 457867753057---999999999999981985459999999899699999978878646739-8839899999999984
Q ss_pred CCCC
Q ss_conf 0222
Q gi|254780268|r 315 ENRL 318 (443)
Q Consensus 315 g~~l 318 (443)
|+..
T Consensus 293 g~~~ 296 (325)
T PRK12767 293 GGEN 296 (325)
T ss_pred CCCC
T ss_conf 9998
No 29
>KOG0370 consensus
Probab=100.00 E-value=3.1e-43 Score=327.48 Aligned_cols=380 Identities=19% Similarity=0.279 Sum_probs=323.6
Q ss_pred CEEEEEECCCHHH-----------HHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHH
Q ss_conf 7068664470999-----------99999888809659998585577187767585799918998530006989999999
Q gi|254780268|r 2 ISKILIANRGEIA-----------LRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAAC 70 (443)
Q Consensus 2 ~~~iLianrGeia-----------~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a 70 (443)
-+|+||.+.|-.. -..||++||.||.||.++.+..+..+...+||+.|+|+- ..+.+-++.
T Consensus 377 ~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflpv--------T~~~vt~vi 448 (1435)
T KOG0370 377 VKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLPV--------TPEYVTKVI 448 (1435)
T ss_pred CCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEEEC--------CHHHHHHHH
T ss_conf 517999815873321240355407889876553261799978960100025552128999505--------879999998
Q ss_pred HHCCCCEEE---CCCCHHHCCHHHHH--HHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 870998994---58531310976668--8984592162689899987218998877664224433243334557999873
Q gi|254780268|r 71 EVTGADAIH---PGYGFLSENAKFAE--ILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPI 145 (443)
Q Consensus 71 ~~~~~daih---PGyGfLsEn~~fa~--~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~ 145 (443)
+...+|+|. .|++.|+..-++-+ .+++.|++.+|.+.+.+-...|+..+-+.+.+.+.++.|+....+.++++++
T Consensus 449 ~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~a~~sie~al~a 528 (1435)
T KOG0370 449 KAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSEAVSTIEEALEA 528 (1435)
T ss_pred HHHCCCEEEEECCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 86187737884277654456435300210000341543787552123142788999987631505625667679999988
Q ss_pred HHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf 20033012200023457821688875066899999875432125899816884434201103315777347870236566
Q gi|254780268|r 146 AKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGER 225 (443)
Q Consensus 146 a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~er 225 (443)
++++|||||+++++..||.|-..+.|++||.+....+... ..+++|||.+.||+|+|..|++|.++||+.+
T Consensus 529 ae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~------s~QilvekSlkGwkevEyevvrDa~~nciTv--- 599 (1435)
T KOG0370 529 AERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALAL------SPQILVEKSLKGWKEVEYEVVRDAYDNCITV--- 599 (1435)
T ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC------CCEEEEHHHHCCCCCEEEEEEECCCCCHHHH---
T ss_conf 8862828999999985376643344489999997643125------8615422332443434899980200040533---
Q ss_pred CCCCCCCCCEEEE------ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--CCCEEEEECCCCCCCCCHHH
Q ss_conf 5421135622554------034455889999999999999886515434102458972--88349982276543320167
Q gi|254780268|r 226 DCSVQRRNQKIWE------EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE--NGQFYFIEMNTRLQVEHPVT 297 (443)
Q Consensus 226 dCSiQrr~qkiiE------eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~--~~~~yflEvN~Rlqveh~vt 297 (443)
|.+++-++..|+ .||++.|+++..+.++..|+++.+++|..|-++|||.++ .-++|++|||.||++.....
T Consensus 600 -cnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGEcniQyaL~p~s~~y~IiEVNarLSrssaLA 678 (1435)
T KOG0370 600 -CNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNIQYALNPYSLEYRIIEVNARLSRSSALA 678 (1435)
T ss_pred -CCCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHCCHHHEECCCCCCCCCCEEEECCCCEEEEEEEEEEEEEEHHHHH
T ss_conf -5773457620101650799614225768899987502021102687665653044166630479999875774013443
Q ss_pred HHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCE--EEEECCCCCCEEEECCCCCCCEEC
Q ss_conf 886325620112322210222221133332012453302456622111124421--588668998446777602387707
Q gi|254780268|r 298 EAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEI--TYFHAPGGLGIRMDSASYQGYTVP 375 (443)
Q Consensus 298 e~~tgvdlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i--~~~~~p~~~gvRvDt~~~~G~~i~ 375 (443)
+++||.+|.-.+.++|+|.||+...+.+.-. .. .+|.||-.-+ +-.+|.-+.-.|+.+.+.+
T Consensus 679 SkaTgypLAy~aAKlalg~~lpe~~n~Vt~~--T~---------AcFEpslDY~v~KiprWDl~kf~~vs~~igs----- 742 (1435)
T KOG0370 679 SKATGYPLAYTAAKLALGIPLPELKNSVTKT--TT---------ACFEPSLDYCVVKIPRWDLSKFQRVSTEIGS----- 742 (1435)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC--EE---------CCCCCCHHHEEEECCCCCHHHHHHHHHHHCH-----
T ss_conf 2676675899999870486034677611252--00---------1457532013440565337878788876252-----
Q ss_pred CCCCCC--EEEEEEECCCHHHHHHHHHHHHHHCEECCCCCCHHHHHHH
Q ss_conf 776843--3899995599899999999876540882637788899989
Q gi|254780268|r 376 SYYDSL--IAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLFQKL 421 (443)
Q Consensus 376 ~~yDsm--laKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv~TN~~~l~~i 421 (443)
|| ++.+++.|+++++|++|+.|..+. .+.|+. ..+++..+
T Consensus 743 ----smKSvgEvm~iGR~feea~QKalr~vd~-~~~Gf~-~~~~~~~~ 784 (1435)
T KOG0370 743 ----SMKSVGEVMAIGRTFEEAFQKALRMVDP-SLLGFM-STPFLDDL 784 (1435)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHCCCC-CCCCHHHH
T ss_conf ----5652466662213079999887751492-323730-10214457
No 30
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=100.00 E-value=1.3e-35 Score=273.26 Aligned_cols=362 Identities=20% Similarity=0.293 Sum_probs=274.1
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf 70686644709999999988880965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r 2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG 81 (443)
Q Consensus 2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG 81 (443)
-++|.|.+-|+.+.-.+.+++.||++++++ +||.+++....||+.+.- +|.|.+++.+.++. ||.|-.
T Consensus 7 ~~tIGIlGgGQLgrMla~aA~~lG~~v~vl--dp~~~~PA~~va~~~~~~-------~~~D~~al~~fa~~--~DviT~- 74 (377)
T PRK06019 7 GKTIGIIGGGQLGRMLALAAAPLGYKVIVL--DPDADCPAAQVADRVIVA-------DYDDVAALRELAEQ--CDVITY- 74 (377)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEE--CCCCCCCHHHHCCEEEEC-------CCCCHHHHHHHHHC--CCEEEE-
T ss_conf 999999878689999999999789989998--489849847837848986-------88989999999845--999997-
Q ss_pred CCHHHCC--HHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 5313109--76668898459216268989998721899887766422443324333455799987320033012200023
Q gi|254780268|r 82 YGFLSEN--AKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASA 159 (443)
Q Consensus 82 yGfLsEn--~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~ 159 (443)
=.|| .+.-+.+++.+- +-|++++++.++||...|+++.++|+||+||....+.+++.++.+++|||+|+|++.
T Consensus 75 ---E~EnI~~~~L~~le~~~~--v~P~~~al~i~QdR~~eK~~l~~lgiptapf~~v~s~~dl~~~~~~lg~P~vlKt~~ 149 (377)
T PRK06019 75 ---EFENVPAEALDLLAARVP--VPPGPDALAIAQDRLTEKQFLDELGIPVAPFALVDSAEDLDAAIADLGLPAVLKTRR 149 (377)
T ss_pred ---CCCCCCHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEECCC
T ss_conf ---817689999999970896--687989999886279999999976999888067189999999999729976995133
Q ss_pred CCC-CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 457-8216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r 160 GGG-GRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238 (443)
Q Consensus 160 gGG-G~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE 238 (443)
+|+ |||+.++++.+|+.++|... ++.++++|+||+..+|+.|.+.++..|+++.++--+ .+|+++.-.--
T Consensus 150 ~GYDGKGq~~i~s~~dl~~a~~~l--------~~~~~i~E~~i~f~~ElSvivaR~~~G~~~~yP~~e-n~h~~gil~~s 220 (377)
T PRK06019 150 GGYDGKGQWVLRSEADLDAAWAAL--------GSGPCILEEFVPFEREVSVIVARGRDGEVVFYPLVE-NVHRNGILRTS 220 (377)
T ss_pred CCCCCCCCEEECCHHHHHHHHHHC--------CCCCEEEEEEECCEEEEEEEEEECCCCCEEEECCHH-CEEECCEEEEE
T ss_conf 461887018977888999999865--------699889996543518999999984899999944411-47777755899
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 03445588999999999999988651543410245897288349982276543320167886325620112322210222
Q gi|254780268|r 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRL 318 (443)
Q Consensus 239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l 318 (443)
.+||+ +++++.++++++|.+++++++|+|+..|||+++++++||+|+.||..-+=-.|-...-..=-+.++|.-+|.||
T Consensus 221 ~~Pa~-~~~~~~~~a~~ia~~i~~~l~~vGvl~VE~F~~~~~llvNEiAPRpHNSGH~Ti~~~~~SQFe~HlRAi~glpl 299 (377)
T PRK06019 221 IAPAP-ISADLQAQAEEIASRIAEELDYVGVLAVEFFVTGDGLLVNEIAPRVHNSGHWTIDACSTSQFEQHLRAIAGLPL 299 (377)
T ss_pred ECCCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 88999-99999999999999999974876249999999189389997258876875476423412489999999829988
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCC----CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHH
Q ss_conf 22113333201245330245662----21111244215886689984467776023877077768433899995599899
Q gi|254780268|r 319 SVQQKDITFSGHAIECRINAEDP----ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKE 394 (443)
Q Consensus 319 ~~~~~~i~~~g~aie~Ri~aEdp----~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~ 394 (443)
+.... ..-++-.-|-.++- ...+-.++ ..+++.+-+.+| .|- =++++-+.|+|.++
T Consensus 300 ~~~~~----~~pa~M~NilG~~~~~~~~~~~~~~~--~~~h~YgK~e~r------~gR--------KmGHit~~~~~~~~ 359 (377)
T PRK06019 300 GSTEL----LSPAVMVNLLGDDVEPDWDDLLALPG--AHLHWYGKAEAR------PGR--------KMGHVTVLGDDVEA 359 (377)
T ss_pred CCCCC----CCCEEEEEEECCCCCHHHHHHHHCCC--CEEEECCCCCCC------CCC--------CEEEEEEECCCHHH
T ss_conf 88544----47669999837753136999971999--889976898788------998--------26899983199999
Q ss_pred HHHHHHHHHHHCEECC
Q ss_conf 9999998765408826
Q gi|254780268|r 395 CMMRLNRALNEIIIDG 410 (443)
Q Consensus 395 Ai~~l~~aL~~~~I~G 410 (443)
+++++..+..-..+..
T Consensus 360 ~~~~~~~~~~~l~~~~ 375 (377)
T PRK06019 360 LLEKAEALAALLPIEY 375 (377)
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 9999999997658644
No 31
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase; InterPro: IPR005905 D-alanine--D-alanine ligase (6.3.2.4 from EC) is a bacterial enzyme involved in cell-wall biosynthesis. It participates in forming UDP-N-acetylmuramoyl pentapeptide, the peptidoglycan precursor. These enzymes are proteins of 300 to 360 amino acids containing many conserved regions. The N-terminal Gly-rich region could be involved in ATP-binding. This family of enzymes represent chromosomal versions of species not specifically resistant to glycopeptide antibiotics such as vancomycin. The mechanism of glycopeptide antibiotic resistance involves the production of D-alanine-D-lactate (VanA and VanB families) or D-alanine-D-serine (VanC). This model attempts to exclude the VanA/VanB and VanC subfamilies while capturing most other D-Ala-D-Ala ligases above the trusted cut-off. However, changes in small numbers of amino acids, as demonstrated crystallographically, can alter specificity. In chlamydial species, this enzyme is found as a fusion protein with UDP-N-acetylmuramate--alanine ligase. ; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=6.1e-36 Score=275.66 Aligned_cols=251 Identities=24% Similarity=0.385 Sum_probs=195.7
Q ss_pred HHHHHHHHHHC--------CCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC------------
Q ss_conf 99999988880--------9659998585577187767585799918998530006989999999870------------
Q gi|254780268|r 14 ALRILRACKEL--------GIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT------------ 73 (443)
Q Consensus 14 a~riira~~el--------Gi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~------------ 73 (443)
|..|.+++++. |+..+.|+-+. .-.++...-..+. |++..+.+...+.
T Consensus 20 a~~v~~aL~~~~~FIF~deg~~v~~~~~~~--~g~w~~~~~~~~~----------L~~~~~~~~~~~~~~~~~~~~~~~~ 87 (375)
T TIGR01205 20 AQAVLKALRSLLEFIFLDEGYDVYPVDIDK--QGSWVFSDAKTEA----------LVYKDLLQKLLEQGGPINLSSLAQV 87 (375)
T ss_pred HHHHHHHHHHCCCEEEEECCEEEEEEEECC--CCCEECCCCCCCC----------CCCCCHHHHHHHCCCCEECCCCCCC
T ss_conf 999999865208766531664899986226--7733003456555----------2111004677635897401466741
Q ss_pred ------------------CCCE----EECC-CCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCC
Q ss_conf ------------------9989----9458-5313109766688984592162689899987218998877664224433
Q gi|254780268|r 74 ------------------GADA----IHPG-YGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPV 130 (443)
Q Consensus 74 ------------------~~da----ihPG-yGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~ 130 (443)
.+|. +|.. || |+.+.+..++-+||+|+||...+=....||..+|++++++|||+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~D~vF~~LHG~~~G---EDGtiQGlLe~~gIPY~Gsgv~aSA~smDK~~tK~~~~~~Glp~ 164 (375)
T TIGR01205 88 SLLGESFLLEAESAEALEEIDVVFPVLHGPPYG---EDGTIQGLLELLGIPYTGSGVLASALSMDKLLTKLLLKSLGLPT 164 (375)
T ss_pred CCCCCCCCCCCCCCHHHCCCCEEEEEECCCCCC---CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 003556666644530204798899812185668---55528999997078703747899998742899999998757974
Q ss_pred CCCCCC--CCH---H--HHH--HHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEE-
Q ss_conf 243334--557---9--998--732003301220002345782168887506689999987543212589981688443-
Q gi|254780268|r 131 VPGSGE--VYP---H--TAM--PIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKY- 200 (443)
Q Consensus 131 ~p~~~~--~~~---~--ea~--~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~- 200 (443)
+||... .+. + +.. ...+.+|||++|||+..|||.||.+|.+++||+.+++.|+++ |.+|+||+|
T Consensus 165 ~~y~~l~~~~~~~~~~~~~~~~~~~~~lg~P~~VKPa~~GSSvG~~~V~~~~eL~~a~~~Af~~------d~~v~vE~~~ 238 (375)
T TIGR01205 165 PDYAVLRRKERSSEDEAECENVAVLEKLGFPVFVKPAREGSSVGISKVKSEEELEAALDEAFKY------DERVIVEEFK 238 (375)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHCC------CCEEEEEECC
T ss_conf 4704675045445613468999999836897899734677757789846778999999986155------9659998111
Q ss_pred --EEEEEECCEEEEEECCC-------CCCC------CCCCCCCC-CCC-CCEEEEECCCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf --42011033157773478-------7023------65665421-135-62255403445-5889999999999999886
Q gi|254780268|r 201 --LENPRHIEVQIFGDGMG-------NAIH------FGERDCSV-QRR-NQKIWEEAHSP-VISAQDRTEIGETCVKAMK 262 (443)
Q Consensus 201 --i~~~rhiEvqVl~D~~g-------~~v~------l~erdCSi-Qrr-~qkiiEeaPap-~l~~~~~~~i~~~A~~~~~ 262 (443)
|++ ||+||.||+++.+ +... |+++|+-- .-+ +|.+| ||+ .|+++..++|+++|.|+++
T Consensus 239 ~~i~g-rEl~v~~L~~~~~lp~~~~~~~~~~~g~~~FYDY~~KY~~~~g~~~~~---pa~~~L~~~~~~~i~~~a~~ay~ 314 (375)
T TIGR01205 239 QRIKG-RELEVSILGNEEALPIISIVPEIEPDGGSDFYDYEAKYLDGDGTEYVI---PAPAGLDEELEEKIKELALKAYK 314 (375)
T ss_pred CCCCC-CEEEEEEEECCCCCEEEECCCCCCCCCCCEECCHHHCCCCCCCCEEEE---CCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 47898-526898870797432454067535676760000211427788732651---56567888999999999999998
Q ss_pred HHCCCCCCEEEEEEC-C-CCEEEEECCCC
Q ss_conf 515434102458972-8-83499822765
Q gi|254780268|r 263 KIDYRGAGTIEFLYE-N-GQFYFIEMNTR 289 (443)
Q Consensus 263 ~~g~~g~~tvEFl~~-~-~~~yflEvN~R 289 (443)
+++|+|+++|||+++ + |++|+|||||=
T Consensus 315 ~~~~~G~~R~DFf~~~~~G~~yLnEiNT~ 343 (375)
T TIGR01205 315 ALGCRGLARVDFFLDKETGEIYLNEINTI 343 (375)
T ss_pred HCCCCCEEEEEEEEECCCCEEEEEEECCC
T ss_conf 40887448998998728886999987688
No 32
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=2.3e-33 Score=257.36 Aligned_cols=362 Identities=20% Similarity=0.229 Sum_probs=257.4
Q ss_pred ECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC-CCCEEECCCCHHH
Q ss_conf 447099999999888809659998585577187767585799918998530006989999999870-9989945853131
Q gi|254780268|r 8 ANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT-GADAIHPGYGFLS 86 (443)
Q Consensus 8 anrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~-~~daihPGyGfLs 86 (443)
.|--=...+.+++++++|+++|.+-.+|.+...-.....+.+.+. + -|.++|+..+.+. ++.+|.- .|
T Consensus 10 sNTTGTG~l~lk~A~~lG~~pv~LT~dP~rY~~L~~~~~evI~vD------T-~d~dal~~~v~~~~~IaGV~s----~s 78 (892)
T PRK02186 10 SNTTGTGELLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISAD------T-SDPDRIHRFVSSLDGVAGIMS----SS 78 (892)
T ss_pred ECCCCHHHHHHHHHHHCCCEEEEEECCHHHCHHHHHCCCEEEEEC------C-CCHHHHHHHHHCCCCCCEEEE----CC
T ss_conf 078772799999999749855898368343524675176599936------9-999999999742368526987----40
Q ss_pred CC--HHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCC
Q ss_conf 09--7666889845921626898999872189988776642244332433345579998732003301220002345782
Q gi|254780268|r 87 EN--AKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGR 164 (443)
Q Consensus 87 En--~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~ 164 (443)
|- ..-++.++..|++ ||++++++.+.||..+|+.+.++|||++.+..+.+.+++..++++||||+||||+.+.||.
T Consensus 79 Dyyl~~AA~LA~~LGLP--Gp~peAV~~cRdK~~~Rq~L~~aGVp~P~~~lv~~~~e~~~aAa~IGfPvVVKP~dgSGS~ 156 (892)
T PRK02186 79 EYFIEVASEVARRLGLP--AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALDAVALDALDGLTYPVVVKPRMGSGSV 156 (892)
T ss_pred HHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 54499999999981989--9899999998719999999996699999568835887899999847999897168888776
Q ss_pred EEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCC-CCCCCCCCCCCCCCCCCEEEEE---C
Q ss_conf 16888750668999998754321258998168844342011033157773478-7023656654211356225540---3
Q gi|254780268|r 165 GMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMG-NAIHFGERDCSVQRRNQKIWEE---A 240 (443)
Q Consensus 165 Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g-~~v~l~erdCSiQrr~qkiiEe---a 240 (443)
|+++|++.+|+.++++...+. ....+|||+|++|+ |+.|..+...-+ .++-+..++- ...+.-||. .
T Consensus 157 GVrLc~s~aEL~e~~~~l~~~-----r~~~vLVEEFieGp-EYSVEt~s~~G~~~VIGIT~K~l---~~~P~FVE~GH~f 227 (892)
T PRK02186 157 GVRLCASVAEAAAHCAALRRA-----GTRAALVQAYVEGD-EYSVETLTVARGHQVLGITRKHL---GPPPHFVEIGHDF 227 (892)
T ss_pred CEEEECCHHHHHHHHHHHHHC-----CCCCEEEEECCCCC-EEEEEEEEECCCEEEEEEEEEEC---CCCCEEEEECCCC
T ss_conf 858768999999999999715-----48866999715688-78999999779679999986533---8997178706767
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEECCCCEEEEECCCCCCCCC-H-HHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 445588999999999999988651543-410245897288349982276543320-1-6788632562011232221022
Q gi|254780268|r 241 HSPVISAQDRTEIGETCVKAMKKIDYR-GAGTIEFLYENGQFYFIEMNTRLQVEH-P-VTEAITGIDLVHEQIYVASENR 317 (443)
Q Consensus 241 Pap~l~~~~~~~i~~~A~~~~~~~g~~-g~~tvEFl~~~~~~yflEvN~Rlqveh-~-vte~~tgvdlv~~~~~~a~g~~ 317 (443)
|+| |+++..++|.+++.+..+++||. |..++||.+.++.++++||||||-=-+ | ..|++|||||....|++-+|.+
T Consensus 228 PAp-L~~~~~~~I~d~v~raL~AlGl~~GpAHTEvklT~~GPvVIEINPRLAGGmIP~Lve~A~GvDll~~~~~~~~g~~ 306 (892)
T PRK02186 228 PAP-LSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDTVVIIEINPRLAGGMIPVLLEEAFGVDLLDHVIDLHLGVA 306 (892)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 899-9858999999999999997086668832899993897389997885446765899988718418999999863877
Q ss_pred CCCCCCCCCCCHHH-HHHHCCCCCCCCCCCCCCCEEEEECC-----CCCCEEEECCC-CCCCEECCCCC--CCEEEEEEE
Q ss_conf 22211333320124-53302456622111124421588668-----99844677760-23877077768--433899995
Q gi|254780268|r 318 LSVQQKDITFSGHA-IECRINAEDPENFIPNPGEITYFHAP-----GGLGIRMDSAS-YQGYTVPSYYD--SLIAKLIVH 388 (443)
Q Consensus 318 l~~~~~~i~~~g~a-ie~Ri~aEdp~~f~Ps~G~i~~~~~p-----~~~gvRvDt~~-~~G~~i~~~yD--smlaKiI~~ 388 (443)
-.. ++.+++|+ |.+++-+. .|++....++ .++-+|-...+ .+|+.+.+..| --+|-+|+.
T Consensus 307 ~~~---~~~~~~~~ai~f~~p~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gdf~dr~~~vi~~ 375 (892)
T PRK02186 307 AFA---DPTAKRYGAIRFVLPAR--------SGVLRGPLALPADRAARPELRHFHPIKQPGDALRLEGDFRDRIAAVVCA 375 (892)
T ss_pred CCC---CCCCCCCCEEEEEECCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 778---97500123168984565--------5520466567410136753102466589986424477766543633103
Q ss_pred CCCHHHH---HHHHHHHH
Q ss_conf 5998999---99999876
Q gi|254780268|r 389 GKNRKEC---MMRLNRAL 403 (443)
Q Consensus 389 g~~R~~A---i~~l~~aL 403 (443)
|.+++.+ ..++.+.|
T Consensus 376 ~~~~~~~~~~~~~~~~~l 393 (892)
T PRK02186 376 GDHRDSVAAAAERAVAGL 393 (892)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 788778998888776676
No 33
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=100.00 E-value=8.5e-35 Score=267.51 Aligned_cols=246 Identities=23% Similarity=0.362 Sum_probs=199.3
Q ss_pred CCEEEEEECCCHH---------HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHH
Q ss_conf 9706866447099---------9999998888096599985855771877675857999189985300069899999998
Q gi|254780268|r 1 MISKILIANRGEI---------ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACE 71 (443)
Q Consensus 1 m~~~iLianrGei---------a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~ 71 (443)
|.+||.|.-=|.- |..+.+++++.|++++.+..+.| .+...+
T Consensus 3 ~~~kI~vl~GG~S~E~eVSl~S~~~v~~aL~~~~y~v~~id~~~~-----------------------------~~~~l~ 53 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGED-----------------------------PAAELK 53 (304)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-----------------------------HHHHHH
T ss_conf 777189993678712899999999999988375997999828964-----------------------------677875
Q ss_pred HCCCCE----EECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 709989----9458531310976668898459216268989998721899887766422443324333455799987320
Q gi|254780268|r 72 VTGADA----IHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAK 147 (443)
Q Consensus 72 ~~~~da----ihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~ 147 (443)
+.+.|. +|.+|| |+..+...|+..||+|+|+++.+..++.||..+|++++++||||+||......+......+
T Consensus 54 ~~~~D~vf~~lHG~~G---EDG~iQglLe~~~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~~~~~~ 130 (304)
T PRK01372 54 ELGFDRVFNALHGRGG---EDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTAPWVVLTRAEDLLAAID 130 (304)
T ss_pred HCCCCEEEEECCCCCC---CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHH
T ss_conf 3399999990689998---5649999999859983579989987765389999999986999898499865313999987
Q ss_pred CCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCC-
Q ss_conf 0330122000234578216888750668999998754321258998168844342011033157773478702365665-
Q gi|254780268|r 148 EIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERD- 226 (443)
Q Consensus 148 ~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erd- 226 (443)
++|||++|||+.+|+|.|+.+|++.+||.++++.+.++ |+.+|||+||+| ||++|.|++|. +.+..|-.
T Consensus 131 ~l~~P~iVKP~~~GSSiGv~~V~~~~el~~ai~~a~~~------~~~vLvE~~I~G-rEitv~Vlg~~---~lp~~eI~~ 200 (304)
T PRK01372 131 KLGLPLVVKPAREGSSVGVTKVKEADELPAALELAFKY------DDEVLVEKYIKG-RELTVAVLGGK---ALPVIRIVP 200 (304)
T ss_pred HHCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHC------CCCCEEEEEECC-EEEEEEEECCC---CCCEEEEEC
T ss_conf 61898799766888666538966988999999998744------886254502565-69999998997---775389945
Q ss_pred ----CCCCCCC--CEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCC
Q ss_conf ----4211356--22554034455889999999999999886515434102458972-883499822765
Q gi|254780268|r 227 ----CSVQRRN--QKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTR 289 (443)
Q Consensus 227 ----CSiQrr~--qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~R 289 (443)
.+.+..+ .+-.++.||+ |++++.+++++.|.++++++||+|+++|||+++ +|++||||+||=
T Consensus 201 ~~~fyDy~aKY~~~~s~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~g~aRvDf~~~~~g~~~~lEiNt~ 269 (304)
T PRK01372 201 PGEFYDYEAKYLAGDTQYLCPAG-LPAELEAELQALALRAYKALGCRGWGRVDFMLDEDGKPYLLEVNTS 269 (304)
T ss_pred CCCCCCHHHCCCCCCCCEECCCC-CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEECCC
T ss_conf 99875776612557741100689-9999999999999999998499736988999907997899983399
No 34
>KOG0370 consensus
Probab=100.00 E-value=2.4e-35 Score=271.37 Aligned_cols=356 Identities=21% Similarity=0.325 Sum_probs=277.0
Q ss_pred EEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHH
Q ss_conf 6866447099-----------99999988880965999858557718776758579991899853000698999999987
Q gi|254780268|r 4 KILIANRGEI-----------ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEV 72 (443)
Q Consensus 4 ~iLianrGei-----------a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~ 72 (443)
-++|-+.|.- |+..+|++|.+|++||+||-+|++.|++..++|.+|+-. +..+.++++-..
T Consensus 920 g~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~g~kTimvNyNPETVSTDyDecdrLYFee--------is~E~vmDiYe~ 991 (1435)
T KOG0370 920 GVMVLGSGVYRIGSSVEFDWCAVGCARTLRKLGKKTIMVNYNPETVSTDYDECDRLYFEE--------ISYERVMDIYEL 991 (1435)
T ss_pred CEEEECCCCEECCCCEEECHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHH--------HHHHHHHHHHHH
T ss_conf 659972432563562055133554799999709846999568654357567776676754--------236653435543
Q ss_pred CCCCEEE---CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 0998994---5853131097666889845921626898999872189988776642244332433345579998732003
Q gi|254780268|r 73 TGADAIH---PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEI 149 (443)
Q Consensus 73 ~~~daih---PGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~i 149 (443)
.++.++. .|+ |..| .|-.+.++|.+++|.||+.|+.++|+.+|-+++.+.||..++|....+.+++..|++++
T Consensus 992 E~~~G~iis~GGQ--~pnN--iA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wkelt~~~eA~~F~~~V 1067 (1435)
T KOG0370 992 ENSEGIIISVGGQ--LPNN--IALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKELTSLEEAKKFAEKV 1067 (1435)
T ss_pred CCCCCEEEEECCC--CCCH--HHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHC
T ss_conf 0677269983684--8620--21375862886754885761114567789998877278861023322688999999865
Q ss_pred CCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEE-ECCCCCC--CCCCC-
Q ss_conf 3012200023457821688875066899999875432125899816884434201103315777-3478702--36566-
Q gi|254780268|r 150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFG-DGMGNAI--HFGER- 225 (443)
Q Consensus 150 GyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~-D~~g~~v--~l~er- 225 (443)
|||++++|++..+|-.|.+|++++||+..+++|...+ .|.+|.+-|||+++|||||+.++ || +++ ++.|.
T Consensus 1068 gYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs----~dhPVVisKfie~AkEidvDAVa~~G--~~~~haiSEHv 1141 (1435)
T KOG0370 1068 GYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVS----PDHPVVISKFIEGAKEIDVDAVASDG--KVLVHAISEHV 1141 (1435)
T ss_pred CCCEEECCCCEECCHHHHHHHCHHHHHHHHHHHHHCC----CCCCEEHHHHHCCCCEECHHHHCCCC--EEEEEEHHHHH
T ss_conf 9966851101331015552104788999999776408----77977727754445010312310478--18998623341
Q ss_pred --------CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHH
Q ss_conf --------542113562255403445588999999999999988651543410245897288349982276543320167
Q gi|254780268|r 226 --------DCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVT 297 (443)
Q Consensus 226 --------dCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vt 297 (443)
|.+ + ..|++.|+++..+++.+.+.++++++...|..|+||+.+++++-++|.|-|.++..|+.
T Consensus 1142 EnAGVHSGDAt-------l--v~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k~n~lkVIECN~RaSRSFPFv 1212 (1435)
T KOG0370 1142 ENAGVHSGDAT-------L--VLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAKDNELKVIECNVRASRSFPFV 1212 (1435)
T ss_pred HCCCCCCCCEE-------E--ECCCHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEEEEEEECCCCCE
T ss_conf 12465578603-------7--57811249889999999999998886166874379995498078999640343366630
Q ss_pred HHHHCCCCHHHHHHHHHCCCCCCCCCCC------CCCHHHHHHHCCCCCCC-C-CCCCCCCEEEEECCCCCCEEEECC--
Q ss_conf 8863256201123222102222211333------32012453302456622-1-111244215886689984467776--
Q gi|254780268|r 298 EAITGIDLVHEQIYVASENRLSVQQKDI------TFSGHAIECRINAEDPE-N-FIPNPGEITYFHAPGGLGIRMDSA-- 367 (443)
Q Consensus 298 e~~tgvdlv~~~~~~a~g~~l~~~~~~i------~~~g~aie~Ri~aEdp~-~-f~Ps~G~i~~~~~p~~~gvRvDt~-- 367 (443)
+++-|+|++..+.+...|.++....... ..-.+|+ -|+-.-||- + -+-|+|.+..|-. -|.+.+
T Consensus 1213 SKtlgvdfi~~At~~i~g~~~~~~~~~~~dyV~vKvPqFSf-~RLagADp~LgvEMaSTGEVAcFG~-----~~~eaylk 1286 (1435)
T KOG0370 1213 SKTLGVDFIALATRAIMGVPVPPDLLLHPDYVAVKVPQFSF-SRLAGADPVLGVEMASTGEVACFGE-----DRYEAYLK 1286 (1435)
T ss_pred EHHCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCC-CCCCCCCCEEEEEECCCCCEEECCC-----CHHHHHHH
T ss_conf 01058319999889973897887535578868997465454-0004898634567515551344265-----26999999
Q ss_pred --CCCCCEECCCCCCCEEEEEEECCCHHHHHH
Q ss_conf --023877077768433899995599899999
Q gi|254780268|r 368 --SYQGYTVPSYYDSLIAKLIVHGKNRKECMM 397 (443)
Q Consensus 368 --~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~ 397 (443)
..+|..+ |.=.-+|..|..|.+-+.
T Consensus 1287 am~sTgF~i-----Pk~~i~i~ig~~k~ell~ 1313 (1435)
T KOG0370 1287 AMLSTGFKI-----PKKNILISIGSYKPELLP 1313 (1435)
T ss_pred HHHHCCCCC-----CCCCEEEEECCCHHHHHH
T ss_conf 998537634-----688717883464588889
No 35
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.9e-32 Score=250.76 Aligned_cols=366 Identities=20% Similarity=0.287 Sum_probs=278.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf 06866447099999999888809659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY 82 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy 82 (443)
+|+|.-+.||....+.=.|++||+++|+|...+|.-+++ .||.+|.+ +.||.++|-.+.++.+.|.|.|-.
T Consensus 13 ~kvmLLGSGELGKEvaIe~QRLG~eVIAVDrY~~APAmq--VAhrs~Vi-------~MlD~~al~avv~re~Pd~IVpEi 83 (394)
T COG0027 13 TKVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQ--VAHRSYVI-------DMLDGDALRAVVEREKPDYIVPEI 83 (394)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHH--HHHHEEEE-------ECCCHHHHHHHHHHHCCCEEEEHH
T ss_conf 489996388644699998886387799963768980664--21111345-------456999999999865898133135
Q ss_pred CHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf 31310976668898459216268989998721899887766-42244332433345579998732003301220002345
Q gi|254780268|r 83 GFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTA-QQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGG 161 (443)
Q Consensus 83 GfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a-~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gG 161 (443)
-..+- +---.+|++|...| |++++.+.+.|+..-|+++ +++|+||.++....+.++..+.+++||||+++||..+.
T Consensus 84 EAI~t--d~L~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfPcvvKPvMSS 160 (394)
T COG0027 84 EAIAT--DALVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSS 160 (394)
T ss_pred HHHHH--HHHHHHHHCCCEEC-CCHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCC
T ss_conf 66647--88999986796675-5327777342689899988997299976632135599999999974997021332026
Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEE--E--ECCC-CCCCCCCCC------CCCC
Q ss_conf 782168887506689999987543212589981688443420110331577--7--3478-702365665------4211
Q gi|254780268|r 162 GGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIF--G--DGMG-NAIHFGERD------CSVQ 230 (443)
Q Consensus 162 GG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl--~--D~~g-~~v~l~erd------CSiQ 230 (443)
+|+|.++|++++|++++|+.|+.-+.. ++++|++|.||+.- +|+.+| + |+.+ -|-++|.|+ -|+|
T Consensus 161 SGkGqsvv~~~e~ve~AW~~A~~g~R~--~~~RVIVE~fv~fd--~EITlLtvr~~~~~~~Fc~PIGHrq~dgdY~ESWQ 236 (394)
T COG0027 161 SGKGQSVVRSPEDVEKAWEYAQQGGRG--GSGRVIVEEFVKFD--FEITLLTVRAVDGTGSFCAPIGHRQEDGDYRESWQ 236 (394)
T ss_pred CCCCCEEECCHHHHHHHHHHHHHCCCC--CCCCEEEEEEECCE--EEEEEEEEEEECCCCCCCCCCCCCCCCCCHHCCCC
T ss_conf 889821435987889999999754788--88718999873232--79999999975588776777664057887010368
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHH
Q ss_conf 35622554034455889999999999999886515434102458972883499822765433201678863256201123
Q gi|254780268|r 231 RRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQI 310 (443)
Q Consensus 231 rr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~ 310 (443)
|. .+++...++.+..|.++..++|-.|+.-||+++..+++||.||.||=.=+--||=-...+.--++++
T Consensus 237 ----------P~-~mS~~al~~A~~IA~~vt~aLGG~GlFGVElfv~gDeV~FsEVSPRPHDTGmVTLiSq~lsEF~LH~ 305 (394)
T COG0027 237 ----------PQ-EMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGDEVIFSEVSPRPHDTGMVTLISQDLSEFALHV 305 (394)
T ss_pred ----------CC-CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCHHHHHHH
T ss_conf ----------41-0389999999999999998605863036899972887898525789888724999706531899999
Q ss_pred HHHHCCCCC-CCCCCCCC-CHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCC--CCCCEECCCCCCCEEEEE
Q ss_conf 222102222-21133332-01245330245662211112442158866899844677760--238770777684338999
Q gi|254780268|r 311 YVASENRLS-VQQKDITF-SGHAIECRINAEDPENFIPNPGEITYFHAPGGLGIRMDSAS--YQGYTVPSYYDSLIAKLI 386 (443)
Q Consensus 311 ~~a~g~~l~-~~~~~i~~-~g~aie~Ri~aEdp~~f~Ps~G~i~~~~~p~~~gvRvDt~~--~~G~~i~~~yDsmlaKiI 386 (443)
+..+|.|.+ .+| ++| ..|.|-+-..+.+|. -.|.-..+..|. ..||+-+-- +.+ --++-..
T Consensus 306 RAiLGLPi~~i~~--~~P~AS~vI~~~~~~~~~~----f~~l~~AL~~p~-t~vRlFGKP~~~~~--------RRmGVaL 370 (394)
T COG0027 306 RAILGLPIPEIRQ--ISPAASAVILAQETSQAPT----FDGLAEALGVPD-TQVRLFGKPEADGG--------RRLGVAL 370 (394)
T ss_pred HHHHCCCCCCEEE--ECCCCCCEEECCCCCCCCC----HHHHHHHHCCCC-CEEEEECCCCCCCC--------CEEEEEE
T ss_conf 9995897642145--2543001560333346775----222888745898-61798068756667--------5046898
Q ss_pred EECCCHHHHHHHHHHHHHHCEECC
Q ss_conf 955998999999998765408826
Q gi|254780268|r 387 VHGKNRKECMMRLNRALNEIIIDG 410 (443)
Q Consensus 387 ~~g~~R~~Ai~~l~~aL~~~~I~G 410 (443)
+++++-++|+.|++.+.+...|.+
T Consensus 371 A~a~~Ve~Are~A~~aa~~i~v~~ 394 (394)
T COG0027 371 ATAESVEEARERARKAASAIEVKG 394 (394)
T ss_pred ECCCCHHHHHHHHHHHHHHEECCC
T ss_conf 427619999999998876055689
No 36
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=100.00 E-value=7.7e-36 Score=274.91 Aligned_cols=109 Identities=62% Similarity=0.958 Sum_probs=107.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf 70686644709999999988880965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r 2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG 81 (443)
Q Consensus 2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG 81 (443)
|||||||||||||+|++||||+||++||+|||++|++|+|+++||++|++++++..++|||++.|+++|+++++|+||||
T Consensus 1 i~kvLIanrGeiA~ri~rt~re~gi~~v~i~s~~d~~s~~~~~ad~~~~~~~~~~~~~Yl~~~~Ii~ia~~~~~~aihpG 80 (109)
T pfam00289 1 IKKVLVANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPGPASESYLNIERILDIAEKEGADAIHPG 80 (109)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEECC
T ss_conf 94899988879999999999986997999963344152256650576534799832111379999999998188968779
Q ss_pred CCHHHCCHHHHHHHHHCCCEEECCCHHHH
Q ss_conf 53131097666889845921626898999
Q gi|254780268|r 82 YGFLSENAKFAEILEDHHIKFIGPSSEHI 110 (443)
Q Consensus 82 yGfLsEn~~fa~~~e~~Gi~fIGPs~~ai 110 (443)
|||||||++|++.|+++|++||||++++|
T Consensus 81 yGflsEn~~fa~~~~~~Gi~fiGPs~~~i 109 (109)
T pfam00289 81 YGFLSENAEFAEACEKAGITFIGPSPEAI 109 (109)
T ss_pred CCCCCCCHHHHHHHHHCCCEEECCCHHHC
T ss_conf 76233599999999988898999583549
No 37
>pfam02785 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=100.00 E-value=4.1e-36 Score=276.87 Aligned_cols=106 Identities=51% Similarity=0.925 Sum_probs=104.6
Q ss_pred HHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECCC
Q ss_conf 330245662-2111124421588668998446777602387707776843389999559989999999987654088263
Q gi|254780268|r 333 ECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGI 411 (443)
Q Consensus 333 e~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv 411 (443)
||||||||| +||+|++|+|+.|++|+++|||+|+++++|++|+++|||||||||+||+||++|++||.+||+++.|.|+
T Consensus 1 e~Ri~AEdp~~~F~P~~G~i~~~~~p~g~gvRvDt~v~~G~~v~~~YDsmlAKvI~~g~~R~~Ai~kl~~aL~~~~I~Gv 80 (107)
T pfam02785 1 EARIYAEDPANGFLPSPGKITRYRFPGGPGVRVDSGVYEGDEVSPYYDSMIAKLIVHGPDREEAIARLRRALAETRIEGV 80 (107)
T ss_pred CCEEEEECCCCCCCCCCEEEEEEECCCCCCEEEECCEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCC
T ss_conf 97897254999912698886899879999989874851598358440369999997089999999999999997650685
Q ss_pred CCCHHHHHHHHCCHHHHCCCCCHHHHH
Q ss_conf 778889998968988955886531687
Q gi|254780268|r 412 KTTIPLFQKLIKNEDIIEGNYDIHWLE 438 (443)
Q Consensus 412 ~TN~~~l~~il~~~~f~~g~~~T~fi~ 438 (443)
+||++||++||++|+|++|+++|+|||
T Consensus 81 ~TN~~~l~~il~~~~f~~g~~~T~fld 107 (107)
T pfam02785 81 KTNIPFLRAILEHPDFRAGEVDTGFLE 107 (107)
T ss_pred CCCHHHHHHHHCCHHHCCCCCCCCCCC
T ss_conf 644999999977831336996133609
No 38
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=100.00 E-value=3.3e-32 Score=249.15 Aligned_cols=275 Identities=21% Similarity=0.283 Sum_probs=196.0
Q ss_pred CEEEEEECCC-----HH----HHHHHHHHHHCCCEEEEECCCHHHCCC-------CHHHCCEEEECCCCCCCCHHCCHHH
Q ss_conf 7068664470-----99----999999888809659998585577187-------7675857999189985300069899
Q gi|254780268|r 2 ISKILIANRG-----EI----ALRILRACKELGIPTVAVHSTADSGAM-------HVRLADESVCIGPPSSKDSYLNIQQ 65 (443)
Q Consensus 2 ~~~iLianrG-----ei----a~riira~~elGi~tv~v~s~~D~~a~-------~~~~ADe~~~i~~~~~~~sYldi~~ 65 (443)
-+||.|.-=| || |..|.+++++.|++++.+|-+.|..-. .....+....... ...........
T Consensus 3 k~kI~Vl~GG~S~EreVSl~Sg~~v~~~L~~~~y~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 81 (344)
T PRK01966 3 KIRVALLFGGRSAEHEVSLVSAKNILKALDKDKFEVIPIGIDKDGRWYLIDGSNMELNSDDPLRIEEK-KSAELLLALPG 81 (344)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCHHHCCCCCCCCCCCC-CCCCCCCCCCC
T ss_conf 76899995878821899999999999976150885999998379887725641111024542101234-44322234553
Q ss_pred HHHHHHHCCCC----EEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCH--
Q ss_conf 99999870998----994585313109766688984592162689899987218998877664224433243334557--
Q gi|254780268|r 66 IVAACEVTGAD----AIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYP-- 139 (443)
Q Consensus 66 ii~~a~~~~~d----aihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~-- 139 (443)
...-.+...+| ++|.+|| ||..+...|+..||+|.|+++.+..++.||..+|++++++||||+||......
T Consensus 82 ~~~~~~~~~~D~vf~alHG~~G---EDG~iQglLe~l~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~ 158 (344)
T PRK01966 82 FYEGQLIIEVDVVFPVLHGPPG---EDGTIQGLLELLNIPYVGCGVLASAVSMDKILTKRLLAAAGIPQAPYVVLTRSRR 158 (344)
T ss_pred CCCCCCCCCCCEEEEECCCCCC---CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 2210003567899990689997---6709999999759993688489999876699999999987999898399816662
Q ss_pred -HHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCC
Q ss_conf -9998732003301220002345782168887506689999987543212589981688443420110331577734787
Q gi|254780268|r 140 -HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGN 218 (443)
Q Consensus 140 -~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~ 218 (443)
........+++||++|||+.+|+|.|+.+|++.+||.++++.+.++ +..+|||+||+| ||+.|-|++.. +.
T Consensus 159 ~~~~~~~~~~l~~P~iVKP~~~GSSiGvs~v~~~~el~~ai~~a~~~------~~~vlvEefI~G-rE~tv~vl~~~-~~ 230 (344)
T PRK01966 159 EEAIAEVEEKLGLPVFVKPANLGSSVGISKVKNEEELEAALDLAFEY------DRKVLVEQGIKG-REIECAVLGYN-DE 230 (344)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHC------CCCCEEECCCCC-EEEEEEEECCC-CC
T ss_conf 34589999861898799328996343259968999999999999863------975057512444-89999997489-94
Q ss_pred CCCCC--CCC-----CCCCCCCC---EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECC
Q ss_conf 02365--665-----42113562---2554034455889999999999999886515434102458972-8834998227
Q gi|254780268|r 219 AIHFG--ERD-----CSVQRRNQ---KIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMN 287 (443)
Q Consensus 219 ~v~l~--erd-----CSiQrr~q---kiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN 287 (443)
...+. |-. -+.+..++ +.-++.|| .+++++.++++++|.++++++||+|+++|+|++| +|++||||+|
T Consensus 231 ~~~l~~~Ei~~~~~fydy~~KY~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~~lg~rg~~RiDf~~d~~g~~y~lEvN 309 (344)
T PRK01966 231 PVASVPGEIVKDNDFYDYEAKYIDDSGATLVIPA-DLSEELTEQIRELAIKAFKALGCSGLARVDFFLTEDGEIYLNEIN 309 (344)
T ss_pred EEEECCEEECCCCCCCCHHHCCCCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEEE
T ss_conf 6773115871798751488810468971696678-899999999999999999981997279898999089988999820
Q ss_pred CC
Q ss_conf 65
Q gi|254780268|r 288 TR 289 (443)
Q Consensus 288 ~R 289 (443)
|=
T Consensus 310 t~ 311 (344)
T PRK01966 310 TL 311 (344)
T ss_pred CC
T ss_conf 89
No 39
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=100.00 E-value=6.2e-35 Score=268.49 Aligned_cols=106 Identities=56% Similarity=1.054 Sum_probs=104.5
Q ss_pred HHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECCC
Q ss_conf 330245662-2111124421588668998446777602387707776843389999559989999999987654088263
Q gi|254780268|r 333 ECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGI 411 (443)
Q Consensus 333 e~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv 411 (443)
||||||||| ++|+|++|+|+.|++|+++|||+|+|+++|++||++|||||||||+||+||++|++||.+||+++.|.|+
T Consensus 1 E~Ri~AEdp~~~F~P~~G~i~~~~~p~~~gvRvDt~~~~G~~vs~~YDpmiAKlI~~g~~R~~Ai~~l~~aL~~~~i~Gi 80 (107)
T smart00878 1 ECRINAEDPANGFLPSPGRITRYRFPGGPGVRVDSGVYEGYEVPPYYDSMIAKLIVHGETREEAIARLRRALDEFRIEGV 80 (107)
T ss_pred CCEEEEECCCCCEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCEECCC
T ss_conf 93997465999901698896899858999889985431788458540269999998076699999999998862675173
Q ss_pred CCCHHHHHHHHCCHHHHCCCCCHHHHH
Q ss_conf 778889998968988955886531687
Q gi|254780268|r 412 KTTIPLFQKLIKNEDIIEGNYDIHWLE 438 (443)
Q Consensus 412 ~TN~~~l~~il~~~~f~~g~~~T~fi~ 438 (443)
+||++||++||++++|++|+++|+|||
T Consensus 81 ~TN~~~L~~il~~~~f~~g~~~T~~ld 107 (107)
T smart00878 81 KTNIPFLRALLRHPDFRAGDVDTGFLE 107 (107)
T ss_pred CCCHHHHHHHHCCHHHCCCCCCCCCCC
T ss_conf 644999999978830236996044619
No 40
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit; InterPro: IPR005875 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This family represents PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, which catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. PurK belongs to the ATP grasp superfamily of C-N ligase enzymes. Each subunit of PurK is composed of three domains (A, B, and C). The B domain contains a flexible, glycine-rich loop (B loop, T123-G130) that is disordered in the sulphate-PurK structure and becomes ordered in the MgADP-PurK structure. MgADP is wedged between the B and C domains, as with all members of the ATP grasp superfamily. Other enzymes in this superfamily contain a conserved Omega loop proposed to interact with the B loop, define the specificity of their nonnucleotide substrate, and protect the acyl phosphate intermediate formed from this substrate. PurK contains a minimal Omega loop without conserved residues. In the reaction catalyzed by PurK, carboxyphosphate is the putative acyl phosphate intermediate. The sulphate of the sulphate ion-liganded PurK interacts electrostatically with Arg 242 and the backbone amide group of Asn 245, components of the J loop of the C domain. This sulphate may reveal the location of the carboxyphosphate binding site. Conserved residues within the C-terminus of the C domain define a pocket that is proposed to bind AIR in collaboration with an N-terminal strand loop helix motif in the A domain (P loop, G8-L1). The P loop is proposed to bind the phosphate of AIR on the basis of similar binding sites observed in PurN and PurE and proposed in PurD and PurT, four other enzymes in the purine pathway .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=100.00 E-value=2.9e-31 Score=242.39 Aligned_cols=263 Identities=26% Similarity=0.387 Sum_probs=225.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCC--EEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf 6866447099999999888809659998585577187767585--79991899853000698999999987099899458
Q gi|254780268|r 4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLAD--ESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG 81 (443)
Q Consensus 4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~AD--e~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG 81 (443)
+|=|.+-|.-|-=+..+++.||+++.++ +++.++|..+.|| +.+.. +|.|.++|-+.|+.|++-..
T Consensus 1 ~vGilGGGQLG~M~~~aA~~LG~~~~VL--~~~~~~PA~q~Ad~~~~v~a-------~~~d~~~i~~La~~cDviT~--- 68 (386)
T TIGR01161 1 TVGILGGGQLGRMLALAAKKLGIKVAVL--DPDANSPAKQVADSREHVLA-------SFTDPEAIRELAEACDVITF--- 68 (386)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCEEEEE--CCCCCCCCCCCCCCCCEEEE-------EECCHHHHHHHHHHCCEEEE---
T ss_conf 9689718848999999871279589985--48989731112898557998-------51487899999976565543---
Q ss_pred CCHHHCCHH--HHHHHHHCC--CEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC--CHHHHHHHHHCCCCHHHH
Q ss_conf 531310976--668898459--21626898999872189988776642244332433345--579998732003301220
Q gi|254780268|r 82 YGFLSENAK--FAEILEDHH--IKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV--YPHTAMPIAKEIGFPVLV 155 (443)
Q Consensus 82 yGfLsEn~~--fa~~~e~~G--i~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~--~~~ea~~~a~~iGyPvii 155 (443)
=-|+-+ .=+.|+..| +++. |+++++....||...|++++++|+||+||.... +.++.....+++|||+||
T Consensus 69 ---E~Ehv~~~~L~~L~~~g~~~~~~-P~~~~l~~~~dk~~qK~~L~~~g~~vp~f~~~~~~~~~~~~~~~~~~g~p~Vl 144 (386)
T TIGR01161 69 ---EFEHVDVEALEKLEARGDKVKVR-PSPEALAIIQDKLTQKQFLQKLGLPVPPFVVIEIKDEEELDSALQELGFPVVL 144 (386)
T ss_pred ---EECCCCCHHHHHHHHCCCEEEEE-CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHCCCCEEE
T ss_conf ---10137856789998359847760-38899998836589999999668998841202236842578999873984799
Q ss_pred HCCCCCC-CCEEEEEEECHHHHHHHHHHHHHHHCCCCCC--CEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 0023457-8216888750668999998754321258998--168844342011033157773478702365665421135
Q gi|254780268|r 156 KASAGGG-GRGMRIAYSENDLSEAIDQARSEALAAFGND--AVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRR 232 (443)
Q Consensus 156 Kp~~gGG-G~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~--~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr 232 (443)
|...||+ |||.+++++++|+..+++. +++. .+++|+||+.-+|+.|-|.|+..|....++--+ ++|+.
T Consensus 145 K~~~gGYDGrGq~~i~~~~~~~~~~~~--------~~~~~~~~~~E~fV~F~~Elsv~vaR~~~G~~~~YP~ve-n~~~d 215 (386)
T TIGR01161 145 KARRGGYDGRGQFVIKSEADLPQALKE--------LGDKEEELIVEEFVPFERELSVIVARSADGEIAFYPVVE-NIHQD 215 (386)
T ss_pred EEEECCCCCCCCEEECCHHHHHHHHHH--------CCCCCEEEEEEECCCCCEEEEEEEEECCCCCEEECCCEE-EEEEC
T ss_conf 842065277310897474328899985--------288840589852356200699999977897488828612-35652
Q ss_pred --CCEEEEECCCCCCCHHH---HHHHHHHHHHHHHHHCCCCCCEEE-EEE--CCC----CEEEEECCCCCC
Q ss_conf --62255403445588999---999999999988651543410245-897--288----349982276543
Q gi|254780268|r 233 --NQKIWEEAHSPVISAQD---RTEIGETCVKAMKKIDYRGAGTIE-FLY--ENG----QFYFIEMNTRLQ 291 (443)
Q Consensus 233 --~qkiiEeaPap~l~~~~---~~~i~~~A~~~~~~~g~~g~~tvE-Fl~--~~~----~~yflEvN~Rlq 291 (443)
+=-..=.+|||.+++.. .++++++|.++++.+||+|+.+|| |++ .+| ++.+||+.||..
T Consensus 216 dagIl~~~~aPAPa~p~~~~Q~~~~A~~~A~~~~~~L~~VG~~avE~F~~Pa~dGP~P~~LLvNElAPR~H 286 (386)
T TIGR01161 216 DAGILRLVVAPAPAVPDALVQQQKKAQELARRLAEELDYVGVLAVEMFLLPAKDGPEPDELLVNELAPRPH 286 (386)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEEEECCCCC
T ss_conf 77877898633777834578999999999999998619617888999830688789512056610257889
No 41
>PRK07206 hypothetical protein; Provisional
Probab=99.97 E-value=6.9e-29 Score=225.55 Aligned_cols=390 Identities=16% Similarity=0.180 Sum_probs=265.9
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf 97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP 80 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP 80 (443)
|+|+|+|.+-=--+.....+++++|+.+|.|.|.++....+...-|+...-. . ..--|.+.+++..++.+++||.|
T Consensus 1 ~~~~vviVDp~StG~~la~a~~~~G~~~v~V~S~~~~~~~~~~~f~~~~~~~-~---~~~~~~~~~~~~~~~~~~~aVi~ 76 (415)
T PRK07206 1 MMKKVVIVDPFSSGKFLAPAFKKRGIELIAVTSACDLDPLYYAGFDENIYRQ-Q---RIIKHIDETIEFLRQLGPDAVIA 76 (415)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHCCCCHHHHHH-H---HCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 9855999867651879999999739828999837988435442324343433-2---10578999999998629729997
Q ss_pred CCCHHHCCH-HHH-HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHC---CCCHHHH
Q ss_conf 853131097-666-88984592162689899987218998877664224433243334557999873200---3301220
Q gi|254780268|r 81 GYGFLSENA-KFA-EILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKE---IGFPVLV 155 (443)
Q Consensus 81 GyGfLsEn~-~fa-~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~---iGyPvii 155 (443)
|. |.. .+| +..+..|+++ |..+.....-.||..+|+.++++|+|++.+....+.+|+..++++ +|||+||
T Consensus 77 g~----E~gV~lAd~La~~LgLp~-~N~~~~~~aRRdK~~m~~~L~~aGl~~~~~~~~~~~~e~~~~~~~~~~~~~PvVv 151 (415)
T PRK07206 77 GA----ESGVELADRLAERLGLCY-ANAPALSSARRNKYEMINALANAGLPAIRQIDTADWEEASAWIRVNNLWDSPVVI 151 (415)
T ss_pred CC----HHHHHHHHHHHHHHCCCC-CCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 85----565999999999868998-9955688774599999999997599855388529999999999860557999899
Q ss_pred HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCC--CCCCEEEEEEEEEEEECCEEEE-EECCCCCCCCCCCCCCCCCC
Q ss_conf 00234578216888750668999998754321258--9981688443420110331577-73478702365665421135
Q gi|254780268|r 156 KASAGGGGRGMRIAYSENDLSEAIDQARSEALAAF--GNDAVYIEKYLENPRHIEVQIF-GDGMGNAIHFGERDCSVQRR 232 (443)
Q Consensus 156 Kp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~f--gd~~vlvEk~i~~~rhiEvqVl-~D~~g~~v~l~erdCSiQrr 232 (443)
||.+|.||.|+++|++.+|+.++|+...... ..+ .+..+++|+||+|+ |+-|..+ .||.-.+..++.++-.--..
T Consensus 152 KP~~gagS~gV~~c~~~~el~~a~~~i~~~~-n~~g~~~~~vLveEyl~G~-EysVe~vs~~G~h~v~~i~~y~k~~~~~ 229 (415)
T PRK07206 152 KPLESAGSDGVFFCPDKQDAYHAFNAILGKA-NKLGLVNESVLVQEFLIGT-EYVVNTVSINGNHLVTEIVRYHKTSLNR 229 (415)
T ss_pred ECCCCCCCCCEEEECCHHHHHHHHHHHHCCC-CCCCCCCCCEEEEECCCCC-EEEEEEEEECCCEEEEEEEEECCCCCCC
T ss_conf 5899998799899799999999999985665-4357867538875414685-7899999878968999999972556899
Q ss_pred CCEEEEE-CCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEECCCCEEEEECCCCCCC--CCHHHHHHHCCCCHHH
Q ss_conf 6225540-3445588999999999999988651543-4102458972883499822765433--2016788632562011
Q gi|254780268|r 233 NQKIWEE-AHSPVISAQDRTEIGETCVKAMKKIDYR-GAGTIEFLYENGQFYFIEMNTRLQV--EHPVTEAITGIDLVHE 308 (443)
Q Consensus 233 ~qkiiEe-aPap~l~~~~~~~i~~~A~~~~~~~g~~-g~~tvEFl~~~~~~yflEvN~Rlqv--eh~vte~~tgvdlv~~ 308 (443)
+.-+.+. -+.| .++...++|.+++.++++++|++ |..+.|++++++.+.++|+|+|+.= --.+.+.+||.+.+.+
T Consensus 230 ~~~~~~~~~~~p-~~~~~~~~l~~y~~~~l~ALGi~~G~~H~Ev~lt~~gp~liE~~~R~~G~~~~~~~~~~~g~~~~~~ 308 (415)
T PRK07206 230 GSVVYDYDELLP-CTSPEYQELVDYTKKALDALGIKNGPAHAEIMLTSDGPVLIETGARLDGGLHPDAARVATGFSQLDL 308 (415)
T ss_pred CCEEEECCEECC-CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCHHHHHHCCCCCHHHH
T ss_conf 865653203569-9848999999999999998387757721899982898289996787789864789987058799999
Q ss_pred HHHHHHCCCCCCCC-CCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEC----CCCCC-EEEECCCCCCCEECCCCCCC-
Q ss_conf 23222102222211-3333201245330245662211112442158866----89984-46777602387707776843-
Q gi|254780268|r 309 QIYVASENRLSVQQ-KDITFSGHAIECRINAEDPENFIPNPGEITYFHA----PGGLG-IRMDSASYQGYTVPSYYDSL- 381 (443)
Q Consensus 309 ~~~~a~g~~l~~~~-~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i~~~~~----p~~~g-vRvDt~~~~G~~i~~~yDsm- 381 (443)
.+...++..-.... ....++.|+..+-+. -|..|+++.+.. -.-|+ .++..++..|+.+++--|-.
T Consensus 309 ~v~~~l~~~~~~~~~~~y~~~~~~~~v~Li-------s~~~G~l~~~~gl~~i~~Lpsf~~~~~~~~~G~~v~~T~Dl~s 381 (415)
T PRK07206 309 TAQSLADPDRFRETRESYKLQAHSLNVFLI-------SQAAGVISGKHFLRELQKLPSFKKSVYYVNEGDNVKVTVDLFS 381 (415)
T ss_pred HHHHHCCCHHCCCCCCCCCCCCEEEEEEEE-------CCCCCEEECCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 999850931104678876644348999985-------3999358577269999838875379996699798088766789
Q ss_pred -EEEEEEECCCHHHHHHHHHHHHHHCEECC
Q ss_conf -38999955998999999998765408826
Q gi|254780268|r 382 -IAKLIVHGKNRKECMMRLNRALNEIIIDG 410 (443)
Q Consensus 382 -laKiI~~g~~R~~Ai~~l~~aL~~~~I~G 410 (443)
.+-++-...|.++ +.+-.+.++++.-.|
T Consensus 382 ~pG~v~L~~~d~~~-l~~D~~~iR~le~~g 410 (415)
T PRK07206 382 QPGIVYLVHSDKEQ-LEQDYRKIRKMESDG 410 (415)
T ss_pred CCEEEEEECCCHHH-HHHHHHHHHHHHHCC
T ss_conf 98799997699999-999999999986458
No 42
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.97 E-value=8.6e-29 Score=224.87 Aligned_cols=293 Identities=21% Similarity=0.295 Sum_probs=238.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf 70686644709999999988880965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r 2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG 81 (443)
Q Consensus 2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG 81 (443)
+++|-|.+-|..+.=..-+++.||++++++ +|+.+++..+.||..+.- .|-|.+++.+.+.++.+-.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vL--dp~~~~PA~~va~~~i~~-------~~dD~~al~ela~~~DViT---- 67 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVL--DPDADAPAAQVADRVIVA-------AYDDPEALRELAAKCDVIT---- 67 (375)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEE--CCCCCCCHHHCCCCEEEC-------CCCCHHHHHHHHHHCCEEE----
T ss_conf 976999768699999999998649779995--699999633414315415-------7788899999986298899----
Q ss_pred CCHHHCC--HHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 5313109--76668898459216268989998721899887766422443324333455799987320033012200023
Q gi|254780268|r 82 YGFLSEN--AKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASA 159 (443)
Q Consensus 82 yGfLsEn--~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~ 159 (443)
|-| || .+-.+.++.. .+ +-|++++++...||...|++++++|+||+||....+.+++..+++++|||.|+|...
T Consensus 68 ~Ef--E~V~~~aL~~l~~~-~~-v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~g~p~VlKtr~ 143 (375)
T COG0026 68 YEF--ENVPAEALEKLAAS-VK-VFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLGFPAVLKTRR 143 (375)
T ss_pred EEE--CCCCHHHHHHHHHH-CC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEECC
T ss_conf 851--46988999999961-67-699989988776689999999976999998278579889999999759956998322
Q ss_pred CCC-CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 457-8216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r 160 GGG-GRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238 (443)
Q Consensus 160 gGG-G~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE 238 (443)
||+ |||++++++.+++......... .+..++|+|++.-||+.|-+.++..|++..++--+ ++|+..--..-
T Consensus 144 gGYDGkGQ~~i~~~~~~~~~~~~~~~-------~~~~vlE~fV~F~~EiSvi~aR~~~G~~~~yP~~e-N~h~~gIl~~s 215 (375)
T COG0026 144 GGYDGKGQWRIRSDADLELRAAGLAE-------GGVPVLEEFVPFEREISVIVARSNDGEVAFYPVAE-NVHRNGILRTS 215 (375)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHC-------CCCEEEEEECCCCEEEEEEEEECCCCCEEEECCCC-EEEECCEEEEE
T ss_conf 65668870894070102356766513-------68636886035664899999985899789806621-01336789999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 034455889999999999999886515434102458972-8834998227654332016788632562011232221022
Q gi|254780268|r 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENR 317 (443)
Q Consensus 239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~ 317 (443)
.+|| .+++.+.++.+++|.+++++++|+|+..|||++. +|+++++|+.||..=+--.|.....+.=-+.++|.-+|.|
T Consensus 216 iaPa-~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~glP 294 (375)
T COG0026 216 IAPA-RIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVLGLP 294 (375)
T ss_pred EECC-CCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCC
T ss_conf 7237-689899999999999999975945789999999789848986136898786651233121248999999982999
Q ss_pred CCC
Q ss_conf 222
Q gi|254780268|r 318 LSV 320 (443)
Q Consensus 318 l~~ 320 (443)
|+.
T Consensus 295 Lg~ 297 (375)
T COG0026 295 LGS 297 (375)
T ss_pred CCC
T ss_conf 997
No 43
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.97 E-value=5.6e-27 Score=211.99 Aligned_cols=374 Identities=19% Similarity=0.255 Sum_probs=254.5
Q ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf 686644709999999988880-9659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r 4 KILIANRGEIALRILRACKEL-GIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY 82 (443)
Q Consensus 4 ~iLianrGeia~riira~~el-Gi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy 82 (443)
||||.+.|-=---+..++.+- .+..|-++.-....+ ++.... ...-+..|.+.|++.|+++++|.+.+|-
T Consensus 6 kVLviGsGGREHAia~kl~~S~~v~~v~~aPGN~G~~------~~~~~~---~~~i~~~d~~~i~~fa~~~~idLvvvGP 76 (426)
T PRK13789 6 KVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFP------DDELLP---ADSFSILDKSSVQSFLKSNPFDLIVVGP 76 (426)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCC------CCCCCC---CCCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 8999898889999999996198988799988976112------345454---4433866999999999984999999896
Q ss_pred CHHHCCH---HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 3131097---6668898459216268989998721899887766422443324333455799987320033012200023
Q gi|254780268|r 83 GFLSENA---KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASA 159 (443)
Q Consensus 83 GfLsEn~---~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~ 159 (443)
|.+ .++..++++||+..||+.++.++.++|..+|++|+++||||+.+....+.++++++.++.++|++|||..
T Consensus 77 ----E~PL~~Gi~D~l~~~gi~vfGP~k~aA~LE~SK~faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~~~P~VIKaDG 152 (426)
T PRK13789 77 ----EDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEMLPIVIKADG 152 (426)
T ss_pred ----CHHHHHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCEEEECCC
T ss_conf ----6888631799984169916895989950512698999999972999760157368999999998579988996787
Q ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCC--CCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 457821688875066899999875432125899--816884434201103315777347870236566542113562255
Q gi|254780268|r 160 GGGGRGMRIAYSENDLSEAIDQARSEALAAFGN--DAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIW 237 (443)
Q Consensus 160 gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd--~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkii 237 (443)
.-+|||+.|+.+.+|..++++..+... .||+ ..|+||+|++| .|+.++++.||. ++++++ +.|. |..+-
T Consensus 153 LAaGKGV~V~~~~~eA~~al~~i~~~~--~fg~ag~~VvIEE~L~G-~E~S~~a~~dG~-~~~~lp----~aQD-hKR~~ 223 (426)
T PRK13789 153 LAAGKGVTVATEKKMAKRALKEIFKDK--KFGQSGNQVVIEEFMEG-QEASIFAISDGD-SYFLLP----AAQD-HKRAF 223 (426)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHH--HHHCCCCEEEEEECCCC-CCEEEEEEECCC-EEEECC----CCCC-CCCCC
T ss_conf 689996695399999999999975442--33035875999974589-844799997299-778688----6444-42133
Q ss_pred E------------ECCCCCCCHHHHHHHHH----HHHHHHHHHC--CCCCCEEEEEEC-CCCEEEEECCCCC-----CCC
Q ss_conf 4------------03445588999999999----9999886515--434102458972-8834998227654-----332
Q gi|254780268|r 238 E------------EAHSPVISAQDRTEIGE----TCVKAMKKID--YRGAGTIEFLYE-NGQFYFIEMNTRL-----QVE 293 (443)
Q Consensus 238 E------------eaPap~l~~~~~~~i~~----~A~~~~~~~g--~~g~~tvEFl~~-~~~~yflEvN~Rl-----qve 293 (443)
| .+|+|.+++++.+++.+ -.++..++-| |+|+-=+.||++ +|++++||.|.|+ ||=
T Consensus 224 dgD~GPNTGGMGaysP~p~~~~~~~~~i~~~ii~pt~~~l~~~g~~y~GvLy~GlMlt~~G~pkVlEfN~RfGDPE~q~i 303 (426)
T PRK13789 224 DGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGEPKVVEFNCRFGDPETQCV 303 (426)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEEEEECCCCHHHHH
T ss_conf 79999999987677778668999999999860489999998589998867653289926997699998853189168889
Q ss_pred CHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHCCCCC-CCCCCCCCCCEEEEECCCCCCEEEECC-C--
Q ss_conf 0167886325620112322210222221133332-0124533024566-221111244215886689984467776-0--
Q gi|254780268|r 294 HPVTEAITGIDLVHEQIYVASENRLSVQQKDITF-SGHAIECRINAED-PENFIPNPGEITYFHAPGGLGIRMDSA-S-- 368 (443)
Q Consensus 294 h~vte~~tgvdlv~~~~~~a~g~~l~~~~~~i~~-~g~aie~Ri~aEd-p~~f~Ps~G~i~~~~~p~~~gvRvDt~-~-- 368 (443)
-|. -.-||++.....+.|. |+. .++.. +++++-.=+-+.. |. .|..|...........++.+..+ +
T Consensus 304 Lp~----L~~dl~~~~~a~~~g~-L~~--~~~~~~~~~~v~vvlas~GYP~--~~~kg~~I~~~~~~~~~~~vfhagt~~ 374 (426)
T PRK13789 304 LAM----LDGDLLELLYAASTGK-IKV--VNLKLKQGAAAVVVLAAQGYPD--SYEKNIPLNLPETSGQNVVLFHAGTKK 374 (426)
T ss_pred HHH----HHCCHHHHHHHHHHCC-CCC--CCCCCCCCCCEEEEECCCCCCC--CCCCCCEECCCCCCCCCEEEEEEEEEE
T ss_conf 887----4154999999997088-664--5443026740699974688999--777998851866677986999703441
Q ss_pred CCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECC
Q ss_conf 238770777684338999955998999999998765408826
Q gi|254780268|r 369 YQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDG 410 (443)
Q Consensus 369 ~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~G 410 (443)
..|..++.- +=+.-++++|.|.++|.++..++++.....|
T Consensus 375 ~~g~l~t~G--GRVL~v~a~g~tl~eA~~~aY~~i~~I~~~g 414 (426)
T PRK13789 375 KDGKVFSSG--GRILGIVAQGKDLKDSVDQAYSFLEKIQAPK 414 (426)
T ss_pred ECCEEEECC--CCEEEEEEECCCHHHHHHHHHHHHHHCCCCC
T ss_conf 799899735--9389999976999999999999996068999
No 44
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.96 E-value=1.1e-26 Score=209.95 Aligned_cols=371 Identities=20% Similarity=0.251 Sum_probs=251.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf 6866447099999999888809-659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r 4 KILIANRGEIALRILRACKELG-IPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY 82 (443)
Q Consensus 4 ~iLianrGeia~riira~~elG-i~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy 82 (443)
||||.+.|-=---+..++.+-. +..|-+..--...+ ..+.....+ +-.|.+.|++.|+++++|.+.+|-
T Consensus 2 kVLviGsGgREHAla~~l~~s~~v~~v~~aPGN~g~~---~~a~~~~~i-------~~~d~~~i~~~a~~~~iDLvvvGP 71 (415)
T PRK13790 2 NVLVIGAGGREHALAYKLNQSNLVKQVFVIPGNEAMT---PIAEVHTEI-------SESDHQAILDFAKQQNVDWVVIGP 71 (415)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHH---HHCCCCCCC-------CCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 7999887889999999996298989899978955765---223024676-------855899999999981999999896
Q ss_pred CHHHCCH---HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 3131097---6668898459216268989998721899887766422443324333455799987320033012200023
Q gi|254780268|r 83 GFLSENA---KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASA 159 (443)
Q Consensus 83 GfLsEn~---~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~ 159 (443)
|.+ .++..++++||..+||+.++.++.++|..+|++|+++||||+.+....+.+++.++.++.++|++||+..
T Consensus 72 ----E~PL~~GivD~l~~~gi~vfGP~k~aA~LE~SK~faK~~m~~~~IPTa~~~~f~~~~~A~~~l~~~~~p~VIKaDG 147 (415)
T PRK13790 72 ----EQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCELPVVVKKDG 147 (415)
T ss_pred ----CHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEECCC
T ss_conf ----0786634888864389759894979951512699999999982979777255087999999986179988996686
Q ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE-
Q ss_conf 4578216888750668999998754321258998168844342011033157773478702365665421135622554-
Q gi|254780268|r 160 GGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE- 238 (443)
Q Consensus 160 gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE- 238 (443)
..+|||+.++.+.+|..++++..+... .| +.|+||+|++| .|+.++++.||. ++++++ |..|. |..+-|
T Consensus 148 LAaGKGV~V~~~~~eA~~al~~i~~~~--~~--g~VvIEE~L~G-~E~S~~a~~DG~-~~~p~~---~~aQD-hKR~~dg 217 (415)
T PRK13790 148 LAAGKGVIIADTIEAARSAIEIMYGDE--EE--GTVVFETFLEG-EEFSLMTFVNGD-LAVPFD---CIAQD-HKRAFDH 217 (415)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHCCC--CC--CEEEEEEECCC-CCEEEEEEECCC-EEEECC---CCCCC-CCCCCCC
T ss_conf 678995699799999999999985555--47--65999871578-634899997399-799577---54321-2024689
Q ss_pred -----------ECCCCCCCHHHHHHHH----HHHHHHHHHHC--CCCCCEEEEEECCCCEEEEECCCCCC-CCCHHHHHH
Q ss_conf -----------0344558899999999----99999886515--43410245897288349982276543-320167886
Q gi|254780268|r 239 -----------EAHSPVISAQDRTEIG----ETCVKAMKKID--YRGAGTIEFLYENGQFYFIEMNTRLQ-VEHPVTEAI 300 (443)
Q Consensus 239 -----------eaPap~l~~~~~~~i~----~~A~~~~~~~g--~~g~~tvEFl~~~~~~yflEvN~Rlq-veh~vte~~ 300 (443)
.+|+|.+++++.+++. +-.++..++-| |+|+-=+.||++++.+++||.|.|+- -|--+.=..
T Consensus 218 D~GPNTGGMGaysp~p~~~~~~~~~~~~~I~~p~~~~l~~eg~~y~GvLy~GlMlt~~GpkVlEyN~RfGDPE~q~iLp~ 297 (415)
T PRK13790 218 DEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNARFGDPEAQVLLSR 297 (415)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHH
T ss_conf 99999998756677744698999999987089999999855998489988779986898669998741189228889876
Q ss_pred HCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCC---CCCEEEECC--CCCCCEE
Q ss_conf 32562011232221022222113333201245330245662-21111244215886689---984467776--0238770
Q gi|254780268|r 301 TGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPG---GLGIRMDSA--SYQGYTV 374 (443)
Q Consensus 301 tgvdlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~---~~gvRvDt~--~~~G~~i 374 (443)
-.-||++....++.|.+..+.-.+-..-+..+...-|-+.| +++ .|+-+.... ..|++.+.+ +..|..
T Consensus 298 L~~Dl~~~~~~~~~g~~~~~~~~~~~~v~vvlas~GYP~~~~kg~-----~I~g~~~~~~vf~ag~~~~~~~l~t~GGR- 371 (415)
T PRK13790 298 MESDLMQHIIDLDEGKRTEFKWKNESIVGVMLASKGYPDAYEKGH-----KVSGFDLNENYFVSGLKKQGDTFVTSGGR- 371 (415)
T ss_pred CCCHHHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCCCCCCC-----CCCCCCCCCCEEEEEEEEECCEEEECCCC-
T ss_conf 055199999999759987157637836999964588997777997-----25577777619986678779989977692-
Q ss_pred CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECCC
Q ss_conf 7776843389999559989999999987654088263
Q gi|254780268|r 375 PSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGI 411 (443)
Q Consensus 375 ~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv 411 (443)
+.-+++.|.|.++|.++..++++.....|.
T Consensus 372 -------VL~v~a~g~~l~eA~~~ay~~i~~I~~~g~ 401 (415)
T PRK13790 372 -------VILAIGKGDNVQDAQRDAYEKVSQIQSDHL 401 (415)
T ss_pred -------EEEEEEECCCHHHHHHHHHHHHHCCCCCCC
T ss_conf -------899999859999999999999852689999
No 45
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.96 E-value=2.1e-25 Score=200.87 Aligned_cols=375 Identities=23% Similarity=0.302 Sum_probs=253.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf 6866447099999999888809-659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r 4 KILIANRGEIALRILRACKELG-IPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY 82 (443)
Q Consensus 4 ~iLianrGeia~riira~~elG-i~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy 82 (443)
||||.+.|-=---+.+++.+-. +..|-+..--...+. .+ +.+.+ +..|++.|++.|+++++|.+.+|-
T Consensus 2 kVLviGsGgREHAia~kl~~s~~v~~v~~~PGN~G~~~---~~-~~~~i-------~~~d~~~l~~~a~~~~idlviiGP 70 (424)
T PRK00885 2 KVLVIGSGGREHALAWKLAQSPLVEKVYVAPGNAGTAL---EA-ENVAI-------DVTDIEALVAFAKEEGIDLTVVGP 70 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHH---CC-EEECC-------CCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 79998888899999999973979898999289758874---17-36512-------857999999999984999999896
Q ss_pred CHHHCCH---HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 3131097---6668898459216268989998721899887766422443324333455799987320033012200023
Q gi|254780268|r 83 GFLSENA---KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASA 159 (443)
Q Consensus 83 GfLsEn~---~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~ 159 (443)
|.+ .++..++++|++.+||+.++.++.++|..+|++|++++|||+.+....+.+++.++.++.++|++|||..
T Consensus 71 ----E~pL~~Gi~D~l~~~gi~vfGP~k~aA~lE~SK~faK~~m~~~~IPTa~~~~f~~~~~A~~~l~~~~~p~VIKaDG 146 (424)
T PRK00885 71 ----EAPLVAGIVDAFRAAGLKIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYEVFTDAEEAKAYLDEQGAPIVVKADG 146 (424)
T ss_pred ----CHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEECCC
T ss_conf ----6788735799995069946894978988766379999999982989875488689999999998579988996176
Q ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCC--CCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 457821688875066899999875432125899--816884434201103315777347870236566542113562255
Q gi|254780268|r 160 GGGGRGMRIAYSENDLSEAIDQARSEALAAFGN--DAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIW 237 (443)
Q Consensus 160 gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd--~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkii 237 (443)
..+|||+.++.+.+|..++++..+.. ..||+ ..|+||+|++|. |+.++++.||. +.++++. .|. |.++-
T Consensus 147 LAaGKGV~V~~~~~ea~~al~~i~~~--~~fg~ag~~VvIEE~L~G~-E~S~~a~~DG~-~~~~lp~----aqD-hKR~~ 217 (424)
T PRK00885 147 LAAGKGVVVAMTLEEAEAAVDDMLAG--NKFGDAGARVVIEEFLDGE-EASFFALVDGE-NVLPLPT----AQD-HKRAG 217 (424)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHCC--CCCCCCCCEEEEEECCCCC-EEEEEEEECCC-CCCCCCC----CCC-CCCCC
T ss_conf 56777517637899999999998503--3234568728999705883-17999997899-7264702----114-75056
Q ss_pred E------------ECCCCCCCHHHHHHHHH----HHHHHHHH--HCCCCCCEEEEEECCCCEEEEECCCCCC-CCCHHHH
Q ss_conf 4------------03445588999999999----99998865--1543410245897288349982276543-3201678
Q gi|254780268|r 238 E------------EAHSPVISAQDRTEIGE----TCVKAMKK--IDYRGAGTIEFLYENGQFYFIEMNTRLQ-VEHPVTE 298 (443)
Q Consensus 238 E------------eaPap~l~~~~~~~i~~----~A~~~~~~--~g~~g~~tvEFl~~~~~~yflEvN~Rlq-veh~vte 298 (443)
| .+|+|.+++++.+++.+ -.++..+. +.|+|+-=+.+|++++.+++||.|.|+- .|--+.=
T Consensus 218 dgD~GPNTGGMGa~sP~p~~~~~~~~~i~~~Ii~pt~~~l~~eg~~y~GiLy~GlMit~~GpkVlEyN~RfGDPE~qvll 297 (424)
T PRK00885 218 DGDTGPNTGGMGAYSPAPVVTEEVHDRVMEEIIEPTVKGMAAEGIPYTGVLYAGLMITKDGPKVIEFNCRFGDPETQVVL 297 (424)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEECCCCCHHHHHHH
T ss_conf 89999889988566788679999999999987999999998579847999877999867975589863134885888998
Q ss_pred HHHCCCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHCCCCC-CCCCCCCCCC-EEEEECCCCCCEEEE-CCC--CCCC
Q ss_conf 86325620112322210222221133332-0124533024566-2211112442-158866899844677-760--2387
Q gi|254780268|r 299 AITGIDLVHEQIYVASENRLSVQQKDITF-SGHAIECRINAED-PENFIPNPGE-ITYFHAPGGLGIRMD-SAS--YQGY 372 (443)
Q Consensus 299 ~~tgvdlv~~~~~~a~g~~l~~~~~~i~~-~g~aie~Ri~aEd-p~~f~Ps~G~-i~~~~~p~~~gvRvD-t~~--~~G~ 372 (443)
..-.-||++.....+.|. |+. .++.+ +++++-.=+-++. |. .|..|. |+-... ..+++.+- +++ ..|.
T Consensus 298 p~L~~dl~~l~~~~~~g~-L~~--~~~~~~~~~~v~Vvlas~GYP~--~~~~g~~I~~~~~-~~~~~~ifhagt~~~~g~ 371 (424)
T PRK00885 298 PRLKSDLVELLLAAAEGK-LDE--VPLEWDDRAAVGVVLAAKGYPG--DYRKGDVITGLDE-AEDGVKVFHAGTKLEDGK 371 (424)
T ss_pred HHCCCCHHHHHHHHHCCC-CCC--CCCCCCCCCEEEEEEECCCCCC--CCCCCCCCCCCCC-CCCCCEEEEEEEEEECCE
T ss_conf 752361999999875398-554--5533347833799991698898--8889987048766-789989997103627998
Q ss_pred EECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECC
Q ss_conf 70777684338999955998999999998765408826
Q gi|254780268|r 373 TVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDG 410 (443)
Q Consensus 373 ~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~G 410 (443)
.++. -+=+--++++|.|.++|.++..+.++.....|
T Consensus 372 l~t~--GGRVl~vva~g~tl~~A~~~aY~~i~~I~~~~ 407 (424)
T PRK00885 372 LVTN--GGRVLCVTALGDTLEEAQKRAYAALDKIDFDG 407 (424)
T ss_pred EEEC--CCEEEEEEEECCCHHHHHHHHHHHHHCCCCCC
T ss_conf 9977--89489999987999999999999985267899
No 46
>pfam01071 GARS_A Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02786).
Probab=99.96 E-value=8.7e-28 Score=217.74 Aligned_cols=174 Identities=25% Similarity=0.366 Sum_probs=139.7
Q ss_pred HCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 18998877664224433243334557999873200330122000234578216888750668999998754321258998
Q gi|254780268|r 114 GDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGND 193 (443)
Q Consensus 114 gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~ 193 (443)
|||..+|++++++|||+++|....+.+++.++++++|||++|||++++||+||.+|++++|+..+++.+........+++
T Consensus 1 gdK~~~r~~l~~~gip~p~~~~~~~~~ea~~~~~~~g~P~VvKp~~~~gs~Gv~~v~~~~e~~~a~~~~~~~~~~~~~~~ 80 (193)
T pfam01071 1 GSKSFAKDFMKRHGIPTAEYETFTDPEEAKSYIREAGFPAVVKADGLAAGKGVIVAMDNEEAIKAVDEILEQKKFGEAGE 80 (193)
T ss_pred CCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98899999999869899990787899999999997699889997434678837995458999999999985230357899
Q ss_pred CEEEEEEEEEEEECCEEEEEECCCCCCC---------CCCCCCCCCCCCCEEEEECCCCCCCHHHHHH----HHHHHHHH
Q ss_conf 1688443420110331577734787023---------6566542113562255403445588999999----99999998
Q gi|254780268|r 194 AVYIEKYLENPRHIEVQIFGDGMGNAIH---------FGERDCSVQRRNQKIWEEAHSPVISAQDRTE----IGETCVKA 260 (443)
Q Consensus 194 ~vlvEk~i~~~rhiEvqVl~D~~g~~v~---------l~erdCSiQrr~qkiiEeaPap~l~~~~~~~----i~~~A~~~ 260 (443)
+|+||+||+| .|++|+.+.|+. ++.+ +++.|+..+..++.. .+|+|.++++..++ +.+.+.+.
T Consensus 81 ~vlvEefl~G-~E~sv~~~~dg~-~~~~~~~~~~~k~~~~~d~g~~tg~~g~--~~p~~~~~~~~~~~~~~~i~~~~~~a 156 (193)
T pfam01071 81 PVVIEEFLEG-EEVSVLAFVDGK-TVKPLPPAQDHKRLGEGDTGPNTGGMGA--YSPAPVLTPELLERIKETIVEPTVDG 156 (193)
T ss_pred CEEEEEECCC-CEEEEEEEEECC-EEEEEEEEEEEEEECCCCCCCCCCCCCE--ECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 7899872057-165578984099-7997142176445015788887799724--63475589899999999999999999
Q ss_pred HHHHC--CCCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf 86515--43410245897288349982276543
Q gi|254780268|r 261 MKKID--YRGAGTIEFLYENGQFYFIEMNTRLQ 291 (443)
Q Consensus 261 ~~~~g--~~g~~tvEFl~~~~~~yflEvN~Rlq 291 (443)
+++.| |.|+.++||+++++.+|+||||+|+.
T Consensus 157 l~~~g~~~~G~~h~e~~lt~~GP~vIEiN~RlG 189 (193)
T pfam01071 157 LRKEGIPYKGVLYAGLMLTKDGPKVLEFNCRFG 189 (193)
T ss_pred HHHCCCCCEEEEEEEEEEECCCEEEEEEECCCC
T ss_conf 997499968899999999899579999939998
No 47
>pfam02222 ATP-grasp ATP-grasp domain. This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.
Probab=99.96 E-value=3.3e-28 Score=220.70 Aligned_cols=162 Identities=19% Similarity=0.311 Sum_probs=134.8
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCC-CCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 642244332433345579998732003301220002345-7821688875066899999875432125899816884434
Q gi|254780268|r 123 AQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGG-GGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYL 201 (443)
Q Consensus 123 a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gG-GG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i 201 (443)
|+++||||+||....+.+++.++++++|||+||||..+| ||+|+++|++++||.++++.+ .++++++|+||
T Consensus 1 l~~~Giptp~~~~i~~~~d~~~~~~~iGyP~vvKp~~~G~~g~G~~~v~~~~el~~a~~~~--------~~~~~liE~~I 72 (171)
T pfam02222 1 LQKLGLPTPRFMAAESLEELIEAGQELGYPCVLKARRGGYDGKGQYVVRSEADIPQAWEEL--------GGGPVIVEEFV 72 (171)
T ss_pred CHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHHC--------CCCCEEEEEEC
T ss_conf 9020989999549899999999999709978999611025898528988999999999855--------89957998604
Q ss_pred EEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCC
Q ss_conf 2011033157773478702365665421135622554034455889999999999999886515434102458972-883
Q gi|254780268|r 202 ENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQ 280 (443)
Q Consensus 202 ~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~ 280 (443)
+..+|+++.+++|.+|+++.+.-. ..+|+.+......+|++ +++++.+++++.|.++++++||.|+.+|||+++ +|+
T Consensus 73 ~~~~Ei~~~~~r~~~g~~~~~~~~-e~~~~~g~~~~~~~Pa~-~~~~~~~~i~~~a~ki~~aLg~~G~~~veff~~~dG~ 150 (171)
T pfam02222 73 PFDKELSVLVVRSVDGETAFYPPV-ETIQEDGICHESVAPAR-VPDSQQAKAQEIAKKIVDELGGVGIFGVELFVLPDGD 150 (171)
T ss_pred CCCEEEEEEEEECCCCCEEECCCE-EEEEECCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf 675799987434499989980354-66886781898742888-8989999999999999998397045999999939997
Q ss_pred EEEEECCCCCCCCC
Q ss_conf 49982276543320
Q gi|254780268|r 281 FYFIEMNTRLQVEH 294 (443)
Q Consensus 281 ~yflEvN~Rlqveh 294 (443)
+||+|||||.+.+-
T Consensus 151 ~~v~EvnpR~h~sg 164 (171)
T pfam02222 151 LLVNELAPRPHNSG 164 (171)
T ss_pred EEEEEECCCCCCCC
T ss_conf 99999649967757
No 48
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.95 E-value=3.7e-25 Score=199.09 Aligned_cols=373 Identities=22% Similarity=0.294 Sum_probs=250.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCC--CEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf 6866447099999999888809--65999858557718776758579991899853000698999999987099899458
Q gi|254780268|r 4 KILIANRGEIALRILRACKELG--IPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG 81 (443)
Q Consensus 4 ~iLianrGeia~riira~~elG--i~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG 81 (443)
||||.+.|-=---|..++.+-+ .+.++-.-|+-... +.+++.... . .|.+.|++.|++.++|.+..|
T Consensus 2 kVLviGsGGREHAiA~kla~s~~v~~~~~apgN~G~a~-------~~~~~~~~~---~-~~~~~lv~fA~~~~idl~vVG 70 (428)
T COG0151 2 KVLVIGSGGREHALAWKLAQSPLVLYVYVAPGNPGTAL-------EAYLVNIEI---D-TDHEALVAFAKEKNVDLVVVG 70 (428)
T ss_pred EEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCH-------HHHHCCCCC---C-CCHHHHHHHHHHCCCCEEEEC
T ss_conf 49998688169999999840876249999379974211-------344336765---5-588999999997399989989
Q ss_pred CCHHHCCHH---HHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCC
Q ss_conf 531310976---66889845921626898999872189988776642244332433345579998732003301220002
Q gi|254780268|r 82 YGFLSENAK---FAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKAS 158 (443)
Q Consensus 82 yGfLsEn~~---fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~ 158 (443)
- |.+- ++..++++||+..||+.++.++.++|..+|++|.++|||++.+....+.++++++.++.|.|++|||.
T Consensus 71 P----E~pL~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~e~a~ayi~~~g~piVVKad 146 (428)
T COG0151 71 P----EAPLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDPEEAKAYIDEKGAPIVVKAD 146 (428)
T ss_pred C----CHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHCCCCEEEECC
T ss_conf 7----178764468999877996238678898877539999999998199964111008989999999972998899345
Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCC--CEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 34578216888750668999998754321258998--1688443420110331577734787023656654211356225
Q gi|254780268|r 159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGND--AVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKI 236 (443)
Q Consensus 159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~--~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qki 236 (443)
..-+|||+.++.+.+|..++....+.. ..||+. +|+||+|++| -|+.++++.||. +++++. +.|. |..+
T Consensus 147 GLaaGKGV~V~~~~eeA~~a~~~~l~~--~~fg~~g~~VVIEEfL~G-eE~S~~a~~DG~-~v~p~p----~aQD-hKra 217 (428)
T COG0151 147 GLAAGKGVIVAMTLEEAEAAVDEMLEG--NAFGSAGARVVIEEFLDG-EEFSLQAFVDGK-TVIPMP----TAQD-HKRA 217 (428)
T ss_pred CCCCCCCEEECCCHHHHHHHHHHHHHH--CCCCCCCCCEEEEECCCC-EEEEEEEEECCC-EEEECC----CCCC-CCCC
T ss_conf 446789859827799999999999740--001478874899853346-179999997698-678785----3145-6433
Q ss_pred EE------------ECCCCCCCHHHHHHHH----HHHHHHHHHHC--CCCCCEEEEEECCCCEEEEECCCCC-----CCC
Q ss_conf 54------------0344558899999999----99999886515--4341024589728834998227654-----332
Q gi|254780268|r 237 WE------------EAHSPVISAQDRTEIG----ETCVKAMKKID--YRGAGTIEFLYENGQFYFIEMNTRL-----QVE 293 (443)
Q Consensus 237 iE------------eaPap~l~~~~~~~i~----~~A~~~~~~~g--~~g~~tvEFl~~~~~~yflEvN~Rl-----qve 293 (443)
-| .||+|.+++++.+++. +-+++...+-| |+|+--.+||++.+.+++||.|.|. |+-
T Consensus 218 ~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~GPkViEfN~RFGDPEtq~v 297 (428)
T COG0151 218 YDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFNARFGDPETQVV 297 (428)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEECCCCCHHHHHH
T ss_conf 48998998888777779887998999999999999999999971898147887678982899679998566688357777
Q ss_pred CHHHHHHHCCCCHHHHHHHHHCC--CCCCCCCCC-CCCHHHHHHHCCCCCCCCCCCCCCC-EEEEECCCCCCEEEE-CCC
Q ss_conf 01678863256201123222102--222211333-3201245330245662211112442-158866899844677-760
Q gi|254780268|r 294 HPVTEAITGIDLVHEQIYVASEN--RLSVQQKDI-TFSGHAIECRINAEDPENFIPNPGE-ITYFHAPGGLGIRMD-SAS 368 (443)
Q Consensus 294 h~vte~~tgvdlv~~~~~~a~g~--~l~~~~~~i-~~~g~aie~Ri~aEdp~~f~Ps~G~-i~~~~~p~~~gvRvD-t~~ 368 (443)
-|.- -=||++....++.|. .......+- ..-+-.+.++-|-++ |..|. |+-.......++.+- .++
T Consensus 298 L~~l----~sdl~~~~~a~~~g~L~~~~~~~~~~~a~v~vvlA~~GYP~~-----~~kG~~I~~~~~~~~~~~~vf~Agv 368 (428)
T COG0151 298 LPLL----ESDLVELLLAAVDGKLDEVEILFWDKGAAVGVVLAAEGYPGD-----PEKGDVITGDEEAEEEGAKVFHAGV 368 (428)
T ss_pred HHHC----CCCHHHHHHHHHHCCCCCCCHHHCCCCCEEEEEEECCCCCCC-----CCCCCEEECCHHHCCCCCEEEEEEE
T ss_conf 8760----260999999997187556442221578569999905888988-----8899887647564266838999667
Q ss_pred C--CCC-EECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECCC
Q ss_conf 2--387-707776843389999559989999999987654088263
Q gi|254780268|r 369 Y--QGY-TVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGI 411 (443)
Q Consensus 369 ~--~G~-~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv 411 (443)
. .|. .++.- +=.--++..|.|.++|.+++.+++++..-.|.
T Consensus 369 ~~~~~~~lvt~G--gRvL~v~~~g~t~~eA~~~ay~~~~~i~~~g~ 412 (428)
T COG0151 369 KLDDGGQLVTSG--GRVLAVVGTGDTLEEAQEKAYEALEKIHFDGL 412 (428)
T ss_pred ECCCCCEEEECC--CEEEEEEECCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 215795599648--85899996589999999999999963577895
No 49
>pfam07478 Dala_Dala_lig_C D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=99.95 E-value=1.5e-27 Score=216.02 Aligned_cols=162 Identities=27% Similarity=0.373 Sum_probs=131.2
Q ss_pred HHHHCCCCCCCCCCCCCH----HHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 664224433243334557----9998732003301220002345782168887506689999987543212589981688
Q gi|254780268|r 122 TAQQLGIPVVPGSGEVYP----HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYI 197 (443)
Q Consensus 122 ~a~~~GVP~~p~~~~~~~----~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlv 197 (443)
+++++||||+||...... ..+.++.+++|||+++||+++|+|+||.+|++.+||.++++.+.+. +..++|
T Consensus 1 ll~~~Giptp~~~~v~~~~~~~~~~~~i~~~lg~P~vvKP~~~gss~Gv~~v~~~~el~~~i~~~~~~------~~~vlV 74 (201)
T pfam07478 1 LLKAAGIPVAPFIVLTREDWVLATIEKVEEKLGYPVFVKPANLGSSVGISKVTSREELQSAIEEAFQY------DNKVLI 74 (201)
T ss_pred CHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHC------CCCEEE
T ss_conf 95565999999089825323435799999865998899989999866879995846879999998745------980799
Q ss_pred EEEEEEEEECCEEEEEECCCCCCCCCCCCC--CCCCCCCEEEE-----ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 443420110331577734787023656654--21135622554-----03445588999999999999988651543410
Q gi|254780268|r 198 EKYLENPRHIEVQIFGDGMGNAIHFGERDC--SVQRRNQKIWE-----EAHSPVISAQDRTEIGETCVKAMKKIDYRGAG 270 (443)
Q Consensus 198 Ek~i~~~rhiEvqVl~D~~g~~v~l~erdC--SiQrr~qkiiE-----eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~ 270 (443)
|+||+| ||++|+|++|+...+....|+.. ++.+.++|... ..|+ .+++++.+++.++|.++++++|++|++
T Consensus 75 Eefi~G-~E~~v~vl~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~Pa-~l~~~~~~~i~~~A~~~~~aLg~~g~~ 152 (201)
T pfam07478 75 EEAIEG-REIECAVLGNEDLEVSPVGEIRLSGGFYDYEAKYILSSAQIIVPA-DLPEEVEEQIQELALKAYKALGCRGLA 152 (201)
T ss_pred EECCCC-CEEEEEEEECCCEEEEEEEEEECCCCEEEHHHEECCCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 985669-679999970898089875899437750267680136872376156-685999999999999999984887605
Q ss_pred EEEEEEC-CCCEEEEECCCCCC
Q ss_conf 2458972-88349982276543
Q gi|254780268|r 271 TIEFLYE-NGQFYFIEMNTRLQ 291 (443)
Q Consensus 271 tvEFl~~-~~~~yflEvN~Rlq 291 (443)
+|||++| +|++|||||||+=.
T Consensus 153 rvD~~~d~~g~~~vlEvN~~Pg 174 (201)
T pfam07478 153 RIDFFLTEDGEIYLNEVNTMPG 174 (201)
T ss_pred EEEEEECCCCCEEEEEECCCCC
T ss_conf 7999996899499999549799
No 50
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.94 E-value=1.2e-23 Score=188.25 Aligned_cols=373 Identities=19% Similarity=0.226 Sum_probs=234.8
Q ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEC-C--CHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEE
Q ss_conf 686644709999999988880-96599985-8--5577187767585799918998530006989999999870998994
Q gi|254780268|r 4 KILIANRGEIALRILRACKEL-GIPTVAVH-S--TADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH 79 (443)
Q Consensus 4 ~iLianrGeia~riira~~el-Gi~tv~v~-s--~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daih 79 (443)
||||.+.|==---+..++.+- ....|-+. . ||-........--+.+.+ +-.|++.|++.|+++++|.+.
T Consensus 2 kVLVIGsGGREHAla~kl~~Sp~v~~l~~aPGn~NpG~~~~a~~~~~~~~~~-------~~~d~~~i~~fa~~~~IDLvv 74 (485)
T PRK05784 2 KVLLVGDGAREHAIAEALAKSPKGYRIYALSSHLNPGIEEIVKKTGGEYFIG-------NPTSPGEVVKAAEEVSPDLVV 74 (485)
T ss_pred EEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCCEECC-------CCCCHHHHHHHHHHCCCCEEE
T ss_conf 8999898889999999996098989899973898752567764258721204-------877999999999981999999
Q ss_pred CCCCHHHCCH---HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf 5853131097---6668898459216268989998721899887766422443-32433345579998732003301220
Q gi|254780268|r 80 PGYGFLSENA---KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIP-VVPGSGEVYPHTAMPIAKEIGFPVLV 155 (443)
Q Consensus 80 PGyGfLsEn~---~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP-~~p~~~~~~~~ea~~~a~~iGyPvii 155 (443)
.|- |.+ .++..++++||+.+||+.++.++.++|..+|++|+++||| ++.+....+.++++++.+..+ |++|
T Consensus 75 VGP----E~PL~~Gi~D~l~~~gi~vFGP~k~aA~LE~SK~FaK~fm~~~~IPtta~~~~f~~~~~A~~~l~~~~-piVI 149 (485)
T PRK05784 75 IGP----EEPLFAGVADALREEGFPVFGASSKCAEIEKSKVFARSLMWKYGIPGRLRYGVFKDVEEAYSFAEYGG-SVAI 149 (485)
T ss_pred ECC----HHHHHHHHHHHHHHCCCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC-CEEE
T ss_conf 897----38876125899973799078968899414127889999999728996640121389999999986489-8499
Q ss_pred HCCCCCCCCEEEEEEECH-----HHHHHHHHHHHHH---HCCCCC--CCEEEEEEEEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf 002345782168887506-----6899999875432---125899--816884434201103315777347870236566
Q gi|254780268|r 156 KASAGGGGRGMRIAYSEN-----DLSEAIDQARSEA---LAAFGN--DAVYIEKYLENPRHIEVQIFGDGMGNAIHFGER 225 (443)
Q Consensus 156 Kp~~gGGG~Gi~vv~~~~-----el~~a~~~a~~ea---~~~fgd--~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~er 225 (443)
||...-+|||+.|+.+.. +..+++.....+. ...||+ ..|+||+|++| .|+.+.++.||. ++++++.
T Consensus 150 KaDGLAaGKGV~V~~~~~~~~~~~~~e~~~~~~~~~~~~~~~fg~ag~~VvIEEfL~G-~E~S~~a~~DG~-~~~~lp~- 226 (485)
T PRK05784 150 KPARQAGGKGVKVIYDLQAYLSNEKDEVLTKGAEEIKEQLASYRDVEEKILVEEKVDG-VEYTVQVLTDGE-SVFPLPP- 226 (485)
T ss_pred ECCHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC-CEEEEEEEEECC-EEEECCC-
T ss_conf 2113306785188227277777789999999999999876543246870999964468-179999998299-6998922-
Q ss_pred CCCCCCCCCEEEE------------ECCC----CCCCHHHHHHH---HHHHHHHH-HH--HCCCCCCEEEEEECCCCEEE
Q ss_conf 5421135622554------------0344----55889999999---99999988-65--15434102458972883499
Q gi|254780268|r 226 DCSVQRRNQKIWE------------EAHS----PVISAQDRTEI---GETCVKAM-KK--IDYRGAGTIEFLYENGQFYF 283 (443)
Q Consensus 226 dCSiQrr~qkiiE------------eaPa----p~l~~~~~~~i---~~~A~~~~-~~--~g~~g~~tvEFl~~~~~~yf 283 (443)
.|. |.++-| .+|+ |.++++..+++ .+-.++.. +. ..|+|+-=+.+|++++.+++
T Consensus 227 ---aQD-hKR~~dgD~GPNTGGMGAysP~~~~~P~l~~~~~~~~~~Ii~pti~~l~~e~g~~y~GvLY~GlMit~~GPkV 302 (485)
T PRK05784 227 ---VQD-NPHAYEYGIGPETGGMGSVSGPGELLPFIEEEEYEEAVEIVKATVEAIRKETGERYVGVLSGQMMLTALGPTV 302 (485)
T ss_pred ---CCC-CCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEE
T ss_conf ---205-7655689999899987006787667754479999999874899999998616997278887678861898489
Q ss_pred EECCCCC-----CCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHCCCCC-CCCCCCCCCCEEEEEC
Q ss_conf 8227654-----3320167886325620112322210222221133332-0124533024566-2211112442158866
Q gi|254780268|r 284 IEMNTRL-----QVEHPVTEAITGIDLVHEQIYVASENRLSVQQKDITF-SGHAIECRINAED-PENFIPNPGEITYFHA 356 (443)
Q Consensus 284 lEvN~Rl-----qveh~vte~~tgvdlv~~~~~~a~g~~l~~~~~~i~~-~g~aie~Ri~aEd-p~~f~Ps~G~i~~~~~ 356 (443)
||.|.|. ||=-|. -.-||++.....+.|. |+ +.++.. ..+++-+=+-++. |.......|.......
T Consensus 303 lEfN~RfGDPEtQ~iLp~----L~sDl~~l~~a~~~g~-L~--~~~~~~~~~~av~VVlAs~GYP~~~~~~~g~~i~~~~ 375 (485)
T PRK05784 303 IEYYSRLGDPEALNALYL----YEGDFYELFELAATGK-LH--KAERRFKEEPTVVKAIAPLGYPLRRDLATGRRIWVDW 375 (485)
T ss_pred EEEECCCCCCHHHHHHHH----HHCCHHHHHHHHHCCC-CC--CCCEEECCCCEEEEEEECCCCCCCCCCCCCCEEECCC
T ss_conf 999688788338889987----4263999999998199-88--7870476895699999469999975678995652684
Q ss_pred C--CCC-------CEEEECC--CCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECC
Q ss_conf 8--998-------4467776--0238770777684338999955998999999998765408826
Q gi|254780268|r 357 P--GGL-------GIRMDSA--SYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDG 410 (443)
Q Consensus 357 p--~~~-------gvRvDt~--~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~G 410 (443)
+ ... |++.+.+ +..|.. +--+++.|.|.++|.++..++++...-.|
T Consensus 376 ~~~~~~~~~vfhagt~~~~g~l~t~GGR--------VL~v~a~g~tl~eAr~~aY~~i~~I~f~g 432 (485)
T PRK05784 376 DSIRREGCLVYFGSVEVEGGKLVTLGSR--------ALEILAPGDTYEEAYEKAERCASAVKGDG 432 (485)
T ss_pred CCCCCCCCEEEEEEEEEECCEEEECCCC--------EEEEEEECCCHHHHHHHHHHHHHCCCCCC
T ss_conf 2223569789970438779989983692--------89999986989999999999985065999
No 51
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.94 E-value=1.4e-23 Score=187.76 Aligned_cols=364 Identities=21% Similarity=0.231 Sum_probs=234.1
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCE--EEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE
Q ss_conf 970686644709999999988880965--999858557718776758579991899853000698999999987099899
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGIP--TVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI 78 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi~--tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai 78 (443)
|--||||.+.|-=.--+..++.+-+-. .+.-+.++-.. ..+...+.+ +-.|++.|++.|+++++|.+
T Consensus 1 m~MkVLViGsGGREHAla~kl~~s~~~~~~~~g~gn~g~~----~~~~~~~~~-------~~~d~~~i~~~a~~~~idLv 69 (435)
T PRK06395 1 MTMKVMLVGSGGREDAIARAIKRSGAILFSVIGHENPSIK----KLSKKYLFY-------DEKDYDLIEDFALKNNVDIV 69 (435)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCHHHH----HHCCCCCCC-------CCCCHHHHHHHHHHCCCCEE
T ss_conf 9877999887889999999985598844999899967877----623234656-------85699999999998499999
Q ss_pred ECCCCHHHCCHH---HHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHCCCCHHH
Q ss_conf 458531310976---668898459216268989998721899887766422443-3243334557999873200330122
Q gi|254780268|r 79 HPGYGFLSENAK---FAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIP-VVPGSGEVYPHTAMPIAKEIGFPVL 154 (443)
Q Consensus 79 hPGyGfLsEn~~---fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP-~~p~~~~~~~~ea~~~a~~iGyPvi 154 (443)
.+|- |.+- ++..++++|++.+||+.++.++.++|..+|++|+++||| ++++....+..++..+..+.++|++
T Consensus 70 vvGP----E~pL~~Gi~D~l~~~gi~vFGP~k~aA~LE~SK~FaK~fm~~~~IP~ta~~~~~~~~~ea~~~~~~~~~piV 145 (435)
T PRK06395 70 FVGP----DPVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSEKDAARDYITSMKDVA 145 (435)
T ss_pred EECC----CHHHHCCHHHHHHHCCCCEECCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 9897----678866145599768994668428873263279889999998099856645323999999999997099848
Q ss_pred HHCCCCCCCCEEEEEEEC-HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 000234578216888750-6689999987543212589981688443420110331577734787023656654211356
Q gi|254780268|r 155 VKASAGGGGRGMRIAYSE-NDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRN 233 (443)
Q Consensus 155 iKp~~gGGG~Gi~vv~~~-~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~ 233 (443)
|||...-+|||+.++.+. +...++.+.+.. ... .++.|+||+|+.| .|+.+.++.||. ++++++ +.| -|
T Consensus 146 IKadGLAaGKGV~V~~~~~~~~~ea~~~~~~-~~~--~~~~vvIEE~L~G-~E~S~~a~~dG~-~~~~lp----~aq-Dh 215 (435)
T PRK06395 146 VKPIGLTGGKGVKVTGEQLNSVDEAIRYAIE-ILD--RDGVVLIEKKMTG-EEFSLQAFSDGK-HLSFMP----IVQ-DY 215 (435)
T ss_pred EEECCCCCCCCEEEECCCHHHHHHHHHHHHH-HHH--CCCEEEEEEEEEC-CEEEEEEEECCC-EEEECC----CCC-CC
T ss_conf 9734225789648955857789999999998-873--4885999999844-168999997699-558587----301-25
Q ss_pred CEEEE------------ECCC----CCCCHHHHHHHHHHH---HHHHHHHC--CCCCCEEEEEECCCCEEEEECCCCC--
Q ss_conf 22554------------0344----558899999999999---99886515--4341024589728834998227654--
Q gi|254780268|r 234 QKIWE------------EAHS----PVISAQDRTEIGETC---VKAMKKID--YRGAGTIEFLYENGQFYFIEMNTRL-- 290 (443)
Q Consensus 234 qkiiE------------eaPa----p~l~~~~~~~i~~~A---~~~~~~~g--~~g~~tvEFl~~~~~~yflEvN~Rl-- 290 (443)
.++-| .+|+ |.+++++.+++.... ++..+.-| |+|+-=+.+|++++.+|+||.|.|+
T Consensus 216 KR~~dgD~GPNTGGMGaysp~~~~~p~l~~~~~e~~~~Ii~pti~~l~~eg~~y~GvLy~GlMit~~gpkVlEyN~RfGD 295 (435)
T PRK06395 216 KRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTPNGVKVIEINARFAD 295 (435)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEEECCCC
T ss_conf 33447999999998745688888874327789999999999999999964997089987789850899648998620388
Q ss_pred ---CCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHCCCCC-CCCCCCCCCCEEE--EECCCCC---
Q ss_conf ---3320167886325620112322210222221133332-0124533024566-2211112442158--8668998---
Q gi|254780268|r 291 ---QVEHPVTEAITGIDLVHEQIYVASENRLSVQQKDITF-SGHAIECRINAED-PENFIPNPGEITY--FHAPGGL--- 360 (443)
Q Consensus 291 ---qveh~vte~~tgvdlv~~~~~~a~g~~l~~~~~~i~~-~g~aie~Ri~aEd-p~~f~Ps~G~i~~--~~~p~~~--- 360 (443)
||=-|. -.-||++....++.|. |+. ++.. +.+++-+=+-+.. |. .|..|.+.- -..+.+.
T Consensus 296 PE~QviLp~----L~~Dl~~ll~a~~~g~-L~~---~~~~~~~~~v~vvlas~GYP~--~~~kg~i~i~~~~~~~~~~vf 365 (435)
T PRK06395 296 PEGINVLYL----LKSDFVETLHQIYSGN-LNG---SIKFERKATVLKYIVPPGYGE--NPSPGRIKIDKTIFDSNSDVY 365 (435)
T ss_pred CHHHHHHHH----HCCCHHHHHHHHHCCC-CCC---CCEEECCCEEEEEEECCCCCC--CCCCCCEECCCCCCCCCCEEE
T ss_conf 068888776----0052999999997088-887---754306987999997788887--780876325644457999899
Q ss_pred --CEEEECC--CCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCE
Q ss_conf --4467776--0238770777684338999955998999999998765408
Q gi|254780268|r 361 --GIRMDSA--SYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEII 407 (443)
Q Consensus 361 --gvRvDt~--~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~ 407 (443)
|+..+.+ +..|.. +--+++.|.|.++|.+++.+.++...
T Consensus 366 hagt~~~~~~l~t~GGR--------Vl~v~a~g~sl~eA~~~aY~~i~~I~ 408 (435)
T PRK06395 366 YASVSGTLNDVKTSGSR--------SLAIIAKGDSIPEASEKVDSDLNAVH 408 (435)
T ss_pred EEEEEEECCEEEECCCC--------EEEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf 81677679939982384--------89999987999999999999984315
No 52
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=1e-24 Score=196.00 Aligned_cols=248 Identities=23% Similarity=0.319 Sum_probs=187.4
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC-CCCHHHCCHHHH
Q ss_conf 9999998888096599985855771877675857999189985300069899999998709989945-853131097666
Q gi|254780268|r 14 ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP-GYGFLSENAKFA 92 (443)
Q Consensus 14 a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP-GyGfLsEn~~fa 92 (443)
|--++++.+..++....++...+... ++.... . -..-.++|-++| +-||.-|+....
T Consensus 23 a~~v~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~--------~----~~~~~~~~vvfp~lhG~~gEDg~iq 80 (317)
T COG1181 23 AKAVLRALKGFGYDVTPVDITEAGLW----------MLDKEV--------T----KRVLQKADVVFPVLHGPYGEDGTIQ 80 (317)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCEE----------EECCCH--------H----HHHHCCCCEEEEECCCCCCCCCHHH
T ss_conf 89999987614871588732466327----------850310--------1----2220269877871558888870699
Q ss_pred HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCC----HHHHHHHHHCCCCHHHHHCCCCCCCCEEEE
Q ss_conf 8898459216268989998721899887766422443324333455----799987320033012200023457821688
Q gi|254780268|r 93 EILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVY----PHTAMPIAKEIGFPVLVKASAGGGGRGMRI 168 (443)
Q Consensus 93 ~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~----~~ea~~~a~~iGyPviiKp~~gGGG~Gi~v 168 (443)
..++..|++++|++..+-...+||..+|++++..|+|++++..... .....+..+..+||++|||+..|++.|+..
T Consensus 81 g~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~ 160 (317)
T COG1181 81 GLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRSP 160 (317)
T ss_pred HHHHHHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEEE
T ss_conf 99997099876076445332350999988998678651235675334520478887741468878998587311367998
Q ss_pred EEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCC-CCCC----------CCCCCCCCCCCCCEEE
Q ss_conf 8750668999998754321258998168844342011033157773478-7023----------6566542113562255
Q gi|254780268|r 169 AYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMG-NAIH----------FGERDCSVQRRNQKIW 237 (443)
Q Consensus 169 v~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g-~~v~----------l~erdCSiQrr~qkii 237 (443)
|++.+|+.++++.+... |.++++|+|+. .|+|||.++++... .+.. ++.|+.+-..-. ...
T Consensus 161 v~~~~d~~~~~e~a~~~------d~~vl~e~~~~-~rei~v~vl~~~~~~~~l~~~eI~~~~~~fydye~Ky~~~g-g~~ 232 (317)
T COG1181 161 VNVEGDLQSALELAFKY------DRDVLREQGIT-GREIEVGVLGNDYEEQALPLGEIPPKGEEFYDYEAKYLSTG-GAQ 232 (317)
T ss_pred CCEECCHHHHHHHHHHH------CCCCEECCCCC-CCEEEEEECCCCCCCEECCCCEEECCCCEEEEEECCCCCCC-CCE
T ss_conf 83504369999999984------78512003776-65589863588655244476168169986986000145789-843
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCEEEEECCCCCCC
Q ss_conf 40344558899999999999998865154341024589728--83499822765433
Q gi|254780268|r 238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYEN--GQFYFIEMNTRLQV 292 (443)
Q Consensus 238 EeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~--~~~yflEvN~Rlqv 292 (443)
...|+ .+++++.++++++|+++++++||.|+++|+|++++ |++|+|||||.=+-
T Consensus 233 ~~~pa-~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~ 288 (317)
T COG1181 233 YDIPA-GLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGM 288 (317)
T ss_pred EECCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCCCC
T ss_conf 53788-999889999999999999860888758887999878998999987089987
No 53
>TIGR00877 purD phosphoribosylamine--glycine ligase; InterPro: IPR000115 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) catalyzes the second step in the de novo biosynthesis of purine: ATP + 5-phosphoribosylamine + glycine = ADP + P_i + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART.; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process.
Probab=99.92 E-value=6.2e-23 Score=183.26 Aligned_cols=374 Identities=24% Similarity=0.339 Sum_probs=244.5
Q ss_pred EEEEECCCH--HHHHHHHHHH-HCCCEEEEEC-CCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEE
Q ss_conf 686644709--9999999888-8096599985-85577187767585799918998530006989999999870998994
Q gi|254780268|r 4 KILIANRGE--IALRILRACK-ELGIPTVAVH-STADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH 79 (443)
Q Consensus 4 ~iLianrGe--ia~riira~~-elGi~tv~v~-s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daih 79 (443)
||||.+.|= =|+ ..++. .--...+.+. -|+=+.-.. ..+.+.+...+ +--|++.|++.|++.++|.+.
T Consensus 2 kVLviG~GGREHAl--a~~l~qs~~v~~~~~apGN~Gta~~~---~~~~~~~~~~~---~~~d~~~~~~FA~~~~idL~~ 73 (459)
T TIGR00877 2 KVLVIGNGGREHAL--AWKLAQSPLVKYVYVAPGNAGTARLA---KNKNVAIEITK---DVRDIEALVEFAKKKKIDLAV 73 (459)
T ss_pred EEEEECCCHHHHHH--HHHHHCCCCCCEEEEECCCCCCCCCH---HHHHHCCCCCC---CHHHHHHHHHHHHHCCCCEEE
T ss_conf 58997487058999--99873271133667826898622012---54441145786---630089999999846975488
Q ss_pred CCCCHHHCCH---HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHCCCCH--H
Q ss_conf 5853131097---6668898459216268989998721899887766422443-32433345579998732003301--2
Q gi|254780268|r 80 PGYGFLSENA---KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIP-VVPGSGEVYPHTAMPIAKEIGFP--V 153 (443)
Q Consensus 80 PGyGfLsEn~---~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP-~~p~~~~~~~~ea~~~a~~iGyP--v 153 (443)
.|- |-+ -+...++++||+..||+-+|-++.++|..+|++|+++||| |+.|....+++++.++.++.|.| +
T Consensus 74 iGP----E~PL~~G~vd~le~~Gi~~FGP~k~AA~LE~SK~FaK~fm~~~gIPGta~Y~~Ft~~eea~~y~~~~g~PA~~ 149 (459)
T TIGR00877 74 IGP----EAPLVLGLVDALEEAGIPVFGPTKEAAQLEASKAFAKDFMKRYGIPGTAEYEVFTDPEEAKSYIQEKGAPAEI 149 (459)
T ss_pred ECC----CCCHHHHHHHHHHHCCCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCE
T ss_conf 087----4101201477898679514568878864332878999999964898322210008989999999841889748
Q ss_pred HHHCCCCCCCCEEEEE----EECHHHHHHHHHHHHHHHCCCCC--CCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCC
Q ss_conf 2000234578216888----75066899999875432125899--81688443420110331577734787023656654
Q gi|254780268|r 154 LVKASAGGGGRGMRIA----YSENDLSEAIDQARSEALAAFGN--DAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDC 227 (443)
Q Consensus 154 iiKp~~gGGG~Gi~vv----~~~~el~~a~~~a~~ea~~~fgd--~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdC 227 (443)
||||.-.-+|||+.|| .+.+|-.++++..+.. +.||+ .+|+||+|++|. |+.++++.||+ ++++++
T Consensus 150 VVKadGLAAGKGV~V~Ge~L~~~eEA~~~~~~~~~~--~~FG~a~~~VVIEEfL~G~-E~S~~~~~DG~-~v~Plp---- 221 (459)
T TIGR00877 150 VVKADGLAAGKGVIVAGEQLKTNEEAIKAVEEILEQ--KAFGEAGERVVIEEFLEGE-EVSLLAFVDGK-TVIPLP---- 221 (459)
T ss_pred EEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHC--CCCCCCCCCEEEEECCCCC-CEEEEEEECCC-EEEECC----
T ss_conf 980566657986268476027478999999999854--7656668825896424880-08999997486-677054----
Q ss_pred CCCCCCCEEEE-------------ECCCC---CCCHHHHHHH----HHHHHHHHHHHC--CCCCCEEEEEEC-CCC---E
Q ss_conf 21135622554-------------03445---5889999999----999999886515--434102458972-883---4
Q gi|254780268|r 228 SVQRRNQKIWE-------------EAHSP---VISAQDRTEI----GETCVKAMKKID--YRGAGTIEFLYE-NGQ---F 281 (443)
Q Consensus 228 SiQrr~qkiiE-------------eaPap---~l~~~~~~~i----~~~A~~~~~~~g--~~g~~tvEFl~~-~~~---~ 281 (443)
..|. |.-+.| -||+| .+++++.+++ .+-+++.+++=| |+|+-=.+||+. +|+ +
T Consensus 222 ~aQD-hKR~~egD~~GpNTGGMGAYsP~phlL~~~~e~~~~~~~~I~~pt~~~l~~eG~~y~GvLYaglMl~~~G~~L~P 300 (459)
T TIGR00877 222 PAQD-HKRALEGDKKGPNTGGMGAYSPAPHLLVFTEEVEKRIAEEIVEPTVKALRKEGTPYKGVLYAGLMLTKEGGVLVP 300 (459)
T ss_pred CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEE
T ss_conf 2157-650466888788557863302787844237178999987778999999985289724787413899768988644
Q ss_pred EEEECCCCC-----CCCCHHHHHHHC--CCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHCCC------CCC-CCC--
Q ss_conf 998227654-----332016788632--5620112322210222221133332-01245330245------662-211--
Q gi|254780268|r 282 YFIEMNTRL-----QVEHPVTEAITG--IDLVHEQIYVASENRLSVQQKDITF-SGHAIECRINA------EDP-ENF-- 344 (443)
Q Consensus 282 yflEvN~Rl-----qveh~vte~~tg--vdlv~~~~~~a~g~~l~~~~~~i~~-~g~aie~Ri~a------Edp-~~f-- 344 (443)
++||.|-|- |. |--.. - =||++....++.|. |+...-+..+ +..|+-.=+=| +-| .++
T Consensus 301 kVlEfN~RFGDPEtq~---vL~lL-~dqsdL~e~~~a~~eg~-L~d~~~~~~~~~~~av~VvlA~GalkGR~~~~~GYP~ 375 (459)
T TIGR00877 301 KVLEFNVRFGDPETQA---VLPLL-KDQSDLLEVCLAAVEGK-LDDSEVELRFDNRAAVTVVLASGALKGREYLKEGYPE 375 (459)
T ss_pred EEEEECCCCCCHHHHH---HHHHH-CCCCCHHHHHHHHHCCC-CCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 7889705278853444---64542-38888899999984566-6564112488178359999804753256778887788
Q ss_pred CCCCC-CEEE-EECCCCC-------C--EEEECC--CCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECCC
Q ss_conf 11244-2158-8668998-------4--467776--02387707776843389999559989999999987654088263
Q gi|254780268|r 345 IPNPG-EITY-FHAPGGL-------G--IRMDSA--SYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGI 411 (443)
Q Consensus 345 ~Ps~G-~i~~-~~~p~~~-------g--vRvDt~--~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv 411 (443)
.|..| .|+- ...-... | +.-|.+ +.+|.. +.-|++.|.|-.+|.+++.++++...-+|.
T Consensus 376 ~~~~G~~I~Gd~~~~~~~~~~vf~Ag~~~~~~~g~~vt~GGR--------VL~V~a~g~~l~eA~~~Ay~a~~~i~f~G~ 447 (459)
T TIGR00877 376 DYRKGDPITGDEEEAEAEGVKVFHAGTKTEQDNGKLVTNGGR--------VLAVVALGKDLEEARERAYEAVEKIKFEGM 447 (459)
T ss_pred CCEEEEEECCCCHHHHCCCCEEEECCEEEEECCCEEEECCCE--------EEEEEECCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 860122652671897526978997332576208737971873--------999983262578999999998875137987
No 54
>pfam08443 RimK RimK-like ATP-grasp domain. This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK.
Probab=99.91 E-value=2.7e-23 Score=185.86 Aligned_cols=179 Identities=20% Similarity=0.299 Sum_probs=136.6
Q ss_pred HHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC-CCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCC
Q ss_conf 2189988776642244332433345579998732003-301220002345782168887506689999987543212589
Q gi|254780268|r 113 MGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEI-GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFG 191 (443)
Q Consensus 113 ~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~i-GyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fg 191 (443)
+.||..+|++++++|||+|++....+.+++..+++++ |||+|+||++||||+|+.++++++++.++++.+...
T Consensus 1 a~DK~~tk~ll~~~Gip~P~~~~~~~~~~~~~~~~~~~g~PvVvKP~~g~~g~gV~~v~~~~el~~~~~~~~~~------ 74 (190)
T pfam08443 1 ARDKAKSHQLLAKHGIPVPNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAEDEQSLEQLLEAFKWL------ 74 (190)
T ss_pred CCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHC------
T ss_conf 97889999999987979799899889999999999808983899678899984558860637777888888634------
Q ss_pred CCCEEEEEEEEE--EEECCEEEEEECCCCCCCCCCC---CCCCCCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 981688443420--1103315777347870236566---5421135-622554034455889999999999999886515
Q gi|254780268|r 192 NDAVYIEKYLEN--PRHIEVQIFGDGMGNAIHFGER---DCSVQRR-NQKIWEEAHSPVISAQDRTEIGETCVKAMKKID 265 (443)
Q Consensus 192 d~~vlvEk~i~~--~rhiEvqVl~D~~g~~v~l~er---dCSiQrr-~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g 265 (443)
++++++|+||++ .|++.+.|+++. ++...+| +.....+ ++-.. ..|. .|+++ +.+.|+++++++|
T Consensus 75 ~~~vlvqefI~~~~~~dirv~vi~~~---~~~~~~~~~~~~~~~~n~~~g~~-~~~~-~l~~e----~~e~a~~a~~alg 145 (190)
T pfam08443 75 KNQILVQEFIAEAGNRDIRCLVVGGE---VVGAIHRQSNEGDFRTNLHRGGV-AEPY-QLSQE----EEEIAIKAAQAMG 145 (190)
T ss_pred CCCEEEEEEEECCCCCEEEEEEECCC---EEEEEEEECCCCCCCCCCCCCCE-ECCC-CCCHH----HHHHHHHHHHHHC
T ss_conf 87377555660478854899996063---36789997466762143246862-4587-66889----9999999999738
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHH
Q ss_conf 43410245897288349982276543320167886325620112
Q gi|254780268|r 266 YRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQ 309 (443)
Q Consensus 266 ~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~ 309 (443)
+ |.+.|||+.+++.+|||||||+=+. +-.|.+||+|+.+.-
T Consensus 146 l-~~~gVD~~~~~~g~~vlEvN~~Pg~--~~~~~~~g~~i~~~i 186 (190)
T pfam08443 146 L-DVLGVDIFRSKRGLLVCEVNSSPGL--KGIERTTGINIAIKL 186 (190)
T ss_pred C-CEEEEEEEEECCCEEEEEECCCCCC--HHHHHHHCCCHHHHH
T ss_conf 9-9799999997996799996698460--478988794999999
No 55
>PRK06849 hypothetical protein; Provisional
Probab=99.89 E-value=1.5e-20 Score=166.26 Aligned_cols=279 Identities=15% Similarity=0.181 Sum_probs=199.6
Q ss_pred EEEEEE-CCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCC-CCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf 068664-47099999999888809659998585577187767585799918998-5300069899999998709989945
Q gi|254780268|r 3 SKILIA-NRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPS-SKDSYLNIQQIVAACEVTGADAIHP 80 (443)
Q Consensus 3 ~~iLia-nrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~-~~~sYldi~~ii~~a~~~~~daihP 80 (443)
|+|||- .|=..|+-++|.+.+.|.++++..+.+=..+-+-+..++.|.++.+. ..+.| +++|+++++++++|.+.|
T Consensus 5 ~tvLiTg~r~~~aL~laR~l~~~Gh~V~~aD~~~~~l~r~Sr~v~~~~~vP~P~~d~~~y--~~~Ll~Iv~~e~idl~IP 82 (387)
T PRK06849 5 KTVLITGARAPAALQLARSFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPKWDPNAY--IQALLSIVKRHNIDLLIP 82 (387)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCEEEEEECCCCCCCHHHH--HHHHHHHHHHHCCCEEEE
T ss_conf 779995886078999999998789979998489877542000011279869997898999--999999999838999997
Q ss_pred CCCHHHCCHH-HHHHHH--HCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH-CCCCHHHHH
Q ss_conf 8531310976-668898--459216268989998721899887766422443324333455799987320-033012200
Q gi|254780268|r 81 GYGFLSENAK-FAEILE--DHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAK-EIGFPVLVK 156 (443)
Q Consensus 81 GyGfLsEn~~-fa~~~e--~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~-~iGyPviiK 156 (443)
-. |..- +|+.-. .....++.|+.+.+..+-||..+-++++++|+|+|......+.+++..+.. ..+.|.++|
T Consensus 83 ~~----eev~~~a~~~~~l~~~~~~~~~d~~~l~~LhdK~~F~~~a~~lGl~vP~T~~i~s~edv~~~~~~~~~~~~ilK 158 (387)
T PRK06849 83 TC----EEVFYLSLAKEELSAYCHVFHFDFDLLLMLHNKFEFIQQARSLGLSAPKTYLITDPEAIINFDFKTPHTPYVLK 158 (387)
T ss_pred CC----CHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHCCCCCCEEEC
T ss_conf 77----68999986576447676376589999998644899999999749999988981899999865533668978982
Q ss_pred CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 02345782168887506689999987543212589981688443420110331577734787023656654211356225
Q gi|254780268|r 157 ASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKI 236 (443)
Q Consensus 157 p~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qki 236 (443)
|.++.+|+++....+++++... ....+.+.++.+||+|. ++=..-+.+ +|.+++... -++.. -
T Consensus 159 Pv~~~~~~~v~~~~~~~~l~~l---------~~s~~~p~v~Qe~I~G~-~~ct~al~~-~Gkv~A~~~----y~~~~--~ 221 (387)
T PRK06849 159 PIYSRFVRRVDLTKTKAAVLKL---------PISHKSPWIMQEFIPGQ-EYCSYSIVR-SGELRAHSC----YKPEF--T 221 (387)
T ss_pred CCCCCCCCEEEECCCHHHHHCC---------CCCCCCCEEEEEECCCC-EEEEEEEEE-CCEEEEEEE----EECCE--E
T ss_conf 3766653336521597786158---------87667982899871696-758999978-999999998----20422--0
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHH
Q ss_conf 54034455889999999999999886515434102458972-883499822765433201678863256201123222
Q gi|254780268|r 237 WEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVA 313 (443)
Q Consensus 237 iEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a 313 (443)
+--+-+.....-...++.+...++++.++|.|...+||+.+ +|++|.||+|||+ .+||.|-..+-.+|
T Consensus 222 ~~~g~~v~fe~v~~p~i~e~v~~f~~~~~~tG~isFDFI~~~dG~~~~IECNPR~---------tSgi~lf~~~~~~a 290 (387)
T PRK06849 222 AGLGAQIAFQPINNPRIEEFVTHFVKELNYTGQISFDFIQTENGDAYPIECNPRT---------TSGLHLFDDHPGIL 290 (387)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEECCCC---------CCCEEEECCCHHHH
T ss_conf 5884057889758889999999999847851589999999899988999845986---------66446515875589
No 56
>pfam02655 ATP-grasp_3 ATP-grasp domain. No functional information or experimental verification of function is known in this family. This family appears to be an ATP-grasp domain (Pers. obs. A Bateman).
Probab=99.86 E-value=2.2e-21 Score=172.23 Aligned_cols=156 Identities=21% Similarity=0.311 Sum_probs=114.1
Q ss_pred HHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCC
Q ss_conf 21899887766422443324333455799987320033012200023457821688875066899999875432125899
Q gi|254780268|r 113 MGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGN 192 (443)
Q Consensus 113 ~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd 192 (443)
+.||..++++++++|||||++....+.+ .++||+++||.+|+||+|++++++.+++.+..
T Consensus 1 A~DK~~t~~~l~~~gip~P~~~~~~~~~-------~~~~P~VvKP~~g~gs~Gv~~v~~~~~l~~~~------------- 60 (160)
T pfam02655 1 ASDKLKTYKALKNAGVPTPETLSAEEPT-------EEEKKYIVKPRDGCGGEGVRFVENGREDEEFI------------- 60 (160)
T ss_pred CCCHHHHHHHHHHCCCCCCCEEECCCHH-------HCCCCEEEECCCCCCCCCEEEEECHHHHHHHC-------------
T ss_conf 9898999999998795999998657823-------55998999808989873189994899986532-------------
Q ss_pred CCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHHHHHH-CCCCC
Q ss_conf 81688443420110331577734787023656654211356225--5403445588999999999999988651-54341
Q gi|254780268|r 193 DAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKI--WEEAHSPVISAQDRTEIGETCVKAMKKI-DYRGA 269 (443)
Q Consensus 193 ~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qki--iEeaPap~l~~~~~~~i~~~A~~~~~~~-g~~g~ 269 (443)
+.+++|+||+| +|+.+.+++|+.+..+....|...-....... -..+|++. ....++.+++.++++++ ++.|.
T Consensus 61 ~~~liqe~i~G-~e~sv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~l~~~~G~ 136 (160)
T pfam02655 61 ENVIIQEFIEG-EPLSVSLLSDGEKALPLSVNRQLIDNAGSGFVYAGNLTPSRT---ELKEELEELAEEVVEALPGLRGY 136 (160)
T ss_pred CCEEEEEEEEC-CEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEECCC---CCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 56588747944-423899999899999999857885147864210376301375---88899999999999984387564
Q ss_pred CEEEEEECCCCEEEEECCCCCCC
Q ss_conf 02458972883499822765433
Q gi|254780268|r 270 GTIEFLYENGQFYFIEMNTRLQV 292 (443)
Q Consensus 270 ~tvEFl~~~~~~yflEvN~Rlqv 292 (443)
.+|||+++++++|++|||||++-
T Consensus 137 ~~vd~~~~~~~~~viEiNpR~s~ 159 (160)
T pfam02655 137 VGVDLVLTDNGPYVIEVNPRITT 159 (160)
T ss_pred EEEEEEEECCEEEEEEEECCCCC
T ss_conf 88899999990899999688778
No 57
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.86 E-value=2.4e-19 Score=157.78 Aligned_cols=272 Identities=21% Similarity=0.242 Sum_probs=186.4
Q ss_pred EEEEECCCHH---HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf 6866447099---9999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r 4 KILIANRGEI---ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP 80 (443)
Q Consensus 4 ~iLianrGei---a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP 80 (443)
||.|..|.+= ..|+..+|++.|.+...+ ++......+....-.+ .|-+. .-...|+|+|
T Consensus 2 ki~iLs~~~~~yst~RL~eaa~~rGh~v~vi--dp~~~~~~i~~~~~~v---------~~~g~-------~L~~~Davip 63 (300)
T PRK10446 2 KIAILSRDGTLYSCKRLREAAIQRGHLVEIL--DPLSCYMNINPAASSI---------HYKGR-------KLPHFDAVIP 63 (300)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEE--EHHHCEEEECCCCCEE---------EECCE-------ECCCCCEEEE
T ss_conf 7999936997607999999999879959996--1489189824898649---------98980-------8687888998
Q ss_pred CCCHHH--CCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC-CCHHHHHC
Q ss_conf 853131--097666889845921626898999872189988776642244332433345579998732003-30122000
Q gi|254780268|r 81 GYGFLS--ENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEI-GFPVLVKA 157 (443)
Q Consensus 81 GyGfLs--En~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~i-GyPviiKp 157 (443)
--|.-. ....+-+.+|..|+..+ -++++|+.+.||..+-+++.++|+|+|+.....+++++.++.+++ |+|+++||
T Consensus 64 R~g~~~t~~~~~vLr~lE~~Gv~vi-N~~~aI~~~~DKl~t~qlL~~~gip~P~T~~~~~~~~~~~~i~~~gg~PvViKp 142 (300)
T PRK10446 64 RIGTAITFYGTAALRQFEMLGSYPL-NESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKL 142 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEE-CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEE
T ss_conf 2677745589999999998899186-489999985769999999987597999889836999999999980899789996
Q ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE--EECCEEEEEECCCCCCCCCCCCC---CCCC-
Q ss_conf 23457821688875066899999875432125899816884434201--10331577734787023656654---2113-
Q gi|254780268|r 158 SAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENP--RHIEVQIFGDGMGNAIHFGERDC---SVQR- 231 (443)
Q Consensus 158 ~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~--rhiEvqVl~D~~g~~v~l~erdC---SiQr- 231 (443)
.+|..|+|+.++++.+++...++.-... +..+++.+||+.+ |.+-|-|+++ .++.-..|-- ++..
T Consensus 143 l~Gs~G~GV~l~e~~~~~~~i~~~~~~~------~~~~~iQeyI~~~~g~D~Rv~vvgg---~vvaam~R~~~~g~~rtN 213 (300)
T PRK10446 143 VEGTQGIGVVLAETRQAAESVIDAFRGL------NAHILVQEYIKEAQGCDIRCLVVGD---EVVAAIERRAKEGDFRSN 213 (300)
T ss_pred CCCCCCCCEEEEECHHHHHHHHHHHHHC------CCCEEEEEECCCCCCCCEEEEEECC---EEHHHEEEECCCCCEEEE
T ss_conf 7898860369973789999999988622------8737752202555798679999998---624438997378834777
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHH
Q ss_conf 56225540344558899999999999998865154341024589728834998227654332016788632562011232
Q gi|254780268|r 232 RNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIY 311 (443)
Q Consensus 232 r~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~ 311 (443)
-||-- .-.|. .++++. .+.|.++++++|. ..+-|+.+.+++.+|++|||+- ..--=.+.+||+|+....+.
T Consensus 214 ~~~Gg-~~~~~-~l~~e~----~~la~~a~~~lgl-~~~GVDii~~~~g~~v~EVN~~--Pg~~gi~~~tgvdiA~~Ii~ 284 (300)
T PRK10446 214 LHRGG-AASVA-SITPQE----REIAIKAARTMAL-DVAGVDILRANRGPLVMEVNAS--PGLEGIEKTTGIDIAGKMIR 284 (300)
T ss_pred EECCC-EEEEC-CCCHHH----HHHHHHHHHHHCC-CEEEEEEEEECCCCEEEEECCC--HHHHHHHHHHCCCHHHHHHH
T ss_conf 70397-76532-899999----9999999998699-6899999882899889999387--42788988759898999999
Q ss_pred H
Q ss_conf 2
Q gi|254780268|r 312 V 312 (443)
Q Consensus 312 ~ 312 (443)
-
T Consensus 285 ~ 285 (300)
T PRK10446 285 W 285 (300)
T ss_pred H
T ss_conf 9
No 58
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.86 E-value=1.8e-19 Score=158.67 Aligned_cols=339 Identities=18% Similarity=0.229 Sum_probs=221.5
Q ss_pred EEEEEEC--CCHHHHHHHHHHHHCCCEEEEE--CCCHHHCCCCHHHCCEEEECCCCCCC---CHHCCHHHHHHHHHH--C
Q ss_conf 0686644--7099999999888809659998--58557718776758579991899853---000698999999987--0
Q gi|254780268|r 3 SKILIAN--RGEIALRILRACKELGIPTVAV--HSTADSGAMHVRLADESVCIGPPSSK---DSYLNIQQIVAACEV--T 73 (443)
Q Consensus 3 ~~iLian--rGeia~riira~~elGi~tv~v--~s~~D~~a~~~~~ADe~~~i~~~~~~---~sYldi~~ii~~a~~--~ 73 (443)
.|+|+++ --. +.-.|.++|+++..+ |.+.|-. ..|+..+...++..- ++ +|-..||+++.+ .
T Consensus 12 ~kiLviGvntR~----vveSA~klGf~V~sv~~y~~~Dl~----~~a~~~l~~r~~~~~~rfe~-~de~~li~~~~~~~~ 82 (389)
T COG2232 12 CKILVIGVNTRP----VVESASKLGFEVYSVQYYDPADLP----GDAISYLRERPGELLGRFEN-LDEQKLIEAAEDLAE 82 (389)
T ss_pred CEEEEEEECCHH----HHHHHHHCCEEEEEEEEECCCCCC----CCCCEEEEECCHHHCCCCCC-CCHHHHHHHHHHHHH
T ss_conf 438999623417----677877447189986753432366----42102788448545276558-898999999986445
Q ss_pred CCCE-EECCCCHHHCCHHHHHHHHHCCCEEECCCHH-HHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 9989-9458531310976668898459216268989-9987218998877664224433243334557999873200330
Q gi|254780268|r 74 GADA-IHPGYGFLSENAKFAEILEDHHIKFIGPSSE-HIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF 151 (443)
Q Consensus 74 ~~da-ihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~-ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGy 151 (443)
.+|+ +.|+=||-.++.. -+.+...+|.+|+ .+..+.+|.++.+.+..+|.|-++-. ..+....--+
T Consensus 83 dvD~~ii~~sg~e~l~~~-----g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~-------~~e~~~~gek 150 (389)
T COG2232 83 DVDAPIIPFSGFEALRTS-----GELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEK-------KIEPLEEGEK 150 (389)
T ss_pred HCCEEEEECCCCCCCCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHCCE
T ss_conf 324125403553212456-----7545644567827889998888865201010289997043-------2114440210
Q ss_pred HHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 12200023457821688875066899999875432125899816884434201103315777347870236566542113
Q gi|254780268|r 152 PVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQR 231 (443)
Q Consensus 152 PviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQr 231 (443)
|+++||+.|+||. +.++.-.++.. -..++..+||+| +|+.|.++++|.. +..+. |+-|-
T Consensus 151 t~IlKPv~GaGG~-~el~~~~Ee~~---------------~~~~i~Qefi~G-~p~Svs~is~g~~-a~~la---~N~Qi 209 (389)
T COG2232 151 TLILKPVSGAGGL-VELVKFDEEDP---------------PPGFIFQEFIEG-RPVSVSFISNGSD-ALTLA---VNDQI 209 (389)
T ss_pred EEEEEECCCCCCE-EEECCCCCCCC---------------CCCEEHHHHCCC-CEEEEEEEECCCC-EEEEE---EEEEE
T ss_conf 1477302378860-13100433458---------------766003343178-4137999735862-38999---70022
Q ss_pred CCCEEEEE---------CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHC
Q ss_conf 56225540---------344558899999999999998865154341024589728834998227654332016788632
Q gi|254780268|r 232 RNQKIWEE---------AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITG 302 (443)
Q Consensus 232 r~qkiiEe---------aPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tg 302 (443)
-.-+-.+. .|.|.. +. +++.+.|.-+...+|.+|.--|+|++.+..+|++|||||+|=+--..|+.+|
T Consensus 210 I~~~~~~~~~f~Y~GNlTP~~~~--~~-ee~e~la~elV~~lgL~GsnGVDfvl~d~gpyViEVNPR~qGt~e~iE~s~g 286 (389)
T COG2232 210 IDGLRGEYSQFVYKGNLTPFPYE--EV-EEAERLAEELVEELGLVGSNGVDFVLNDKGPYVIEVNPRIQGTLECIERSSG 286 (389)
T ss_pred ECCCCCCCCCCEECCCCCCCCCH--HH-HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 14532334441012676777650--26-8999999999998423566661068606885799956854523788898617
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCE
Q ss_conf 56201123222102222211333320124533024566221111244215886689984467776023877077768433
Q gi|254780268|r 303 IDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLI 382 (443)
Q Consensus 303 vdlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsml 382 (443)
++|+++.+..-.|+ ..+.+.++++|+-.=+||-.- -+.|-.-....+..|. .|..+.. +--+
T Consensus 287 iNl~~lHi~af~G~----LpEr~kpr~~a~krILyap~~-v~v~~l~~~~~~DiP~-----------~Gtviek--gePl 348 (389)
T COG2232 287 INLFRLHIQAFDGE----LPERPKPRGYACKRILYAPRT-VRVPILKLSWTHDIPR-----------PGTVIEK--GEPL 348 (389)
T ss_pred CCHHHHHHHHHCCC----CCCCCCCCEEEEEEEEECCCE-EECCCCCCCCCCCCCC-----------CCCCCCC--CCCE
T ss_conf 77899999984575----767777653477678864523-6613102552113798-----------9822579--9830
Q ss_pred EEEEEECCCHHHHHHHHHHHHH
Q ss_conf 8999955998999999998765
Q gi|254780268|r 383 AKLIVHGKNRKECMMRLNRALN 404 (443)
Q Consensus 383 aKiI~~g~~R~~Ai~~l~~aL~ 404 (443)
+-+|+.+.+|+.|.+-+.|...
T Consensus 349 ~sviA~~nt~~~a~~~~er~~e 370 (389)
T COG2232 349 CSVIASSNTRSGAESMAERLAE 370 (389)
T ss_pred EEEEECCCCHHHHHHHHHHHHH
T ss_conf 4655226877899999999999
No 59
>KOG0237 consensus
Probab=99.84 E-value=5.2e-18 Score=148.32 Aligned_cols=384 Identities=20% Similarity=0.235 Sum_probs=243.7
Q ss_pred CCEEEEEECCCHHHHHHHHHHHH-CCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEE
Q ss_conf 97068664470999999998888-09659998585577187767585799918998530006989999999870998994
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKE-LGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH 79 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~e-lGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daih 79 (443)
|.-++||++.|-=---+.-.+++ --+..|.+..---..+. .|. -+++ ...-+--|.+++.+.|+++++..|.
T Consensus 1 ~~~~vLviGsGgREHal~wkL~qSp~v~~v~vaPGn~G~a~----~~~-~~~~--~~dI~~~d~~ala~f~~e~~I~lVv 73 (788)
T KOG0237 1 ERVNVLVIGSGGREHALAWKLKQSPKVKKVYVAPGNGGTAS----GDA-SKVP--NLDISVADFEALASFCKEHNINLVV 73 (788)
T ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCC----CCC-CCCC--CCCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 94379997588427688887632875553898369887456----751-2375--5655765599999999874621899
Q ss_pred CCCCHHHCC---HHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC-HHHH
Q ss_conf 585313109---766688984592162689899987218998877664224433243334557999873200330-1220
Q gi|254780268|r 80 PGYGFLSEN---AKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF-PVLV 155 (443)
Q Consensus 80 PGyGfLsEn---~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGy-Pvii 155 (443)
||- |. +.++..+..+||...||+.++.++.++|..+|.+|.++||||+.|....+++++..+.++..| +++|
T Consensus 74 vGP----E~PL~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~~~~~~Vi 149 (788)
T KOG0237 74 VGP----ELPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSATDKALVI 149 (788)
T ss_pred ECC----CHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCEEE
T ss_conf 787----3265423566664058510174377777664178899889863998320264078799899998489856489
Q ss_pred HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCC--CCCEEEEEEEEEEEECCEEEEE--ECCCCCCCCCCCCCCCCC
Q ss_conf 002345782168887506689999987543212589--9816884434201103315777--347870236566542113
Q gi|254780268|r 156 KASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFG--NDAVYIEKYLENPRHIEVQIFG--DGMGNAIHFGERDCSVQR 231 (443)
Q Consensus 156 Kp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fg--d~~vlvEk~i~~~rhiEvqVl~--D~~g~~v~l~erdCSiQr 231 (443)
|+..-..|||+-+..+.+|.-+|++..+..- .|| ..+|.||++++|- ||.+++ ||+ ++..+. +-|.
T Consensus 150 KAdGLAAGKGViv~~~~~EA~eAv~sIl~~~--~fg~AG~tvViEE~LEGe---EvS~laftDG~-s~~~mp----~aQD 219 (788)
T KOG0237 150 KADGLAAGKGVIVAKSKEEAFEAVDSILVKK--VFGSAGKTVVIEELLEGE---EVSFLAFTDGY-SVRPLP----PAQD 219 (788)
T ss_pred EECCCCCCCCEEEECCHHHHHHHHHHHHHHH--HHCCCCCEEEHHHHCCCC---EEEEEEEECCC-CCCCCC----CCCC
T ss_conf 6055245771574054799999999998544--413566458611230762---57899985573-023388----5100
Q ss_pred CCCEEEE------------ECCCCCCCHHHHHHHHH----HHHHHHHHHC--CCCCCEEEEEECCCCEEEEECCCCC---
Q ss_conf 5622554------------03445588999999999----9999886515--4341024589728834998227654---
Q gi|254780268|r 232 RNQKIWE------------EAHSPVISAQDRTEIGE----TCVKAMKKID--YRGAGTIEFLYENGQFYFIEMNTRL--- 290 (443)
Q Consensus 232 r~qkiiE------------eaPap~l~~~~~~~i~~----~A~~~~~~~g--~~g~~tvEFl~~~~~~yflEvN~Rl--- 290 (443)
|..+.+ -+|+|.+++++.+.+++ -+++-.+.-| |.|+----+|+.++.+-+||.|-|-
T Consensus 220 -HKRl~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~~P~vLEfN~RFGDP 298 (788)
T KOG0237 220 -HKRLGDGDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKDGPKVLEFNVRFGDP 298 (788)
T ss_pred -HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCEEEEECCCCCC
T ss_conf -2553078999988886556547756989999999887667665787639962568765468835996079984013892
Q ss_pred --CCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC----CCEEEEECCCCCCEEE
Q ss_conf --3320167886325620112322210222221133332012453302456622111124----4215886689984467
Q gi|254780268|r 291 --QVEHPVTEAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNP----GEITYFHAPGGLGIRM 364 (443)
Q Consensus 291 --qveh~vte~~tgvdlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri~aEdp~~f~Ps~----G~i~~~~~p~~~gvRv 364 (443)
||--|.-|- ||.+....- ....|+-....++ -++.=.-+.|- +=.|.+ -.|+.+..+..++.||
T Consensus 299 EtQv~l~lLes----DL~evi~a~-~~~~L~~~~i~w~--~~sa~~VV~as---~gYP~sy~KG~~It~~~~~~~~~~rV 368 (788)
T KOG0237 299 ETQVLLPLLES----DLAEVILAC-CNGRLDTVDIVWS--KKSAVTVVMAS---GGYPGSYTKGSIITGLPEADRPGTRV 368 (788)
T ss_pred HHHHHHHHHHH----HHHHHHHHH-HHCCCCCCCCCCC--CCCEEEEEEEC---CCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 06565987876----799999998-6187455675411--46148999905---89898776876301676667876269
Q ss_pred EC---CCCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECC--CCCCHHHH
Q ss_conf 77---60238770777684338999955998999999998765408826--37788899
Q gi|254780268|r 365 DS---ASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDG--IKTTIPLF 418 (443)
Q Consensus 365 Dt---~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~G--v~TN~~~l 418 (443)
-. +++++..+.-- .-+--+.+.+++-.+|.++...+++.....| ..|.|.|.
T Consensus 369 FHAGTs~~ss~vvTNG--GRVLsVTA~~~~L~sA~e~Ayk~v~~I~Fsg~~yRkDI~~r 425 (788)
T KOG0237 369 FHAGTSLDSSNVVTNG--GRVLSVTATGDDLESAAETAYKAVQVISFSGKFYRKDIAWR 425 (788)
T ss_pred EECCCCCCCCCEEECC--CEEEEEEECCCHHHHHHHHHHHHHEEEEECCCCCCCHHHHH
T ss_conf 8625630245247538--65999971673099999999877618730552211034655
No 60
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family; InterPro: IPR004666 Escherichia coli RimK adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6. Mutation of the Glu-Glu terminus to Lys-Glu blocked addition. S6 has the C-terminal sequence Glu-Glu in few species, suggesting the homolog of rimK may have a function other than S6 modification in those species. However, most species having a member of this protein subfamily do not have an S6 homolog ending in Glu-Glu.; GO: 0006464 protein modification process.
Probab=99.83 E-value=9.8e-19 Score=153.44 Aligned_cols=270 Identities=19% Similarity=0.236 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC----CHHHC
Q ss_conf 99999999888809659998585577187767585799918998530006989999999870998994585----31310
Q gi|254780268|r 12 EIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY----GFLSE 87 (443)
Q Consensus 12 eia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy----GfLsE 87 (443)
+.-.++..+|.+.|+..=.|++........ .=|.-.++.-+.. ++| ---....|.+.+=. -+-+-
T Consensus 18 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~-~P~~~~I~~~~~~--~~~--------~~~~~~~d~~~~R~~TPWv~~~~ 86 (321)
T TIGR00768 18 YDEKMLKEAAEERGIDYKVVTPPEIVLTFN-QPAAFSIFYKEPR--KNK--------ELALAELDVVIVRIGTPWVSSFR 86 (321)
T ss_pred HHHHHHHHHHHHHCCCEEEECCHHHEECCC-CCCCCEEECCCCC--CCC--------HHHHCCCCEEEECCCCCCCCHHH
T ss_conf 899999999997179536760412200368-8851001114541--001--------02311788899838997511026
Q ss_pred CHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC--------CHHHHHHHHHCCC---CHHHHH
Q ss_conf 97666889845921626898999872189988776642244332433345--------5799987320033---012200
Q gi|254780268|r 88 NAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV--------YPHTAMPIAKEIG---FPVLVK 156 (443)
Q Consensus 88 n~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~--------~~~ea~~~a~~iG---yPviiK 156 (443)
+...++.+|..|+..| -++++|..++||..+...+.++|||+|.+.... +.+++..+.+++| ||+|+|
T Consensus 87 ~~~~~r~lE~~G~~~~-N~s~aI~~a~dK~~s~~~L~~~G~P~P~~~~~~PqnfDReW~~~~a~~~ie~~g~lEfP~V~K 165 (321)
T TIGR00768 87 GLAVLRALESLGVPVI-NSSQAILNAGDKVLSHQLLAKAGVPLPRTGVAGPQNFDREWSPEEALKLIEEIGQLEFPVVLK 165 (321)
T ss_pred HHHHHHHHHHCCCEEC-CCHHHHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 8899999985896310-706998621465899999995868987335736632243589889999998731764245871
Q ss_pred CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE--EEEE--CCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 0234578216888750668999998754321258998168844342--0110--33157773478702365665421135
Q gi|254780268|r 157 ASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLE--NPRH--IEVQIFGDGMGNAIHFGERDCSVQRR 232 (443)
Q Consensus 157 p~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~--~~rh--iEvqVl~D~~g~~v~l~erdCSiQrr 232 (443)
|+.|..|+++..+++++.++..++.-....- +.-...|+.+||+ .+.| |-+-|+||. ++.= ++|+
T Consensus 166 p~~GS~G~~V~l~~D~~~~~~~~e~~~~~~~--~~~~~~~~QeyI~Pv~~~grDIR~fVvGd~---v~aA------~~R~ 234 (321)
T TIGR00768 166 PVFGSWGRLVSLARDKQAAETLLEHFEQLNG--PQYKVFLVQEYIKPVKPGGRDIRVFVVGDE---VVAA------IYRI 234 (321)
T ss_pred CCCCCCCCEEEEEECHHHHHHHHHHHHHHCC--CCCCEEEEEEEECCCCCCCCEEEEEEECCC---EEEE------EEEC
T ss_conf 7856354268985067899999999972188--332357887201132578931899998892---0133------3541
Q ss_pred CC---------EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-----CEEEEECCCCCCCCCHHHH
Q ss_conf 62---------255403445588999999999999988651543410245897288-----3499822765433201678
Q gi|254780268|r 233 NQ---------KIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENG-----QFYFIEMNTRLQVEHPVTE 298 (443)
Q Consensus 233 ~q---------kiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~-----~~yflEvN~Rlqveh~vte 298 (443)
-+ +.=--.|+ .||++ +.+.|+|+++++|. +++-||++-++. .+.|+|||+=. |--=++
T Consensus 235 ~~~~~w~~N~a~GG~a~~~-~l~~e----~~~LA~ka~~a~g~-~v~giDlle~~~r~dw~GL~V~EVN~~~--~f~~~~ 306 (321)
T TIGR00768 235 ITSGHWRTNLARGGKAEPC-SLTEE----IEELAIKAAKALGL-DVAGIDLLESKDRDDWGGLLVLEVNANP--EFKNSV 306 (321)
T ss_pred CCCCCHHHHHHCCCCCCCC-CCCHH----HHHHHHHHHHHHCC-CEEEEEEEECCCCCCCCCCEEEEECCCC--CCCCCE
T ss_conf 7883024355438821245-25889----99999999999768-3489977662685425783799984997--700111
Q ss_pred HHHCCCCHHHHHHH
Q ss_conf 86325620112322
Q gi|254780268|r 299 AITGIDLVHEQIYV 312 (443)
Q Consensus 299 ~~tgvdlv~~~~~~ 312 (443)
++||||+....++-
T Consensus 307 ~~tgvniA~~l~~y 320 (321)
T TIGR00768 307 KTTGVNIAGKLLDY 320 (321)
T ss_pred EECCCCHHHHHHHH
T ss_conf 11167768999971
No 61
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX; InterPro: IPR011870 The family of proteins found in this family include the characterised LysX from Thermus thermophilus which is part of a well-organised lysine biosynthesis gene cluster . LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this family contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterised in Escherichia coli, and acts by ATP-dependent condensation of S6 with glutamate residues .; GO: 0003824 catalytic activity, 0005524 ATP binding, 0009085 lysine biosynthetic process.
Probab=99.83 E-value=2.8e-19 Score=157.30 Aligned_cols=247 Identities=23% Similarity=0.314 Sum_probs=175.7
Q ss_pred HHHHHHHCCCEEEEECCCHHHCCCCHHHC-CEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCC--HHHHH
Q ss_conf 99988880965999858557718776758-5799918998530006989999999870998994585313109--76668
Q gi|254780268|r 17 ILRACKELGIPTVAVHSTADSGAMHVRLA-DESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSEN--AKFAE 93 (443)
Q Consensus 17 iira~~elGi~tv~v~s~~D~~a~~~~~A-De~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn--~~fa~ 93 (443)
++..++++|+..=.||+..+..... ... ++.+ -+|+ +.+..+ |.+ .-.|.
T Consensus 15 L~e~l~~lg~~v~~i~~~~~~~~~~-d~~i~~~~----------~~dv------~i~R~V----------S~~R~L~~a~ 67 (289)
T TIGR02144 15 LLEELEKLGLQVRVIYVPELALPFG-DLGIKELE----------DLDV------AIIRNV----------SQSRALYSAF 67 (289)
T ss_pred HHHHHHHHCCCCEEEECCCEEECCC-CCCCCHHC----------CCCE------EEECHH----------HHHHHHHHHH
T ss_conf 9999987289732662034022078-85630003----------7556------898303----------4567999999
Q ss_pred HHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECH
Q ss_conf 89845921626898999872189988776642244332433345579998732003301220002345782168887506
Q gi|254780268|r 94 ILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSEN 173 (443)
Q Consensus 94 ~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~ 173 (443)
.+|+.|+.-| -++++|..||||+.+.-.+.++|||||.+....+.+.|+.+++++|||+++||+.|..||=+..+++.+
T Consensus 68 ~~E~~G~~~i-N~~~~i~~cgDK~~T~~~L~~~gvP~P~t~~a~d~~~A~~~~e~lGYPvV~KP~~GSWGRlV~~~~d~~ 146 (289)
T TIGR02144 68 LLEAVGVPTI-NSSHAIIACGDKIFTTLKLAKAGVPTPRTYIAFDREAALKAAEELGYPVVLKPVIGSWGRLVSKIRDKD 146 (289)
T ss_pred HHHHCCCEEE-CCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCHH
T ss_conf 9984897152-775898750461889999996678898358982868999999970898897088884378876403788
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE-EECCEEEEEECCCCCCC-------------CCCCCCCCCCCCCEEEEE
Q ss_conf 6899999875432125899816884434201-10331577734787023-------------656654211356225540
Q gi|254780268|r 174 DLSEAIDQARSEALAAFGNDAVYIEKYLENP-RHIEVQIFGDGMGNAIH-------------FGERDCSVQRRNQKIWEE 239 (443)
Q Consensus 174 el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~-rhiEvqVl~D~~g~~v~-------------l~erdCSiQrr~qkiiEe 239 (443)
+++..++. +|....+.-+=-||.+||..| |-|-+-|+||..=.+++ +|.|-
T Consensus 147 ~~~~llEh--~e~~~~~~~~~~y~QEfi~KPgRDIR~fViGd~~~~AIYR~~~P~~W~TNtArGG~A------------- 211 (289)
T TIGR02144 147 ELESLLEH--KEVLGGSQLKLYYVQEFINKPGRDIRVFVIGDEAIAAIYRYSEPNHWRTNTARGGKA------------- 211 (289)
T ss_pred HHHHHHHH--HHHHCCCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHCCCCC-------------
T ss_conf 98899999--998679763337999887188960899999797316788338853025563058844-------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-C-----CCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHH
Q ss_conf 34455889999999999999886515434102458972-8-----83499822765433201678863256201123222
Q gi|254780268|r 240 AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-N-----GQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVA 313 (443)
Q Consensus 240 aPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~-----~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a 313 (443)
.|++ |+++ +.+.|+|+++++| .++.-||-+=+ + |.+.++|||+=- |-==|-.+|||+..+..+..|
T Consensus 212 ~P~~-~~~e----~~~La~kA~~avg-g~~~~iDi~Es~~rqndW~GlLV~EVN~~~--EFKN~~rvTGvNva~~l~~ya 283 (289)
T TIGR02144 212 EPCK-IDEE----VEELAVKAAEAVG-GEVVGIDIVESKRRQNDWGGLLVNEVNGVP--EFKNTVRVTGVNVAEKLVEYA 283 (289)
T ss_pred CCCC-CCHH----HHHHHHHHHHHHC-CEEEEEEEEECCCCCCCCCCEEEEEECCCC--CCCCCEEECCCCHHHHHHHHH
T ss_conf 7887-6876----8999999999978-827899886433445443786897356897--727857774745378999999
Q ss_pred H
Q ss_conf 1
Q gi|254780268|r 314 S 314 (443)
Q Consensus 314 ~ 314 (443)
.
T Consensus 284 v 284 (289)
T TIGR02144 284 V 284 (289)
T ss_pred H
T ss_conf 9
No 62
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2; InterPro: IPR005862 The formation of isosinate, a precursor of adenylate and guanylate, from 5-phosphoribosyl 1-pyrophosphate in the de novo purine biosynthesis pathway is basically composed of 10 steps of reactions . Phosphoribosylglycinamide formyltransferase 2 (2.1.2 from EC) is an alternative enzyme to phosphoribosylglycinamide formyltransferase that catalyzes the third step in the de novo purine biosynthesis pathway. ; GO: 0016742 hydroxymethyl- formyl- and related transferase activity, 0009113 purine base biosynthetic process.
Probab=99.80 E-value=3e-17 Score=142.85 Aligned_cols=378 Identities=17% Similarity=0.221 Sum_probs=267.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 68664470999999998888096599985855771877675857999189985300069899999998709989945853
Q gi|254780268|r 4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG 83 (443)
Q Consensus 4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG 83 (443)
++|+.+.||+...+.-.++.+|++++++....+.. ..+.++..+.+ +.+|.+.+..+.++...|.+.|-.-
T Consensus 1 ~~~l~g~g~~g~~~~~~~~~lg~~~~~~d~~~~~p--~~~~~~~~~~~-------~~~d~~~~~~~~~~~~p~~~~p~~~ 71 (407)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYADAP--ALQVAHRSYVI-------DLLDGDALRAVIEREKPDYIVPEIE 71 (407)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCC--HHHHHHHHHHE-------ECCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 94661376533144444543471268733545762--13332111100-------0026789999987506741000244
Q ss_pred HHHCCHHHHHHHHHCC---CEEECCCHHHHHHHHCHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 1310976668898459---216268989998721899887766-422443324333455799987320033012200023
Q gi|254780268|r 84 FLSENAKFAEILEDHH---IKFIGPSSEHIKIMGDKITAKKTA-QQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASA 159 (443)
Q Consensus 84 fLsEn~~fa~~~e~~G---i~fIGPs~~ai~~~gDK~~~k~~a-~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~ 159 (443)
.++. +-.-.+++.| ...+ |+.++.....|+...|+++ +++|+|+.++....+.++....+.++|||+++||..
T Consensus 72 ~~~~--~~l~~~~~~gg~c~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~p~~~~p~~ 148 (407)
T TIGR01142 72 AIAT--DALLELEAEGGECYTVV-PTARATKLTLNREGLRRLAAEELGLPTAPYEFADSLEELREAVEKIGFPCVVKPVL 148 (407)
T ss_pred HHHH--HHHHHHHHCCCCEEEEE-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHH
T ss_conf 5546--66776652488246640-35202221210567787767763254220011101788999998607750001221
Q ss_pred CCCCCEEEEEEECHHHHHHHHHHH-----HHHHCCCCCCCEEEEEEEEEEEECCEEEEE--ECCCCCCCC----CCCCCC
Q ss_conf 457821688875066899999875-----432125899816884434201103315777--347870236----566542
Q gi|254780268|r 160 GGGGRGMRIAYSENDLSEAIDQAR-----SEALAAFGNDAVYIEKYLENPRHIEVQIFG--DGMGNAIHF----GERDCS 228 (443)
Q Consensus 160 gGGG~Gi~vv~~~~el~~a~~~a~-----~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~--D~~g~~v~l----~erdCS 228 (443)
+.+|+|..++++++++..+|+.+. ..+ ..+.+++++|.|++..-++..-.++ |+.|...++ |.++-.
T Consensus 149 ~~~g~g~~~~~~~~~~~~~w~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~g~~~~~ 226 (407)
T TIGR01142 149 SSSGKGQSVVRGPEDLEKAWEYAKGHQVQEGG--RGGAGRVIVEEFIDFDYEITLLTVRAVDGNGPLTTFCAPIGHRQED 226 (407)
T ss_pred CCCCCCCEEECCHHHHHHHHHHHHCCCCCCCC--CCCCCCEEEEECCCCHHHHHHHEEEECCCCCCEEEECCCCCCCCCC
T ss_conf 14666530004734567887665043101134--5555624552001310211000000027777501101322430015
Q ss_pred CCCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHH--CCCC
Q ss_conf 11356225540-34455889999999999999886515434102458972883499822765433201678863--2562
Q gi|254780268|r 229 VQRRNQKIWEE-AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAIT--GIDL 305 (443)
Q Consensus 229 iQrr~qkiiEe-aPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~t--gvdl 305 (443)
- . ..|. .|. .++.....+....+.++..++|-.|+.-+|+++..+++||.|+.||-.-.--+|-... ++.-
T Consensus 227 g--~---~~~~w~p~-~~~~~~~~~~~~~~~~~~~~lgg~g~~g~~~~~~g~~~~~~~~~p~p~~~g~~~~~~~pp~~~~ 300 (407)
T TIGR01142 227 G--D---YHESWQPQ-ELSEKALEEAKRIAKRVTDALGGYGLFGVELFVKGDEVWFSEVSPRPHDTGLVTLISQPPDLSE 300 (407)
T ss_pred C--C---CHHCCCCH-HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEECCCCCCCCCCEEEEEECCCCCHH
T ss_conf 5--4---00014621-2217889999999988887634664001445651661354204667666513787406887204
Q ss_pred HHHHHHHHHCCCCC--------CCCCCCCCCHHHHHHHCCCCCCC-CCCCCCCCE-EEEECCCCCCEEEECCCCCCCEEC
Q ss_conf 01123222102222--------21133332012453302456622-111124421-588668998446777602387707
Q gi|254780268|r 306 VHEQIYVASENRLS--------VQQKDITFSGHAIECRINAEDPE-NFIPNPGEI-TYFHAPGGLGIRMDSASYQGYTVP 375 (443)
Q Consensus 306 v~~~~~~a~g~~l~--------~~~~~i~~~g~aie~Ri~aEdp~-~f~Ps~G~i-~~~~~p~~~gvRvDt~~~~G~~i~ 375 (443)
....++...|.|++ ....-.+...+.+.......++. +..|....+ ..+..|. ..+|+-+.-.
T Consensus 301 ~~~~~~~~~g~p~~g~w~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~pp~~~~~~~~~~~~-~~~~~~g~p~------ 373 (407)
T TIGR01142 301 FALHLRAILGLPVPGEWVDGYRLIKQLGPGASAVILADGEGGKLAFGGAPPADALEDALGVPD-TDVRLFGKPE------ 373 (407)
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHCHHCCCCCCCCCCCCHHHHHHHHCCCC-CCEEEECCCC------
T ss_conf 665445542366675100111222211541001220000001122356773345565431554-3056621643------
Q ss_pred CCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEE
Q ss_conf 776843389999559989999999987654088
Q gi|254780268|r 376 SYYDSLIAKLIVHGKNRKECMMRLNRALNEIII 408 (443)
Q Consensus 376 ~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I 408 (443)
..-..-++-.++++++-+.+..+...+.....+
T Consensus 374 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 406 (407)
T TIGR01142 374 AKGGRRLGVALATAESVEAARERAEEVAHAVKV 406 (407)
T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 333321012220220368889888887765227
No 63
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=5.6e-16 Score=133.86 Aligned_cols=274 Identities=19% Similarity=0.283 Sum_probs=170.1
Q ss_pred HHHHHHHHHCCCEEEEECCCHHHC-CCCHHHCCEE-EECCCCCCCCHHCCHHHH--HHHHHHCCCCEEECC--CCHHHCC
Q ss_conf 999998888096599985855771-8776758579-991899853000698999--999987099899458--5313109
Q gi|254780268|r 15 LRILRACKELGIPTVAVHSTADSG-AMHVRLADES-VCIGPPSSKDSYLNIQQI--VAACEVTGADAIHPG--YGFLSEN 88 (443)
Q Consensus 15 ~riira~~elGi~tv~v~s~~D~~-a~~~~~ADe~-~~i~~~~~~~sYldi~~i--i~~a~~~~~daihPG--yGfLsEn 88 (443)
.+.+++++..|++-..++ +.+.. ....-.|-.. ..+... -.+..+.+ .......+.|++++= ..|-- .
T Consensus 20 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~~~-~ 93 (318)
T COG0189 20 FALMEAAQKRGHELAILD-DGDLSLRKGEIKALARLVEVGEV----IGLHYELIEEEDLSLLDELDVIIMRKDPPFDF-A 93 (318)
T ss_pred HHHHHHHHHHCCEEEEEC-CCCCCCCCCHHHHHHHHHHHHHH----CCCCCCCCCCCCHHHCCCCCEEEECCCCHHHH-H
T ss_conf 999887786073489971-65311451336888866532210----01012433310022203672899737860456-8
Q ss_pred HHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH-HHCCCCHHHHHCCCCCCCCEEE
Q ss_conf 766688984592162689899987218998877664224433243334557999873-2003301220002345782168
Q gi|254780268|r 89 AKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPI-AKEIGFPVLVKASAGGGGRGMR 167 (443)
Q Consensus 89 ~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~-a~~iGyPviiKp~~gGGG~Gi~ 167 (443)
..|++.+|..|..+| .+|.+|..+.||..+-+++.+.|+|+|+.....+.++...+ ++.+|||+|+||.+|.+|+|+.
T Consensus 94 ~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~ 172 (318)
T COG0189 94 TRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHLGFPVVLKPLDGSGGRGVF 172 (318)
T ss_pred HHHHHHHHHCCCEEE-CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCEE
T ss_conf 999999987498687-8879987635579999999965999998689658478899999746898899647888866559
Q ss_pred EEEECH-HHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEE-ECCEEEEEECCCCCCCCCCCCCCCCCCCCE--------EE
Q ss_conf 887506-68999998754321258998168844342011-033157773478702365665421135622--------55
Q gi|254780268|r 168 IAYSEN-DLSEAIDQARSEALAAFGNDAVYIEKYLENPR-HIEVQIFGDGMGNAIHFGERDCSVQRRNQK--------IW 237 (443)
Q Consensus 168 vv~~~~-el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~r-hiEvqVl~D~~g~~v~l~erdCSiQrr~qk--------ii 237 (443)
.|.+.+ ++.+..+...+.. ...+++.+||+.++ .+-.-+++|+ .++..+ .+||.-+. .-
T Consensus 173 ~v~~~d~~l~~~~e~~~~~~-----~~~~ivQeyi~~~~~~~rrivv~~~--~~~~~y----~~~R~~~~~~~R~N~a~G 241 (318)
T COG0189 173 LVEDADPELLSLLETLTQEG-----RKLIIVQEYIPKAKRDDRRVLVGGG--EVVAIY----ALARIPASGDFRSNLARG 241 (318)
T ss_pred EECCCCHHHHHHHHHHHCCC-----CCEEEEECCCCCCCCCEEEEEEECC--EEEEEE----EEECCCCCCCCEEECCCC
T ss_conf 94377656999999863455-----6429862034767787399999899--998987----120047777520101157
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHH
Q ss_conf 403445588999999999999988651543410245897288349982276543320167886325620112322
Q gi|254780268|r 238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYV 312 (443)
Q Consensus 238 EeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~ 312 (443)
-.+.+..|+++++ +.|++++.++| .++.-|+++.+++.+|++|||.-=.=-+ -.+.++|++......+.
T Consensus 242 g~~e~~~l~~e~~----elA~kaa~~lG-l~~~GVDiie~~~g~~V~EVN~sP~~~~-~i~~~~g~~~~~~~~~~ 310 (318)
T COG0189 242 GRAEPCELTEEEE----ELAVKAAPALG-LGLVGVDIIEDKDGLYVTEVNVSPTGKG-EIERVTGVNIAGLIIDA 310 (318)
T ss_pred CEECCCCCCHHHH----HHHHHHHHHHC-CCEEEEEEEEECCCEEEEEEECCCCCCC-CHHHCCCCCHHHHHHHH
T ss_conf 5204536999999----99999999748-9479999997089629999868965235-21430697679999999
No 64
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.73 E-value=1.2e-16 Score=138.59 Aligned_cols=261 Identities=22% Similarity=0.351 Sum_probs=168.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHH--HHHHHHHCCCCE--EE
Q ss_conf 68664470999999998888096599985855771877675857999189985300069899--999998709989--94
Q gi|254780268|r 4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQ--IVAACEVTGADA--IH 79 (443)
Q Consensus 4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~--ii~~a~~~~~da--ih 79 (443)
+||--|.+-|++ -.+||.+-+-+++=.-.|+- .|..++++.+.. -||..+ |++-|+..|+.. +-
T Consensus 195 SV~hdN~~Ai~l-----Y~kLgF~~~p~f~vKrkn~i-----Ne~lf~gp~~~~--~lnpya~ii~~ea~rrgi~vev~d 262 (547)
T TIGR03103 195 SVMHDNEQAIAL-----YEKLGFRRIPVFALKRKNAI-----NERLFSGPAPEA--DLNPYARIIVDEARRRGIEVEVLD 262 (547)
T ss_pred EECCCCHHHHHH-----HHHHCCEECCEEEEECCCCC-----CCCCCCCCCCCC--CCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf 010486889999-----99719755645788605756-----743246998644--578146887768986686489863
Q ss_pred CCCCHHH--CCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHC
Q ss_conf 5853131--09766688984592162689899987218998877664224433243334557999873200330122000
Q gi|254780268|r 80 PGYGFLS--ENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKA 157 (443)
Q Consensus 80 PGyGfLs--En~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp 157 (443)
+-.||+. -... .-.|.+. +.=+ +|+=++..+.||..+|+++.++|+|+|.+....+.+++.+|++++| ||+|||
T Consensus 263 ~~~g~f~l~~ggr-~i~cres-lSel-TSAvAms~c~DK~lT~rll~~AG~~VP~~~~~~~~~~~~~fl~~~G-~VVVKP 338 (547)
T TIGR03103 263 AEGGLFRLSLGGR-SIRCRES-LSEL-TSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNGEAVEAFLAEHG-AVVVKP 338 (547)
T ss_pred CCCCEEEEEECCE-EEEEECH-HHHH-HHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC-CEEECC
T ss_conf 8888589712890-6886120-2578-8899988740499999999973998999745699899999998739-999776
Q ss_pred CCCCCCCEEEE-EEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC----------------EEEEEECCCCCC
Q ss_conf 23457821688-8750668999998754321258998168844342011033----------------157773478702
Q gi|254780268|r 158 SAGGGGRGMRI-AYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE----------------VQIFGDGMGNAI 220 (443)
Q Consensus 158 ~~gGGG~Gi~v-v~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE----------------vqVl~D~~g~~v 220 (443)
.+|--|||+.+ +.+++++..||..|..++ +.|+||+|++|. ++- -+|+|||..++-
T Consensus 339 ~dGnqGrGVtvnl~t~eev~~A~~~A~~~~------~~VIVE~fi~G~-D~RlLVIggkVVAAA~R~Pa~VvGDG~sTI~ 411 (547)
T TIGR03103 339 VRGEQGKGISVDVRTPDDLEAAIAKARQFC------DRVLLERYVPGE-DLRLVVIDFEVVAAAVRRPPEVIGDGRSSIR 411 (547)
T ss_pred CCCCCCCCEEECCCCHHHHHHHHHHHHHHC------CCEEEEEEECCC-CEEEEEECCEEEEEECCCCCEEEECCHHHHH
T ss_conf 878888615872599999999999999759------957999840697-1699999999999981479679848662099
Q ss_pred CCCCCCCCCCCC-----CCEEEE---E--------------CC-------------------CCCCCHHHHHHHHHHHHH
Q ss_conf 365665421135-----622554---0--------------34-------------------455889999999999999
Q gi|254780268|r 221 HFGERDCSVQRR-----NQKIWE---E--------------AH-------------------SPVISAQDRTEIGETCVK 259 (443)
Q Consensus 221 ~l~erdCSiQrr-----~qkiiE---e--------------aP-------------------ap~l~~~~~~~i~~~A~~ 259 (443)
-|-+.+. +|+ +...|. + -| +-..++++.-.+.+.|.+
T Consensus 412 eLIe~qn--rrr~~~~g~esrI~lD~~t~~~L~~qG~tldSVp~~Ge~V~LR~nANLSTGGtaiDVTD~VHPe~~~~A~~ 489 (547)
T TIGR03103 412 DLIEKQS--RRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAER 489 (547)
T ss_pred HHHHHHC--CCCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHH
T ss_conf 9984305--77556789975334699999999984998122588899999942660268985161456769899999999
Q ss_pred HHHHHCCCCCCEEEEEEC---CCCEEEEECCCCC
Q ss_conf 886515434102458972---8834998227654
Q gi|254780268|r 260 AMKKIDYRGAGTIEFLYE---NGQFYFIEMNTRL 290 (443)
Q Consensus 260 ~~~~~g~~g~~tvEFl~~---~~~~yflEvN~Rl 290 (443)
+++++|.. ++-|+|++. .-++.|+|+|.|-
T Consensus 490 AAraIGLd-IaGIDliv~DIs~P~~vIIEvNa~P 522 (547)
T TIGR03103 490 AARALDIP-VVGIDFLVPDVTGPDYVIIEANERP 522 (547)
T ss_pred HHHHHCCC-EEEEEEEECCCCCCCEEEEEECCCC
T ss_conf 99973998-5568998426899981899977896
No 65
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process.
Probab=99.71 E-value=1.5e-17 Score=144.93 Aligned_cols=156 Identities=26% Similarity=0.444 Sum_probs=116.5
Q ss_pred CEEEECCCCCCCCHHCCHHHHHHHHHHCCCC--------EEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHH
Q ss_conf 5799918998530006989999999870998--------99458531310976668898459216268989998721899
Q gi|254780268|r 46 DESVCIGPPSSKDSYLNIQQIVAACEVTGAD--------AIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKI 117 (443)
Q Consensus 46 De~~~i~~~~~~~sYldi~~ii~~a~~~~~d--------aihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~ 117 (443)
++..+|||. -..|++.|.+.++= .|-=|||-- .+..+. -++= -+|.=+.+++.||.
T Consensus 157 ~~~~~LGPS--------T~~Iv~eA~~R~IP~~rL~~g~~vqlGYG~~------qkri~a-t~td-~Ts~iav~iA~DK~ 220 (876)
T TIGR02068 157 VADASLGPS--------TAAIVKEAEKRGIPYMRLSAGSLVQLGYGSK------QKRIQA-TETD-RTSAIAVEIACDKD 220 (876)
T ss_pred HHHCCCCCC--------HHHHHHHHHHCCCCEEEECCCCEEECCCCCC------CEEEEE-ECCC-CCCEEEHHHHCCHH
T ss_conf 973367987--------7899999973789868733764456057754------303432-0025-76501012223637
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC-CHHHHHCCCCCCCCEEEE-EEECHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 887766422443324333455799987320033-012200023457821688-875066899999875432125899816
Q gi|254780268|r 118 TAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIG-FPVLVKASAGGGGRGMRI-AYSENDLSEAIDQARSEALAAFGNDAV 195 (443)
Q Consensus 118 ~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iG-yPviiKp~~gGGG~Gi~v-v~~~~el~~a~~~a~~ea~~~fgd~~v 195 (443)
.+|++++.+|||||.|....+.+++.++++.+| |||+|||.+|.-|||+.+ ..+.+|.++||+.|.++|+. +.|
T Consensus 221 lTK~iL~~~GvPVP~G~~~~~~~~a~~aa~~~GG~PvViKP~DGn~GrGv~~ni~~r~e~e~AY~~A~~~Sk~----~~V 296 (876)
T TIGR02068 221 LTKKILKAAGVPVPEGTVVQSAEEAWEAAEDLGGYPVVIKPYDGNHGRGVTINIETRDEIESAYEAAKEESKT----SEV 296 (876)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHCCCC----CEE
T ss_conf 8999998478988887366778999999997189968995177998743784077748899999999860786----606
Q ss_pred EEEEEEEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf 884434201103315777347870236566
Q gi|254780268|r 196 YIEKYLENPRHIEVQIFGDGMGNAIHFGER 225 (443)
Q Consensus 196 lvEk~i~~~rhiEvqVl~D~~g~~v~l~er 225 (443)
+||||+.| +|.-+-|+++ ..|+..+|
T Consensus 297 iVEr~i~G-~dhRlLVVg~---k~VAvA~R 322 (876)
T TIGR02068 297 IVERYIKG-RDHRLLVVGG---KLVAVAER 322 (876)
T ss_pred EEEEEECC-CCEEEEEECC---EEEEEECC
T ss_conf 89876427-6238999989---68998618
No 66
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.44 E-value=2.2e-12 Score=108.35 Aligned_cols=213 Identities=20% Similarity=0.298 Sum_probs=135.9
Q ss_pred CCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEE--C--CC---HHHHHHHHCHHHHHHHHHHCCCCCCCC
Q ss_conf 6989999999870998994585313109766688984592162--6--89---899987218998877664224433243
Q gi|254780268|r 61 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFI--G--PS---SEHIKIMGDKITAKKTAQQLGIPVVPG 133 (443)
Q Consensus 61 ldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fI--G--Ps---~~ai~~~gDK~~~k~~a~~~GVP~~p~ 133 (443)
|.-..|+.-|.+.|+.-= -|.++..|-+.-....+.++ | +| .-+.-.|++|..+|+++.++|+|||.|
T Consensus 433 lstq~l~~~ai~~Gi~~~-----vld~~~~fl~l~~~~~~eyvk~~~~Ts~d~y~~~limenk~vtK~vl~~~g~~vp~g 507 (753)
T PRK02471 433 LSTQILLFDAIQRGIQVE-----ILDRQDQFLKLQKGDHVEYVKNGNMTSKDNYISPLIMENKVVTKKILAEAGFPVPAG 507 (753)
T ss_pred HHHHHHHHHHHHCCCEEE-----EECCHHCEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 778999999997697568-----834155765442298878863076366521576898841199999999859989998
Q ss_pred CCCCCHHHHHHHHHCC-CCHHHHHCCCCCCCCEEEEE---EECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCE
Q ss_conf 3345579998732003-30122000234578216888---7506689999987543212589981688443420110331
Q gi|254780268|r 134 SGEVYPHTAMPIAKEI-GFPVLVKASAGGGGRGMRIA---YSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEV 209 (443)
Q Consensus 134 ~~~~~~~ea~~~a~~i-GyPviiKp~~gGGG~Gi~vv---~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEv 209 (443)
....+.+++.+.-..+ |-|++|||..+..|.|+.+. .+.+++.+|++.|+++ |..|+||+|++| ++.-+
T Consensus 508 ~~~~~~~~a~~~~~~~~~k~ivvKpkstn~g~gi~if~~~~~~~~~~~A~~~af~~------d~~VlVE~~i~G-~dyR~ 580 (753)
T PRK02471 508 DEFTSLEEALADYSLFEDKAIVVKPKSTNFGLGISIFKEVASLEDYQKALEIAFKE------DSSVLVEEFIVG-TEYRF 580 (753)
T ss_pred CEECCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHC------CCEEEEEEEECC-CCEEE
T ss_conf 74078999999999867996686807777877659834899989999999999856------981899973168-70699
Q ss_pred EE----------------EEECCCCCCCCCCCCCCCCCC-------CCEE---EE-------------------------
Q ss_conf 57----------------773478702365665421135-------6225---54-------------------------
Q gi|254780268|r 210 QI----------------FGDGMGNAIHFGERDCSVQRR-------NQKI---WE------------------------- 238 (443)
Q Consensus 210 qV----------------l~D~~g~~v~l~erdCSiQrr-------~qki---iE------------------------- 238 (443)
-| +|||..++--|-+. +++ |.+- |.
T Consensus 581 lVI~~kvvAv~~R~Pa~VvGDG~~TI~eLI~~----kN~dp~Rg~~~~~pl~~I~ld~~~~~~L~~qg~tldsVp~~ge~ 656 (753)
T PRK02471 581 FVLDGKVEAVLLRVPANVVGDGIHTVRELVAQ----KNQDPLRGTDHRTPLEKIQLGEIEQLMLKQQGLTFDSIPKKGEI 656 (753)
T ss_pred EEECCEEEEEEECCCCEEEECCHHHHHHHHHH----HCCCCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCCCCE
T ss_conf 99999999999047973771867569999998----65885557887787722236989999999859994552888989
Q ss_pred -----EC------CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC---------CCCEEEEECCCCC
Q ss_conf -----03------4455889999999999999886515434102458972---------8834998227654
Q gi|254780268|r 239 -----EA------HSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE---------NGQFYFIEMNTRL 290 (443)
Q Consensus 239 -----ea------Pap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~---------~~~~yflEvN~Rl 290 (443)
.| -+...++++-....+.|+++++++|.. .+-|+++.+ .+++.++|+|.+=
T Consensus 657 V~Lr~naNlSTGG~siDvTD~ihp~~~~~A~~aa~a~gl~-i~GvDii~~di~~p~~~~~~~~~IIEvN~~P 727 (753)
T PRK02471 657 VYLRENSNISTGGDSIDMTDDMHDSYKQIAVKAAKALGAK-ICGVDLIIPDLTQPASPENPNYGIIELNFNP 727 (753)
T ss_pred EEEECCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCC-EEEEEEEECCCCCCCCCCCCCEEEEEECCCC
T ss_conf 9983476157898715046677989999999999860998-5689997157776664457964999966886
No 67
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.43 E-value=2.3e-12 Score=108.23 Aligned_cols=229 Identities=17% Similarity=0.214 Sum_probs=164.2
Q ss_pred CHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC--CCCH
Q ss_conf 98999999987099899458531310976668898459216268989998721899887766422443324333--4557
Q gi|254780268|r 62 NIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG--EVYP 139 (443)
Q Consensus 62 di~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~--~~~~ 139 (443)
.-+.+++..+..|.-.. .-||-=+-+--+.|.+.|+..+=|+++-=..+.+|+.+-++..++|||.+|... +.+-
T Consensus 78 qhpEv~~~ik~rg~~gk---~~fvmfdEeTe~La~~lGl~v~~P~a~LR~~ldsKi~t~Rlgn~AGvpsVPnvl~~v~sY 154 (480)
T PRK06524 78 RDPETLEFIKNRGPGGK---ACFVMFDEETQALARQAGLEVMHPPAELRHRLDSKIVMTRLADEAGVPSVPHVIGRVDSY 154 (480)
T ss_pred CCHHHHHHHHHCCCCCE---EEEEEECHHHHHHHHHHCCCEECCHHHHHHHHCCEEEEEEECCCCCCCCCCCEEECCCCH
T ss_conf 29899999984389875---899995637899999709727558299997743611467521115887676300035669
Q ss_pred HHHHHHHHC--CCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCC
Q ss_conf 999873200--330122000234578216888750668999998754321258998168844342011033157773478
Q gi|254780268|r 140 HTAMPIAKE--IGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMG 217 (443)
Q Consensus 140 ~ea~~~a~~--iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g 217 (443)
+++.+.+++ +|--++|...+|-+|+....+.++.|..+.-.... +.+++-|.|-|.. |..-+.-..-.+|
T Consensus 155 ~~L~~~~~~aglG~DLVvQt~~GdsG~tTFFi~~e~D~~k~a~eIv-------ge~eiKiMKRI~~-~~~aiEac~T~~G 226 (480)
T PRK06524 155 EELSALAHEAGLGDDLVVQTAYGDAGSTTFFVRGERDWDKYAGEIV-------GQPEIKVMKRIRN-VEVCIEACVTRHG 226 (480)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECHHHHHHHHHHHH-------CCCHHHHHHHHCC-CCCCEEEEECCCC
T ss_conf 9999998870888635884256788741699725656767577640-------6631534434247-6411112200387
Q ss_pred CCCCC------CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH---CCCCCCEEEEEEC--CCCEEEEEC
Q ss_conf 70236------566542113562255403445588999999999999988651---5434102458972--883499822
Q gi|254780268|r 218 NAIHF------GERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKI---DYRGAGTIEFLYE--NGQFYFIEM 286 (443)
Q Consensus 218 ~~v~l------~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~---g~~g~~tvEFl~~--~~~~yflEv 286 (443)
.++-- |-.|-+--|--=..=|+.|. .+++.++++.++.+.++...+ ||+|..-|+||+| .+++|+=|+
T Consensus 227 TivgP~MTelvGf~ELTPykGgWCGNei~~~-~~~p~~r~kare~~~k~Gd~L~~eGYrGyFevDfLiD~dt~evyLGEl 305 (480)
T PRK06524 227 TVIGPAMTSLVGYPELTPYRGAWCGNDIWRG-ALPPAQTRAAREMVAKLGDVLSREGYRGYFEVDLLHDLDADELYLGEV 305 (480)
T ss_pred EEECHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEECC
T ss_conf 3632467754284116766776435545502-289136699999999987998744566358999988557784754036
Q ss_pred CCCCCCCCHHHHHHHC
Q ss_conf 7654332016788632
Q gi|254780268|r 287 NTRLQVEHPVTEAITG 302 (443)
Q Consensus 287 N~Rlqveh~vte~~tg 302 (443)
|||++=-.|+|..+++
T Consensus 306 NPRisGAS~mTN~~a~ 321 (480)
T PRK06524 306 NPRLSGASPMTNLTTE 321 (480)
T ss_pred CCCCCCCCCCHHHHHH
T ss_conf 7644488864035667
No 68
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.43 E-value=1.5e-12 Score=109.49 Aligned_cols=185 Identities=23% Similarity=0.302 Sum_probs=129.0
Q ss_pred HHHHHHHHHHCCCCE---EECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 899999998709989---94585313109766688984592162689899987218998877664224433243334557
Q gi|254780268|r 63 IQQIVAACEVTGADA---IHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYP 139 (443)
Q Consensus 63 i~~ii~~a~~~~~da---ihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~ 139 (443)
...-++-+.+ ++|+ |-|--++|= ..+-+..|+. ..-+|+|++||+.++||..+.+.++.+ |++++-+.
T Consensus 63 ~~~~~ek~le-~~Da~LvIAPEdd~lL--y~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e---- 133 (307)
T COG1821 63 VLRDEEKALE-KADATLVIAPEDDGLL--YSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTRE---- 133 (307)
T ss_pred HHHHHHHHHH-CCCEEEEEECCCCCHH--HHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCC----
T ss_conf 8899999875-2884699804767718--9999999987-675089777876751089899988411-24888553----
Q ss_pred HHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCC
Q ss_conf 99987320033012200023457821688875066899999875432125899816884434201103315777347870
Q gi|254780268|r 140 HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNA 219 (443)
Q Consensus 140 ~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~ 219 (443)
. ...+=-.++||.+|.||.|+....+..++ .++.+||+| .|+.|. +.+|. .+
T Consensus 134 --~----~~~~~k~ViKp~dgCgge~i~~~~~~pd~-------------------~i~qEfIeG-~~lSVS-L~~GE-kv 185 (307)
T COG1821 134 --W----AEEPKKYVIKPADGCGGEGILFGRDFPDI-------------------EIAQEFIEG-EHLSVS-LSVGE-KV 185 (307)
T ss_pred --C----CCCCCEEEECCCCCCCCCEEECCCCCCCH-------------------HHHHHHCCC-CCEEEE-EECCC-CC
T ss_conf --5----56785688622556775102046777521-------------------667874377-614899-85587-34
Q ss_pred CCCCCCCCCCCCCCC--EEEE----ECCCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf 236566542113562--2554----034455889999999999999886515-43410245897288349982276543
Q gi|254780268|r 220 IHFGERDCSVQRRNQ--KIWE----EAHSPVISAQDRTEIGETCVKAMKKID-YRGAGTIEFLYENGQFYFIEMNTRLQ 291 (443)
Q Consensus 220 v~l~erdCSiQrr~q--kiiE----eaPap~l~~~~~~~i~~~A~~~~~~~g-~~g~~tvEFl~~~~~~yflEvN~Rlq 291 (443)
.+| |+.|.+- .+-| -.++| ++.++++++.+.|.+..+.++ +.|.--|+.++. +++|++|+|||+-
T Consensus 186 ~pL-----svNrQfi~~~~~~~~y~gg~~p-i~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls-D~pYvIEINpR~T 257 (307)
T COG1821 186 LPL-----SVNRQFIIFAGSELVYNGGRTP-IDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS-DEPYVIEINPRPT 257 (307)
T ss_pred CCC-----EECHHHHHHCCCEEEECCCCCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC-CCCEEEEECCCCC
T ss_conf 430-----2322321001423443367678-8817889999999999974025554266789964-9857999468777
No 69
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.34 E-value=9.7e-11 Score=96.65 Aligned_cols=271 Identities=18% Similarity=0.263 Sum_probs=171.6
Q ss_pred HHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCE---EECCCC---HHHCC-H
Q ss_conf 9998888096599985855771877675857999189985300069899999998709989---945853---13109-7
Q gi|254780268|r 17 ILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADA---IHPGYG---FLSEN-A 89 (443)
Q Consensus 17 iira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~da---ihPGyG---fLsEn-~ 89 (443)
..|+..++.+.+.++ |.+-....+-+.+.+...-.+ +..+.. +..+.+.|.+++-.+ |-.|=| |.|-. .
T Consensus 18 lARSfg~~~vpv~~l-s~d~plPt~Sr~vr~t~~w~g-phd~ga--iafLrd~Aekhglkg~LLva~GDgev~lvSq~re 93 (415)
T COG3919 18 LARSFGEEFVPVLAL-SADGPLPTYSRIVRVTTHWNG-PHDEGA--IAFLRDFAEKHGLKGYLLVACGDGEVLLVSQYRE 93 (415)
T ss_pred HHHHHCCCCCEEEEE-ECCCCCCCHHHHHEEEECCCC-CCCCCH--HHHHHHHHHHCCCCCEEEEECCCCEEEEHHHHHH
T ss_conf 887614012517998-469888644443101000489-985209--9999998761476735999638830662575699
Q ss_pred HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCC--CCEE-
Q ss_conf 6668898459216268989998721899887766422443324333455799987320033012200023457--8216-
Q gi|254780268|r 90 KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGG--GRGM- 166 (443)
Q Consensus 90 ~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGG--G~Gi- 166 (443)
++...+ .+ +-|....++.+.+|-.+.+.+.+.|+|.+.-+...+. ....+.++-||+|+||-.||| ..+.
T Consensus 94 eLSa~f---~v--~lp~w~~l~wlceKPllY~ra~elgl~~P~Ty~v~S~--~d~~~~el~FPvILKP~mgg~~~~~ara 166 (415)
T COG3919 94 ELSAFF---EV--PLPDWALLRWLCEKPLLYNRAEELGLPYPKTYLVNSE--IDTLVDELTFPVILKPGMGGSVHFEARA 166 (415)
T ss_pred HHHHHH---CC--CCCCHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECCH--HHHHHHHEEEEEEECCCCCCCCEEEHHH
T ss_conf 998876---57--7873899999860828888899819997606772314--4321231440388617888751001010
Q ss_pred --EEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEE----EEECCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf --888750668999998754321258998168844342011033157----77347870236566542113562255403
Q gi|254780268|r 167 --RIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQI----FGDGMGNAIHFGERDCSVQRRNQKIWEEA 240 (443)
Q Consensus 167 --~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqV----l~D~~g~~v~l~erdCSiQrr~qkiiEea 240 (443)
..+.+.+|++.++..|..| .+.+.|+|.+||+|.- |-|- +-|. |.-| -+|+-.|-.|.
T Consensus 167 Ka~~a~d~ee~k~a~~~a~ee----igpDnvvvQe~IPGGg--E~qfsyaAlw~~-g~pv----aeftarr~rqy----- 230 (415)
T COG3919 167 KAFTAADNEEMKLALHRAYEE----IGPDNVVVQEFIPGGG--ENQFSYAALWDK-GHPV----AEFTARRLRQY----- 230 (415)
T ss_pred HEEECCCHHHHHHHHHHHHHH----CCCCCEEEEEECCCCC--CCCCHHHHHHHC-CCCH----HHHHCCHHHCC-----
T ss_conf 014316779999999998874----3997258877057998--223209889857-9834----64423422218-----
Q ss_pred CCCC--------CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHH
Q ss_conf 4455--------889999999999999886515434102458972--883499822765433201678863256201123
Q gi|254780268|r 241 HSPV--------ISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE--NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQI 310 (443)
Q Consensus 241 Pap~--------l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~--~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~ 310 (443)
|.+. +.+ .+++.++|.++.+.+++.|+..|||-+| ||.+-++|||||--+-..... ..|+||-+...
T Consensus 231 Pvdfgytst~vevvD--n~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw~wfgl~t-aaG~nLg~~Lw 307 (415)
T COG3919 231 PVDFGYTSTVVEVVD--NQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWRWFGLVT-AAGYNLGRYLW 307 (415)
T ss_pred CCCCCCCCEEEEECC--CHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEECCCCCCEEEEEE-CCCCCCCCEEE
T ss_conf 865464527999528--289999999999863125547899875687772467762588730454774-04545301478
Q ss_pred HHHHCCC
Q ss_conf 2221022
Q gi|254780268|r 311 YVASENR 317 (443)
Q Consensus 311 ~~a~g~~ 317 (443)
.++.+.+
T Consensus 308 a~~~~~~ 314 (415)
T COG3919 308 ADRINNE 314 (415)
T ss_pred EEECCCC
T ss_conf 6515896
No 70
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.17 E-value=4.3e-09 Score=84.93 Aligned_cols=256 Identities=21% Similarity=0.280 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCH-HHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHH
Q ss_conf 999999998888096599985855-7718776758579991899853000698999999987099899458531310976
Q gi|254780268|r 12 EIALRILRACKELGIPTVAVHSTA-DSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAK 90 (443)
Q Consensus 12 eia~riira~~elGi~tv~v~s~~-D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~ 90 (443)
--|+.|++-||+.|.+|+++.... +..-.....+||.+.+. +|-|+-.+-+--++.++--| | -|-+.+-..
T Consensus 27 HSALqIl~GAK~EGF~T~~vc~~gr~~~Y~~f~~~De~iv~d------~f~di~~~q~~L~~~NaI~I-P-hgSfv~Y~G 98 (356)
T PRK13278 27 HSSLQILKGAKKEGFRTIAICEKKREKFYKRFPFADEFIIVD------SFSDILEIQEELREMNAIVI-P-HGSFVAYLG 98 (356)
T ss_pred HHHHHHHCCHHHCCCCEEEEECCCCCCHHHHCCCCCEEEEEC------CHHHHHHHHHHHHHCCEEEE-C-CCCEEEEEC
T ss_conf 259888532877399579996699745345477642799947------68999999999987896996-4-888589836
Q ss_pred HHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEE
Q ss_conf 66889845921626898999872189988776642244332433345579998732003301220002345782168887
Q gi|254780268|r 91 FAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAY 170 (443)
Q Consensus 91 fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~ 170 (443)
-+.+|+..+++.| +-.-++-..|+..-+++++++|+|.|.-.. +++ +|.-|||||...--||||-.++.
T Consensus 99 -~~~iE~~~VP~FG-NR~lLrwEs~r~~~~~lLe~Agi~~Pk~~~--~Pe-------eIDr~VIVK~~gAkggrGyF~a~ 167 (356)
T PRK13278 99 -LENVEEFKVPMFG-NREILRWESDRDKERKLLEGAGIRIPRKYE--DPE-------DIDGPVIVKLPGAKGGRGYFIAS 167 (356)
T ss_pred -HHHHHHCCCCCCC-CHHHHHHHHCHHHHHHHHHHCCCCCCEECC--CHH-------HCCCCEEEEECCCCCCCEEEEEC
T ss_conf -8888508888205-877866510307899999867999871158--955-------57852699746777774589957
Q ss_pred ECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEE---C-------CEEEEE-ECC--CCC---CCCCCCCCCCCCC--
Q ss_conf 506689999987543212589981688443420110---3-------315777-347--870---2365665421135--
Q gi|254780268|r 171 SENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRH---I-------EVQIFG-DGM--GNA---IHFGERDCSVQRR-- 232 (443)
Q Consensus 171 ~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rh---i-------EvqVl~-D~~--g~~---v~l~erdCSiQrr-- 232 (443)
+++|+.+..+.......- -......||+|+-|++- . ++.++| |.. .|+ .-++-+ -|..
T Consensus 168 s~~ef~~k~~~l~~~g~i-~d~~~~~IeEyv~G~~~~~~yFySpl~~~lEllg~D~R~esniDg~~rlPa~---~qle~~ 243 (356)
T PRK13278 168 SPEEFWEKIDRLKEKGLI-EDVEKYIIQEYVVGVPYYIHYFYSPIKNRLELLGIDRRYESNIDGLVRIPAK---DQLEAG 243 (356)
T ss_pred CHHHHHHHHHHHHHCCCC-CCCCCCEEEEEECCCEEEHHHCCCCCCCCEEEEECCEEEEECCHHHCCCCHH---HHHHCC
T ss_conf 989999999998862754-5554427999834741231220352006613663100344052232048878---885368
Q ss_pred -CCEEEEE--CCCCCCCHHHHHHHHHHHHHHHHHH------CCCCCCEEEEEEC-CCCEEEEECCCCCC
Q ss_conf -6225540--3445588999999999999988651------5434102458972-88349982276543
Q gi|254780268|r 233 -NQKIWEE--AHSPVISAQDRTEIGETCVKAMKKI------DYRGAGTIEFLYE-NGQFYFIEMNTRLQ 291 (443)
Q Consensus 233 -~qkiiEe--aPap~l~~~~~~~i~~~A~~~~~~~------g~~g~~tvEFl~~-~~~~yflEvN~Rlq 291 (443)
++.-++. .|+ .+-+.+..++.+++.+..++. |.-|....|.+++ +-+|++-||.+|+.
T Consensus 244 ~~p~~vvvGn~p~-vlRESLL~~vf~~ge~fV~a~k~l~~PG~iGPFcLq~vvt~~le~vvFevS~RIv 311 (356)
T PRK13278 244 IDPTYVVTGNIPL-VLRESLLPQVFEYGERFVEASKELVGPGMIGPFCLESVITDDLEIVVFEISARIV 311 (356)
T ss_pred CCCCEEEECCCCC-EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECCCC
T ss_conf 9984699888532-4417657999999999999999746998634543668986986099999854313
No 71
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.10 E-value=3.3e-08 Score=78.63 Aligned_cols=256 Identities=18% Similarity=0.223 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCHHHCCCCH---HHCCEEEECCCCCCCCHHCCH--HHHHHHHHHCCCCEEECCCCHHH
Q ss_conf 9999999988880965999858557718776---758579991899853000698--99999998709989945853131
Q gi|254780268|r 12 EIALRILRACKELGIPTVAVHSTADSGAMHV---RLADESVCIGPPSSKDSYLNI--QQIVAACEVTGADAIHPGYGFLS 86 (443)
Q Consensus 12 eia~riira~~elGi~tv~v~s~~D~~a~~~---~~ADe~~~i~~~~~~~sYldi--~~ii~~a~~~~~daihPGyGfLs 86 (443)
--|+.|++-||+.|.+|++|.. ..+.-++. ..+||.+.+. +|-|+ +.+-+--++.++--|.-|. +.
T Consensus 23 HSALqIl~GAK~EGF~Tv~vc~-kgRe~~Y~~f~~~~De~iv~d------~f~di~~~~~q~~L~~~NaI~IPhgS--fv 93 (363)
T PRK13277 23 HSALDVLDGAKDEGFRTIAVCQ-RGRERTYREFKGIVDEVIVLD------KFKDILSEEIQEELREENAIFVPNRS--FA 93 (363)
T ss_pred HHHHHHHCCHHHCCCCEEEEEC-CCCCCHHHHCCCCCCEEEEEC------CHHHHHHHHHHHHHHHCCEEEECCCC--EE
T ss_conf 2598885448773994799957-987524775557784699955------57777548999999878979964888--46
Q ss_pred CCHHHHHHHHH-CCCEEECCCHHHHHHH--HCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCC-
Q ss_conf 09766688984-5921626898999872--1899887766422443324333455799987320033012200023457-
Q gi|254780268|r 87 ENAKFAEILED-HHIKFIGPSSEHIKIM--GDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGG- 162 (443)
Q Consensus 87 En~~fa~~~e~-~Gi~fIGPs~~ai~~~--gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGG- 162 (443)
+=.. .+.+|+ ..+++.|. -.-++-. .++-....+++++|+|.|.-.. +++ +|.-|||||...--|
T Consensus 94 ~Y~G-~d~iE~~~~VP~FGN-R~lLrwEer~~~~~~~~LLe~Agi~~Pk~~~--~Pe-------eIDr~VIVK~~gAkg~ 162 (363)
T PRK13277 94 VYVG-YDAIENEFPVPIFGN-RYLLRWEERTGEKNYYRLLEKAGIPRPRTFK--PPE-------EIDRPVIVKLPEAKRR 162 (363)
T ss_pred EEEC-HHHHHCCCCCCEECC-HHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC--CHH-------HCCCCEEEEECCCCCC
T ss_conf 7744-888850688871147-5663223451167899999867999870059--966-------6785269974567787
Q ss_pred -CCEEEEEEECHHHHHHHHHHHHHHHCC-CCCCCEEEEEEEEEEEE---C-------CEEEEE-ECC--CC---CCCCCC
Q ss_conf -821688875066899999875432125-89981688443420110---3-------315777-347--87---023656
Q gi|254780268|r 163 -GRGMRIAYSENDLSEAIDQARSEALAA-FGNDAVYIEKYLENPRH---I-------EVQIFG-DGM--GN---AIHFGE 224 (443)
Q Consensus 163 -G~Gi~vv~~~~el~~a~~~a~~ea~~~-fgd~~vlvEk~i~~~rh---i-------EvqVl~-D~~--g~---~v~l~e 224 (443)
|||-.++.+++|+.+..+.......-. -+-....||+|+-|++- . ++.++| |.. .| ..-++-
T Consensus 163 ~grGyF~a~s~~ef~~k~~~li~~G~I~~e~l~~~~IeEyv~G~~~~~~fFySpl~~~lEllgiD~R~esniDg~~rlpA 242 (363)
T PRK13277 163 LERGFFIAASYKDFYEKSERLIKQGVIDREDLEKARIEEYVIGAHFNFNYFYSPIRDRVELLGIDRRIQSNLDGFVRLPA 242 (363)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEECCCEEEEEECCCCCCCCEEEEECCCEEEECHHHHHCCCH
T ss_conf 76358996798999999999987587572214443789984376466521025323750366311102414144423986
Q ss_pred CCCCCCC---CCCEEEEE--CCCCCCCHHHHHHHHHHHHHHHHHH------CCCCCCEEEEEEC-CCCEEEEECCCCCC
Q ss_conf 6542113---56225540--3445588999999999999988651------5434102458972-88349982276543
Q gi|254780268|r 225 RDCSVQR---RNQKIWEE--AHSPVISAQDRTEIGETCVKAMKKI------DYRGAGTIEFLYE-NGQFYFIEMNTRLQ 291 (443)
Q Consensus 225 rdCSiQr---r~qkiiEe--aPap~l~~~~~~~i~~~A~~~~~~~------g~~g~~tvEFl~~-~~~~yflEvN~Rlq 291 (443)
+ .|. .++.-++. .|+ .+-+.+..++.+++.+..++. |.-|....|.+++ +.+|++-||.+|+.
T Consensus 243 ~---~Ql~~~~~p~~vvvGn~p~-vlRESLL~~vf~~ge~fV~ask~l~~pG~iGPFcLq~ivt~dle~vvFevS~RI~ 317 (363)
T PRK13277 243 P---QQLKLNEEPRYIEVGHEPA-TIRESLLEKVFDMGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVYDVAPRIG 317 (363)
T ss_pred H---HHHCCCCCCCEEEECCCCC-EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECCCC
T ss_conf 7---8841689984599888532-4317657999999999999999746998614433568985886099999844214
No 72
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=98.95 E-value=1.5e-07 Score=73.91 Aligned_cols=252 Identities=21% Similarity=0.285 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHCCCEEEEECCC-HHHCCCCHHHCCEEEECCCCCCCCHHCCH--HHHHHHHHHCCCC-------EEECCC
Q ss_conf 9999999888809659998585-57718776758579991899853000698--9999999870998-------994585
Q gi|254780268|r 13 IALRILRACKELGIPTVAVHST-ADSGAMHVRLADESVCIGPPSSKDSYLNI--QQIVAACEVTGAD-------AIHPGY 82 (443)
Q Consensus 13 ia~riira~~elGi~tv~v~s~-~D~~a~~~~~ADe~~~i~~~~~~~sYldi--~~ii~~a~~~~~d-------aihPGy 82 (443)
-|+.|.+.||+.|.+|++|... .+........||+.+.++ .|.|+ +.|.+--++.++- +.+-||
T Consensus 28 SaL~Il~GAK~EGF~Ti~v~~~gr~~~Y~~f~~a~e~i~v~------~f~dil~~~iqe~L~~~n~I~IP~gSfv~Y~G~ 101 (361)
T COG1759 28 SALQILDGAKEEGFRTIAVCQRGREKPYEKFPVADEVIIVD------KFSDILNEEIQEELRELNAIFIPHGSFVAYVGY 101 (361)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCHHHEEEEEC------HHHHHHHHHHHHHHHHCCEEEECCCCEEEEECC
T ss_conf 47888633776087279998357623676502023488952------047776489999998758499427864788531
Q ss_pred CHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCC
Q ss_conf 31310976668898459216268989998721899887766422443324333455799987320033012200023457
Q gi|254780268|r 83 GFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGG 162 (443)
Q Consensus 83 GfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGG 162 (443)
- ....+.-++..| +-+.++-..|+..-+.+++++|++.|.-+ .+++| |.-|||||.-..-|
T Consensus 102 d---------~ie~~~~vP~fG-nR~lLrwE~~~~~~~~lLekAgi~~P~~~--~~Pee-------Idr~ViVK~pgAkg 162 (361)
T COG1759 102 D---------GIENEFEVPMFG-NRELLRWEEDRKLEYKLLEKAGLRIPKKY--KSPEE-------IDRPVIVKLPGAKG 162 (361)
T ss_pred H---------HHHHCCCCCCCC-CHHHHHHHCCHHHHHHHHHHCCCCCCCCC--CCHHH-------CCCCEEEECCCCCC
T ss_conf 4---------464411466116-67675300033568999997499988566--99678-------68736985577667
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHC-CCCCCCEEEEEEEEEEE---EC-------CEEEEE-ECC--CCC---CCCCCC
Q ss_conf 82168887506689999987543212-58998168844342011---03-------315777-347--870---236566
Q gi|254780268|r 163 GRGMRIAYSENDLSEAIDQARSEALA-AFGNDAVYIEKYLENPR---HI-------EVQIFG-DGM--GNA---IHFGER 225 (443)
Q Consensus 163 G~Gi~vv~~~~el~~a~~~a~~ea~~-~fgd~~vlvEk~i~~~r---hi-------EvqVl~-D~~--g~~---v~l~er 225 (443)
|||-.++.+++|+.+..++......- .-+-...-||+||-|++ |. ++.++| |.. .|. +-++-+
T Consensus 163 gRGyFiA~s~eef~ek~erl~~~gvi~~Edlkna~IeEYv~G~~f~~~yFyS~i~~~lEl~g~D~R~Esn~Dg~~RlPa~ 242 (361)
T COG1759 163 GRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVGAPFYFHYFYSPIKDRLELLGIDRRYESNLDGLVRLPAK 242 (361)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHCEEEEEEECCCEEEEEEECCCCCCEEEEEEEHHEECCCHHHCCCCHH
T ss_conf 74379976989999999999872876534432135447750660134552023457045763002013162121157878
Q ss_pred CC-CCCCCCCEEEEE--CCCCCCCHHHHHHHHHHHHHHHHHH------CCCCCCEEEEEEC-CCCEEEEECCCCCC
Q ss_conf 54-211356225540--3445588999999999999988651------5434102458972-88349982276543
Q gi|254780268|r 226 DC-SVQRRNQKIWEE--AHSPVISAQDRTEIGETCVKAMKKI------DYRGAGTIEFLYE-NGQFYFIEMNTRLQ 291 (443)
Q Consensus 226 dC-SiQrr~qkiiEe--aPap~l~~~~~~~i~~~A~~~~~~~------g~~g~~tvEFl~~-~~~~yflEvN~Rlq 291 (443)
|- -+ ..+++.++. .|+ .+-+.+..++.+++.+..++. |.-|..+.|.+++ +=++|+-||.+|+-
T Consensus 243 ~ql~l-~~~ptyvv~Gn~p~-vlRESLL~~vfe~ger~V~a~kel~~PG~iGpFcLq~i~t~dl~~vVFevS~Ri~ 316 (361)
T COG1759 243 DQLEL-NLEPTYVVVGNIPV-VLRESLLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTDDLEFVVFEVSARIV 316 (361)
T ss_pred HHHHC-CCCCEEEEECCCCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEEECCCC
T ss_conf 99745-89952899878513-2477778999999999999998745998513200200146875189999753104
No 73
>pfam08442 ATP-grasp_2 ATP-grasp domain.
Probab=98.89 E-value=3.7e-09 Score=85.44 Aligned_cols=164 Identities=23% Similarity=0.301 Sum_probs=103.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH-HHHHCCCCCC--CC--EEEEEEECHHHHHHHHHHHHHHHC---
Q ss_conf 988776642244332433345579998732003301-2200023457--82--168887506689999987543212---
Q gi|254780268|r 117 ITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFP-VLVKASAGGG--GR--GMRIAYSENDLSEAIDQARSEALA--- 188 (443)
Q Consensus 117 ~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyP-viiKp~~gGG--G~--Gi~vv~~~~el~~a~~~a~~ea~~--- 188 (443)
..+|+++++.|||+|+|....+++++.++++++|+| +++||--..| |+ |++++++++|+.+..+........
T Consensus 5 yqaK~ll~~~gIpvp~g~~~~~~~ea~~~~~~l~~~~~VvKaQv~aGGRGKaGGVk~~~~~~ea~~~a~~~lg~~l~T~Q 84 (202)
T pfam08442 5 YQAKEILAKYGVPVPRGEVAFSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKAGGVKLAKSPEEAKEAAKEMLGKNLVTKQ 84 (202)
T ss_pred HHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHCCCEEEEEE
T ss_conf 89999999859989991596999999999998099869998742358887677389978999999999987297787550
Q ss_pred ----CCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCC-----CCCCCCCC---CCCC-EEE--EECCCCCCCHHHHHHH
Q ss_conf ----5899816884434201103315777347870236-----56654211---3562-255--4034455889999999
Q gi|254780268|r 189 ----AFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHF-----GERDCSVQ---RRNQ-KIW--EEAHSPVISAQDRTEI 253 (443)
Q Consensus 189 ----~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l-----~erdCSiQ---rr~q-kii--EeaPap~l~~~~~~~i 253 (443)
...=..++||+.++-.||+-+.++-|+..+.+.+ |.-| |+ ..++ |++ ..-|.-++++....+
T Consensus 85 Tg~~G~~V~~vlvee~~~i~~E~Ylsi~~DR~~~~~~ii~S~~GG~d--IEeVa~~~Pe~I~k~~id~~~gl~~~~~r~- 161 (202)
T pfam08442 85 TGPEGKPVNKVLVEEAVDIAREYYLSIVLDRASRGPVVIASSEGGVD--IEEVAAKNPEAIIKVPIDPAKGLTPYQARE- 161 (202)
T ss_pred CCCCCCEEEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEECCCCCC--HHHHHCCCHHHEEEEEECCCCCCCHHHHHH-
T ss_conf 27889623389998515401007999997577784478972678850--999730095572999718787989999999-
Q ss_pred HHHHHHHHHHHCCCCCCE---EEE------EECCCCEEEEECCCC
Q ss_conf 999999886515434102---458------972883499822765
Q gi|254780268|r 254 GETCVKAMKKIDYRGAGT---IEF------LYENGQFYFIEMNTR 289 (443)
Q Consensus 254 ~~~A~~~~~~~g~~g~~t---vEF------l~~~~~~yflEvN~R 289 (443)
++..+|..+-.. .++ ++.+...-++|+||=
T Consensus 162 ------~~~~lg~~~~~~~~~~~~i~~Ly~~f~~~Da~llEINPL 200 (202)
T pfam08442 162 ------IAFKLGLEGELVKQAADIIKKLYKLFVEYDATLVEINPL 200 (202)
T ss_pred ------HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf ------999849998999999999999999999669828975688
No 74
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.71 E-value=8.6e-08 Score=75.71 Aligned_cols=103 Identities=26% Similarity=0.391 Sum_probs=79.6
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHH-HHHCC-CCCC-C--CEEEEEEECHHHHHHHHHHHHHHH----
Q ss_conf 9887766422443324333455799987320033012-20002-3457-8--216888750668999998754321----
Q gi|254780268|r 117 ITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPV-LVKAS-AGGG-G--RGMRIAYSENDLSEAIDQARSEAL---- 187 (443)
Q Consensus 117 ~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPv-iiKp~-~gGG-G--~Gi~vv~~~~el~~a~~~a~~ea~---- 187 (443)
..+|+++++.|||+|+|....+++|+..+++++|+|. +||+- ..|| | =|+++|++++|+.+..+.......
T Consensus 6 yqaKell~~~gIpvp~g~v~~~~~ea~~~~~~l~~~~~VvKAQV~aGGRGKaGGVk~~~s~~ea~~~a~~ilg~~lvT~Q 85 (388)
T PRK00696 6 YQAKELLAEYGVPVPRGYVAFTPEEAVEAAEELGGPVWVVKAQVHAGGRGKAGGVKVAKSKEEVRAAAEEILGKDLVTHQ 85 (388)
T ss_pred HHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEEC
T ss_conf 99999999869989997377999999999998299958999805458888686079908999999999998567742101
Q ss_pred ---CCCCCCCEEEEEEEEEEEECCEEEEEECCCCC
Q ss_conf ---25899816884434201103315777347870
Q gi|254780268|r 188 ---AAFGNDAVYIEKYLENPRHIEVQIFGDGMGNA 219 (443)
Q Consensus 188 ---~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~ 219 (443)
....=..||||+.++-.||+=+.++-|+....
T Consensus 86 Tg~~G~~V~~vlvee~~~i~~E~Ylsi~~DR~~~~ 120 (388)
T PRK00696 86 TGPEGQPVNRLLIEEGADIAKELYLSAVVDRATRR 120 (388)
T ss_pred CCCCCCEEEEEEEEECCCHHHHEEEEEEEECCCCC
T ss_conf 58888444799987516612406899998647785
No 75
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=98.68 E-value=4.2e-08 Score=77.91 Aligned_cols=167 Identities=23% Similarity=0.306 Sum_probs=104.3
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC-CHHHHHCCCCCCCC----EEEEEEECHHHHHHHHHHHH----HHH
Q ss_conf 9887766422443324333455799987320033-01220002345782----16888750668999998754----321
Q gi|254780268|r 117 ITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIG-FPVLVKASAGGGGR----GMRIAYSENDLSEAIDQARS----EAL 187 (443)
Q Consensus 117 ~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iG-yPviiKp~~gGGG~----Gi~vv~~~~el~~a~~~a~~----ea~ 187 (443)
..+|+++.+.|||+++|....+++++.++++++| .|+++|+--.-||| |++++.+.+|..++.+.... ...
T Consensus 6 YqaKelf~~~GiPvp~g~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~ 85 (387)
T COG0045 6 YQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDI 85 (387)
T ss_pred HHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCC
T ss_conf 88998999729989995454089999999998189967999225305766667668838989999999998486654576
Q ss_pred CCCCCCCEEEEEEEEEE-EECCEEEEEECCCCCCCCC-CCCCC--CC---CCCC-EEE--EECCCCCCCHHHHHHHHHHH
Q ss_conf 25899816884434201-1033157773478702365-66542--11---3562-255--40344558899999999999
Q gi|254780268|r 188 AAFGNDAVYIEKYLENP-RHIEVQIFGDGMGNAIHFG-ERDCS--VQ---RRNQ-KIW--EEAHSPVISAQDRTEIGETC 257 (443)
Q Consensus 188 ~~fgd~~vlvEk~i~~~-rhiEvqVl~D~~g~~v~l~-erdCS--iQ---rr~q-kii--EeaPap~l~~~~~~~i~~~A 257 (443)
..-.=..+|||++++.. +|+=+.++-|+...+..+- -++-- |+ ..++ ||+ ...|.+++.+-+ +
T Consensus 86 ~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~~~~idp~~g~~~~~-------a 158 (387)
T COG0045 86 KGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPLTGLRPYQ-------A 158 (387)
T ss_pred CCCEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHEEEEEECCCCCCCHHH-------H
T ss_conf 884542899974677764337999999737783799996677951899500283452689747766878779-------9
Q ss_pred HHHHHHHCCCCCCE---EEE---EE---CCCCEEEEECCCCC
Q ss_conf 99886515434102---458---97---28834998227654
Q gi|254780268|r 258 VKAMKKIDYRGAGT---IEF---LY---ENGQFYFIEMNTRL 290 (443)
Q Consensus 258 ~~~~~~~g~~g~~t---vEF---l~---~~~~~yflEvN~Rl 290 (443)
..++..+|+.+--- .++ |+ -+-+.-++|+||=.
T Consensus 159 R~la~~lgl~~~~~~~~~~ii~~ly~~f~~~Da~lvEINPLv 200 (387)
T COG0045 159 RELAFKLGLEGELVKQVADIIKKLYKLFVEKDATLVEINPLV 200 (387)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCE
T ss_conf 999997499878999999999999999997587678752508
No 76
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809 There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC) is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC) is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits. This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=98.63 E-value=2e-07 Score=73.06 Aligned_cols=178 Identities=23% Similarity=0.286 Sum_probs=118.6
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC-CHHHHHCCCCCCCC----EEEEEEECHHHHHHHHHHHHHHHCCCC
Q ss_conf 9887766422443324333455799987320033-01220002345782----168887506689999987543212589
Q gi|254780268|r 117 ITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIG-FPVLVKASAGGGGR----GMRIAYSENDLSEAIDQARSEALAAFG 191 (443)
Q Consensus 117 ~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iG-yPviiKp~~gGGG~----Gi~vv~~~~el~~a~~~a~~ea~~~fg 191 (443)
..||+++++.|||+++|....+.+|+...++++| .+++||+==.-||| |+.++++.+|+.++-+..++.-..+|=
T Consensus 6 YqAK~if~~YGiPvp~g~v~~s~~e~~~~~~~~g~~~~VvKaQVhaGGRGKAGGv~~a~s~ee~~~~a~~llg~~l~t~Q 85 (389)
T TIGR01016 6 YQAKEIFAKYGIPVPEGEVATSVEEVEEIAEELGEGKVVVKAQVHAGGRGKAGGVKVAKSKEEALKAAEKLLGKELKTFQ 85 (389)
T ss_pred HHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCEEEEEE
T ss_conf 55899998478967886004167899999997079978999877326711215768970879999999987089157864
Q ss_pred C-------CCEEEEEEEEEEEECCEEEEEECCCCCCCC-----CCCCC-CCCCCCC-EEEEEC--CCC------------
Q ss_conf 9-------816884434201103315777347870236-----56654-2113562-255403--445------------
Q gi|254780268|r 192 N-------DAVYIEKYLENPRHIEVQIFGDGMGNAIHF-----GERDC-SVQRRNQ-KIWEEA--HSP------------ 243 (443)
Q Consensus 192 d-------~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l-----~erdC-SiQrr~q-kiiEea--Pap------------ 243 (443)
. .+||||+.++=.||+=+.++=|+.-.++.+ |.=|= -|=.+++ ||+-.+ |..
T Consensus 86 t~~~g~~VnkiliE~~~~I~kEyY~s~v~DR~~~~pv~maS~eGGvdIEEvA~~~Pe~I~k~~idp~~~~~pYq~R~~a~ 165 (389)
T TIGR01016 86 TDPLGQPVNKILIEEKIDIDKEYYLSIVIDRSAKKPVIMASTEGGVDIEEVAEKSPEKIIKVAIDPLTGLLPYQARELAK 165 (389)
T ss_pred CCCCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf 07888634478732677412001477999804787179970677841789952195716888717777778789999999
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCC-CCHHHHHHHHHC
Q ss_conf --588999999999999988651543410245897288349982276543320167886325-620112322210
Q gi|254780268|r 244 --VISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGI-DLVHEQIYVASE 315 (443)
Q Consensus 244 --~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgv-dlv~~~~~~a~g 315 (443)
.|+.++.+++.+...++++-. -+.+.-++|+||=+ +|.- +|+-+=.++...
T Consensus 166 ~~~l~~~~~~~~~~i~~~Ly~~F------------~e~Da~L~EINPLV---------iT~~G~L~alDAKl~~D 219 (389)
T TIGR01016 166 KLGLEGELIKQVASIIKKLYQIF------------LEKDASLVEINPLV---------ITKDGNLVALDAKLTID 219 (389)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHH------------HHCCCCEEEECCEE---------ECCCCCEEEEEEECCCC
T ss_conf 70897057788999999999988------------75371025452636---------87898889983322446
No 77
>PRK05246 glutathione synthetase; Provisional
Probab=98.30 E-value=1.9e-05 Score=59.01 Aligned_cols=265 Identities=15% Similarity=0.228 Sum_probs=136.8
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCHHHCCCC-HHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC------
Q ss_conf 0999999998888096599985855771877-675857999189985300069899999998709989945853------
Q gi|254780268|r 11 GEIALRILRACKELGIPTVAVHSTADSGAMH-VRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG------ 83 (443)
Q Consensus 11 Geia~riira~~elGi~tv~v~s~~D~~a~~-~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG------ 83 (443)
.---++++.+|++.|++..... ..| .+.. -..--.+..+........|.....- +...-...|+|+.=..
T Consensus 18 kDTT~~Lm~eAq~rGhev~~~~-p~d-L~~~~~~v~a~~~~v~~~~~~~~~~~~~~~-~~~~L~~fD~V~mRkDPPfD~~ 94 (316)
T PRK05246 18 KDSTFAMMLEAQRRGHELFYYE-PDD-LSLRGGEVRARARPLTVRDDKGDWYELGEE-QRLPLADFDVILMRKDPPFDME 94 (316)
T ss_pred CCHHHHHHHHHHHCCCEEEEEE-CCC-EEEECCEEEEEEEEEEECCCCCCCEEECCC-EECCHHHCCEEEECCCCCCCHH
T ss_conf 8729999999998799899997-275-699899999999999981588874794151-5513001989999269999768
Q ss_pred HHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCC
Q ss_conf 13109766688984592162689899987218998877664224433243334557999873200330122000234578
Q gi|254780268|r 84 FLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGG 163 (443)
Q Consensus 84 fLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG 163 (443)
++. +..+-+.++..|+.+| -+|.+|+.+.+|..+-++.+- +||-....+.++..+|.++.| .+++||.+|-||
T Consensus 95 Yi~-~T~lLe~~~~~gv~Vi-N~P~~IR~~nEKL~~l~F~~~----iP~TlVt~~~~~i~~F~~~~~-~iVlKPL~g~gG 167 (316)
T PRK05246 95 YIY-ATYLLERAERAGTLVV-NKPQSLRDANEKLFTLWFPEL----MPPTLVTRDKAEIRAFRAEHG-DIILKPLDGMGG 167 (316)
T ss_pred HHH-HHHHHHHHCCCCEEEE-CCHHHHHHHHHHHHHHHHHHH----CCCEEEECCHHHHHHHHHHHC-CEEEEECCCCCC
T ss_conf 889-9999985153870897-698998642647888740644----899357378999999999738-789997568898
Q ss_pred CEEEEEEE-CHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC--EEEEEECCCCCCCCCCCCCCCCCCCCEE----
Q ss_conf 21688875-0668999998754321258998168844342011033--1577734787023656654211356225----
Q gi|254780268|r 164 RGMRIAYS-ENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE--VQIFGDGMGNAIHFGERDCSVQRRNQKI---- 236 (443)
Q Consensus 164 ~Gi~vv~~-~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE--vqVl~D~~g~~v~l~erdCSiQrr~qki---- 236 (443)
.|+..+.. ...+...++...+. +..++++.+||+..+.=. |-++ | |..+. -++.|..|+-
T Consensus 168 ~gV~~i~~~d~n~~~i~e~~t~~-----~~~~v~vQ~yl~ei~~GDkRiilv-~--G~~ig-----~a~~R~p~~gdfR~ 234 (316)
T PRK05246 168 AGIFRVKADDPNLGVILETLTEQ-----GRRPVMAQRYLPEIKEGDKRILLV-D--GEPVG-----YALARIPAGGETRG 234 (316)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-----CCEEEEEEEEHHHCCCCCEEEEEE-C--CEEEH-----HEEEECCCCCCCEE
T ss_conf 40899777862389999999745-----873689886512436898799999-9--99911-----46883267886113
Q ss_pred -EE---ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--EEEEEECCCCEEEEECCCCCCCCCH----HHHHHHCCCCH
Q ss_conf -54---03445588999999999999988651543410--2458972883499822765433201----67886325620
Q gi|254780268|r 237 -WE---EAHSPVISAQDRTEIGETCVKAMKKIDYRGAG--TIEFLYENGQFYFIEMNTRLQVEHP----VTEAITGIDLV 306 (443)
Q Consensus 237 -iE---eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~--tvEFl~~~~~~yflEvN~Rlqveh~----vte~~tgvdlv 306 (443)
+. .+-+..|++..++- +.+++..|.-.|+. -++.+ | -|++|||- +.| =-+..||+|+.
T Consensus 235 Nl~~Gg~~~~~~lt~~~~~i----~~~i~p~L~~~gl~f~GiDvi---g-~~ltEINV----TSPtgl~ei~~~~~~~~~ 302 (316)
T PRK05246 235 NLAAGGRGEATPLTERDREI----CAAIGPELKERGLIFVGIDVI---G-DYLTEINV----TSPTGIREIERLTGVDIA 302 (316)
T ss_pred EEECCCEEEEECCCHHHHHH----HHHHHHHHHHCCCEEEEEEEE---C-CEEEEEEC----CCCHHHHHHHHHHCCCHH
T ss_conf 23059802671699899999----999999999879889999753---7-82689936----895459999987599989
Q ss_pred HHHH
Q ss_conf 1123
Q gi|254780268|r 307 HEQI 310 (443)
Q Consensus 307 ~~~~ 310 (443)
..-+
T Consensus 303 ~~~~ 306 (316)
T PRK05246 303 GMLW 306 (316)
T ss_pred HHHH
T ss_conf 9999
No 78
>pfam02955 GSH-S_ATP Prokaryotic glutathione synthetase, ATP-grasp domain.
Probab=98.27 E-value=1.8e-05 Score=59.23 Aligned_cols=141 Identities=18% Similarity=0.260 Sum_probs=78.4
Q ss_pred CCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECH-HHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEE--EC
Q ss_conf 2433345579998732003301220002345782168887506-68999998754321258998168844342011--03
Q gi|254780268|r 131 VPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSEN-DLSEAIDQARSEALAAFGNDAVYIEKYLENPR--HI 207 (443)
Q Consensus 131 ~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~-el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~r--hi 207 (443)
|+-....+.+++.++.++.| .+++||.+|.+|+|+..+.+.+ .+...++.... .+...+++.+||+... .+
T Consensus 13 P~T~vt~~~~~i~~f~~~~g-~vVvKPl~Gs~G~GV~~i~~~~~~~~~i~e~~~~-----~~~~~ii~QeyI~~~~~gD~ 86 (176)
T pfam02955 13 PPTLVTRDKEEIRAFLEEHG-DIILKPLDGMGGAGVFRIKKDDPNLNVILETLTQ-----YGRRPVMAQRYLPEIKEGDK 86 (176)
T ss_pred CCEEEECCHHHHHHHHHHCC-CEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHH-----CCCCCEEEEECCCCCCCCCE
T ss_conf 69479889999999999779-8999957888876759954783558999999984-----68883986431376789976
Q ss_pred CEEEEEECCCCCCCCCCC---CCCCCC-CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEE
Q ss_conf 315777347870236566---542113-5622554034455889999999999999886515434102458972883499
Q gi|254780268|r 208 EVQIFGDGMGNAIHFGER---DCSVQR-RNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYF 283 (443)
Q Consensus 208 EvqVl~D~~g~~v~l~er---dCSiQr-r~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yf 283 (443)
-|-|++ |.++.-..| +-++-. -+|--. -.+. .|+++++ ++...+.+..++.|.. .+-|+++ ..|+
T Consensus 87 Rv~vi~---g~~v~a~~R~~~~g~~r~Nl~~Gg~-~~~~-~lt~~~~-~ia~~~a~~l~~~Gl~-faGVDii----g~~l 155 (176)
T pfam02955 87 RILLVN---GEPIGALARIPAEGEFRGNLAAGGR-GEAT-ELTERDR-EICETIGPKLKERGLF-FVGLDVI----GDYL 155 (176)
T ss_pred EEEEEC---CEEEEEEEEECCCCCCEEEECCCCE-EECC-CCCHHHH-HHHHHHHHHHHHCCCE-EEEEEEE----CCEE
T ss_conf 999999---9998999985479852144026980-0057-8999999-9999999999986997-9999984----7908
Q ss_pred EECCC
Q ss_conf 82276
Q gi|254780268|r 284 IEMNT 288 (443)
Q Consensus 284 lEvN~ 288 (443)
+|||.
T Consensus 156 ~EVNv 160 (176)
T pfam02955 156 TEINV 160 (176)
T ss_pred EEEEC
T ss_conf 89958
No 79
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase homolog; InterPro: IPR011758 Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (IPR004666 from INTERPRO), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown..
Probab=98.24 E-value=3.8e-05 Score=56.94 Aligned_cols=193 Identities=19% Similarity=0.301 Sum_probs=106.6
Q ss_pred HCHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHCC-CCH-HHHHCCCCCCCCEEEEEE---------------ECHHH
Q ss_conf 18998877664224433243334557-9998732003-301-220002345782168887---------------50668
Q gi|254780268|r 114 GDKITAKKTAQQLGIPVVPGSGEVYP-HTAMPIAKEI-GFP-VLVKASAGGGGRGMRIAY---------------SENDL 175 (443)
Q Consensus 114 gDK~~~k~~a~~~GVP~~p~~~~~~~-~ea~~~a~~i-GyP-viiKp~~gGGG~Gi~vv~---------------~~~el 175 (443)
-||.++|.+|.++|+.||.-+.+++. .|...+-+=+ ++| -+|||+.|.||.|+-|+. +.+|+
T Consensus 36 DDKl~TK~~A~AaGi~VPelyGVI~~q~ev~~~~~ivkdh~dFVIKPAqGsGG~GIlVit~r~~~ryr~~sG~~i~~eei 115 (320)
T TIGR02291 36 DDKLKTKILAIAAGIAVPELYGVIEIQKEVKSLDDIVKDHEDFVIKPAQGSGGDGILVITDRLDERYRKSSGALISKEEI 115 (320)
T ss_pred CCHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCEECCCCCCCCHHHH
T ss_conf 31367889987336711013010023466543466627889836726606798727997036688403541010154567
Q ss_pred HHHHHHHHH--HHHCCCCCCCEEEEEEEEEEE-----------ECCEEEE---------------EECCCCCCC------
Q ss_conf 999998754--321258998168844342011-----------0331577---------------734787023------
Q gi|254780268|r 176 SEAIDQARS--EALAAFGNDAVYIEKYLENPR-----------HIEVQIF---------------GDGMGNAIH------ 221 (443)
Q Consensus 176 ~~a~~~a~~--ea~~~fgd~~vlvEk~i~~~r-----------hiEvqVl---------------~D~~g~~v~------ 221 (443)
+..+-.+.. +|+.- .+++-+||-.|..-- -|-+=|+ .||.-| +|
T Consensus 116 E~hvSniL~GLySLGG-~~D~AliEyrvkfDp~F~~~SYeGVPDiRiIVf~GyPVmaM~RlpTr~SdGKAN-LHQGAvGv 193 (320)
T TIGR02291 116 ERHVSNILAGLYSLGG-KRDRALIEYRVKFDPLFESVSYEGVPDIRIIVFKGYPVMAMLRLPTRASDGKAN-LHQGAVGV 193 (320)
T ss_pred HHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCC-CCCCCEEE
T ss_conf 7888888877765079-977368853201053447711134587268964186102100276567888302-12460242
Q ss_pred ---CC-CCC-CCCCCCCCEEEEECCCCCCC-----HHHHHHHHHHHHHHHHHHC--CCCCCEEEEEEC-CCCEEEEECCC
Q ss_conf ---65-665-42113562255403445588-----9999999999999886515--434102458972-88349982276
Q gi|254780268|r 222 ---FG-ERD-CSVQRRNQKIWEEAHSPVIS-----AQDRTEIGETCVKAMKKID--YRGAGTIEFLYE-NGQFYFIEMNT 288 (443)
Q Consensus 222 ---l~-erd-CSiQrr~qkiiEeaPap~l~-----~~~~~~i~~~A~~~~~~~g--~~g~~tvEFl~~-~~~~yflEvN~ 288 (443)
|. .|- -.+|-++ .|+-=|-.+-+ =--=+++-+.|....+-+| |.| |+..+| +..+-+||.|.
T Consensus 194 GiDlaTG~t~~a~w~n~--pi~~HPDTg~~~sglq~PhW~~ll~LAa~c~el~GLGY~G---vD~VLDke~GPlvLELNA 268 (320)
T TIGR02291 194 GIDLATGKTLRAVWLNQ--PIEKHPDTGKDVSGLQVPHWEKLLKLAAECYELVGLGYLG---VDMVLDKEKGPLVLELNA 268 (320)
T ss_pred EEECCCCCEEEEEECCC--CCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCCC---EEEEEECCCCCEEEEECC
T ss_conf 02311450321242067--6145838887535101667778999998775430676002---106874579881786447
Q ss_pred CCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 543320167886325620112322210222221133332012453302
Q gi|254780268|r 289 RLQVEHPVTEAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRI 336 (443)
Q Consensus 289 Rlqveh~vte~~tgvdlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri 336 (443)
|= | +.|+||.+.=|. +|--.+|+|+
T Consensus 269 RP-----------G-----L~IQIAN~~Gl~-------~Rl~~~~a~L 293 (320)
T TIGR02291 269 RP-----------G-----LAIQIANDAGLL-------PRLKEVEAKL 293 (320)
T ss_pred CC-----------C-----CHHHHHCCCCCC-------HHHHHHHHHC
T ss_conf 88-----------7-----212231314533-------6789999640
No 80
>pfam05770 Ins134_P3_kin Inositol 1, 3, 4-trisphosphate 5/6-kinase. This family consists of several inositol 1, 3, 4-trisphosphate 5/6-kinase proteins. Inositol 1,3,4-trisphosphate is at a branch point in inositol phosphate metabolism. It is dephosphorylated by specific phosphatases to either inositol 3,4-bisphosphate or inositol 1,3-bisphosphate. Alternatively, it is phosphorylated to inositol 1,3,4,6-tetrakisphosphate or inositol 1,3,4,5-tetrakisphosphate by inositol trisphosphate 5/6-kinase.
Probab=97.43 E-value=0.0044 Score=42.29 Aligned_cols=173 Identities=10% Similarity=0.236 Sum_probs=100.9
Q ss_pred CCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCC-------CCCCCC-CHHHHHHH--HHCCCCHHHHHCCCCCC---CC
Q ss_conf 5921626898999872189988776642244332-------433345-57999873--20033012200023457---82
Q gi|254780268|r 98 HHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVV-------PGSGEV-YPHTAMPI--AKEIGFPVLVKASAGGG---GR 164 (443)
Q Consensus 98 ~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~-------p~~~~~-~~~ea~~~--a~~iGyPviiKp~~gGG---G~ 164 (443)
-+++.|- ++++|+.+-||..+-+++.++.+... +..... +.++..+. .+.+.||++.||.-.-| +.
T Consensus 77 P~v~viD-P~~ai~~L~dR~~m~~~v~~l~~~~~~~~v~~P~~v~i~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH 155 (307)
T pfam05770 77 PEVPVLD-PPPAIRRLHNRQSMLQVVADLNLSMEDGRFGVPPQVVVMKDASSLSRAGAKAGLTFPLIAKPLVADGTAKSH 155 (307)
T ss_pred CCCEEEC-CHHHHHHHHCHHHHHHHHHHHCCCCCCCEEECCCEEEECCCHHHHHHHHHHCCCCCCEEECCHHCCCCCCCC
T ss_conf 9978977-999999987899999999981065679838369779972867788999997598676562330025785653
Q ss_pred EEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE-EECCEEEEEECCCCCCC------CCCCCCCCC----CCC
Q ss_conf 1688875066899999875432125899816884434201-10331577734787023------656654211----356
Q gi|254780268|r 165 GMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENP-RHIEVQIFGDGMGNAIH------FGERDCSVQ----RRN 233 (443)
Q Consensus 165 Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~-rhiEvqVl~D~~g~~v~------l~erdCSiQ----rr~ 233 (443)
-|.+|.+++.|.+. +.++++.+||.+. .=.-|-|+||..- ++. +.+.+++-. +-|
T Consensus 156 ~Malvf~~~gL~~L-------------~pP~VlQefvNH~gvlfKvyVvGd~~~-vv~R~Slpn~~~~~~~~~~~~~~f~ 221 (307)
T pfam05770 156 EMSLVYDQEGLNKL-------------QPPLVLQEFVNHGGVLFKVYVVGEHVT-VVKRRSLPDVSAGTLDRSSGSFRFS 221 (307)
T ss_pred EEEEEECHHHHHCC-------------CCCEEEEEEECCCCEEEEEEEECCEEE-EEECCCCCCCCCCCCCCCCCCEECC
T ss_conf 47899777576227-------------997588987547867999999643789-9964677787733234656413310
Q ss_pred C--EE------EE--ECC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--C-CCEEEEECCC
Q ss_conf 2--25------54--034-455889999999999999886515434102458972--8-8349982276
Q gi|254780268|r 234 Q--KI------WE--EAH-SPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE--N-GQFYFIEMNT 288 (443)
Q Consensus 234 q--ki------iE--eaP-ap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~--~-~~~yflEvN~ 288 (443)
| |. -+ ..+ ...+++ ..-+.+.|..+-+++|. .+..++.+.+ . +++|++.+|-
T Consensus 222 ~vS~~~~~~~~~~~~~~~~~~~~p~--~~~~~~la~~LR~~lgL-~LFgfDvI~~~~t~~r~~VIDINy 287 (307)
T pfam05770 222 QVSNLTASADDAELDKILEIAEMPP--DPFLEDLARALRRALGL-RLFNFDIIRDAGTADRYLVIDINY 287 (307)
T ss_pred CCCCCCCCCCHHHCCCCCCCCCCCC--HHHHHHHHHHHHHHCCC-EEECEEEEEECCCCCEEEEEEECC
T ss_conf 0467778862232135652023999--89999999999998099-496648999889898589999067
No 81
>PRK12458 glutathione synthetase; Provisional
Probab=97.43 E-value=0.00094 Score=47.02 Aligned_cols=195 Identities=13% Similarity=0.218 Sum_probs=109.8
Q ss_pred HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC-HHHHHCCCCCCCCEEEEEEE
Q ss_conf 88984592162689899987218998877664224433243334557999873200330-12200023457821688875
Q gi|254780268|r 93 EILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF-PVLVKASAGGGGRGMRIAYS 171 (443)
Q Consensus 93 ~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGy-PviiKp~~gGGG~Gi~vv~~ 171 (443)
...++.|..+| -+|.+++.+-.|..+-++-+-. +||-....+.++..+|.++... .+++||.+|-||.|+..++.
T Consensus 114 ~~~~~~gv~VI-N~P~slR~~nEKL~~~~Fp~~i---~P~TLVT~d~~~I~~F~~~~k~~~iIlKPL~G~GG~gIf~i~~ 189 (349)
T PRK12458 114 RLAMRDGVLVL-NDPDGLRIANNKLYFQSFPEEV---RPTTHISRNREEIRAFLEESPSDKMILKPLQGSGGQGVFLIEK 189 (349)
T ss_pred HHHHHCCCEEE-CCHHHHHCCCCHHHHHHCCCCC---CCCEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECC
T ss_conf 87650898898-1859986170120064155547---9877986799999999998158838986467888876388635
Q ss_pred CH--HHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEE-EECCCCCCCCCCCCCCCCCCCCEE-----EE---EC
Q ss_conf 06--689999987543212589981688443420110331577-734787023656654211356225-----54---03
Q gi|254780268|r 172 EN--DLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIF-GDGMGNAIHFGERDCSVQRRNQKI-----WE---EA 240 (443)
Q Consensus 172 ~~--el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl-~D~~g~~v~l~erdCSiQrr~qki-----iE---ea 240 (443)
.+ .+...++...+ ++.|++.+||+..+.=..-|+ =| |..+..-.+--++.|-.|+- +. .+
T Consensus 190 ~d~~Nl~~I~e~~~~-------~~~vm~Q~flpei~~GDkRIilin--Gepi~~~~~~gal~RiP~~gd~R~Nl~~GG~~ 260 (349)
T PRK12458 190 SAESNLNQILEFYSG-------DGYVIAQEYIPGAEEGDVRILMLN--GEPLERDGRYAAMRRVPAEGDVRSNIHAGGTV 260 (349)
T ss_pred CCHHHHHHHHHHHHC-------CCCEEEECCCHHCCCCCEEEEEEC--CEEECCCCCEEEEECCCCCCCHHHHHHCCCCC
T ss_conf 743419999999704-------881999921003416886999999--99911445413565356676135565268863
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCH----HHHHHHCCCCHHHHHH
Q ss_conf 4455889999999999999886515434102458972-883499822765433201----6788632562011232
Q gi|254780268|r 241 HSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHP----VTEAITGIDLVHEQIY 311 (443)
Q Consensus 241 Pap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~----vte~~tgvdlv~~~~~ 311 (443)
-+..|++..++ .+.+++..|.-.|+.=|= +| =|. |+.|+|- +.| =-+..+|+|+...-+.
T Consensus 261 ~~~~Lt~~d~~----I~~~i~p~L~~~gl~fvG--iDvIG~-~LtEINV----TSPtgi~ei~~~~~~~~a~~~~d 325 (349)
T PRK12458 261 VKHTLTKEELE----LCEHIRPKLVRDGLFFVG--LDIVGD-KLIEVNV----FSPGGLGRINKLNNVDFSETIIN 325 (349)
T ss_pred CCCCCCHHHHH----HHHHHHHHHHHCCCEEEE--EEEECC-CEEEECC----CCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 03688999999----999999999987998999--986178-4568817----89602999987519986999999
No 82
>pfam11379 DUF3182 Protein of unknown function (DUF3182). This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=97.39 E-value=0.00031 Score=50.45 Aligned_cols=162 Identities=22% Similarity=0.295 Sum_probs=95.1
Q ss_pred HCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEE
Q ss_conf 80965999858557718776758579991899853000698999999987099899458531310976668898459216
Q gi|254780268|r 23 ELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKF 102 (443)
Q Consensus 23 elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~f 102 (443)
-+|.+...-|.+++.... ..|++|..+ | +-.-|.+.|+...+-=||=.-+-+=.|.+.....+
T Consensus 29 L~G~~~~g~~~~~~~~~~------~~Y~vP~~T-----L----v~~~A~~LGI~g~~DLfGGvVph~FvATKaItHpL-- 91 (355)
T pfam11379 29 LLGLRFAGAYDPPDHGPG------PPYLVPTDT-----L----VGAQARELGVRGPQDLFGGVVPHAFVATKAITHPL-- 91 (355)
T ss_pred HCCCCCCCCCCCCCCCCC------CEEECCCCC-----C----CHHHHHHCCCCCHHHCCCCCCCCCHHEEHHHCCCC--
T ss_conf 539975776784335788------547766742-----0----02348764898777645776674020001204768--
Q ss_pred ECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC--CCHHHHHCCCCCCCCEEEEEEECHHHHHHHH
Q ss_conf 26898999872189988776642244332433345579998732003--3012200023457821688875066899999
Q gi|254780268|r 103 IGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEI--GFPVLVKASAGGGGRGMRIAYSENDLSEAID 180 (443)
Q Consensus 103 IGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~i--GyPviiKp~~gGGG~Gi~vv~~~~el~~a~~ 180 (443)
|.+.+..-.| ....++.+..--+.||+++-+.+++..++..+ +-||-+||..+.||+|++++.+.++|..++.
T Consensus 92 --~~~~a~aP~G---Ws~~F~~~v~~~vLpG~tvFs~~DAr~Aa~~Ll~~G~VRlK~~~a~gG~GQ~vv~d~~~Le~~L~ 166 (355)
T pfam11379 92 --PRPDAVAPAG---WSRAFAARVRDAVLPGYTVFSLEDARDAAARLLKGGPVRLKPPRACGGRGQQVVADADALDAALA 166 (355)
T ss_pred --CCCCCCCCCC---CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEECCHHHHHHHHH
T ss_conf --8865569987---47999998762103873222678899999998537972550562237888557438999999987
Q ss_pred HHHHHHHCCCCCCCEEEEEEEEEEEECCE
Q ss_conf 87543212589981688443420110331
Q gi|254780268|r 181 QARSEALAAFGNDAVYIEKYLENPRHIEV 209 (443)
Q Consensus 181 ~a~~ea~~~fgd~~vlvEk~i~~~rhiEv 209 (443)
..-...... ..+.+|+.++.+--..|
T Consensus 167 a~~~~~l~~---~GlVLE~~L~~~~TySV 192 (355)
T pfam11379 167 ALDDRELAA---HGLVLEEDLDQPTTYSV 192 (355)
T ss_pred CCCHHHHHH---CCEEEECCCCCCCEEEE
T ss_conf 279888986---68687402577722555
No 83
>pfam03133 TTL Tubulin-tyrosine ligase family. Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypep
Probab=96.85 E-value=0.013 Score=38.90 Aligned_cols=44 Identities=32% Similarity=0.559 Sum_probs=34.7
Q ss_pred CCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
Q ss_conf 3012200023457821688875066899999875432125899816884434201
Q gi|254780268|r 150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENP 204 (443)
Q Consensus 150 GyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~ 204 (443)
+---++||..|.-|+||.++++.+++....+ +++.+|.|||+.|
T Consensus 66 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~-----------~~~~VvQkYI~~P 109 (291)
T pfam03133 66 RNTWIVKPSASARGRGIRITNDLSQILKQIQ-----------SRPLVVQKYIERP 109 (291)
T ss_pred CCEEEEEECCCCCCCCEEEECCHHHHHHHHC-----------CCCEEEEECCCCC
T ss_conf 9769991177689899698379999766523-----------7988975205775
No 84
>KOG3895 consensus
Probab=96.55 E-value=0.027 Score=36.67 Aligned_cols=202 Identities=16% Similarity=0.143 Sum_probs=117.3
Q ss_pred HHHCCCCEEECCCCHHH--CCHHH---HHHHHHCCCEEECCCHHHHHHHHCHHH----HHHHHHHCC---CCCCCCCCCC
Q ss_conf 98709989945853131--09766---688984592162689899987218998----877664224---4332433345
Q gi|254780268|r 70 CEVTGADAIHPGYGFLS--ENAKF---AEILEDHHIKFIGPSSEHIKIMGDKIT----AKKTAQQLG---IPVVPGSGEV 137 (443)
Q Consensus 70 a~~~~~daihPGyGfLs--En~~f---a~~~e~~Gi~fIGPs~~ai~~~gDK~~----~k~~a~~~G---VP~~p~~~~~ 137 (443)
.+....|+|+-+.+..| +|.+| ...+.-+||+++ -|-.++-.+-||-. .+++..++| +|.++-+...
T Consensus 151 ~RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yP 229 (488)
T KOG3895 151 VRSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYP 229 (488)
T ss_pred EEECCCCEEEECCCCHHHCCCCCHHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEECC
T ss_conf 431267778870530101013106899998876378642-0267898861456899999999875185445544001068
Q ss_pred CHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCC
Q ss_conf 57999873200330122000234578216888750668999998754321258998168844342011033157773478
Q gi|254780268|r 138 YPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMG 217 (443)
Q Consensus 138 ~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g 217 (443)
+-.+-+. .--||++||--.+-.|.|--+|.|.+|+.+. +......+ ..+-+|.||+.--.|-||-+|..|-
T Consensus 230 nHK~m~s---~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi-~svval~~-----Tyat~epFiDaKYDiriQKIG~nYK 300 (488)
T KOG3895 230 NHKEMLS---QPTYPVVVKVGHAHSGMGKIKVENHEDFQDI-ASVVALTK-----TYATAEPFIDAKYDIRIQKIGHNYK 300 (488)
T ss_pred CCHHHCC---CCCCCEEEEECCCCCCCCEEEECCHHHHHHH-HHHHHHHH-----HHHCCCCCCCCCCEEEHHHHHHHHH
T ss_conf 7442214---8877679982543356532552341556769-99999886-----2320023434322001565404688
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCH-HHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCC
Q ss_conf 702365665421135622554034455889-999999999999886515434102458972-883499822765
Q gi|254780268|r 218 NAIHFGERDCSVQRRNQKIWEEAHSPVISA-QDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTR 289 (443)
Q Consensus 218 ~~v~l~erdCSiQrr~qkiiEeaPap~l~~-~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~R 289 (443)
..+- + ||-. |=|- ..-+..|.. ..-++-.-+...+-+.+|-.-.+.|+-+.. +|+=|++|||--
T Consensus 301 aymR---t--sIsg-nWKt--NtGSamLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d~ 366 (488)
T KOG3895 301 AYMR---T--SISG-NWKT--NTGSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMDS 366 (488)
T ss_pred HHHH---H--HHCC-CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHEEEECCC
T ss_conf 8866---5--3126-7545--72089999998778899999989976288324665421056550232431235
No 85
>pfam02844 GARS_N Phosphoribosylglycinamide synthetase, N domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam00289).
Probab=96.44 E-value=0.053 Score=34.61 Aligned_cols=93 Identities=16% Similarity=0.228 Sum_probs=62.1
Q ss_pred EEEEECCCHHHHHHHHHHHHC--CCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf 686644709999999988880--965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r 4 KILIANRGEIALRILRACKEL--GIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG 81 (443)
Q Consensus 4 ~iLianrGeia~riira~~el--Gi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG 81 (443)
||||.+.|-=---+++++++- .-+..+.-.++-. ...+ +.+.+ +..|.+.|++.|+++++|.+..|
T Consensus 1 kILvIGsGgREHAi~~~l~~s~~~~~l~~~pgN~gi----~~~~-~~~~i-------~~~d~~~i~~~~~~~~idlviiG 68 (99)
T pfam02844 1 KVLVVGSGGREHALAWKLAQSPRVEKVYVAPGNPGT----AQLA-KNVNI-------DITDFEALADFAKEENIDLVVVG 68 (99)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCHH----HHHC-EEECC-------CCCCHHHHHHHHHHCCCCEEEEC
T ss_conf 989987887999999999649997769995898157----7747-50145-------84479999999998197499989
Q ss_pred CCHHHCCH---HHHHHHHHCCCEEECCCHHHHHH
Q ss_conf 53131097---66688984592162689899987
Q gi|254780268|r 82 YGFLSENA---KFAEILEDHHIKFIGPSSEHIKI 112 (443)
Q Consensus 82 yGfLsEn~---~fa~~~e~~Gi~fIGPs~~ai~~ 112 (443)
- |++ .++..+++.|+..+||+.++.++
T Consensus 69 P----E~pL~~Gl~D~l~~~gi~vfGP~k~aA~L 98 (99)
T pfam02844 69 P----EAPLVAGIVDALRAAGIPVFGPSKAAARL 98 (99)
T ss_pred C----CHHHHHHHHHHHHHCCCEEECCCHHHHHC
T ss_conf 6----06778788999986899179928688736
No 86
>pfam02750 Synapsin_C Synapsin, ATP binding domain. Ca dependent ATP binding in this ATP grasp fold. Function unknown.
Probab=96.44 E-value=0.046 Score=35.02 Aligned_cols=149 Identities=17% Similarity=0.183 Sum_probs=88.7
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf 42244332433345579998732003301220002345782168887506689999987543212589981688443420
Q gi|254780268|r 124 QQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLEN 203 (443)
Q Consensus 124 ~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~ 203 (443)
-+-..|.++-+.-++..+-. -.-.||+++|--.+-+|.|--.|.|..++.+..-.. +.. ..-+-.|.||+.
T Consensus 27 G~e~FPLIeQtyypn~kem~---~~~~fPvVvKvGhah~G~GKvkven~~~fqD~~s~v---a~~---~~y~T~EPfid~ 97 (203)
T pfam02750 27 GAEKFPLIEQTYYPNHKEML---TTPTFPVVVKIGHAHSGMGKVKVDNHHDFQDIASVV---ALT---KTYATTEPFIDS 97 (203)
T ss_pred CCCCCCCCEEECCCCHHHHC---CCCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHH---HHC---CCEEEECCCCCC
T ss_conf 86667753000269877742---588988899975415623589960777888887577---213---635886145454
Q ss_pred EEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCH-HHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCE
Q ss_conf 11033157773478702365665421135622554034455889-999999999999886515434102458972-8834
Q gi|254780268|r 204 PRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISA-QDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQF 281 (443)
Q Consensus 204 ~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEeaPap~l~~-~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~ 281 (443)
--.|-+|-+|+.+- + +.|- |+-.+ =|- -.-+..|.+ +..++-..+.-...+.+|-.-.+.||-+.. +|+-
T Consensus 98 kyDiriQKIG~~yk---a-y~R~-sISgn-WK~--NtGSamLEqi~mteryK~WvD~~S~lFGGLdIcav~ai~~KdGke 169 (203)
T pfam02750 98 KYDIRVQKIGNNYK---A-YMRT-SISGN-WKA--NTGSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVEALHGKDGRD 169 (203)
T ss_pred CEEEEEEEHHHHHH---H-HEEC-CCCCC-CCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCE
T ss_conf 25588520000447---6-6122-00378-544--703788865023689999999999873893079998777688875
Q ss_pred EEEECCCC
Q ss_conf 99822765
Q gi|254780268|r 282 YFIEMNTR 289 (443)
Q Consensus 282 yflEvN~R 289 (443)
|.+|||--
T Consensus 170 yIiEvnds 177 (203)
T pfam02750 170 YIIEVMDS 177 (203)
T ss_pred EEEEECCC
T ss_conf 68996265
No 87
>pfam06849 DUF1246 Protein of unknown function (DUF1246). This family represents the N-terminus of a number of hypothetical archaeal proteins of unknown function.
Probab=95.80 E-value=0.062 Score=34.09 Aligned_cols=109 Identities=19% Similarity=0.273 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHCCCEEEEECCCHHHCC--CCHHHCCEEEECCCCCCCCHHCCHH--HHHHHHHHCCCCEEECCCCHHHCC
Q ss_conf 999999988880965999858557718--7767585799918998530006989--999999870998994585313109
Q gi|254780268|r 13 IALRILRACKELGIPTVAVHSTADSGA--MHVRLADESVCIGPPSSKDSYLNIQ--QIVAACEVTGADAIHPGYGFLSEN 88 (443)
Q Consensus 13 ia~riira~~elGi~tv~v~s~~D~~a--~~~~~ADe~~~i~~~~~~~sYldi~--~ii~~a~~~~~daihPGyGfLsEn 88 (443)
-|+.|++-||+.|.+|++|... .+.- .....+||.+.+. +|-|+- .+-+--++.++--|.-|. +.+-
T Consensus 8 SALqIl~GAK~EGF~Tv~vc~~-gr~~~Y~~f~~~De~iv~d------~f~di~~~~~q~~L~~~N~I~IPhgS--fv~Y 78 (124)
T pfam06849 8 SALQILDGAKDEGFRTVAVCQK-GREKFYRRFPFVDEFIVVD------KFKDILDEEVQQKLRENNAIFIPHGS--FVAY 78 (124)
T ss_pred HHHHHHHHHHHCCCCEEEEEEC-CCCCHHHHCCCCCEEEEEC------CHHHHHHHHHHHHHHHCCEEEECCCC--EEEE
T ss_conf 3989972388739957899817-9752133268673799956------58998729999999988979974888--4676
Q ss_pred HHHHHHHH-HCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCC
Q ss_conf 76668898-459216268989998721899887766422443324
Q gi|254780268|r 89 AKFAEILE-DHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVP 132 (443)
Q Consensus 89 ~~fa~~~e-~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p 132 (443)
.. .+.+| +..+++.| +-.-++-..|+..-+++++++|+|.|.
T Consensus 79 ~G-~~~ie~~~~VP~FG-NR~lLrwEseR~~~~~lLe~Agi~~Pk 121 (124)
T pfam06849 79 VG-YDRVENEFKVPIFG-NRNLLRWESERDKERKLLEKAGIRYPK 121 (124)
T ss_pred EC-HHHHHHCCCCCEEC-CHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 55-89986027887004-788888765367799999976999983
No 88
>TIGR01380 glut_syn glutathione synthase; InterPro: IPR006284 These are the glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions. ; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process.
Probab=95.71 E-value=0.019 Score=37.83 Aligned_cols=246 Identities=19% Similarity=0.346 Sum_probs=134.7
Q ss_pred HHHHHHHHHCCCEEEEECCCHHHCCCCHHH--CC-EEEECCCCCCC-------CHHCCHHHHHHHHHHCCCCEEE----C
Q ss_conf 999998888096599985855771877675--85-79991899853-------0006989999999870998994----5
Q gi|254780268|r 15 LRILRACKELGIPTVAVHSTADSGAMHVRL--AD-ESVCIGPPSSK-------DSYLNIQQIVAACEVTGADAIH----P 80 (443)
Q Consensus 15 ~riira~~elGi~tv~v~s~~D~~a~~~~~--AD-e~~~i~~~~~~-------~sYldi~~ii~~a~~~~~daih----P 80 (443)
+.++..++..|-+.--. .++..|..... |+ .++.+.|.... ..+...-.--..+....+|+|+ |
T Consensus 21 ~alm~EaQ~RgH~~f~~--~~~~Ls~~~G~~~A~~~~~~~~pv~~~~~~WQv~~~w~~~~~~~~~~L~d~~d~vlMRkDP 98 (322)
T TIGR01380 21 FALMEEAQKRGHELFFY--EPGDLSVKNGRVFARAAPVKVLPVQLDDDRWQVKQDWYTLGEKVRLALKDELDVVLMRKDP 98 (322)
T ss_pred HHHHHHHHHCCCEEEEE--ECCCEEEECCHHHEEEEEEEEEEEEECCCCCEECHHHHHHHHHHHHCCCCCCCEEEECCCC
T ss_conf 99998985469389998--4361111023111002106686058718801011278887665420113574299984750
Q ss_pred CCCHHHCCHHH------HHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCCHH
Q ss_conf 85313109766------6889845921626898999872189988776642244332433345-5799987320033012
Q gi|254780268|r 81 GYGFLSENAKF------AEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV-YPHTAMPIAKEIGFPV 153 (443)
Q Consensus 81 GyGfLsEn~~f------a~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~-~~~ea~~~a~~iGyPv 153 (443)
-+ |.+| =+.++..|+..| -+|+++|.+--|..+-.+.. +.|=+.++ +..+...|.+++| =+
T Consensus 99 Pf-----~~~Y~yaT~lLe~~~~~g~~vi-N~P~~lRd~NEKl~~~~Fp~-----~~ppTLvt~~~~~ir~F~~e~~-di 166 (322)
T TIGR01380 99 PF-----DMEYIYATYLLELAEPTGTLVI-NSPQGLRDANEKLFALQFPK-----VIPPTLVTRDKAEIRAFLAEHG-DI 166 (322)
T ss_pred CC-----CHHHHHHHHHHHHHHHCCCEEE-ECCCHHHCCCHHHHHHCCCC-----CCCCCCEECCHHHHHHHHHHHH-CE
T ss_conf 98-----6315446778877842796798-48823224660345433412-----3588501067799999998751-25
Q ss_pred HHHCCCCCCCCEEEEEEE-CHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC--EEEEEECC--CCCC--------
Q ss_conf 200023457821688875-0668999998754321258998168844342011033--15777347--8702--------
Q gi|254780268|r 154 LVKASAGGGGRGMRIAYS-ENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE--VQIFGDGM--GNAI-------- 220 (443)
Q Consensus 154 iiKp~~gGGG~Gi~vv~~-~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE--vqVl~D~~--g~~v-------- 220 (443)
||||-+|.||.|+..... .-++...++...+ .+..+|++.+||+...|=- |-++ ||. |.|+
T Consensus 167 vLKPL~g~GG~gi~Rl~~~DpN~~~i~E~~~~-----~g~~~~~aQ~ylpei~~GDKRilL~-~G~Pig~a~~Rip~~gE 240 (322)
T TIGR01380 167 VLKPLDGMGGEGIFRLDPGDPNLNSILETLTQ-----LGREPVMAQRYLPEIKEGDKRILLI-DGEPIGYAVARIPAGGE 240 (322)
T ss_pred EECCCCCCCCCEEEEECCCCCCHHHHHHHHHH-----CCCCEEEEEECHHHHHHCCCEEEEE-CCEECCCCEEECCCCCC
T ss_conf 87266677784367617899855689888765-----2671687650205766179659997-88350010140278875
Q ss_pred -----CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--C-CCCEEEEECCCCCCC
Q ss_conf -----36566542113562255403445588999999999999988651543410245897--2-883499822765433
Q gi|254780268|r 221 -----HFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY--E-NGQFYFIEMNTRLQV 292 (443)
Q Consensus 221 -----~l~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~--~-~~~~yflEvN~Rlqv 292 (443)
..|.| +-|..||+..++ .|..++=.|.-+|+ +++ | =|+ |+.||| |
T Consensus 241 ~RgNlavGG~--------------~~a~~L~~rD~e----Ic~~~~P~L~~rGl----~fvGiDVIG~-~LTEvN----V 293 (322)
T TIGR01380 241 FRGNLAVGGR--------------GEAQELSERDRE----ICATVAPELKRRGL----LFVGIDVIGG-YLTEVN----V 293 (322)
T ss_pred CCHHHCCCCE--------------EEECCCCHHHHH----HHHHHCCCCCCCCE----EEEEEEEECC-CCEEEE----C
T ss_conf 0002002886--------------220026678999----99871610020774----7975467778-007983----1
Q ss_pred CCHH----HHHHHCCCCHH
Q ss_conf 2016----78863256201
Q gi|254780268|r 293 EHPV----TEAITGIDLVH 307 (443)
Q Consensus 293 eh~v----te~~tgvdlv~ 307 (443)
+.|- -+..+|+++-+
T Consensus 294 TSPTGi~Ei~~~~G~~~~~ 312 (322)
T TIGR01380 294 TSPTGIREIDRQKGVNIAE 312 (322)
T ss_pred CCCHHHHHHHHHCCCCHHH
T ss_conf 4645689887635855899
No 89
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=95.58 E-value=0.11 Score=32.31 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 45588999999999999988651543410245897288349982276
Q gi|254780268|r 242 SPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNT 288 (443)
Q Consensus 242 ap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~ 288 (443)
.|.|++++..++.+.+.++-+..|+ ---|||.+++|++|+|-.=|
T Consensus 263 ~~~L~d~~i~~La~l~~~iE~~fG~--PQDIEWa~~~g~l~iLQaRP 307 (870)
T PRK06241 263 SQTLTDEQILQLAELGRKIEAHFGC--PQDIEWCLADGQFYILQSRP 307 (870)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCC--CCCCCEEEECCEEEEEEECC
T ss_conf 8999999999999999999998389--64410156588799997256
No 90
>PRK06988 putative formyltransferase; Provisional
Probab=93.56 E-value=0.19 Score=30.68 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=36.5
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCC
Q ss_conf 970686644709999999988880965999858557718
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGA 39 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a 39 (443)
|-.||...+..++|+...+++.+.|++.++|+|.||+.+
T Consensus 1 m~~rivf~Gtp~fav~~L~~L~~~~~~v~~VvTqpD~p~ 39 (313)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNPT 39 (313)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 986199979988999999999978996799989989976
No 91
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.44 E-value=0.75 Score=26.43 Aligned_cols=164 Identities=16% Similarity=0.130 Sum_probs=89.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCHHHCCCCHHHC---CEEEECCCCCCCCHHCCHHHHHHHHHHCCCCE
Q ss_conf 706866447099999999888809-65999858557718776758---57999189985300069899999998709989
Q gi|254780268|r 2 ISKILIANRGEIALRILRACKELG-IPTVAVHSTADSGAMHVRLA---DESVCIGPPSSKDSYLNIQQIVAACEVTGADA 77 (443)
Q Consensus 2 ~~~iLianrGeia~riira~~elG-i~tv~v~s~~D~~a~~~~~A---De~~~i~~~~~~~sYldi~~ii~~a~~~~~da 77 (443)
|++|||.+-|-|+-.+++.|-.-| .+..+....++..+.-.... =++..+. -.|.+++.++.++. |+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD-------~~d~~al~~li~~~--d~ 71 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD-------AADVDALVALIKDF--DL 71 (389)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEC-------CCCHHHHHHHHHCC--CE
T ss_conf 9728998986667999999985789629998488889999875334663169942-------56758899987257--78
Q ss_pred EE-CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC---CHHHHHHHHHCCC-CH
Q ss_conf 94-5853131097666889845921626898999872189988776642244332433345---5799987320033-01
Q gi|254780268|r 78 IH-PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV---YPHTAMPIAKEIG-FP 152 (443)
Q Consensus 78 ih-PGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~---~~~ea~~~a~~iG-yP 152 (443)
|. -+-+|+ +..+.++|.++|+.++=.+-..- +....+..++++|+-.+++.... +.--+..+++++. =.
T Consensus 72 VIn~~p~~~--~~~i~ka~i~~gv~yvDts~~~~----~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~~~i 145 (389)
T COG1748 72 VINAAPPFV--DLTILKACIKTGVDYVDTSYYEE----PPWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELFDEI 145 (389)
T ss_pred EEEECCCHH--HHHHHHHHHHHCCCEEECCCCCC----HHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999287054--29999999985998897546775----065654898874907971667686457999999999861656
Q ss_pred HHHHCCCCCC------CCEEEEEEECHHHHHHHH
Q ss_conf 2200023457------821688875066899999
Q gi|254780268|r 153 VLVKASAGGG------GRGMRIAYSENDLSEAID 180 (443)
Q Consensus 153 viiKp~~gGG------G~Gi~vv~~~~el~~a~~ 180 (443)
.=+.-..|+. .++-..-++++.+...+.
T Consensus 146 ~si~iy~g~~g~~~~~~l~ya~tws~e~~l~e~~ 179 (389)
T COG1748 146 ESIDIYVGGLGEHGDNPLGYATTWSPEINLREYT 179 (389)
T ss_pred CEEEEEEECCCCCCCCCCCCEEEECHHHHHHHHC
T ss_conf 4899998258989887765326625788689754
No 92
>PRK09248 putative hydrolase; Validated
Probab=93.26 E-value=0.36 Score=28.68 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=10.6
Q ss_pred HHHHHHHHCCCEEEEE
Q ss_conf 9999888809659998
Q gi|254780268|r 16 RILRACKELGIPTVAV 31 (443)
Q Consensus 16 riira~~elGi~tv~v 31 (443)
..+++|+++|++.+++
T Consensus 23 E~~~aA~~~Gl~~i~i 38 (246)
T PRK09248 23 ENAAEAKQKGIKLFAI 38 (246)
T ss_pred HHHHHHHHCCCCEEEE
T ss_conf 9999999869968998
No 93
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=93.19 E-value=0.25 Score=29.84 Aligned_cols=140 Identities=11% Similarity=0.090 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCC-HHCCHHHHHHHHH----HCCCCEEECCCCHHHC
Q ss_conf 9999999888809659998585577187767585799918998530-0069899999998----7099899458531310
Q gi|254780268|r 13 IALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKD-SYLNIQQIVAACE----VTGADAIHPGYGFLSE 87 (443)
Q Consensus 13 ia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~-sYldi~~ii~~a~----~~~~daihPGyGfLsE 87 (443)
+..|..+.|.++|+.+|++....|..+.......+.+.+.--...+ ...|...+-..++ +..+-+||||= |
T Consensus 20 t~~ela~~A~~lGy~~iait~h~d~~~~~~~~~~~~~~i~v~~gvei~~~dp~~~~~l~~k~r~~~dIv~V~g~~----~ 95 (237)
T PRK00912 20 TVLELAEEASHLGFSGICLSYHSDKYPDLKSILPETEDFEIFRGVEIVEENPSKLRGLVGKFRKKVDVLIVHGGD----E 95 (237)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEECCC----H
T ss_conf 799999999986986899806753335433335777785688567997249788778899885248789994787----2
Q ss_pred CHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCC----CCCCCC---------CCHHHHHHHHHCCCCHHH
Q ss_conf 9766688984592162689899987218998877664224433----243334---------557999873200330122
Q gi|254780268|r 88 NAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPV----VPGSGE---------VYPHTAMPIAKEIGFPVL 154 (443)
Q Consensus 88 n~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~----~p~~~~---------~~~~ea~~~a~~iGyPvi 154 (443)
..+-.+|+...+-.|.-+...-.-.+-+...-+.|.+.||-. -|.... .+.......+++.|+|++
T Consensus 96 -~~nr~A~e~~~VDIL~~p~~~r~~~~~~hv~ak~A~e~gV~lEI~~~~~l~~~~~~R~~~i~n~~~l~~l~r~yg~piv 174 (237)
T PRK00912 96 -KVNRAACENPRVDILNHPYLNRKDSGLNHVLAKLAAENNVAIEIILRDILHSRGGRRARTLSQIRANLALHRKYDFPLV 174 (237)
T ss_pred -HHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf -8899987268987884654346886633899999997490799965244336721689999879999999986699889
Q ss_pred HHC
Q ss_conf 000
Q gi|254780268|r 155 VKA 157 (443)
Q Consensus 155 iKp 157 (443)
|-.
T Consensus 175 isS 177 (237)
T PRK00912 175 LSS 177 (237)
T ss_pred EEC
T ss_conf 967
No 94
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.08 E-value=0.84 Score=26.06 Aligned_cols=169 Identities=17% Similarity=0.150 Sum_probs=93.7
Q ss_pred EEEE-ECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC-C
Q ss_conf 6866-4470999999998888096599985855771877675857999189985300069899999998709989945-8
Q gi|254780268|r 4 KILI-ANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP-G 81 (443)
Q Consensus 4 ~iLi-anrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP-G 81 (443)
+||| -.-|-+..+++|.+.+.|+++.++.-+++....-....-+.+. + .+.|.+.+..+. .|+|+|.- +
T Consensus 2 ~ILV~GATG~lGr~vVr~Ll~~G~~Vr~lvRnp~ka~~l~~~Gve~v~-g------Dl~dpesl~~Al--~GvdaVi~~~ 72 (319)
T CHL00194 2 SLLVIGATGTLGRQIVRRALDEGYQVKCLVRNLRKAAFLKEWGAELVY-G------DLSLPETIPPAL--EGITAIIDAS 72 (319)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEE-E------CCCCHHHHHHHH--CCCCEEEEEC
T ss_conf 799989985899999999996889089995786763234215967999-4------278877899996--5996799945
Q ss_pred CCHHH-----CC------HHHHHHHHHCCCE-EE-----CCCH-HHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 53131-----09------7666889845921-62-----6898-999872189988776642244332433345579998
Q gi|254780268|r 82 YGFLS-----EN------AKFAEILEDHHIK-FI-----GPSS-EHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAM 143 (443)
Q Consensus 82 yGfLs-----En------~~fa~~~e~~Gi~-fI-----GPs~-~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~ 143 (443)
...-+ ++ ..+.++|+++|+. || |... .....+..|...-+.+++.|+|. +..--..-..
T Consensus 73 ~~~~~~~~~~~~vd~~g~~~li~AAk~aGVkr~V~lS~lga~~~~~~p~~~~K~~~E~~L~~Sgl~~---TIlRPs~F~q 149 (319)
T CHL00194 73 TSRPSDLNNAYQIDLEGKLALIEAAKAAKVKRFIFFSILNAEQYPQVPLMKIKSDIEEKLKQSGINY---TIFRLAGFFQ 149 (319)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCE---EEECCHHHHH
T ss_conf 6677886208898898899999999984998899961356666887567787999999998679985---9984739999
Q ss_pred HHHHCCCCHHHHH-CCCCCCCCE-EEEEEECHHHHHHHHHHHHH
Q ss_conf 7320033012200-023457821-68887506689999987543
Q gi|254780268|r 144 PIAKEIGFPVLVK-ASAGGGGRG-MRIAYSENDLSEAIDQARSE 185 (443)
Q Consensus 144 ~~a~~iGyPviiK-p~~gGGG~G-i~vv~~~~el~~a~~~a~~e 185 (443)
.+..++..|++-+ |..+.|+.+ +..+ +.+|+.++.-.+...
T Consensus 150 ~l~~~~a~pi~~~~~v~~~~~~~~ia~I-~~~DVA~~~a~aL~~ 192 (319)
T CHL00194 150 GLISQYAIPILDSQTIWITGESTPIAYI-DTQDAAKFALKSLSL 192 (319)
T ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCCC-CHHHHHHHHHHHHCC
T ss_conf 8899876776307857766998752887-799999999999589
No 95
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=93.06 E-value=0.76 Score=26.37 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=5.8
Q ss_pred HHHHHHHHHCCCCEE
Q ss_conf 999999987099899
Q gi|254780268|r 64 QQIVAACEVTGADAI 78 (443)
Q Consensus 64 ~~ii~~a~~~~~dai 78 (443)
+.|.++.++.+.+.|
T Consensus 76 ~~I~~~~~~~~P~~I 90 (410)
T cd01968 76 KAILEIIERYHPKAV 90 (410)
T ss_pred HHHHHHHHHCCCCEE
T ss_conf 999999985499889
No 96
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=92.51 E-value=0.95 Score=25.69 Aligned_cols=113 Identities=20% Similarity=0.357 Sum_probs=77.8
Q ss_pred CCCHHCCHHHHHHHHHHCCCCEE--ECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCC
Q ss_conf 53000698999999987099899--4585313109766688984592162689899987218998877664224433243
Q gi|254780268|r 56 SKDSYLNIQQIVAACEVTGADAI--HPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPG 133 (443)
Q Consensus 56 ~~~sYldi~~ii~~a~~~~~dai--hPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~ 133 (443)
..+.|+|++..++-.++.|.-+| +|..|.. +..|.+.+|+.|+-| ..- +.+-+.|.+.++.+.|+
T Consensus 90 ~tDP~~~~~~~L~~l~~~GfsGV~NfPTvgli--dG~fR~~LEetGmgy----~~E-------VEmIr~A~~~dl~T~~y 156 (268)
T pfam09370 90 GTDPFRDMDRFLDELKEMGFAGVQNFPTVGLI--DGEFRQNLEETGMGY----DLE-------VEMIRLAHEKGLLTTPY 156 (268)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEECCCEEEE--CCHHHHHHHHCCCCH----HHH-------HHHHHHHHHCCCCCCCE
T ss_conf 88974529999999997197744438822033--518887788808867----999-------99999999779833313
Q ss_pred CCCCCHHHHHHHHHCCCCHHHHH--CCCCCCCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 33455799987320033012200--0234578216888750668999998754
Q gi|254780268|r 134 SGEVYPHTAMPIAKEIGFPVLVK--ASAGGGGRGMRIAYSENDLSEAIDQARS 184 (443)
Q Consensus 134 ~~~~~~~ea~~~a~~iGyPviiK--p~~gGGG~Gi~vv~~~~el~~a~~~a~~ 184 (443)
. -+.+++.+.+ +-|--+++- ..-.||..|.....+.+|-.+..+....
T Consensus 157 v--f~~e~a~~Ma-~AGaDiIv~H~GlT~gG~iG~~~a~sl~~a~~~~~~i~~ 206 (268)
T pfam09370 157 V--FNVEEARAMA-EAGADIIVAHMGLTTGGTIGADTALSLDDCVELINAIAR 206 (268)
T ss_pred E--CCHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 2--6899999999-749989997677677767467776789999999999999
No 97
>KOG2799 consensus
Probab=92.49 E-value=0.45 Score=27.99 Aligned_cols=72 Identities=26% Similarity=0.418 Sum_probs=53.7
Q ss_pred HHHHC-HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC-HHHHHCCCCCCC-----------CEEEEEEECHHHHH
Q ss_conf 87218-998877664224433243334557999873200330-122000234578-----------21688875066899
Q gi|254780268|r 111 KIMGD-KITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF-PVLVKASAGGGG-----------RGMRIAYSENDLSE 177 (443)
Q Consensus 111 ~~~gD-K~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGy-PviiKp~~gGGG-----------~Gi~vv~~~~el~~ 177 (443)
+.+++ -.+..+++++.|+.+++++...+++|+.++++++|- -++||+-.-.|| .|+++|.+++|.++
T Consensus 21 r~L~~hey~~~~ll~~~Gv~vp~g~vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~ 100 (434)
T KOG2799 21 RSLGIHEYRSAALLRKYGINVPLGYVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKA 100 (434)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHH
T ss_conf 43468998899999971878887755688789999999708864599752010576667737676786379767588888
Q ss_pred HHHHH
Q ss_conf 99987
Q gi|254780268|r 178 AIDQA 182 (443)
Q Consensus 178 a~~~a 182 (443)
.-.+.
T Consensus 101 va~qm 105 (434)
T KOG2799 101 VASQM 105 (434)
T ss_pred HHHHH
T ss_conf 89976
No 98
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=92.35 E-value=0.09 Score=32.97 Aligned_cols=94 Identities=24% Similarity=0.373 Sum_probs=61.5
Q ss_pred CCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHH
Q ss_conf 59216268989998721899887766422443324333455799987320033012200023457821688875066899
Q gi|254780268|r 98 HHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSE 177 (443)
Q Consensus 98 ~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~ 177 (443)
.|+..+||+- +|==..||.+|=+|||| |...+=++-..=|+ |.|=+.|+ +
T Consensus 93 KGVLLvGPPG-----TGKTLLAKAvAGEA~VP---FF~iSGSdFVEMFV----------------GVGASRVR------D 142 (505)
T TIGR01241 93 KGVLLVGPPG-----TGKTLLAKAVAGEAGVP---FFSISGSDFVEMFV----------------GVGASRVR------D 142 (505)
T ss_pred CCEEEECCCC-----CCHHHHHHHHHCCCCCC---CEEECCCCEEECCC----------------CCCCEEHH------H
T ss_conf 7147317878-----42467887520258896---24740761011120----------------56400014------4
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCC-CC--CCCCCCCCCCCCCEEEE
Q ss_conf 999875432125899816884434201103315777347870-23--65665421135622554
Q gi|254780268|r 178 AIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNA-IH--FGERDCSVQRRNQKIWE 238 (443)
Q Consensus 178 a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~-v~--l~erdCSiQrr~qkiiE 238 (443)
.|++|++.| ||+| ||+ |++-+|=..|.. +- --||| |.-||-++|
T Consensus 143 LFeqAK~nA-------PCII--FID-----EIDAVGr~RGaG~lGGGnDERE---QTLNQLLVE 189 (505)
T TIGR01241 143 LFEQAKKNA-------PCII--FID-----EIDAVGRQRGAGELGGGNDERE---QTLNQLLVE 189 (505)
T ss_pred HHHHHHHHC-------CCEE--EEE-----CHHHCCCCCCCCCCCCCCCHHH---HHHHHHHEE
T ss_conf 579999718-------9705--640-----1000033356436676541355---433233133
No 99
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=92.24 E-value=0.89 Score=25.90 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=37.3
Q ss_pred CCCEEEEECCCCCCEE-E-ECC-CCCCCEECCCCCCCEEEEEE---ECCCHHHHHHHHHHHHHHC
Q ss_conf 4421588668998446-7-776-02387707776843389999---5599899999999876540
Q gi|254780268|r 348 PGEITYFHAPGGLGIR-M-DSA-SYQGYTVPSYYDSLIAKLIV---HGKNRKECMMRLNRALNEI 406 (443)
Q Consensus 348 ~G~i~~~~~p~~~gvR-v-Dt~-~~~G~~i~~~yDsmlaKiI~---~g~~R~~Ai~~l~~aL~~~ 406 (443)
+..++.+..|.+.... + ..- -.-|..+.+-|.++-.|++= .|..-.+-+.++..+|++.
T Consensus 290 S~~vt~~~~p~g~~~~~~~~~l~~~~~i~i~~g~g~~~~~~fRIg~mG~~~~~di~~~l~al~~~ 354 (356)
T cd06451 290 SPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEA 354 (356)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 98279997999999999999999978999978866568958986189899999999999999998
No 100
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; InterPro: IPR005975 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I.; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=91.46 E-value=1.1 Score=25.18 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCC--CHHHHHHHHHCCCC-HHHHH----C--------CCCCCCCEEEEEEECHHHHHHH
Q ss_conf 89988776642244332433345--57999873200330-12200----0--------2345782168887506689999
Q gi|254780268|r 115 DKITAKKTAQQLGIPVVPGSGEV--YPHTAMPIAKEIGF-PVLVK----A--------SAGGGGRGMRIAYSENDLSEAI 179 (443)
Q Consensus 115 DK~~~k~~a~~~GVP~~p~~~~~--~~~ea~~~a~~iGy-PviiK----p--------~~gGGG~Gi~vv~~~~el~~a~ 179 (443)
.+.+.|++.-+-.|...+++..+ +.|+++...+.+|+ |||+= . -+.+-..|-.-+.+-.++..+.
T Consensus 164 ~~~~~~riyPqP~v~lLvg~~ltpgDie~l~~~vEaFGL~P~~LPDLS~SLDGHLa~dd~s~~T~GGT~l~~i~~~g~s~ 243 (451)
T TIGR01285 164 RKADAKRIYPQPQVNLLVGSLLTPGDIEELRDMVEAFGLKPVVLPDLSRSLDGHLADDDFSPITLGGTTLEDIRELGQSA 243 (451)
T ss_pred CCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEECCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 56766400689824451778888867999999998608972240211002465008787005678997359998736887
Q ss_pred H-HHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCC-----CCC----CCCCCCCCCCCCCCEEEEECCCCCCCHHH
Q ss_conf 9-8754321258998168844342011033157773478-----702----36566542113562255403445588999
Q gi|254780268|r 180 D-QARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMG-----NAI----HFGERDCSVQRRNQKIWEEAHSPVISAQD 249 (443)
Q Consensus 180 ~-~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g-----~~v----~l~erdCSiQrr~qkiiEeaPap~l~~~~ 249 (443)
. .|..|.... -..++-+++-. ++.|+-.=.| ..+ .+..+-|. +|--.| -+.|..-+.+
T Consensus 244 ~tlaIGe~mr~--aA~~l~~R~g~-----~y~vF~~L~GLeavD~F~~~L~~~SG~~Cd---hhfPfv--P~vP~~~~Rq 311 (451)
T TIGR01285 244 VTLAIGESMRA--AAELLKDRCGV-----PYEVFPSLMGLEAVDAFVSVLSKISGSRCD---HHFPFV--PAVPERFERQ 311 (451)
T ss_pred HHHHHHHHHHH--HHHHHHHHCCC-----CCHHCCCCCCHHHHHHHHHHHHHHHHHHCC---CCCCCC--CCCCHHHHHH
T ss_conf 46887776544--46752212177-----400101224468999999999998443215---678988--9886334520
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999999998865154
Q gi|254780268|r 250 RTEIGETCVKAMKKIDY 266 (443)
Q Consensus 250 ~~~i~~~A~~~~~~~g~ 266 (443)
|.+|+++.+...=-+|=
T Consensus 312 R~QL~DA~LD~HF~~gG 328 (451)
T TIGR01285 312 RAQLQDAMLDTHFFLGG 328 (451)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 78899999988774131
No 101
>KOG2157 consensus
Probab=91.36 E-value=0.65 Score=26.88 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=37.9
Q ss_pred CCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEEEE
Q ss_conf 301220002345782168887506689999987543212589-9816884434201
Q gi|254780268|r 150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFG-NDAVYIEKYLENP 204 (443)
Q Consensus 150 GyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fg-d~~vlvEk~i~~~ 204 (443)
-..-++||+.-.=|+|+.++++.+++.+.+.....+ .+.. ++...+-+||+.|
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~--~s~~~~~~~vv~~yi~~p 252 (497)
T KOG2157 199 RSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSF--ISENNDEGYVVSAYIDRP 252 (497)
T ss_pred CCEEEECCCCCCCCCEEEEECCHHHHHHHHHCCCCC--CCCCCCCCCEEEEECCCC
T ss_conf 666896443210165268862356656543123332--332333442443102673
No 102
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=91.14 E-value=1.4 Score=24.50 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=70.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHH---CCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE
Q ss_conf 7068664470999999998888---0965999858557718776758579991899853000698999999987099899
Q gi|254780268|r 2 ISKILIANRGEIALRILRACKE---LGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI 78 (443)
Q Consensus 2 ~~~iLianrGeia~riira~~e---lGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai 78 (443)
.++++|.+.|+.+.++++..++ +|++.+.+|.++...... ++ ---+++++++.++++++|-|
T Consensus 144 ~r~v~IvG~~~~~~~l~~~i~~~p~~G~~vvG~~dd~~~~~~~---------~~------~lG~~~~l~~~~~~~~id~V 208 (464)
T PRK10124 144 TRMVAVAGDLPAGQMLLESFRNQPWLGFEVVGVYHDPKPGGVS---------ND------WAGNLQQLVEDAKAGKIHNV 208 (464)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC---------CC------CCCCHHHHHHHHHHCCCCEE
T ss_conf 4389998388899999999972966796699996688766678---------99------87899999999986899989
Q ss_pred ECCCCHHHCC---HHHHHHHHHCCCEE-ECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 4585313109---76668898459216-268989998721899887766422443324333
Q gi|254780268|r 79 HPGYGFLSEN---AKFAEILEDHHIKF-IGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG 135 (443)
Q Consensus 79 hPGyGfLsEn---~~fa~~~e~~Gi~f-IGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~ 135 (443)
+---. +++. .++...|++.++.+ +-|.--.......+. -.=.|+|++.-..
T Consensus 209 ~ialp-~~~~~~i~~lv~~l~~~~v~v~~vPd~~~~~~~~~~~-----~~~~g~P~i~~~~ 263 (464)
T PRK10124 209 YIAMS-MCDGARVKKLVHQLADTTCSVLLIPDVFTFNILHSRL-----EEMNGVPVVPLYD 263 (464)
T ss_pred EEECC-CCHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCE-----EEECCEEEEEEEC
T ss_conf 99668-2368899999999961895599946546521456631-----6887856899746
No 103
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=90.98 E-value=1.4 Score=24.52 Aligned_cols=120 Identities=26% Similarity=0.383 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHC----CHHHHHHHHHHCCCCEEECCCCHHH
Q ss_conf 099999999888809659998585577187767585799918998530006----9899999998709989945853131
Q gi|254780268|r 11 GEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYL----NIQQIVAACEVTGADAIHPGYGFLS 86 (443)
Q Consensus 11 Geia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYl----di~~ii~~a~~~~~daihPGyGfLs 86 (443)
+|+. ++.+.++++|++-+.+.++. +.++.+. .++....|. =...+.+.|++.|.+.|.=|
T Consensus 39 ~E~e-~a~~~a~~~gi~~~~i~~~~--------l~~~~~~--~N~~~RCy~CK~~l~~~l~~~a~~~g~~~v~dG----- 102 (202)
T cd01990 39 RELE-EAKRLAKEIGIRHEVIETDE--------LDDPEFA--KNPPDRCYLCKKALYEALKEIAEELGLDVVLDG----- 102 (202)
T ss_pred HHHH-HHHHHHHHCCCCEEEEECCH--------HHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-----
T ss_conf 8999-99999986398579973411--------1016554--597556229989999999999996799789415-----
Q ss_pred CCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHHCCCCHHHHHCCCCCCCCE
Q ss_conf 097666889845921626898999872189988776642244332433-3455799987320033012200023457821
Q gi|254780268|r 87 ENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGS-GEVYPHTAMPIAKEIGFPVLVKASAGGGGRG 165 (443)
Q Consensus 87 En~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~-~~~~~~ea~~~a~~iGyPviiKp~~gGGG~G 165 (443)
.|++= +.+ -.|.. +.+.+.||-. |.. ...+.++..+.+.++|+|+--||+. .+..
T Consensus 103 tn~dD---l~d-----~RPGl-------------~A~~e~~v~s-PL~e~gl~K~eVR~la~~lgLp~~~kp~~--~CLa 158 (202)
T cd01990 103 TNADD---LGD-----YRPGL-------------KALRELGVRS-PLAEAGLGKAEIRELARELGLPTWDKPAM--ACLA 158 (202)
T ss_pred CCCCC---CCC-----CCCCH-------------HHHHHCCCCC-CHHHCCCCHHHHHHHHHHCCCCCCCCCCC--CCEE
T ss_conf 75763---235-----57868-------------8998769988-52651978899999999839985668998--7546
Q ss_pred EEEEE
Q ss_conf 68887
Q gi|254780268|r 166 MRIAY 170 (443)
Q Consensus 166 i~vv~ 170 (443)
.|+.+
T Consensus 159 sRip~ 163 (202)
T cd01990 159 SRIPY 163 (202)
T ss_pred EECCC
T ss_conf 66578
No 104
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=90.82 E-value=1.2 Score=25.05 Aligned_cols=16 Identities=56% Similarity=0.968 Sum_probs=7.9
Q ss_pred HHHHHHHHCCCCCCCC
Q ss_conf 8877664224433243
Q gi|254780268|r 118 TAKKTAQQLGIPVVPG 133 (443)
Q Consensus 118 ~~k~~a~~~GVP~~p~ 133 (443)
.+|++.++.|+|++|-
T Consensus 121 V~~~~~~~~gipVIpv 136 (421)
T cd01976 121 VARKASKELGIPVVPV 136 (421)
T ss_pred HHHHHHHHCCCCEEEE
T ss_conf 9999877529988998
No 105
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=90.68 E-value=1.5 Score=24.38 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=8.0
Q ss_pred HHHHHHHHHHCCCCEE
Q ss_conf 8999999987099899
Q gi|254780268|r 63 IQQIVAACEVTGADAI 78 (443)
Q Consensus 63 i~~ii~~a~~~~~dai 78 (443)
.+.|.++.++.+.++|
T Consensus 70 ~~ai~~~~~~~~P~~I 85 (428)
T cd01965 70 IEALKNLLSRYKPDVI 85 (428)
T ss_pred HHHHHHHHHHCCCCEE
T ss_conf 9999999984499889
No 106
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=90.13 E-value=1.7 Score=23.90 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=39.7
Q ss_pred HCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHC---HHHHHHHHHHCCCCCCCCCCC
Q ss_conf 06989999999870998994585313109766688984592162689899987218---998877664224433243334
Q gi|254780268|r 60 YLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGD---KITAKKTAQQLGIPVVPGSGE 136 (443)
Q Consensus 60 Yldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gD---K~~~k~~a~~~GVP~~p~~~~ 136 (443)
+..+.+++++|.+.+...|.- -++..+..+|- -...+.++++++||+.-...-
T Consensus 28 ~e~~~Avi~AAee~~sPvIlq------------------------~~~~~~~~~g~~~~~~~~~~~a~~~~VPV~lHLDH 83 (284)
T PRK09195 28 LETMQVVVETAAELHSPVIIA------------------------GTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDH 83 (284)
T ss_pred HHHHHHHHHHHHHHCCCEEEE------------------------CCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 999999999999959998999------------------------88516644798999999999998779988996698
Q ss_pred CCHHHHHHHHHCCCCH-HHHHCC
Q ss_conf 5579998732003301-220002
Q gi|254780268|r 137 VYPHTAMPIAKEIGFP-VLVKAS 158 (443)
Q Consensus 137 ~~~~ea~~~a~~iGyP-viiKp~ 158 (443)
...-+....+-+.||. ||+-.|
T Consensus 84 ~~~~e~i~~ai~~GftSVM~DgS 106 (284)
T PRK09195 84 HEKFDDIAQKVRSGVRSVMIDGS 106 (284)
T ss_pred CCCHHHHHHHHHCCCCEEEEECC
T ss_conf 79999999999749986886389
No 107
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=89.69 E-value=1.8 Score=23.67 Aligned_cols=120 Identities=21% Similarity=0.256 Sum_probs=73.1
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE--
Q ss_conf 970686644709999999988880965999858557718776758579991899853000698999999987099899--
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI-- 78 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai-- 78 (443)
|..+|||.+--.=|..+.+.+..++ ..+.+.|-.+.-+......-. ...+ -+++.+.+.+..+++++|.+
T Consensus 1 ~~~~ilvlGGT~Dar~la~~L~~~~-~~~~~ss~t~~g~~l~~~~~~-~~~~------G~l~~e~l~~~l~e~~i~llID 72 (257)
T COG2099 1 SMMRILLLGGTSDARALAKKLAAAP-VDIILSSLTGYGAKLAEQIGP-VRVG------GFLGAEGLAAFLREEGIDLLID 72 (257)
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHCCCC-EEEC------CCCCHHHHHHHHHHCCCCEEEE
T ss_conf 9835999826389999999862068-617999703444241110588-6652------7688789999999749888997
Q ss_pred --ECCCCH-HHCCHHHHHHHHHCCCEEEC---CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf --458531-31097666889845921626---8989998721899887766422443324333455799987320033
Q gi|254780268|r 79 --HPGYGF-LSENAKFAEILEDHHIKFIG---PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIG 150 (443)
Q Consensus 79 --hPGyGf-LsEn~~fa~~~e~~Gi~fIG---Ps~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iG 150 (443)
|| |-+ .|+| .+++|++.||+++- |+...- + ..|..+.+.+|+.+.+.+.|
T Consensus 73 ATHP-yAa~iS~N--a~~aake~gipy~r~eRP~~~~~---g----------------d~~~~V~d~~ea~~~~~~~~ 128 (257)
T COG2099 73 ATHP-YAARISQN--AARAAKETGIPYLRLERPPWAPN---G----------------DNWIEVADIEEAAEAAKQLG 128 (257)
T ss_pred CCCH-HHHHHHHH--HHHHHHHHCCCEEEEECCCCCCC---C----------------CCEEEECCHHHHHHHHHCCC
T ss_conf 8875-79999899--99999985996799877755457---9----------------96698458999999875047
No 108
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=89.58 E-value=1.2 Score=24.98 Aligned_cols=210 Identities=17% Similarity=0.260 Sum_probs=108.2
Q ss_pred HHHHHHHHHCCCEEEEEC--CCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE--ECC-CCHHHCCH
Q ss_conf 999998888096599985--8557718776758579991899853000698999999987099899--458-53131097
Q gi|254780268|r 15 LRILRACKELGIPTVAVH--STADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI--HPG-YGFLSENA 89 (443)
Q Consensus 15 ~riira~~elGi~tv~v~--s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai--hPG-yGfLsEn~ 89 (443)
+.-|+.+.+.|.+-|=+- +..+..+. .....+ ..+| .-.+--.| ..+.-.+-++++|.+ -|| +||-.--.
T Consensus 39 v~QI~~L~~aG~dIVRvtv~~~e~A~A~-~~Ik~~-~~vP--LVaDiHf~-~rla~~~~~~g~~k~RINPGNig~~~~v~ 113 (361)
T COG0821 39 VAQIKALERAGCDIVRVTVPDMEAAEAL-KEIKQR-LNVP--LVADIHFD-YRLALEAAECGVDKVRINPGNIGFKDRVR 113 (361)
T ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHH-HHHHHH-CCCC--EEEEEECC-HHHHHHHHHCCCCEEEECCCCCCCHHHHH
T ss_conf 9999999981897899936997899999-999984-7998--79873056-89999756427426987786567367799
Q ss_pred HHHHHHHHCCCEE-ECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEE
Q ss_conf 6668898459216-268989998721899887766422443324333455799987320033012200023457821688
Q gi|254780268|r 90 KFAEILEDHHIKF-IGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRI 168 (443)
Q Consensus 90 ~fa~~~e~~Gi~f-IGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~v 168 (443)
+..+++.+.|++. ||-++-+++ |+++++.|-|++... +.|.-+-.+.++++||+=++=.. +
T Consensus 114 ~vVe~Ak~~g~piRIGVN~GSLe--------k~~~~ky~~pt~eal-veSAl~~a~~~e~l~f~~i~iS~---------K 175 (361)
T COG0821 114 EVVEAAKDKGIPIRIGVNAGSLE--------KRLLEKYGGPTPEAL-VESALEHAELLEELGFDDIKVSV---------K 175 (361)
T ss_pred HHHHHHHHCCCCEEEECCCCCHH--------HHHHHHHCCCCHHHH-HHHHHHHHHHHHHCCCCCEEEEE---------E
T ss_conf 99999997599879952668616--------999998547987899-99999999999977998679998---------7
Q ss_pred EEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECC-CCC---CCCCC------CCCCCCCCCCEEEE
Q ss_conf 875066899999875432125899816884434201103315777347-870---23656------65421135622554
Q gi|254780268|r 169 AYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGM-GNA---IHFGE------RDCSVQRRNQKIWE 238 (443)
Q Consensus 169 v~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~-g~~---v~l~e------rdCSiQrr~qkiiE 238 (443)
+.+..++-++|+..... ++.|-|+-|.=-|.+. |.+ +.+|. -| ++ -|-
T Consensus 176 ~Sdv~~~v~aYr~lA~~---------------~dyPLHLGvTEAG~~~~G~VkSa~alg~LL~eGIGD-TI------RVS 233 (361)
T COG0821 176 ASDVQLMVAAYRLLAKR---------------CDYPLHLGVTEAGMGFKGIVKSAAALGALLSEGIGD-TI------RVS 233 (361)
T ss_pred CCCHHHHHHHHHHHHHH---------------CCCCCCCCEECCCCCCCCEEHHHHHHHHHHHHCCCC-EE------EEE
T ss_conf 38789999999999986---------------687720141035676450007789999999725776-59------996
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 034455889999999999999886515434102458972
Q gi|254780268|r 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE 277 (443)
Q Consensus 239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~ 277 (443)
.+|.| .+|. ..+..+.+.+|++. ..++|.-.
T Consensus 234 Lt~~P--~~EV-----~V~~eILqslglR~-~~v~~iaC 264 (361)
T COG0821 234 LTADP--VEEV-----KVAQEILQSLGLRS-RGVEVIAC 264 (361)
T ss_pred CCCCC--HHHH-----HHHHHHHHHCCCCC-CCCEEEEC
T ss_conf 58883--2557-----99999999808663-58669989
No 109
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=89.53 E-value=1.4 Score=24.58 Aligned_cols=17 Identities=12% Similarity=0.091 Sum_probs=8.0
Q ss_pred HHHHHHHHHHCCCCEEE
Q ss_conf 89999999870998994
Q gi|254780268|r 63 IQQIVAACEVTGADAIH 79 (443)
Q Consensus 63 i~~ii~~a~~~~~daih 79 (443)
.++|.++.++.+.++|.
T Consensus 73 ~~aI~~~~~~~~P~~i~ 89 (429)
T cd03466 73 KKGLKNVIEQYNPEVIG 89 (429)
T ss_pred HHHHHHHHHHCCCCEEE
T ss_conf 99999999841998899
No 110
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=89.35 E-value=1.9 Score=23.50 Aligned_cols=88 Identities=23% Similarity=0.326 Sum_probs=58.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEE--CCC--HHHCC-CCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCE-E
Q ss_conf 866447099999999888809659998--585--57718-77675857999189985300069899999998709989-9
Q gi|254780268|r 5 ILIANRGEIALRILRACKELGIPTVAV--HST--ADSGA-MHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADA-I 78 (443)
Q Consensus 5 iLianrGeia~riira~~elGi~tv~v--~s~--~D~~a-~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~da-i 78 (443)
|+.+|+=+=|++..+++-|-|++++=| -|+ .|... .+.... +-..||-+ +-||.+++.+ |.+.|+|= |
T Consensus 13 Vi~~~~~~~A~~lA~aL~egG~~~~EvTlRT~~A~~aI~~l~~~~P-~~~~iGAG----TVL~~~Q~~~-A~~AGA~F~v 86 (205)
T TIGR01182 13 VIRIDDVEDALPLAKALIEGGLRVLEVTLRTPVALEAIRALRKEVP-KDALIGAG----TVLNPEQLRQ-AVAAGAQFIV 86 (205)
T ss_pred EEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCC-CCCEECCC----CCCCHHHHHH-HHHCCCCEEE
T ss_conf 8872678777899999986798089885147216899999997282-33487167----6489899999-9970895787
Q ss_pred ECCCCHHHCCHHHHHHHHHCCCEEE
Q ss_conf 4585313109766688984592162
Q gi|254780268|r 79 HPGYGFLSENAKFAEILEDHHIKFI 103 (443)
Q Consensus 79 hPGyGfLsEn~~fa~~~e~~Gi~fI 103 (443)
=|| -|+++++.|.+.|+.+|
T Consensus 87 SPG-----~~p~l~~~~~~~~~P~i 106 (205)
T TIGR01182 87 SPG-----LTPELAKHAKDKGIPII 106 (205)
T ss_pred CCC-----CCHHHHHHHHHCCCCEE
T ss_conf 697-----88899999850888121
No 111
>TIGR00268 TIGR00268 conserved hypothetical protein TIGR00268; InterPro: IPR005232 This family of conserved hypothetical proteins has no known function but is predicted to be part of the wider PP-loop superfamily ..
Probab=88.62 E-value=1.7 Score=23.91 Aligned_cols=132 Identities=20% Similarity=0.297 Sum_probs=76.1
Q ss_pred EEEEEECCCHH-HHHHHHHHHH-CCCEEEEECCC------------HHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHH
Q ss_conf 06866447099-9999998888-09659998585------------5771877675857999189985300069899999
Q gi|254780268|r 3 SKILIANRGEI-ALRILRACKE-LGIPTVAVHST------------ADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVA 68 (443)
Q Consensus 3 ~~iLianrGei-a~riira~~e-lGi~tv~v~s~------------~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~ 68 (443)
||||||=.|=| ..-+..-|.+ +|.+++||.-- +..+|.....+.+.+.+
T Consensus 16 k~~~IAySGGvDS~lla~v~~~v~g~~~lait~~sP~~sp~~el~~A~~~A~~~g~~he~~~~----------------- 78 (263)
T TIGR00268 16 KKVLIAYSGGVDSSLLAAVCSDVAGTEVLAITVVSPSISPRRELEDAKAIAKEIGVKHELVKI----------------- 78 (263)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECC-----------------
T ss_conf 816999517465899999998753101135787627757354489999999880830121100-----------------
Q ss_pred HHHHCCCCEEE-CCCCHHHCC----------HHHHHHHHHCCCEE--ECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99870998994-585313109----------76668898459216--268989998721899887766422443324333
Q gi|254780268|r 69 ACEVTGADAIH-PGYGFLSEN----------AKFAEILEDHHIKF--IGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG 135 (443)
Q Consensus 69 ~a~~~~~daih-PGyGfLsEn----------~~fa~~~e~~Gi~f--IGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~ 135 (443)
|-+. |-|--=.|| ..+...-++.|+.. =|.+.+ ++.++|--.|..-+-.|+. -||..
T Consensus 79 -------d~~~n~~f~~N~~~RCY~CK~~~~~~L~~~a~~~gy~~V~dGtN~d--DL~~~RPG~~A~~E~~g~~-SP~ae 148 (263)
T TIGR00268 79 -------DKMANPNFRANVEERCYFCKKKVLSILVKLAEKRGYDVVVDGTNAD--DLEDHRPGLRAVKELNGVY-SPWAE 148 (263)
T ss_pred -------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCC--CCCCCCCHHHHHHHCCCCC-CCCCC
T ss_conf -------1236850016885444154888999989999863995798234620--0023675135676607886-87200
Q ss_pred -CCCHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf -45579998732003301220002345
Q gi|254780268|r 136 -EVYPHTAMPIAKEIGFPVLVKASAGG 161 (443)
Q Consensus 136 -~~~~~ea~~~a~~iGyPviiKp~~gG 161 (443)
.++..|.+++|+.+|||.--||+...
T Consensus 149 f~I~K~eir~ia~~lg~~~~DKP~~~C 175 (263)
T TIGR00268 149 FGITKKEIREIAKSLGLSFYDKPSEAC 175 (263)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 256879999999974889888866210
No 112
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=88.52 E-value=2.2 Score=23.11 Aligned_cols=72 Identities=21% Similarity=0.324 Sum_probs=30.2
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHH-HHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 7766422443324333455799987320033012-200023457821688875066899999875432125899816884
Q gi|254780268|r 120 KKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPV-LVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 120 k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPv-iiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
-+.+.+-|.-|.|+... ++.-++. .+++|--. |-=.+-=|+|+|+ .|+..|+-..+++ +-+|+|+
T Consensus 115 ae~Lv~eGF~VlpY~~~-D~v~akr-Led~Gc~avMPlgsPIGSg~Gl---~n~~~l~~i~e~~---------~vPvIVD 180 (246)
T pfam05690 115 AEILVKEGFTVLPYTTD-DPVLARR-LEEAGCAAVMPLGAPIGSGLGL---RNPENLRIIIEEA---------DVPVIVD 180 (246)
T ss_pred HHHHHHCCCEEEEECCC-CHHHHHH-HHHCCCEEEEECCCCCCCCCCC---CCHHHHHHHHHHC---------CCCEEEE
T ss_conf 99999789989886179-9899999-9875984986224401368886---8999999999967---------9988984
Q ss_pred EEEEEEE
Q ss_conf 4342011
Q gi|254780268|r 199 KYLENPR 205 (443)
Q Consensus 199 k~i~~~r 205 (443)
-=|..|-
T Consensus 181 AGiG~pS 187 (246)
T pfam05690 181 AGIGTPS 187 (246)
T ss_pred CCCCCHH
T ss_conf 8989678
No 113
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=88.49 E-value=0.97 Score=25.64 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=7.0
Q ss_pred HHHHHHHHHHCEECCC
Q ss_conf 9999987654088263
Q gi|254780268|r 396 MMRLNRALNEIIIDGI 411 (443)
Q Consensus 396 i~~l~~aL~~~~I~Gv 411 (443)
++.+....+++.+.||
T Consensus 302 ~~~i~~lvke~~aDGV 317 (377)
T TIGR03190 302 YDHVLGLAKEYNVQGA 317 (377)
T ss_pred HHHHHHHHHHHCCCEE
T ss_conf 9999999999688999
No 114
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=88.43 E-value=2.2 Score=23.07 Aligned_cols=88 Identities=16% Similarity=0.214 Sum_probs=43.5
Q ss_pred EEEEEECCCHHHHHHHHHHHH---CCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEE
Q ss_conf 068664470999999998888---09659998585577187767585799918998530006989999999870998994
Q gi|254780268|r 3 SKILIANRGEIALRILRACKE---LGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH 79 (443)
Q Consensus 3 ~~iLianrGeia~riira~~e---lGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daih 79 (443)
+|+||.+.|+.+.++++..++ +|++.+.+..++....... . +.+ ..-+++.+.++++++++|-|.
T Consensus 129 rrvLIIG~g~~~~~l~~~l~~~~~~G~~vvG~vdd~~~~~~~~--~-------~~p---vlg~~~~l~~~i~~~~ideVi 196 (451)
T TIGR03023 129 RRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDARTGV--R-------GVP---VLGKLDDLEELIREGEVDEVY 196 (451)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC--C-------CCC---CCCCHHHHHHHHHHCCCCEEE
T ss_conf 5499996868999999999719436848999983885444445--7-------997---369899999999967998899
Q ss_pred CCCCHHHC--CHHHHHHHHHCCCEE
Q ss_conf 58531310--976668898459216
Q gi|254780268|r 80 PGYGFLSE--NAKFAEILEDHHIKF 102 (443)
Q Consensus 80 PGyGfLsE--n~~fa~~~e~~Gi~f 102 (443)
=--...++ -.++...|++.|+.+
T Consensus 197 ia~~~~~~~~~~~li~~~~~~~v~v 221 (451)
T TIGR03023 197 IALPLAAEKRILELLDALEDLTVDV 221 (451)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 9548355689999999986459879
No 115
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=88.34 E-value=2.3 Score=23.03 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=24.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 866447099999999888809659998
Q gi|254780268|r 5 ILIANRGEIALRILRACKELGIPTVAV 31 (443)
Q Consensus 5 iLianrGeia~riira~~elGi~tv~v 31 (443)
||..++-|-|+...+++-+-|+.+|=|
T Consensus 18 Vlr~~~~e~a~~~a~Ali~gGi~~IEI 44 (211)
T COG0800 18 VIRGDDVEEALPLAKALIEGGIPAIEI 44 (211)
T ss_pred EEEECCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 997089999999999999769876999
No 116
>PRK13114 consensus
Probab=88.10 E-value=2.3 Score=22.93 Aligned_cols=174 Identities=13% Similarity=0.134 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHH---HC--CCCEEECCCC
Q ss_conf 99999999888809659998---5855771877675857999189985300069899999998---70--9989945853
Q gi|254780268|r 12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACE---VT--GADAIHPGYG 83 (443)
Q Consensus 12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~---~~--~~daihPGyG 83 (443)
+.-.++++++-+.|...+=+ ||||=..-+-.+.|.+.. |. +=.+.+.++++.+ +. +.--|.=||-
T Consensus 27 ~~t~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~rA-L~------~G~~l~~~f~~v~~~r~~~~~~PivlM~Y~ 99 (266)
T PRK13114 27 GDTAANLDALVAGGADVIELGMPFTDPMADGPAIQAANLRS-LA------AGTTTADIFRIAAEFRQRHPEVPLVLMGYA 99 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHHHHCCCCCCEEEEEEH
T ss_conf 99999999999769999997999888677689999999999-98------699799999999998741899887998630
Q ss_pred --HHHCC-HHHHHHHHHCCCEE-ECC--CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHH-HHHHHHC-CCCHHHH
Q ss_conf --13109-76668898459216-268--989998721899887766422443324333455799-9873200-3301220
Q gi|254780268|r 84 --FLSEN-AKFAEILEDHHIKF-IGP--SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHT-AMPIAKE-IGFPVLV 155 (443)
Q Consensus 84 --fLsEn-~~fa~~~e~~Gi~f-IGP--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~e-a~~~a~~-iGyPvii 155 (443)
++.-. ..|++.|.++|+.= |=| +++ .-...+..+++.|+..++.....+.++ ....++. -||=..+
T Consensus 100 N~i~~~G~~~F~~~~~~aGvdG~IipDLP~e------E~~~~~~~~~~~gi~~I~liaPtt~~~Ri~~i~~~a~gFiY~v 173 (266)
T PRK13114 100 NPMVRRGPDWFAAECKKAGVDGVICVDIPPE------EDAELGPALRAAGIDPIRLATPTTDAARLPAVLEGASGFLYYV 173 (266)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCHH------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 1999864999999999749977984589978------8899999999749972677569997999999997389958998
Q ss_pred HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEC
Q ss_conf 0023457821688875066899999875432125899816884434201103
Q gi|254780268|r 156 KASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHI 207 (443)
Q Consensus 156 Kp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhi 207 (443)
= ..|- -|.+ -...+++.+.+++.++.. +-++.+-==|..+.|+
T Consensus 174 s-~~Gv--TG~~-~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~~ 216 (266)
T PRK13114 174 S-VAGI--TGMQ-QAAQASIEAAVARIKAAT-----DLPVAVGFGVRTPEQA 216 (266)
T ss_pred E-CCCC--CCCC-CCCHHHHHHHHHHHHHHC-----CCCEEEECCCCCHHHH
T ss_conf 4-4556--6776-566588999999999707-----9986998366989999
No 117
>PRK00208 thiG thiazole synthase; Reviewed
Probab=87.58 E-value=2.5 Score=22.72 Aligned_cols=74 Identities=24% Similarity=0.330 Sum_probs=32.5
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH-HHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 88776642244332433345579998732003301-22000234578216888750668999998754321258998168
Q gi|254780268|r 118 TAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFP-VLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVY 196 (443)
Q Consensus 118 ~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyP-viiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vl 196 (443)
.+-+.+.+-|.-|.|+... ++--++. .+++|-- ||-=.+-=|+|+|+ .|+..|+-..+++ +-+|+
T Consensus 115 ~Aae~Lv~eGF~VlpY~~~-D~v~akr-Le~~Gc~avMPlgsPIGSg~Gl---~n~~~l~~i~e~~---------~vPvI 180 (256)
T PRK00208 115 KAAEILVKEGFVVLPYCTD-DPVLAKR-LEEAGCAAVMPLGAPIGSGLGL---LNPYNLRIIIEQA---------DVPVI 180 (256)
T ss_pred HHHHHHHHCCCEEEEECCC-CHHHHHH-HHHCCCEEEEECCCCCCCCCCC---CCHHHHHHHHHHC---------CCCEE
T ss_conf 9999999889989786788-9899999-9974953452045643479887---9999999999867---------99889
Q ss_pred EEEEEEEEE
Q ss_conf 844342011
Q gi|254780268|r 197 IEKYLENPR 205 (443)
Q Consensus 197 vEk~i~~~r 205 (443)
|+-=|..|-
T Consensus 181 VDAGiG~pS 189 (256)
T PRK00208 181 VDAGIGTPS 189 (256)
T ss_pred EECCCCCHH
T ss_conf 857889766
No 118
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235 This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=87.09 E-value=1.6 Score=24.09 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=45.3
Q ss_pred HHHHHHHCCCEEEEECC-C-HHHCCCCHHHCCEEEECCCCCC-CCHHCCHHHHHHHHHHC--CCCEEE
Q ss_conf 99988880965999858-5-5771877675857999189985-30006989999999870--998994
Q gi|254780268|r 17 ILRACKELGIPTVAVHS-T-ADSGAMHVRLADESVCIGPPSS-KDSYLNIQQIVAACEVT--GADAIH 79 (443)
Q Consensus 17 iira~~elGi~tv~v~s-~-~D~~a~~~~~ADe~~~i~~~~~-~~sYldi~~ii~~a~~~--~~daih 79 (443)
+-.|+|+|||++-=|.. | ||....-++.=.+|+++..-.+ .-.-+|+++|-++|+++ ++=.|-
T Consensus 113 F~~TlkrlGIevrFvd~dd~pe~~~k~id~nTKAvf~EtIgNP~~~v~Die~~a~~Ah~~PhgvPliV 180 (434)
T TIGR01326 113 FKHTLKRLGIEVRFVDGDDDPEELEKAIDENTKAVFAETIGNPALNVPDIEAVAEVAHAHPHGVPLIV 180 (434)
T ss_pred HHHHHHHCCEEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 99955544814887278888789997606675189840123877676785899999986789834887
No 119
>pfam01820 Dala_Dala_lig_N D-ala D-ala ligase N-terminus. This family represents the N-terminal region of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4 which is thought to be involved in substrate binding. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=87.02 E-value=0.45 Score=28.00 Aligned_cols=86 Identities=17% Similarity=0.281 Sum_probs=47.2
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE----ECCCCHHHCCH
Q ss_conf 99999988880965999858557718776758579991899853000698999999987099899----45853131097
Q gi|254780268|r 14 ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI----HPGYGFLSENA 89 (443)
Q Consensus 14 a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai----hPGyGfLsEn~ 89 (443)
|.-+++++...+++.+.++-+.|..-.. ..+..-........ ............+...+|.+ |.++| ||.
T Consensus 21 a~~v~~~L~~~~~~v~~i~i~~~g~w~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~DvvF~~lHG~~G---EDG 94 (110)
T pfam01820 21 ARAVLKALDKEGYEVIPIDIDKDGRWLL--GDGDLGLLAPDDKL-DLEDKAELLAVLLAEKVDVVFPVLHGPFG---EDG 94 (110)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCEEE--CCCHHHHHCCCCCC-CCCCCCCCCCHHHCCCCCEEEEECCCCCC---CCC
T ss_conf 9999999976497599998748987873--46403332135310-01222222101112488999998889886---657
Q ss_pred HHHHHHHHCCCEEECC
Q ss_conf 6668898459216268
Q gi|254780268|r 90 KFAEILEDHHIKFIGP 105 (443)
Q Consensus 90 ~fa~~~e~~Gi~fIGP 105 (443)
.++..|+..|++|+|+
T Consensus 95 ~iQglle~~~iPytGs 110 (110)
T pfam01820 95 TIQGLLELLGIPYVGS 110 (110)
T ss_pred HHHHHHHHCCCCCCCC
T ss_conf 8999999819998899
No 120
>TIGR01435 glu_cys_lig_rel putative glutamate--cysteine ligase/putative amino acid ligase; InterPro: IPR006335 This entry represents a family with an N-terminal region similar to proteobacterial glutamate-cysteine ligase (gamma-glutamylcysteine synthetase). The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria, and (shown by PSI-BLAST) to D-alanine-D-alanine ligases. Cyanophycin is a storage molecule composed of arginine, aspartic acid, and some glutamic acid. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced , and in proteobacterium Pasteurella multocida.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process.
Probab=86.81 E-value=0.74 Score=26.47 Aligned_cols=98 Identities=22% Similarity=0.282 Sum_probs=69.2
Q ss_pred HHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHH-HHHCCCCCCCCEEEE----EEECHHHHHHHHHHHHH
Q ss_conf 8721899887766422443324333455799987320033012-200023457821688----87506689999987543
Q gi|254780268|r 111 KIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPV-LVKASAGGGGRGMRI----AYSENDLSEAIDQARSE 185 (443)
Q Consensus 111 ~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPv-iiKp~~gGGG~Gi~v----v~~~~el~~a~~~a~~e 185 (443)
-.+.+|...|.++.++|..++-+....+...+.+....+.-.. ++||.....|.|..+ +.+.+++.+++..+.++
T Consensus 486 ~~~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~g~~~~~~~~~~~~d~~~~~~~~~~~ 565 (754)
T TIGR01435 486 LLLENKVVTKKVLAEAGFNVPGGDEFSSLALALEAFLLFENKAFVVKPKSTNYGLGTTIFKEGFTNLEDFAEALRNAFKE 565 (754)
T ss_pred EEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 00011257788887604557665304678888888876413300332354444331234430221056789999876420
Q ss_pred HHCCCCCCCEEEEEEEEEEEECCEEEEEEC
Q ss_conf 212589981688443420110331577734
Q gi|254780268|r 186 ALAAFGNDAVYIEKYLENPRHIEVQIFGDG 215 (443)
Q Consensus 186 a~~~fgd~~vlvEk~i~~~rhiEvqVl~D~ 215 (443)
|..+++++++.|. +...-+++|.
T Consensus 566 ------d~~~~~~~~~~g~-~~~~~~~~~~ 588 (754)
T TIGR01435 566 ------DSEVLVEEFLPGT-EYRFFLLGDE 588 (754)
T ss_pred ------HHHHHHHHHCCCC-CEEEEEECCH
T ss_conf ------0134333311576-2167763541
No 121
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.76 E-value=2.2 Score=23.13 Aligned_cols=36 Identities=11% Similarity=0.207 Sum_probs=14.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHCEECCCCCCHHHH
Q ss_conf 899995599899999999876540882637788899
Q gi|254780268|r 383 AKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLF 418 (443)
Q Consensus 383 aKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv~TN~~~l 418 (443)
.++++.++||.++.+-+..--++..=+=+.+.+..=
T Consensus 492 l~I~aRar~~~~~~~L~~~Ga~~vv~Et~essL~l~ 527 (602)
T PRK03659 492 LHILARARGRVEAHELLQAGVTQFSRETFSSALELG 527 (602)
T ss_pred CEEEEEECCHHHHHHHHHCCCCEEECCHHHHHHHHH
T ss_conf 969998697899999997899978662789999999
No 122
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=86.68 E-value=2.8 Score=22.37 Aligned_cols=31 Identities=10% Similarity=0.138 Sum_probs=20.1
Q ss_pred EEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 688875066899999875432125899816884
Q gi|254780268|r 166 MRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 166 i~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
...+.+++++.+.+++|.+.|.+. .++|+|+
T Consensus 130 ~~~v~~~~~~~~~i~rA~~~A~~~--rGPV~i~ 160 (589)
T PRK07525 130 QEEVRDPSRMAEVLNRVFDKAKRE--SGPAQIN 160 (589)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHC--CCCEEEE
T ss_conf 899388345699999999999838--9986996
No 123
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=86.37 E-value=2.9 Score=22.26 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=47.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf 06866447099999999888809659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY 82 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy 82 (443)
+|+.|-+-|-.+....+.+.++|.+.|+| ||.+ -.+.-+ .=+|++++++...+.+--.-+||-
T Consensus 32 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~v-sD~~----------G~i~~~------~Gld~~~l~~~~~~~~~~~~~~~~ 94 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAV-SDSD----------GTIYNP------DGLDVPALLAYKKEHGSVLGFPGA 94 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE-ECCC----------CEEECC------CCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999898899999999999879959999-8478----------738888------889999999999965980267887
Q ss_pred CHHH
Q ss_conf 3131
Q gi|254780268|r 83 GFLS 86 (443)
Q Consensus 83 GfLs 86 (443)
-+++
T Consensus 95 ~~~~ 98 (227)
T cd01076 95 ERIT 98 (227)
T ss_pred CCCC
T ss_conf 5389
No 124
>KOG1447 consensus
Probab=85.83 E-value=3.1 Score=22.08 Aligned_cols=103 Identities=23% Similarity=0.237 Sum_probs=63.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH-HHHHCC--CCCCCCEE---------EEEEECHHHHHHHHHHH
Q ss_conf 9988776642244332433345579998732003301-220002--34578216---------88875066899999875
Q gi|254780268|r 116 KITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFP-VLVKAS--AGGGGRGM---------RIAYSENDLSEAIDQAR 183 (443)
Q Consensus 116 K~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyP-viiKp~--~gGGG~Gi---------~vv~~~~el~~a~~~a~ 183 (443)
...+|+++.+.|+.+-.+....+..++.+.+.+++-| .++|+- .||-|+|. .+-.+++...++.++..
T Consensus 24 EfQSK~~l~k~Gv~vQ~F~Va~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~qMI 103 (412)
T KOG1447 24 EFQSKEILSKNGVRVQRFFVADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAKQMI 103 (412)
T ss_pred HHHHHHHHHHCCEEEEEEEEECCCHHHHHHHHHCCCCCEEEEEEEEECCCCCCEECCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 76667889864905899997067077899998549922377644310676554244776540687448749999999987
Q ss_pred HH--HHCCCCCCC-----EEEEEEEEEEEECCEEEEEECCCC
Q ss_conf 43--212589981-----688443420110331577734787
Q gi|254780268|r 184 SE--ALAAFGNDA-----VYIEKYLENPRHIEVQIFGDGMGN 218 (443)
Q Consensus 184 ~e--a~~~fgd~~-----vlvEk~i~~~rhiEvqVl~D~~g~ 218 (443)
.+ +.+.-+... |||-+.++-.||--.-++-|+.-|
T Consensus 104 G~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~N 145 (412)
T KOG1447 104 GYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECN 145 (412)
T ss_pred HHHHHHCCCCCCCEEEEEEEEEECCCCCHHEEEEEEECCCCC
T ss_conf 453320448855626555887300361124001435514568
No 125
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=85.75 E-value=3.1 Score=22.06 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=9.1
Q ss_pred HHHHHHHHHHCCCCEEE
Q ss_conf 89999999870998994
Q gi|254780268|r 63 IQQIVAACEVTGADAIH 79 (443)
Q Consensus 63 i~~ii~~a~~~~~daih 79 (443)
.++|.++.++.+.++|.
T Consensus 74 ~~aI~~~~~~~~p~~I~ 90 (435)
T cd01974 74 IDGLKNAYAVYKPDMIA 90 (435)
T ss_pred HHHHHHHHHHCCCCEEE
T ss_conf 99999999851998899
No 126
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=85.61 E-value=1.1 Score=25.17 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=16.3
Q ss_pred HHHHHHHHHCCCCCCEEEEEE
Q ss_conf 999988651543410245897
Q gi|254780268|r 256 TCVKAMKKIDYRGAGTIEFLY 276 (443)
Q Consensus 256 ~A~~~~~~~g~~g~~tvEFl~ 276 (443)
.-.+..+..||.|+-++||.=
T Consensus 222 ~i~~aL~~~gY~G~i~~E~~p 242 (254)
T TIGR03234 222 FLFAVLDRLGYDGWVGLEYKP 242 (254)
T ss_pred HHHHHHHHHCCCCEEEEEEEE
T ss_conf 999999983999559999866
No 127
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=85.37 E-value=3.2 Score=21.93 Aligned_cols=75 Identities=21% Similarity=0.333 Sum_probs=33.0
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHH-HHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 887766422443324333455799987320033012-2000234578216888750668999998754321258998168
Q gi|254780268|r 118 TAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPV-LVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVY 196 (443)
Q Consensus 118 ~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPv-iiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vl 196 (443)
++-+.+.+-|.-|.|+... ++.-++. .+++|--. |-=.+-=|+|+|+ .|+..++-..+++ +-+|+
T Consensus 114 ~Aae~Lv~~GF~VlpY~~~-D~v~akr-Le~~Gc~avMPlgsPIGSg~Gl---~n~~~l~~i~e~~---------~vPvI 179 (248)
T cd04728 114 KAAEILVKEGFTVLPYCTD-DPVLAKR-LEDAGCAAVMPLGSPIGSGQGL---LNPYNLRIIIERA---------DVPVI 179 (248)
T ss_pred HHHHHHHHCCCEEEEECCC-CHHHHHH-HHHCCCEEEEECCCCCCCCCCC---CCHHHHHHHHHHC---------CCCEE
T ss_conf 9999999889989786788-9999999-9974953452045643479887---9999999999847---------99889
Q ss_pred EEEEEEEEEE
Q ss_conf 8443420110
Q gi|254780268|r 197 IEKYLENPRH 206 (443)
Q Consensus 197 vEk~i~~~rh 206 (443)
|+-=|..|-|
T Consensus 180 VDAGiG~pS~ 189 (248)
T cd04728 180 VDAGIGTPSD 189 (248)
T ss_pred EECCCCCHHH
T ss_conf 8479997567
No 128
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=84.91 E-value=3.4 Score=21.79 Aligned_cols=72 Identities=25% Similarity=0.318 Sum_probs=28.8
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHH-HHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 87766422443324333455799987320033012-20002345782168887506689999987543212589981688
Q gi|254780268|r 119 AKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPV-LVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYI 197 (443)
Q Consensus 119 ~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPv-iiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlv 197 (443)
+-+.+.+-|.-|.|+... ++.-++. .+++|--. |-=.+-=|+|+|+ .|+..|+-..+++ +-+|+|
T Consensus 129 Aae~Lv~eGF~VlpY~~d-D~v~akr-Le~~Gc~avMPlgsPIGSg~Gl---~n~~~l~~i~e~~---------~vPvIV 194 (267)
T CHL00162 129 AAEFLVRKGFTVLPYINA-DPVLAKQ-LEDIGCATVMPLGSPIGSGQGL---QNLLNLQIIIENA---------KIPVII 194 (267)
T ss_pred HHHHHHHCCCEEEEECCC-CHHHHHH-HHHCCCEEEEECCCCCCCCCCC---CCHHHHHHHHHCC---------CCCEEE
T ss_conf 999999789999895489-9899999-9865986886345512368875---8999999999648---------998899
Q ss_pred EEEEEEE
Q ss_conf 4434201
Q gi|254780268|r 198 EKYLENP 204 (443)
Q Consensus 198 Ek~i~~~ 204 (443)
+-=|..|
T Consensus 195 DAGiG~p 201 (267)
T CHL00162 195 DAGIGTP 201 (267)
T ss_pred ECCCCCH
T ss_conf 6898967
No 129
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=84.52 E-value=3.5 Score=21.67 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=14.1
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCHHHHHC
Q ss_conf 33243334557999873200330122000
Q gi|254780268|r 129 PVVPGSGEVYPHTAMPIAKEIGFPVLVKA 157 (443)
Q Consensus 129 P~~p~~~~~~~~ea~~~a~~iGyPviiKp 157 (443)
|.+-+....+-++..+.+.+.+-|+.|++
T Consensus 180 PLlyaAt~~N~~~m~~LA~~~~~Pl~V~a 208 (454)
T PRK04165 180 PLLYAATKDNWKEMAELAKEYNCPLVVSA 208 (454)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 75522789889999999987498479977
No 130
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=83.93 E-value=3.7 Score=21.50 Aligned_cols=109 Identities=23% Similarity=0.284 Sum_probs=56.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEC-CCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 8664470999999998888096599985-855771877675857999189985300069899999998709989945853
Q gi|254780268|r 5 ILIANRGEIALRILRACKELGIPTVAVH-STADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG 83 (443)
Q Consensus 5 iLianrGeia~riira~~elGi~tv~v~-s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG 83 (443)
|+-.+.-+-|+++++++.+-|++.+=|- +.++ .-..|+..++...+.+ -|-|
T Consensus 13 V~r~~~~~~a~~~~~al~~~Gi~~iEiTl~t~~--------------------------a~~~I~~l~~~~p~~~-iGaG 65 (196)
T pfam01081 13 VIVIKDKEDALPLAEALAAGGIRVLEVTLRTPC--------------------------ALDAIRLLRKNRPDAL-VGAG 65 (196)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECCCHH--------------------------HHHHHHHHHHHCCCCE-EEEE
T ss_conf 997799999999999999879988999479827--------------------------9999999996499967-9998
Q ss_pred HHHCCHHHHHHHHHCCCEEEC-CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf 131097666889845921626-898999872189988776642244332433345579998732003301
Q gi|254780268|r 84 FLSENAKFAEILEDHHIKFIG-PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFP 152 (443)
Q Consensus 84 fLsEn~~fa~~~e~~Gi~fIG-Ps~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyP 152 (443)
=. -+.+-++...++|..|+= |.. |+.. -+.+.+.|+|.+||. .++.|+..+- +.|+.
T Consensus 66 TV-~~~e~~~~a~~aGA~FivSP~~-------~~~v-~~~a~~~~i~~iPGv--~TpsEi~~A~-~~G~~ 123 (196)
T pfam01081 66 TV-LNAQQLAEAAEAGAQFVVSPGL-------TADL-LKHAVDVKIPLIPGV--STPSEIMLGL-DLGLT 123 (196)
T ss_pred EC-CCHHHHHHHHHCCCCEEECCCC-------HHHH-HHHHHHCCCCEECCC--CCHHHHHHHH-HCCCC
T ss_conf 37-6899999999749999997876-------3999-999997399663785--9999999999-87999
No 131
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=83.85 E-value=3.7 Score=21.48 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=13.5
Q ss_pred HHCCHHHHHHHHHHCCCCEE
Q ss_conf 00698999999987099899
Q gi|254780268|r 59 SYLNIQQIVAACEVTGADAI 78 (443)
Q Consensus 59 sYldi~~ii~~a~~~~~dai 78 (443)
-|-+.+.+.++...+|++-|
T Consensus 93 ky~s~~~~~~ai~aSgaeiv 112 (327)
T PRK11840 93 KYKDFEETAAAVEASGAEIV 112 (327)
T ss_pred CCCCHHHHHHHHHHHCCCEE
T ss_conf 99999999999998589769
No 132
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.70 E-value=2.8 Score=22.38 Aligned_cols=18 Identities=6% Similarity=0.174 Sum_probs=7.5
Q ss_pred EEEEECCCHHHHHHHHHH
Q ss_conf 999955998999999998
Q gi|254780268|r 384 KLIVHGKNRKECMMRLNR 401 (443)
Q Consensus 384 KiI~~g~~R~~Ai~~l~~ 401 (443)
++++.++||.++.+-+..
T Consensus 492 ~IiaRard~~~~~~L~~~ 509 (615)
T PRK03562 492 QIIARARDVDHYIRLRQA 509 (615)
T ss_pred EEEEEECCHHHHHHHHHC
T ss_conf 699983977889999978
No 133
>PRK00509 argininosuccinate synthase; Provisional
Probab=83.56 E-value=3.8 Score=21.40 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=24.2
Q ss_pred CCEEEEEECCCHHHHH-HHHHHHHC-CCEEEEECCC
Q ss_conf 9706866447099999-99988880-9659998585
Q gi|254780268|r 1 MISKILIANRGEIALR-ILRACKEL-GIPTVAVHST 34 (443)
Q Consensus 1 m~~~iLianrGeia~r-iira~~el-Gi~tv~v~s~ 34 (443)
|+|||..|=.|=.-.- +++=++|. |+++|++..|
T Consensus 1 m~kKVvLAySGGLDTSv~l~wL~e~yg~eVia~~~d 36 (398)
T PRK00509 1 MVKKVVLAYSGGLDTSVIIKWLKEEYGCEVVAFTAD 36 (398)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 985499990898459999999987539889999997
No 134
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=83.31 E-value=3.9 Score=21.33 Aligned_cols=56 Identities=16% Similarity=0.348 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEE--EECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 89999999999999886515434102458--972883499822765433201678863
Q gi|254780268|r 246 SAQDRTEIGETCVKAMKKIDYRGAGTIEF--LYENGQFYFIEMNTRLQVEHPVTEAIT 301 (443)
Q Consensus 246 ~~~~~~~i~~~A~~~~~~~g~~g~~tvEF--l~~~~~~yflEvN~Rlqveh~vte~~t 301 (443)
+.++..++.+...++++..|+.-.--=|| |++++++|+|.+--=+...||-.++.-
T Consensus 119 ~~~~~~~il~~~~~l~~~~glVHgDLSEyNILv~~~~~~iID~pQaV~~~hp~A~e~L 176 (190)
T cd05145 119 AEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYHDGKPYIIDVSQAVELDHPNALEFL 176 (190)
T ss_pred HHHHHHHHHHHHHHHHHHCCEEECCCCHHHEEEECCCEEEEECCCCCCCCCCCHHHHH
T ss_conf 9999999999999999974921036415533897894799955761257899889999
No 135
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=82.85 E-value=4.1 Score=21.21 Aligned_cols=130 Identities=19% Similarity=0.266 Sum_probs=73.5
Q ss_pred HHHHHHHHHHCCCCEEE--CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCC-CCCCCCCH
Q ss_conf 89999999870998994--5853131097666889845921626898999872189988776642244332-43334557
Q gi|254780268|r 63 IQQIVAACEVTGADAIH--PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVV-PGSGEVYP 139 (443)
Q Consensus 63 i~~ii~~a~~~~~daih--PGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~-p~~~~~~~ 139 (443)
.+.|++.-+++|++-|+ ||. ....|.+.+++.||.||+...|......=-..+ ++-.+.||-.+ .|-...+.
T Consensus 16 a~~i~~~L~~~GV~~vFGipG~----~~~~l~~~~~~~~i~~v~~rhE~~A~~mAdgya-r~tg~~gv~~~t~GPG~~N~ 90 (572)
T PRK09259 16 FHLVIDALKLNGIDTIYGVVGI----PITDLARLAQAEGIRYIGFRHEQSAGNAAAAAG-FLTQKPGICLTVSAPGFLNG 90 (572)
T ss_pred HHHHHHHHHHCCCCEEEECCCH----HHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHH-HHHCCCEEEEEECCHHHHHH
T ss_conf 9999999998799989968886----279999974538980982096899999999999-98689789998057189999
Q ss_pred HHHHHHHHCCCCHHHHHCCCC-----CCC-----------------CEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 999873200330122000234-----578-----------------2168887506689999987543212589981688
Q gi|254780268|r 140 HTAMPIAKEIGFPVLVKASAG-----GGG-----------------RGMRIAYSENDLSEAIDQARSEALAAFGNDAVYI 197 (443)
Q Consensus 140 ~ea~~~a~~iGyPviiKp~~g-----GGG-----------------~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlv 197 (443)
-..+.-|..=+.|+++=.-.. +-+ |-...+.+++++...+++|.+.+.+. .-++|++
T Consensus 91 ~tgl~~A~~~~~Pvl~IsG~~~~~~~~~~~g~~q~~dq~~~~~p~tk~s~~v~~~~~i~~~v~~A~~~A~~~-~pGPV~L 169 (572)
T PRK09259 91 LTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFAKAAFRVNQAQDIGIAVARAIRTAVSG-RPGGVYL 169 (572)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEECHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHC-CCCCEEE
T ss_conf 999999983399989993737756556678874112187653032102354278667499999999999757-9971799
Q ss_pred E
Q ss_conf 4
Q gi|254780268|r 198 E 198 (443)
Q Consensus 198 E 198 (443)
+
T Consensus 170 ~ 170 (572)
T PRK09259 170 D 170 (572)
T ss_pred E
T ss_conf 5
No 136
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=82.85 E-value=1.6 Score=24.18 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHCCCCEE
Q ss_conf 698999999987099899
Q gi|254780268|r 61 LNIQQIVAACEVTGADAI 78 (443)
Q Consensus 61 ldi~~ii~~a~~~~~dai 78 (443)
++.+.-++.|++.|-|.|
T Consensus 21 ~sw~e~~~~ak~~Gfd~i 38 (283)
T PRK13209 21 ECWLEKLRIAKTAGFDFV 38 (283)
T ss_pred CCHHHHHHHHHHCCCCEE
T ss_conf 999999999998599879
No 137
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=82.40 E-value=4.2 Score=21.09 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=7.8
Q ss_pred HCHHHHHHHHHHCCCCC
Q ss_conf 18998877664224433
Q gi|254780268|r 114 GDKITAKKTAQQLGIPV 130 (443)
Q Consensus 114 gDK~~~k~~a~~~GVP~ 130 (443)
+|-...|+++++.|+.+
T Consensus 173 ~d~~eik~ll~~~Gi~v 189 (406)
T cd01967 173 GDAWVIKPLLEELGIRV 189 (406)
T ss_pred HHHHHHHHHHHHCCCCE
T ss_conf 13999999999859926
No 138
>PRK08329 threonine synthase; Validated
Probab=82.37 E-value=4.2 Score=21.09 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=13.7
Q ss_pred HHCCCEEECCCHHHHHHHHCHHHHHHHHHHCC
Q ss_conf 84592162689899987218998877664224
Q gi|254780268|r 96 EDHHIKFIGPSSEHIKIMGDKITAKKTAQQLG 127 (443)
Q Consensus 96 e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~G 127 (443)
++.|+.|+.|.-.-....|-|-.+.+++++++
T Consensus 172 ~~~g~~~~~~~~np~~ieGqkTia~Ei~eql~ 203 (348)
T PRK08329 172 RRNNIPYVSHWLNPYFLEGTKTIAYEIYEQVG 203 (348)
T ss_pred HHCCCEECCCCCCHHHHHCCCCHHHHHHHHCC
T ss_conf 98098753765674665146627999998719
No 139
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=82.30 E-value=4.3 Score=21.07 Aligned_cols=101 Identities=27% Similarity=0.392 Sum_probs=50.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEE-CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 866447099999999888809659998-5855771877675857999189985300069899999998709989945853
Q gi|254780268|r 5 ILIANRGEIALRILRACKELGIPTVAV-HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG 83 (443)
Q Consensus 5 iLianrGeia~riira~~elGi~tv~v-~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG 83 (443)
||-...-+-|..+++++.+-|++.+-| .+.++. .+ .|+..++...|.+ -|-|
T Consensus 9 Vlr~~~~~~a~~~~~al~~~Gi~~iEitl~t~~a-------------------------~~-~i~~l~~~~~~~~-iGaG 61 (190)
T cd00452 9 VLRGDDAEDALALAEALIEGGIRAIEITLRTPGA-------------------------LE-AIRALRKEFPEAL-IGAG 61 (190)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHH-------------------------HH-HHHHHHHHCCCCE-EEEC
T ss_conf 9977999999999999998699889996788029-------------------------99-9999998689808-9652
Q ss_pred HHHCCHHHHHHHHHCCCEEE-CCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 13109766688984592162-689--899987218998877664224433243334557999873
Q gi|254780268|r 84 FLSENAKFAEILEDHHIKFI-GPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPI 145 (443)
Q Consensus 84 fLsEn~~fa~~~e~~Gi~fI-GPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~ 145 (443)
=. -+.+-++.+.++|..|+ -|. ++.+ +.+.+.++|.+||.. ++.|+..+
T Consensus 62 TV-~~~~~~~~a~~aGa~FivsP~~~~~v~----------~~a~~~~~~~iPGv~--TpsEi~~A 113 (190)
T cd00452 62 TV-LTPEQADAAIAAGAQFIVSPGLDPEVV----------KAANRAGIPLLPGVA--TPTEIMQA 113 (190)
T ss_pred CC-CCHHHHHHHHHCCCCEEECCCCCHHHH----------HHHHHCCCCEECCCC--CHHHHHHH
T ss_conf 34-779999999985998997377999999----------999982996657879--99999999
No 140
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase; InterPro: IPR006406 This family represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primarily proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is IPR006405 from INTERPRO. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase. ; GO: 0004516 nicotinate phosphoribosyltransferase activity, 0019357 nicotinate nucleotide biosynthetic process.
Probab=81.63 E-value=1.4 Score=24.53 Aligned_cols=89 Identities=21% Similarity=0.190 Sum_probs=59.3
Q ss_pred CHHHHHHHCCCCCCCC--CCC--CCC---CEEEEECC---CCCCEEEECC--CCCCCEECCCC-----CCCEEEEEEECC
Q ss_conf 0124533024566221--111--244---21588668---9984467776--02387707776-----843389999559
Q gi|254780268|r 328 SGHAIECRINAEDPEN--FIP--NPG---EITYFHAP---GGLGIRMDSA--SYQGYTVPSYY-----DSLIAKLIVHGK 390 (443)
Q Consensus 328 ~g~aie~Ri~aEdp~~--f~P--s~G---~i~~~~~p---~~~gvRvDt~--~~~G~~i~~~y-----DsmlaKiI~~g~ 390 (443)
+-.|+|+=|+.=+-+| ..| +.| =+..|+.+ .=.|||-||| +..|+.+..+| ||-+.|+|+.+.
T Consensus 256 q~~Ale~W~~~y~g~nLG~ALTDt~t~DaFLrdF~~~~A~~y~GlRHDSGDP~~wg~K~~~HY~~L~iDP~f~K~~~FSD 335 (430)
T TIGR01514 256 QKVALESWINEYDGDNLGIALTDTLTTDAFLRDFSKKFAKLYDGLRHDSGDPVEWGEKAIAHYEKLGIDPKFSKLLIFSD 335 (430)
T ss_pred HHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 89999988865389843030341000014631168546766177620478851687799986887167860478989726
Q ss_pred --CHHHHHHHHHHHHH-HCEE-CCCCCCHH
Q ss_conf --98999999998765-4088-26377888
Q gi|254780268|r 391 --NRKECMMRLNRALN-EIII-DGIKTTIP 416 (443)
Q Consensus 391 --~R~~Ai~~l~~aL~-~~~I-~Gv~TN~~ 416 (443)
|-+.|+.--..+=. .+++ -||-||+.
T Consensus 336 ~Ld~~~A~el~~~f~~nR~k~sFGIGTnLT 365 (430)
T TIGR01514 336 SLDVEKAIELSKYFKGNRVKASFGIGTNLT 365 (430)
T ss_pred CCCHHHHHHHHHHHHHCCEEEEECCCCHHH
T ss_conf 998889999999873487687407620112
No 141
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.00 E-value=4.7 Score=20.76 Aligned_cols=124 Identities=22% Similarity=0.252 Sum_probs=62.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCHHHCCCCHHHCCEEEECCCCCCC---CHH-CCHHHHHHHHH---H
Q ss_conf 706866447099999999888809--65999858557718776758579991899853---000-69899999998---7
Q gi|254780268|r 2 ISKILIANRGEIALRILRACKELG--IPTVAVHSTADSGAMHVRLADESVCIGPPSSK---DSY-LNIQQIVAACE---V 72 (443)
Q Consensus 2 ~~~iLianrGeia~riira~~elG--i~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~---~sY-ldi~~ii~~a~---~ 72 (443)
|-||+|..+|+-.-|++.+...-+ -..|.|+..|+....++..+++. |++.+.. -+| |.-|.++.+++ .
T Consensus 1 ~mki~vlt~g~yG~R~~~nl~~~~f~~~~v~v~~~Pe~~~~fie~P~~~--Lp~~~e~Di~va~~lHPDl~~~L~e~~~~ 78 (224)
T COG1810 1 MMKILVLTDGEYGKRAVNNLACKGFKNQFVAVKEYPEELPDFIEEPEDL--LPKLPEADIVVAYGLHPDLLLALPEKAAE 78 (224)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCHHHH--CCCCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 9289999606204899876765215531589873663253001277976--67888877899951485078999999985
Q ss_pred CCCCEEE-C---CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCC-CCCCH-HHHHHHH
Q ss_conf 0998994-5---853131097666889845921626898999872189988776642244332433-34557-9998732
Q gi|254780268|r 73 TGADAIH-P---GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGS-GEVYP-HTAMPIA 146 (443)
Q Consensus 73 ~~~daih-P---GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~-~~~~~-~ea~~~a 146 (443)
.+..+|. | +=|+. -++.+.|++.|+.|.-|. |+- ...+. ....+|+
T Consensus 79 ~~~~alIvp~~~~~g~r---kqL~~~~~~~g~e~~~p~-------------------------p~C~Le~~~~p~i~~F~ 130 (224)
T COG1810 79 GGVKALIVPAEPPEGLR---KQLKEFCEELGVEFEAPE-------------------------PFCSLEPNENPHIDEFA 130 (224)
T ss_pred CCCCEEEEECCCCHHHH---HHHHHHHHHCCEEEECCC-------------------------CCCCCCCCCCHHHHHHH
T ss_conf 79617998457973489---999987422360553687-------------------------65567888885799999
Q ss_pred HCCCCHHHH
Q ss_conf 003301220
Q gi|254780268|r 147 KEIGFPVLV 155 (443)
Q Consensus 147 ~~iGyPvii 155 (443)
+..|.|.+=
T Consensus 131 e~FG~P~ve 139 (224)
T COG1810 131 ERFGKPEVE 139 (224)
T ss_pred HHCCCCEEE
T ss_conf 971995599
No 142
>PRK05638 threonine synthase; Validated
Probab=80.35 E-value=4.9 Score=20.61 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=14.8
Q ss_pred HCCCEEECCCHHHHHHHHCHHHHHHHHHHCC
Q ss_conf 4592162689899987218998877664224
Q gi|254780268|r 97 DHHIKFIGPSSEHIKIMGDKITAKKTAQQLG 127 (443)
Q Consensus 97 ~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~G 127 (443)
+.|+-++.|...-.+..|-|..+.++++++|
T Consensus 182 ~~g~~~~~~~~nP~~iEG~KTiayEI~EQlg 212 (443)
T PRK05638 182 LNGLYNVTPEDNIIGLEGQKTIAFELWEELN 212 (443)
T ss_pred HCCEEEECCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 5694882587772243212358999999759
No 143
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=80.06 E-value=5 Score=20.55 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=46.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEE
Q ss_conf 6866447099999999888809659998585577187767585799918998530006989999999870998994
Q gi|254780268|r 4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH 79 (443)
Q Consensus 4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daih 79 (443)
||+|++-|++...+.|.+.+.|...++|..+++....--..-|-.+..|.+. |.+.+ +-|.-..+|.+.
T Consensus 2 ~IiI~GaG~vG~~La~~Ls~e~~dV~vID~d~~~~~~~~~~lDv~~i~Gd~~------~~~~L-~~Agi~~ad~~I 70 (455)
T PRK09496 2 KIIILGAGQVGGTLAERLVGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGS------HPDVL-REAGAEDADMLI 70 (455)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCEEEEEECCC------CHHHH-HHCCCCCCCEEE
T ss_conf 7999998889999999998689979999899999999886258689996689------99999-965998699999
No 144
>PRK08904 consensus
Probab=79.70 E-value=5.2 Score=20.47 Aligned_cols=120 Identities=26% Similarity=0.336 Sum_probs=63.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEC-CCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 8664470999999998888096599985-855771877675857999189985300069899999998709989945853
Q gi|254780268|r 5 ILIANRGEIALRILRACKELGIPTVAVH-STADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG 83 (443)
Q Consensus 5 iLianrGeia~riira~~elGi~tv~v~-s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG 83 (443)
|+-.+.-+-|+.+++++.+-|++++=|- +.++ + .+.|-. .++...|.+ -|-|
T Consensus 15 Vir~~~~~~a~~~a~al~~~Gi~~iEiTlrtp~----------------------a---~~~i~~-l~~~~p~~~-vGaG 67 (207)
T PRK08904 15 VMAIDDLSTAVDLSRALVEGGIPTLEITLRTPV----------------------G---LDAIRL-IAKEVPNAI-VGAG 67 (207)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECCCCH----------------------H---HHHHHH-HHHHCCCCE-EEEE
T ss_conf 997699999999999999879988999579913----------------------9---999999-998689876-8553
Q ss_pred HHHCCHHHHHHHHHCCCEEEC-CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHH-HHCCCCC
Q ss_conf 131097666889845921626-89899987218998877664224433243334557999873200330122-0002345
Q gi|254780268|r 84 FLSENAKFAEILEDHHIKFIG-PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVL-VKASAGG 161 (443)
Q Consensus 84 fLsEn~~fa~~~e~~Gi~fIG-Ps~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPvi-iKp~~gG 161 (443)
=. -+.+-++...++|..|+= |.. |... -+.+.+.|+|.+||. .++.|+..+. +.|+.++ +=|+...
T Consensus 68 TV-l~~e~~~~a~~aGA~FiVSP~~-------~~~v-~~~a~~~~i~~iPGv--~TpsEi~~A~-~~G~~~vK~FPA~~~ 135 (207)
T PRK08904 68 TV-TNPEQLKAVEDAGAVFAISPGL-------HESL-AKAGHNSGIPLIPGV--ATPGEIQLAL-EHGIDTLKLFPAEVV 135 (207)
T ss_pred EC-CCHHHHHHHHHCCCCEEECCCC-------CHHH-HHHHHHCCCCEECCC--CCHHHHHHHH-HCCCCEEEECCCHHC
T ss_conf 13-6899999999849999984899-------8999-999998399765786--9999999999-879998997762220
Q ss_pred CC
Q ss_conf 78
Q gi|254780268|r 162 GG 163 (443)
Q Consensus 162 GG 163 (443)
||
T Consensus 136 GG 137 (207)
T PRK08904 136 GG 137 (207)
T ss_pred CC
T ss_conf 88
No 145
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=79.60 E-value=5.2 Score=20.45 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=40.0
Q ss_pred EEEEEECCCHHHHHHHHHHHH---CCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEE
Q ss_conf 068664470999999998888---09659998585577187767585799918998530006989999999870998994
Q gi|254780268|r 3 SKILIANRGEIALRILRACKE---LGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH 79 (443)
Q Consensus 3 ~~iLianrGeia~riira~~e---lGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daih 79 (443)
+|+||.+.|+.+.++++..++ +|++.+.+.++....... .. +.+ .--+.+++.++++++++|-|.
T Consensus 126 rrvlIIG~g~~~~~l~~~l~~~~~~g~~vvG~~dd~~~~~~~--~~-------~~p---~lg~~~~l~~~i~~~~ideVi 193 (445)
T TIGR03025 126 RRVLIVGTGELAEELAAALSRNPDLGYRVVGFVDDRPEDRVE--VA-------GLP---VLGKLDDLVELVRAHRVDEVI 193 (445)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC--CC-------CCC---CCCCHHHHHHHHHHCCCCEEE
T ss_conf 239999084899999999982846884899997787544455--67-------886---018899999999976998899
Q ss_pred CCCCHHHCC---HHHHHHHHHCCCEE
Q ss_conf 585313109---76668898459216
Q gi|254780268|r 80 PGYGFLSEN---AKFAEILEDHHIKF 102 (443)
Q Consensus 80 PGyGfLsEn---~~fa~~~e~~Gi~f 102 (443)
=-- ..+++ .+....|+..|+.+
T Consensus 194 Ia~-p~~~~~~~~~~l~~~~~~~v~v 218 (445)
T TIGR03025 194 IAL-PLSEEARILELLLQLSDLGVDV 218 (445)
T ss_pred EEC-CCCCHHHHHHHHHHHHHCCCEE
T ss_conf 965-8677689999999987559789
No 146
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=79.59 E-value=5.2 Score=20.44 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 99999886515434102458972
Q gi|254780268|r 255 ETCVKAMKKIDYRGAGTIEFLYE 277 (443)
Q Consensus 255 ~~A~~~~~~~g~~g~~tvEFl~~ 277 (443)
....+..+.+||.|+-..||.=.
T Consensus 222 ~~i~~~l~~~gY~G~ig~Ey~P~ 244 (258)
T PRK09997 222 DYLFNVIENSDYNGWVGCEYKPQ 244 (258)
T ss_pred HHHHHHHHHHCCCCEEEEEEECC
T ss_conf 99999999829996688987229
No 147
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.55 E-value=5.2 Score=20.44 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=20.9
Q ss_pred CEEEEEECCC------HHHHHHHHHHHHCCCEEEEEC
Q ss_conf 7068664470------999999998888096599985
Q gi|254780268|r 2 ISKILIANRG------EIALRILRACKELGIPTVAVH 32 (443)
Q Consensus 2 ~~~iLianrG------eia~riira~~elGi~tv~v~ 32 (443)
+|||||..|- +.|.++.+-+++-|++++...
T Consensus 3 lk~VlIV~k~~~~~A~~~a~~l~~~L~~rGi~v~~~~ 39 (304)
T PRK02645 3 LKLVIIAYKAGSPQAKEAAERCAKQLEARGIKVLMGP 39 (304)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 4599999858999999999999999998889999844
No 148
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=79.54 E-value=3.1 Score=22.04 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=36.5
Q ss_pred HHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf 220002345782168887506689999987543212589981688443420
Q gi|254780268|r 153 VLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLEN 203 (443)
Q Consensus 153 viiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~ 203 (443)
=..|-+.+-|.+|. .|.+++||.+++++|+..... .+.+++||=-++.
T Consensus 148 D~~kiAea~G~~g~-rV~~~~eL~~Al~~A~~~~~~--~~~P~lIeviidr 195 (202)
T cd02006 148 DHVKVAEGLGCKAI-RVTKPEELAAAFEQAKKLMAE--HRVPVVVEAILER 195 (202)
T ss_pred CHHHHHHHCCCEEE-EECCHHHHHHHHHHHHHHHCC--CCCCEEEEEEECC
T ss_conf 99999997899899-979999999999999987514--7997899999767
No 149
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=79.11 E-value=5.4 Score=20.35 Aligned_cols=131 Identities=22% Similarity=0.197 Sum_probs=64.9
Q ss_pred HHHHHHHHHHCCCCEEE--CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCC-CCCCCCCCH
Q ss_conf 89999999870998994--585313109766688984592162689899987218998877664224433-243334557
Q gi|254780268|r 63 IQQIVAACEVTGADAIH--PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPV-VPGSGEVYP 139 (443)
Q Consensus 63 i~~ii~~a~~~~~daih--PGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~-~p~~~~~~~ 139 (443)
.|.|++.-++.|++-|+ ||= .+..|-.++.+.|+.||+..-|......==--+ ++-.+.|+=. ..|-...+.
T Consensus 19 a~~l~~~L~~~GV~~vFGvpG~----~~~~l~dal~~~~i~~V~~rhE~~A~~mAdgYa-R~tg~pgv~~~t~GpG~~N~ 93 (571)
T PRK07710 19 AQLLLEALEKEGVEVIFGYPGG----AVLPLYDALYDCGIPHILTRHEQGAIHAAEGYA-RITGNPGVVIATSGPGATNV 93 (571)
T ss_pred HHHHHHHHHHCCCCEEEECCCC----CHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH-HHHCCCEEEEEECCHHHHHH
T ss_conf 9999999998799999984771----489999999866993993387899999999999-99799889998167289999
Q ss_pred HHHHHHHHCCCCHHHHHCC----CCCC----------------CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 9998732003301220002----3457----------------8216888750668999998754321258998168844
Q gi|254780268|r 140 HTAMPIAKEIGFPVLVKAS----AGGG----------------GRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEK 199 (443)
Q Consensus 140 ~ea~~~a~~iGyPviiKp~----~gGG----------------G~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk 199 (443)
-..+.-|..=+-|+++=.. ...| .|-...+.+++++.+.+++|.+.+.+. ..++|+++=
T Consensus 94 ~~gl~~A~~~~~Pvl~i~G~~~~~~~g~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~-~~GPV~l~i 172 (571)
T PRK07710 94 ITGLADAMIDSLPLVVFTGQVATTLIGSDAFQEADIMGLTMPVTKHNYQVRKASDLPRIIKEAFHIATTG-RPGPVVIDL 172 (571)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHC-CCCCEEEEE
T ss_conf 9999999983999699917886022689865310388762210346355189999999999999997117-997289980
No 150
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=79.04 E-value=5.4 Score=20.33 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=20.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 866447099999999888809659998
Q gi|254780268|r 5 ILIANRGEIALRILRACKELGIPTVAV 31 (443)
Q Consensus 5 iLianrGeia~riira~~elGi~tv~v 31 (443)
||-...-+-|+.+++++.+-|++.+=|
T Consensus 18 Vlr~~~~~~a~~~~~al~~gGi~~iEI 44 (209)
T PRK06552 18 VVRGESKEEALKISLAVIKGGIKAIEV 44 (209)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 997289999999999999879988999
No 151
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.04 E-value=4 Score=21.27 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=13.0
Q ss_pred HHHHHHHHCCCCCCEEEEEEC
Q ss_conf 999886515434102458972
Q gi|254780268|r 257 CVKAMKKIDYRGAGTIEFLYE 277 (443)
Q Consensus 257 A~~~~~~~g~~g~~tvEFl~~ 277 (443)
..+.++.+||+|..++|+-.+
T Consensus 238 ~~~~L~~~gY~G~~~iE~w~~ 258 (284)
T PRK13210 238 IFKTLKELNYRGPFLIEMWTE 258 (284)
T ss_pred HHHHHHHHCCCCCEEEEEECC
T ss_conf 999999819963279999248
No 152
>PRK08401 L-aspartate oxidase; Provisional
Probab=79.02 E-value=4.5 Score=20.89 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=29.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHH
Q ss_conf 70686644709999999988880965999858557
Q gi|254780268|r 2 ISKILIANRGEIALRILRACKELGIPTVAVHSTAD 36 (443)
Q Consensus 2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D 36 (443)
|..|||.+.|--.++..-.+.+.|.+++++...+-
T Consensus 1 mtdVlVVGsG~AGl~AAl~a~~~g~~v~li~k~~~ 35 (464)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTVIGPGSK 35 (464)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 98799989769999999999974996999958999
No 153
>PRK13820 argininosuccinate synthase; Provisional
Probab=78.92 E-value=5.4 Score=20.31 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=13.1
Q ss_pred HHCCHHHHHHHHHHCCCCEEE
Q ss_conf 006989999999870998994
Q gi|254780268|r 59 SYLNIQQIVAACEVTGADAIH 79 (443)
Q Consensus 59 sYldi~~ii~~a~~~~~daih 79 (443)
..|=...++++|++.|+++|-
T Consensus 95 Rplia~~~v~~A~~~ga~aia 115 (395)
T PRK13820 95 RPLIAKKIVEVAKKEGASAIA 115 (395)
T ss_pred HHHHHHHHHHHHHHCCCEEEE
T ss_conf 689999999999975982983
No 154
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=78.90 E-value=5.5 Score=20.30 Aligned_cols=11 Identities=36% Similarity=0.661 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999876
Q gi|254780268|r 393 KECMMRLNRAL 403 (443)
Q Consensus 393 ~~Ai~~l~~aL 403 (443)
++.+.+|.+.+
T Consensus 374 ~~~ie~~~~~l 384 (429)
T PRK00045 374 EEVLEKLARSL 384 (429)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 155
>PRK13122 consensus
Probab=78.10 E-value=5.7 Score=20.14 Aligned_cols=173 Identities=17% Similarity=0.150 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHH----CCCCEEECCCC-
Q ss_conf 99999999888809659998---58557718776758579991899853000698999999987----09989945853-
Q gi|254780268|r 12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEV----TGADAIHPGYG- 83 (443)
Q Consensus 12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~----~~~daihPGyG- 83 (443)
+--..+++++.+.|...+=+ +|||=..-+-.+.|.+.. |.. =.+.+.+++..++ .+..-|.=||-
T Consensus 13 pd~~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIQ~A~~rA-L~~------G~~~~~~~~~l~~~r~~~~~pivlM~Y~N 85 (242)
T PRK13122 13 KDLIENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQA-IKQ------GITIDYIFNQLEKHGDQIKCNYVLMTYYN 85 (242)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HHC------CCCHHHHHHHHHHHCCCCCCCEEEEEECH
T ss_conf 99999999999759999997898888666589999999999-976------99899999999973136798779998516
Q ss_pred -HHHC-CHHHHHHHHHCCCE-EECCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHHH-CCCCHHHHH
Q ss_conf -1310-97666889845921-62689--8999872189988776642244332433345579998-7320-033012200
Q gi|254780268|r 84 -FLSE-NAKFAEILEDHHIK-FIGPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAM-PIAK-EIGFPVLVK 156 (443)
Q Consensus 84 -fLsE-n~~fa~~~e~~Gi~-fIGPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~-~~a~-~iGyPviiK 156 (443)
+++= ...|++.|.++|+. +|=|. .+ .....+..++++|+..++.....+.++.. ..++ .-||=.++=
T Consensus 86 ~i~~~G~~~F~~~~~~~GvdGvIipDLP~e------e~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~s~GFiY~vs 159 (242)
T PRK13122 86 IICHYGEQAFFEKCRDTGVYGLIIPDLPYE------LSQRLKQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVT 159 (242)
T ss_pred HHHHHCHHHHHHHHHHCCCCEEECCCCCHH------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 988727999999998769986777899878------89999999986798689871899989999999982999669873
Q ss_pred CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEE
Q ss_conf 02345782168887506689999987543212589981688443420110
Q gi|254780268|r 157 ASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRH 206 (443)
Q Consensus 157 p~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rh 206 (443)
..| --|.+ .....++.+.+++.++.+ +-+|.+-==|..+.|
T Consensus 160 -~~G--vTG~~-~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGI~~~e~ 200 (242)
T PRK13122 160 -MNA--TTGQN-GAFHPELKRKIESIKAIA-----NVPVVAGFGIRTPQH 200 (242)
T ss_pred -CCC--CCCCC-CCCCHHHHHHHHHHHHHC-----CCCEEEECCCCCHHH
T ss_conf -354--35765-556588999999999725-----998587158799999
No 156
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=77.88 E-value=5.8 Score=20.10 Aligned_cols=96 Identities=20% Similarity=0.174 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEE
Q ss_conf 66688984592162689899987218998877664224433243334557999873200330122000234578216888
Q gi|254780268|r 90 KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIA 169 (443)
Q Consensus 90 ~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv 169 (443)
++++.++++|+.-|--|-+++ |--.+|.++- ..|+.+...-+..+....-|--|++-|+-.-|
T Consensus 205 ~lv~eLeeAGLdRiNlSv~aL----Dpk~Ak~L~G------~~dYdv~kvle~aE~i~~a~idvlIaPv~lPG------- 267 (414)
T COG2100 205 KLVDELEEAGLDRINLSVDAL----DPKLAKMLAG------RKDYDVKKVLEVAEYIANAGIDVLIAPVWLPG------- 267 (414)
T ss_pred HHHHHHHHHCCCEEEEECCCC----CHHHHHHHCC------CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCC-------
T ss_conf 999999970875588620237----9889877428------40117899999999998679888983144278-------
Q ss_pred EECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf 7506689999987543212589981688443420
Q gi|254780268|r 170 YSENDLSEAIDQARSEALAAFGNDAVYIEKYLEN 203 (443)
Q Consensus 170 ~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~ 203 (443)
.|.+|..+.++.|..-..+ -+...+.+.+|++.
T Consensus 268 ~ND~E~~~iIe~A~~iGaG-kk~p~lgiQkyipy 300 (414)
T COG2100 268 VNDDEMPKIIEWAREIGAG-KKWPPLGIQKYIPY 300 (414)
T ss_pred CCHHHHHHHHHHHHHHCCC-CCCCCCCEEEEEEE
T ss_conf 6817789999999984888-77998530775540
No 157
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012689 This entry represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway.; GO: 0018802 24-dihydroxyhept-2-ene-17-dioate aldolase activity, 0010124 phenylacetate catabolic process.
Probab=77.72 E-value=3.7 Score=21.54 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=38.2
Q ss_pred ECCCHHHHHHHHHHHH--CCCEEEE--E--CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf 4470999999998888--0965999--8--58557718776758579991899853000698999999987099899458
Q gi|254780268|r 8 ANRGEIALRILRACKE--LGIPTVA--V--HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG 81 (443)
Q Consensus 8 anrGeia~riira~~e--lGi~tv~--v--~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG 81 (443)
.+.=|=|-..++|.|= +|||-|. + -|-=.+.+-|++.|||-+|+= --.|+--=++.|-+|+.-.|+|+|+=|
T Consensus 93 i~~aeqA~~~V~A~rYPP~GiRGVGSALARASrwNrIp~Ylq~AdeeiClL--lQVEtr~al~NL~~Ia~VeGVDGVFiG 170 (249)
T TIGR02311 93 IETAEQAEAAVKATRYPPKGIRGVGSALARASRWNRIPDYLQQADEEICLL--LQVETREALENLEEIAAVEGVDGVFIG 170 (249)
T ss_pred HCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHCCHHHHEEHH--HHHHHHHHHHHHHHHHCCCCCCCEEEC
T ss_conf 037789999998506951951340078776322176125760521320232--326579988621577501786624757
Q ss_pred C
Q ss_conf 5
Q gi|254780268|r 82 Y 82 (443)
Q Consensus 82 y 82 (443)
-
T Consensus 171 P 171 (249)
T TIGR02311 171 P 171 (249)
T ss_pred C
T ss_conf 1
No 158
>pfam01326 PPDK_N Pyruvate phosphate dikinase, PEP/pyruvate binding domain. This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP).
Probab=77.33 E-value=6 Score=19.99 Aligned_cols=45 Identities=18% Similarity=0.403 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 45588999999999999988651543410245897288349982276
Q gi|254780268|r 242 SPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNT 288 (443)
Q Consensus 242 ap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~ 288 (443)
.|.|+++..++|.+.+.++-+..|+- --|||.+++|++|++-.-|
T Consensus 257 ~~~l~~~~~~~L~~~~~~lE~~~g~p--qDIEwai~~g~l~iLQ~RP 301 (327)
T pfam01326 257 EPVLTDAQLQELAELAKRLEAHFGSP--QDIEWAIDGGRLYILQARP 301 (327)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCC--CEEEEEEECCEEEEEECCC
T ss_conf 66799999999999999999982998--2317999999999996426
No 159
>pfam00148 Oxidored_nitro Nitrogenase component 1 type Oxidoreductase.
Probab=76.93 E-value=6.2 Score=19.92 Aligned_cols=17 Identities=41% Similarity=0.589 Sum_probs=7.8
Q ss_pred HCHHHHHHHHHHCCCCC
Q ss_conf 18998877664224433
Q gi|254780268|r 114 GDKITAKKTAQQLGIPV 130 (443)
Q Consensus 114 gDK~~~k~~a~~~GVP~ 130 (443)
+|-...|+++++.|+.+
T Consensus 159 ~d~~ei~~ll~~~Gi~v 175 (398)
T pfam00148 159 GDLREIKRLLEKLGIEV 175 (398)
T ss_pred CCHHHHHHHHHHCCCCE
T ss_conf 66999999999839935
No 160
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=76.87 E-value=5.8 Score=20.09 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=28.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCC--EEEEECCC
Q ss_conf 97068664470999999998888096--59998585
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGI--PTVAVHST 34 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi--~tv~v~s~ 34 (443)
||+||+|.+=|-|.-=+.+++|+.|+ +.+++..+
T Consensus 5 ~f~~I~IiGlGLIGgSlA~alk~~~~~~~I~g~d~~ 40 (307)
T PRK07502 5 LFDRVALIGLGLIGSSLARAIRRQGLAGEIVGAARS 40 (307)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 456689992787999999999854998579998499
No 161
>pfam02571 CbiJ Precorrin-6x reductase CbiJ/CobK. This family consists of Precorrin-6x reductase EC:1.3.1.54. This enzyme catalyses the reaction: precorrin-6Y + NADP(+) <= precorrin-6X + NADPH. CbiJ and CobK both catalyse the reduction of macocycle in the colbalmin biosynthesis pathway.
Probab=76.86 E-value=6.2 Score=19.90 Aligned_cols=121 Identities=21% Similarity=0.154 Sum_probs=62.3
Q ss_pred EEEE-ECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE----
Q ss_conf 6866-44709999999988880965999858557718776758579991899853000698999999987099899----
Q gi|254780268|r 4 KILI-ANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI---- 78 (443)
Q Consensus 4 ~iLi-anrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai---- 78 (443)
|||| ++-+| +..+.+.+.+.|+-+|+...-.....+. .....+..|+ ..|.+.+.+.++++++++|
T Consensus 2 ~IlilgGT~e-~r~la~~L~~~g~~~v~t~~~~~~~~~~--~~~~~~~~G~------l~~~~~m~~~i~~~~i~~vIDAT 72 (246)
T pfam02571 2 RILILGGTTE-ARALAAALAAAGVVSVVTSLAGRTAAPR--LPPLPVRVGG------FGGADGLAAYLREEGIDAVIDAT 72 (246)
T ss_pred EEEEEEECHH-HHHHHHHHHHCCCEEEEECCCHHHCCCC--CCCCCEEECC------CCCHHHHHHHHHHCCCCEEEECC
T ss_conf 6999973689-9999999985698799984755443766--7885089799------89999999999977997999899
Q ss_pred ECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 458531310976668898459216268989998721899887766422443324333455799987320033
Q gi|254780268|r 79 HPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIG 150 (443)
Q Consensus 79 hPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iG 150 (443)
||==--.|+| ..++|++.||+++-=. |.-.. -.+...|..+.+.+++...+.+.+
T Consensus 73 HPfA~~is~n--a~~a~~~~~ipyiR~e-------------Rp~~~--~~~~d~~~~v~s~~ea~~~l~~~~ 127 (246)
T pfam02571 73 HPFAAQISRN--AAAACKELGVPLLRLE-------------RPAWQ--PGPGDRWIYVDSLAEAAAALAELP 127 (246)
T ss_pred CCCHHHHHHH--HHHHHHHHCCCEEEEC-------------CCCCC--CCCCCCEEEECCHHHHHHHHHHCC
T ss_conf 9968999999--9999998599689960-------------62126--788987799799999999876467
No 162
>PTZ00081 enolase (2-phospho-D-glycerate hydrolase); Provisional
Probab=76.61 E-value=6.3 Score=19.86 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=14.4
Q ss_pred EEEEC-CCHHHHHHHHHHHHH
Q ss_conf 99955-998999999998765
Q gi|254780268|r 385 LIVHG-KNRKECMMRLNRALN 404 (443)
Q Consensus 385 iI~~g-~~R~~Ai~~l~~aL~ 404 (443)
.|-.| +.|.|.+.|..|-|+
T Consensus 401 ~iK~G~~~r~ER~aKyNrLLr 421 (442)
T PTZ00081 401 QIKTGAPCRSERNAKYNQLLR 421 (442)
T ss_pred CEECCCCCCHHHHHHHHHHHH
T ss_conf 203389841788999999999
No 163
>KOG2270 consensus
Probab=76.53 E-value=6.3 Score=19.84 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEE--EECCCCEEEEECCCCCCCCCHHH
Q ss_conf 999999999999886515434102458--97288349982276543320167
Q gi|254780268|r 248 QDRTEIGETCVKAMKKIDYRGAGTIEF--LYENGQFYFIEMNTRLQVEHPVT 297 (443)
Q Consensus 248 ~~~~~i~~~A~~~~~~~g~~g~~tvEF--l~~~~~~yflEvN~Rlqveh~vt 297 (443)
+..+.+..+-..+.+..+++.+---|| |+-+|++|+|.|.--+--.||-+
T Consensus 268 ~~Y~~~v~~MR~lY~~c~LVHADLSEfN~LyhdG~lyiIDVSQSVE~DHP~a 319 (520)
T KOG2270 268 ELYQQCVRIMRRLYQKCRLVHADLSEFNLLYHDGKLYIIDVSQSVEHDHPHA 319 (520)
T ss_pred HHHHHHHHHHHHHHHHHCEECCCHHHHHHEEECCEEEEEECCCCCCCCCHHH
T ss_conf 9999999999999987550015565531137778799997643346788058
No 164
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.32 E-value=6.4 Score=19.81 Aligned_cols=121 Identities=22% Similarity=0.285 Sum_probs=65.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCH
Q ss_conf 86644709999999988880965999858557718776758579991899853000698999999987099899458531
Q gi|254780268|r 5 ILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGF 84 (443)
Q Consensus 5 iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGf 84 (443)
|+-...-+-|.++++++.+-|++.+=|--+ ++ +.-.+|+..+++..|. .-|-|=
T Consensus 20 Vlr~~~~~~a~~i~~al~~gGi~~iEiTl~----tp---------------------~a~~~I~~l~~~~p~~-~vGaGT 73 (212)
T PRK05718 20 VIVINKLEDAVPLAKALVAGGLPVLEVTLR----TP---------------------AALEAIRAIRKEVPEA-LIGAGT 73 (212)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECC----CC---------------------HHHHHHHHHHHHCCCC-EEEEEE
T ss_conf 997489999999999999879978999578----96---------------------1999999999758981-796533
Q ss_pred HHCCHHHHHHHHHCCCEEEC-CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHH-HHCCCCCC
Q ss_conf 31097666889845921626-89899987218998877664224433243334557999873200330122-00023457
Q gi|254780268|r 85 LSENAKFAEILEDHHIKFIG-PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVL-VKASAGGG 162 (443)
Q Consensus 85 LsEn~~fa~~~e~~Gi~fIG-Ps~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPvi-iKp~~gGG 162 (443)
. -+.+-++.+.++|..|+= |.. |+.. -+.+.+.|+|.+||. .++.|+..+. +.|+-.+ +=|+...|
T Consensus 74 V-~~~e~~~~a~~aGA~FiVSP~~-------~~~v-~~~a~~~~i~~iPGv--~TpsEi~~A~-~~G~~~vK~FPA~~~g 141 (212)
T PRK05718 74 V-LNPEQLAQAIEAGAQFIVSPGL-------TPPL-LKACQDGPIPLIPGV--NTPSELMLAM-ELGLRTFKFFPAEASG 141 (212)
T ss_pred E-CCHHHHHHHHHCCCCEEECCCC-------CHHH-HHHHHHCCCCEECCC--CCHHHHHHHH-HCCCCEEEECCCCCCC
T ss_conf 1-3488999999849989984899-------8999-999998199765786--9999999999-8799989978761017
Q ss_pred C
Q ss_conf 8
Q gi|254780268|r 163 G 163 (443)
Q Consensus 163 G 163 (443)
|
T Consensus 142 G 142 (212)
T PRK05718 142 G 142 (212)
T ss_pred C
T ss_conf 9
No 165
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=76.21 E-value=6.4 Score=19.78 Aligned_cols=92 Identities=24% Similarity=0.311 Sum_probs=54.0
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCEEEEECCCHHHCC-CCHHH-CCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf 86644-709999999988880965999858557718-77675-8579991899853000698999999987099899458
Q gi|254780268|r 5 ILIAN-RGEIALRILRACKELGIPTVAVHSTADSGA-MHVRL-ADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG 81 (443)
Q Consensus 5 iLian-rGeia~riira~~elGi~tv~v~s~~D~~a-~~~~~-ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG 81 (443)
|||.+ .|-+...+++++.+.|++..++--+++... ..... .-+.+. + .|.|.+.+.++.+ |+|+|+--
T Consensus 1 IlV~GatG~iG~~vv~~L~~~g~~Vr~l~R~~~~~~~~~l~~~gve~v~-g------D~~d~~sl~~al~--gvd~v~~~ 71 (232)
T pfam05368 1 ILVFGATGYQGGSVVRASLKAGHPVRALVRDPKSELAKSLKAAGVELVE-G------DLDDHESLVEALK--GVDVVFSV 71 (232)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCEEEE-E------CCCCHHHHHHHHC--CCCEEEEE
T ss_conf 0998968289999999998589938999718736656666417988999-0------6888789999967--99889991
Q ss_pred CCHHHC-----CHHHHHHHHHCCCEEECC
Q ss_conf 531310-----976668898459216268
Q gi|254780268|r 82 YGFLSE-----NAKFAEILEDHHIKFIGP 105 (443)
Q Consensus 82 yGfLsE-----n~~fa~~~e~~Gi~fIGP 105 (443)
.++..+ ...+.+++.++|++.+=+
T Consensus 72 ~~~~~~~~~~~~~~~~~AA~~aGVk~~V~ 100 (232)
T pfam05368 72 TGFWLSKEIEDGKKLADAAKEAGVKHFIP 100 (232)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 58874177999999999999739983455
No 166
>PRK08104 consensus
Probab=76.07 E-value=6.5 Score=19.76 Aligned_cols=120 Identities=22% Similarity=0.288 Sum_probs=66.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEC-CCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 8664470999999998888096599985-855771877675857999189985300069899999998709989945853
Q gi|254780268|r 5 ILIANRGEIALRILRACKELGIPTVAVH-STADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG 83 (443)
Q Consensus 5 iLianrGeia~riira~~elGi~tv~v~-s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG 83 (443)
|+-.+.-+-|+++++++.+-|++.+=|- +.++ + .+.| +..++...|.+ -|-|
T Consensus 20 Vir~~~~~~a~~la~al~~gGi~~iEiTlrt~~----------------------a---~~~I-~~l~~~~p~~~-vGaG 72 (212)
T PRK08104 20 VIVINKLEHAVPLAKALVAGGVRVLEVTLRTPC----------------------A---LEAI-RAIAKEVPEAI-VGAG 72 (212)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECCCCH----------------------H---HHHH-HHHHHHCCCCE-EEEE
T ss_conf 997799999999999999879988999688814----------------------9---9999-99998689856-8542
Q ss_pred HHHCCHHHHHHHHHCCCEEE-CCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHH-HHCCCCC
Q ss_conf 13109766688984592162-689899987218998877664224433243334557999873200330122-0002345
Q gi|254780268|r 84 FLSENAKFAEILEDHHIKFI-GPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVL-VKASAGG 161 (443)
Q Consensus 84 fLsEn~~fa~~~e~~Gi~fI-GPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPvi-iKp~~gG 161 (443)
=. -+.+-++.+.++|..|+ -|.. |+... +.+.+.++|.+||. .++.|+..+. +.|+.++ +=|+...
T Consensus 73 TV-~~~e~~~~ai~aGA~FiVSP~~-------~~~v~-~~a~~~~i~~iPGv--~TpsEi~~A~-~~G~~~vKlFPA~~~ 140 (212)
T PRK08104 73 TV-LNPQQLAEVTEAGAQFAISPGL-------TEELL-KAATEGTIPLIPGI--STVSELMLGM-DYGLTEFKFFPAEAN 140 (212)
T ss_pred EC-CCHHHHHHHHHCCCCEEECCCC-------CHHHH-HHHHHCCCCEECCC--CCHHHHHHHH-HCCCCEEEECCCCCC
T ss_conf 02-6799999999859999984899-------99999-99998299765676--9999999999-879997997876213
Q ss_pred CC
Q ss_conf 78
Q gi|254780268|r 162 GG 163 (443)
Q Consensus 162 GG 163 (443)
||
T Consensus 141 gG 142 (212)
T PRK08104 141 GG 142 (212)
T ss_pred CC
T ss_conf 74
No 167
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.01 E-value=6.5 Score=19.75 Aligned_cols=107 Identities=20% Similarity=0.288 Sum_probs=57.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEC-CCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 8664470999999998888096599985-855771877675857999189985300069899999998709989945853
Q gi|254780268|r 5 ILIANRGEIALRILRACKELGIPTVAVH-STADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG 83 (443)
Q Consensus 5 iLianrGeia~riira~~elGi~tv~v~-s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG 83 (443)
||-...-+-|+.+++++.+-|++.+=|- +.|+ .-.+|+..++.-.|.+ -|-|
T Consensus 18 Vlr~~~~~~a~~~~~al~~gGi~~iEiTl~t~~--------------------------a~~~I~~l~~~~p~~~-iGaG 70 (210)
T PRK07455 18 VIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQ--------------------------PAELISQLREKLPECI-IGTG 70 (210)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECCCCC--------------------------HHHHHHHHHHHCCCCE-EEEE
T ss_conf 997599999999999999879988999689988--------------------------9999999998789968-9888
Q ss_pred HHHCCHHHHHHHHHCCCEEE-CC--CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf 13109766688984592162-68--98999872189988776642244332433345579998732003301
Q gi|254780268|r 84 FLSENAKFAEILEDHHIKFI-GP--SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFP 152 (443)
Q Consensus 84 fLsEn~~fa~~~e~~Gi~fI-GP--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyP 152 (443)
=. -+.+-++...++|..|+ -| +++.+ +.+.+.|+|.+||. .++.|+..+- +.|+.
T Consensus 71 TV-~~~e~~~~a~~aGA~FiVSP~~~~~vi----------~~a~~~~i~~iPGv--~TpsEi~~A~-~~G~~ 128 (210)
T PRK07455 71 TL-LTLEDLEEAIAAGAQFCFTPHVDLELI----------QAAVAADIPIIPGA--LTPTEIVTAW-QAGAS 128 (210)
T ss_pred EC-CCHHHHHHHHHCCCCEEECCCCCHHHH----------HHHHHCCCCEECCC--CCHHHHHHHH-HCCCC
T ss_conf 18-789999999986999998688889999----------99998299765886--9999999999-86998
No 168
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=75.76 E-value=4.6 Score=20.81 Aligned_cols=37 Identities=32% Similarity=0.319 Sum_probs=33.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCC
Q ss_conf 6866447099999999888809659998585577187
Q gi|254780268|r 4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAM 40 (443)
Q Consensus 4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~ 40 (443)
||+.++..+.++.+.+++.+.+.+.++|.|.||+.+-
T Consensus 2 kI~f~Gt~~fs~~~L~~L~~~~~~i~~Vvt~pdk~~g 38 (309)
T PRK00005 2 RIVFMGTPEFAVPSLKALLESGHEVVAVVTQPDRPAG 38 (309)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 8999889889999999999789947999929998668
No 169
>PRK07053 glutamine amidotransferase; Provisional
Probab=75.64 E-value=6.7 Score=19.68 Aligned_cols=89 Identities=18% Similarity=0.165 Sum_probs=54.9
Q ss_pred CCEEEEEECCCHH--HHHHHHHHHHCCCEEEEECCCH-HHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCE
Q ss_conf 9706866447099--9999998888096599985855-771877675857999189985300069899999998709989
Q gi|254780268|r 1 MISKILIANRGEI--ALRILRACKELGIPTVAVHSTA-DSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADA 77 (443)
Q Consensus 1 m~~~iLianrGei--a~riira~~elGi~tv~v~s~~-D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~da 77 (443)
|||||||..--++ -=.+-+-+++.|++.-.+.... +...+.....|-.+.+|++... |- |.
T Consensus 1 mmk~ilvlqH~~~E~pG~i~~~l~~~g~~~~~~~~~~~~~~p~~~~~~d~livlGGpms~--~d--------------~~ 64 (235)
T PRK07053 1 MMKTAVAIRHVAFEDLGSFEQVLGERGYRVRYVDVGVDDLEVLDALEPDLLVVLGGPIGV--YD--------------DA 64 (235)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCC--CC--------------CC
T ss_conf 995399996899889869999999789959999678898899996667999993899898--87--------------76
Q ss_pred EECCCCHHHCCHHHHHHHHHCCCEEECCCHH
Q ss_conf 9458531310976668898459216268989
Q gi|254780268|r 78 IHPGYGFLSENAKFAEILEDHHIKFIGPSSE 108 (443)
Q Consensus 78 ihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ 108 (443)
- |-+|.+-.+|.+.+-+.|++++|-+--
T Consensus 65 ~---~Pwl~~e~~lIr~a~~~~~PvLGIClG 92 (235)
T PRK07053 65 L---YPFLAPEIALLRQRLAAGLPTLGICLG 92 (235)
T ss_pred C---CCCHHHHHHHHHHHHHCCCCEEEECHH
T ss_conf 6---855899999999999869988998473
No 170
>pfam00208 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase.
Probab=75.43 E-value=6.7 Score=19.65 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=42.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCC
Q ss_conf 06866447099999999888809659998585577187767585799918998530006989999999870998
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGAD 76 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~d 76 (443)
+|+.|-+-|-.+..+.+.+.++|.+.|+| ||.+ -.++-+ .=+|++.|.+...+.+..
T Consensus 33 ~~v~IqGfGnVG~~~a~~l~~~Gakvvav-sD~~----------G~i~~~------~Gldi~~l~~~~~~~~~~ 89 (237)
T pfam00208 33 KTVAVQGFGNVGSYAAEKLLELGAKVVAV-SDSS----------GYIYDP------NGIDIEELLELKEEGGGR 89 (237)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE-ECCC----------CEEECC------CCCCHHHHHHHHHHHCCE
T ss_conf 99999898899999999999879969999-8287----------679999------999999999999971984
No 171
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=75.20 E-value=6.8 Score=19.61 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=20.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHH-CCEEE
Q ss_conf 68664470999999998888096599985855771877675-85799
Q gi|254780268|r 4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRL-ADESV 49 (443)
Q Consensus 4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~-ADe~~ 49 (443)
+|+|.+-|=.+.-.++-++-||.+++++-..+|......++ ||+.+
T Consensus 169 ~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i 215 (339)
T COG1064 169 WVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVI 215 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEE
T ss_conf 99998774899999999998699699995787799999984882899
No 172
>PRK09989 hypothetical protein; Provisional
Probab=75.13 E-value=6.9 Score=19.60 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=16.6
Q ss_pred HHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 9999886515434102458972
Q gi|254780268|r 256 TCVKAMKKIDYRGAGTIEFLYE 277 (443)
Q Consensus 256 ~A~~~~~~~g~~g~~tvEFl~~ 277 (443)
.-.+..+.+||.|+-..||.-.
T Consensus 223 ~if~~l~~~GY~G~ig~EY~P~ 244 (258)
T PRK09989 223 WLFRLFDEVGYQGWIGCEYKPR 244 (258)
T ss_pred HHHHHHHHHCCCCEEEEEEECC
T ss_conf 9999999849997477887349
No 173
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=74.93 E-value=6.9 Score=19.56 Aligned_cols=11 Identities=18% Similarity=0.462 Sum_probs=5.0
Q ss_pred CCCEEEEECCC
Q ss_conf 44215886689
Q gi|254780268|r 348 PGEITYFHAPG 358 (443)
Q Consensus 348 ~G~i~~~~~p~ 358 (443)
.|++..+-.|.
T Consensus 269 gG~iv~~G~~~ 279 (358)
T TIGR03451 269 AGTVVLVGVPT 279 (358)
T ss_pred CCEEEEEECCC
T ss_conf 96999992258
No 174
>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]
Probab=74.79 E-value=4.9 Score=20.61 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEE--EECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 9999999999999886515434102458--97288349982276543320167886
Q gi|254780268|r 247 AQDRTEIGETCVKAMKKIDYRGAGTIEF--LYENGQFYFIEMNTRLQVEHPVTEAI 300 (443)
Q Consensus 247 ~~~~~~i~~~A~~~~~~~g~~g~~tvEF--l~~~~~~yflEvN~Rlqveh~vte~~ 300 (443)
....+.+.++..++.+..+++..--=|| |+.+|++|||.+--=.-..||-...-
T Consensus 169 ~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~~~~p~iID~~QaV~~~hp~a~e~ 224 (268)
T COG1718 169 EGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVHDGEPYIIDVSQAVTIDHPNAFEF 224 (268)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEEECCEEEEEECCCCCCCCCCCHHHH
T ss_conf 99999999999999986294113532350677799079998832214679756899
No 175
>TIGR02776 NHEJ_ligase_prk DNA ligase D; InterPro: IPR014143 Members of this entry are DNA ligases involved in the repair of DNA double-stranded breaks by non-homologous end joining (NheJ). The system of the bacterial Ku protein (IPR009187 from INTERPRO) plus this DNA ligase is seen in about 200f bacterial genomes to date and at least one archaeon (Archeoglobus fulgidus). This entry describes a central and C-terminal domain. These two domains may be permuted, as in genus Mycobacterium, or divided into tandem ORFs. An additional N-terminal 3 -phosphoesterase (PE) domain (IPR014144 from INTERPRO) is present in some members of this ligase. Most examples of genes for this ligase are adjacent to the gene for Ku..
Probab=74.59 E-value=6.4 Score=19.81 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=34.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-CCEEEEECCCCCCCCCHHHHHHHCCCCHH
Q ss_conf 5540344558899999999999998865154341024589728-83499822765433201678863256201
Q gi|254780268|r 236 IWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYEN-GQFYFIEMNTRLQVEHPVTEAITGIDLVH 307 (443)
Q Consensus 236 iiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~-~~~yflEvN~Rlqveh~vte~~tgvdlv~ 307 (443)
|+-.=|+|.+.=...-+.....+.++.+||... |+=++ |+ =|||-.|++...-..|=|+
T Consensus 486 VfDLDP~~~~~f~~~veAA~~~k~~Ld~LgL~~-----F~KTSGGK--------Glhv~vPL~~~~~~w~~~k 545 (645)
T TIGR02776 486 VFDLDPPPGVAFKLVVEAAQLMKQLLDELGLES-----FVKTSGGK--------GLHVVVPLRPNTATWDEVK 545 (645)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCCC--------EEEEEEEECCCCCCHHHHH
T ss_conf 872688871207999999999999887616634-----23016896--------0389985168887989999
No 176
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=74.58 E-value=6.6 Score=19.73 Aligned_cols=104 Identities=19% Similarity=0.287 Sum_probs=49.4
Q ss_pred HHHHHHHHHCCCEEEEECCCHHHCCC-C--HH----HCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE--EC-----
Q ss_conf 99999888809659998585577187-7--67----58579991899853000698999999987099899--45-----
Q gi|254780268|r 15 LRILRACKELGIPTVAVHSTADSGAM-H--VR----LADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI--HP----- 80 (443)
Q Consensus 15 ~riira~~elGi~tv~v~s~~D~~a~-~--~~----~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai--hP----- 80 (443)
+++.+.|.+.|...|.++.-+|+..- + +. ..+.-++|.+.+ -+..+++|++.+++.+ -|
T Consensus 27 ~~~a~~~~~~Ga~gITvH~R~DrRHI~~~Dv~~l~~~~~~~lNiE~ap-------t~e~i~ia~~~kP~qvtLVPe~r~e 99 (240)
T PRK05265 27 VRAALIAEEAGADGITVHLREDRRHIRDRDVRRLRETLKTRLNLEMAA-------TEEMLDIALEIKPHQVTLVPEKREE 99 (240)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEECCC-------CHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 999999998399858952688634466256999998648636871188-------1889999998499859988899886
Q ss_pred -----CCCHHHCCH---HHHHHHHHCCCE---EECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC
Q ss_conf -----853131097---666889845921---6268989998721899887766422443324333
Q gi|254780268|r 81 -----GYGFLSENA---KFAEILEDHHIK---FIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG 135 (443)
Q Consensus 81 -----GyGfLsEn~---~fa~~~e~~Gi~---fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~ 135 (443)
||-+.+... .+.+.+.+.|+. ||-|.++.++. +.+.|+..+..++
T Consensus 100 ~TTegGld~~~~~~~L~~~i~~lk~~gIrvSLFiDPd~~~i~~----------a~~~Gad~VElhT 155 (240)
T PRK05265 100 LTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPDPEQIEA----------AAEVGADRIELHT 155 (240)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH----------HHHHCCCEEEEEC
T ss_conf 2678893776578999999999986598179972798789999----------9984939999834
No 177
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=74.26 E-value=7.2 Score=19.45 Aligned_cols=30 Identities=7% Similarity=0.087 Sum_probs=19.4
Q ss_pred EEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 88875066899999875432125899816884
Q gi|254780268|r 167 RIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 167 ~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
..+.+++++.+.+++|.+.+.+ +.++|+++
T Consensus 127 ~~v~~~~~~~~~l~~A~~~A~~--~rGPV~l~ 156 (579)
T TIGR03457 127 GHVRHPSRMAEVLNRCFERAWR--EMGPAQLN 156 (579)
T ss_pred EEECCHHHHHHHHHHHHHHHHC--CCCCEEEC
T ss_conf 9969999999999999999972--89977976
No 178
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=74.24 E-value=7.2 Score=19.44 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=7.0
Q ss_pred CCCCCEEEEECCCC
Q ss_conf 12442158866899
Q gi|254780268|r 346 PNPGEITYFHAPGG 359 (443)
Q Consensus 346 Ps~G~i~~~~~p~~ 359 (443)
-..|++..+-.|++
T Consensus 254 ~~gG~vv~~G~~~~ 267 (341)
T PRK05396 254 NHGGRIAMLGIPPG 267 (341)
T ss_pred HCCCEEEEEECCCC
T ss_conf 35989999955799
No 179
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=74.24 E-value=7.2 Score=19.44 Aligned_cols=103 Identities=20% Similarity=0.333 Sum_probs=49.5
Q ss_pred HHHHHHHHHCCCEEEEECCCHHHCCCC---HHH----CCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE--EC-----
Q ss_conf 999998888096599985855771877---675----8579991899853000698999999987099899--45-----
Q gi|254780268|r 15 LRILRACKELGIPTVAVHSTADSGAMH---VRL----ADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI--HP----- 80 (443)
Q Consensus 15 ~riira~~elGi~tv~v~s~~D~~a~~---~~~----ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai--hP----- 80 (443)
+++.+.|.+.|...|.++.-+|+..-. +.. .+--++|.+.+ -+.++++|.+.+++.+ -|
T Consensus 24 ~~~a~~~~~~GadgITvHlR~DrRHI~~~Dv~~l~~~~~~~lNlE~a~-------~~emi~ia~~~kP~~vtLVPe~r~e 96 (234)
T cd00003 24 VEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVRTELNLEMAP-------TEEMLEIALEVKPHQVTLVPEKREE 96 (234)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEECCCC-------CHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 999999998399858952488766675457999998658554661279-------3899999998499878987888786
Q ss_pred -----CCCHHHCCH---HHHHHHHHCCCE---EECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCC
Q ss_conf -----853131097---666889845921---626898999872189988776642244332433
Q gi|254780268|r 81 -----GYGFLSENA---KFAEILEDHHIK---FIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGS 134 (443)
Q Consensus 81 -----GyGfLsEn~---~fa~~~e~~Gi~---fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~ 134 (443)
||-+.+... .+.+.+.+.|+. ||-|.++.++. +.+.|+..+..+
T Consensus 97 lTTegGld~~~~~~~L~~~i~~lk~~~IrvSLFIDPd~~qi~~----------a~~~Gad~VElh 151 (234)
T cd00003 97 LTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPDPEQIEA----------AKEVGADRVELH 151 (234)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH----------HHHHCCCEEEEE
T ss_conf 4178892665478899999999986598279972798789999----------998493999982
No 180
>TIGR02643 T_phosphoryl thymidine phosphorylase; InterPro: IPR013465 Thymidine phosphorylase (alternate name: pyrimidine phosphorylase) 2.4.2.4 from EC is involved, in E. coli and other Proteobacteria, in (deoxy)nucleotide degradation. It is often encoded in an operon together with a deoxyribose-phosphate aldolase, a phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (2.4.2.2 from EC); the naming convention here follows standard literature practice.; GO: 0009032 thymidine phosphorylase activity.
Probab=74.16 E-value=7.2 Score=19.43 Aligned_cols=99 Identities=23% Similarity=0.367 Sum_probs=56.5
Q ss_pred CCCEEECCCCHHHCCHHHHHHHHHCCCEEECCC-------------------HHHHHHHHCHHHHHHHHHHCCCCCC---
Q ss_conf 998994585313109766688984592162689-------------------8999872189988776642244332---
Q gi|254780268|r 74 GADAIHPGYGFLSENAKFAEILEDHHIKFIGPS-------------------SEHIKIMGDKITAKKTAQQLGIPVV--- 131 (443)
Q Consensus 74 ~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs-------------------~~ai~~~gDK~~~k~~a~~~GVP~~--- 131 (443)
+-|+| |||-...++.-|-+.+.+.|+-+||=+ .++|-+.-==+.+|++|.-++.=+.
T Consensus 125 KLeaI-PGY~~~Pd~~lFR~~v~~vG~AIIGQT~~LAPADkRlYA~RDVTATVeSipLITASILsKKLAaGL~~LVlDVK 203 (440)
T TIGR02643 125 KLEAI-PGYDVAPDPELFRRVVKDVGVAIIGQTADLAPADKRLYAIRDVTATVESIPLITASILSKKLAAGLDALVLDVK 203 (440)
T ss_pred HHCCC-CCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 32268-98888988789999998759468605623361002310221322221345778899999999832100043354
Q ss_pred --CCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHH
Q ss_conf --43334557999873200330122000234578216888750668999998
Q gi|254780268|r 132 --PGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQ 181 (443)
Q Consensus 132 --p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~ 181 (443)
-|..-.+.++..+.|++| +..+.|-|++.----.|..+.+-.
T Consensus 204 vGnGAFM~~~~~s~~LA~sl--------V~VanGAGv~TtALiTdMNq~La~ 247 (440)
T TIGR02643 204 VGNGAFMPSYEESEELARSL--------VEVANGAGVRTTALITDMNQPLAS 247 (440)
T ss_pred ECCCCCCCCHHHHHHHHHHH--------HHHHCCCCCEEEEEEHHCCHHHHH
T ss_conf 05763466778999999999--------997438870123210101135353
No 181
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=73.78 E-value=6.8 Score=19.62 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=21.0
Q ss_pred EEEECCCHHHHHHHHHHHHHH--CEECCCCCCHHHHHHH
Q ss_conf 999559989999999987654--0882637788899989
Q gi|254780268|r 385 LIVHGKNRKECMMRLNRALNE--IIIDGIKTTIPLFQKL 421 (443)
Q Consensus 385 iI~~g~~R~~Ai~~l~~aL~~--~~I~Gv~TN~~~l~~i 421 (443)
||+...-|-.|++.|...-+- .-+.=+.+.-+|...+
T Consensus 229 lIT~DtyRigA~eQLk~ya~il~vp~~vv~~~~~l~~~l 267 (282)
T TIGR03499 229 LITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELAKAL 267 (282)
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHH
T ss_conf 998077767899999999999597489939999999999
No 182
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=73.52 E-value=3.9 Score=21.36 Aligned_cols=240 Identities=15% Similarity=0.180 Sum_probs=111.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCC----CCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCC
Q ss_conf 998877664224433243334----5579998732003301220002345782168887506689999987543212589
Q gi|254780268|r 116 KITAKKTAQQLGIPVVPGSGE----VYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFG 191 (443)
Q Consensus 116 K~~~k~~a~~~GVP~~p~~~~----~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fg 191 (443)
=+...+++..-.+|-...-.+ ...-|+-++.+++|--|.|=.... .-+-+.+.|...+++.++++-
T Consensus 166 ylTs~~~l~~~~~Pdm~sL~vIGgg~~g~E~aQ~faRLG~~V~~~~RS~-----~ll~~~epeis~~V~~~l~~e----- 235 (494)
T TIGR02053 166 YLTSEEALELDRIPDMESLVVIGGGAIGVELAQAFARLGSEVTILQRSE-----RLLPREEPEISAAVEEALAEE----- 235 (494)
T ss_pred EECCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEHHHHHH-----HHCCCCCHHHHHHHHHHHCCC-----
T ss_conf 3213777256879970468888652899999999985776140367998-----644646888999999984147-----
Q ss_pred CCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-
Q ss_conf 9816884434201103315777347870236566542113562255403445588999999999999988651543410-
Q gi|254780268|r 192 NDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAG- 270 (443)
Q Consensus 192 d~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~- 270 (443)
+.|-+-+--...+.|+ .+|+.+..+++-.++ .|.-|| | -+.-+.-.|.=+..|++
T Consensus 236 -eGi~~~~~~r~~~~v~---~rngg~~~~~~e~~~------~~~~~e-A-------------d~lLVATGR~PN~~gL~G 291 (494)
T TIGR02053 236 -EGIEVVTSARQVKAVS---VRNGGGKIVTVEKNG------GKAEVE-A-------------DELLVATGRRPNTDGLNG 291 (494)
T ss_pred -CCEEEEECCEEEEEEE---ECCCCEEEEEEECCC------CCCEEE-H-------------HHHHHHHCCCCCCCCCCC
T ss_conf -8779980440355444---527981899985589------874574-3-------------112555278756666774
Q ss_pred --EEEEEECCCCEEEEECCCCCCCCCH----HHHHHHC-CC----CHHHHHHHH-------H---CCCCCC---------
Q ss_conf --2458972883499822765433201----6788632-56----201123222-------1---022222---------
Q gi|254780268|r 271 --TIEFLYENGQFYFIEMNTRLQVEHP----VTEAITG-ID----LVHEQIYVA-------S---ENRLSV--------- 320 (443)
Q Consensus 271 --tvEFl~~~~~~yflEvN~Rlqveh~----vte~~tg-vd----lv~~~~~~a-------~---g~~l~~--------- 320 (443)
.+.--++ +-=++.||=|++=+.| =--.+-| ++ |+..+.+-. . +.+|++
T Consensus 292 Le~~GVk~~--~~G~I~Vde~lrTsnp~iYAAGDVt~~rl~Garfle~vAA~~G~vAA~NA~gg~~~~~d~~~~P~VvFT 369 (494)
T TIGR02053 292 LEKAGVKLD--ERGGILVDERLRTSNPGIYAAGDVTGGRLQGARFLEYVAAKEGVVAAENALGGANKKLDLTVIPRVVFT 369 (494)
T ss_pred HHHCCCEEC--CCCCEEECCCCCCCCCCEEEEECEECCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEECCCCCCEEEEC
T ss_conf 234583466--885478726203587772462022378746523577787505804520101798815540218836976
Q ss_pred ---------CCCCCCCCHHHHHHHCCCCC--CCC--CCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEE
Q ss_conf ---------11333320124533024566--221--11124421588668998446777602387707776843389999
Q gi|254780268|r 321 ---------QQKDITFSGHAIECRINAED--PEN--FIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIV 387 (443)
Q Consensus 321 ---------~~~~i~~~g~aie~Ri~aEd--p~~--f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~ 387 (443)
+..+....|...+||.-.-| |+. -.=..|.|+-...|...-|.+.-|- +.=+-+
T Consensus 370 ~P~~AsVGLtE~ea~~~G~~~~~R~~~~~~VPra~~~r~t~G~iKlva~~~T~K~svkrGk-------------ilGv~~ 436 (494)
T TIGR02053 370 DPAVASVGLTEAEAQKAGIEVDSRTLPLEAVPRARINRETRGFIKLVADPGTGKVSVKRGK-------------ILGVQV 436 (494)
T ss_pred CCCEEECCCCHHHHHHCCCCEEEEEEEHHHHHHHHHCCCCCCEEEEEEECCCCEEEEECCC-------------EEEEEE
T ss_conf 8871213575898985597045666534036889857899614899973787358764142-------------778775
Q ss_pred ECCCHHHHHHHHHHHHH
Q ss_conf 55998999999998765
Q gi|254780268|r 388 HGKNRKECMMRLNRALN 404 (443)
Q Consensus 388 ~g~~R~~Ai~~l~~aL~ 404 (443)
.++.=.|.|.-+..|++
T Consensus 437 vA~~A~e~I~~A~~ai~ 453 (494)
T TIGR02053 437 VAEEAAEVINEAALAIK 453 (494)
T ss_pred ECCCHHHHHHHHHHHHH
T ss_conf 23117889999999998
No 183
>PRK08782 consensus
Probab=73.37 E-value=7.5 Score=19.30 Aligned_cols=120 Identities=21% Similarity=0.302 Sum_probs=62.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEC-CCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 8664470999999998888096599985-855771877675857999189985300069899999998709989945853
Q gi|254780268|r 5 ILIANRGEIALRILRACKELGIPTVAVH-STADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG 83 (443)
Q Consensus 5 iLianrGeia~riira~~elGi~tv~v~-s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG 83 (443)
|+.++.-+-|+++++++.+-|++.+=|- +.+ +.-.+|+..++...| +.-|-|
T Consensus 22 Vir~~~~~~a~~~~eal~~gGi~~iEiTlrt~--------------------------~a~~~i~~l~~~~p~-~~vGaG 74 (219)
T PRK08782 22 VVTVDTLDQARRVADALLEGGLPAIELTLRTP--------------------------VAIEALAMLKRELPN-IVIGAG 74 (219)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECCCC--------------------------HHHHHHHHHHHHCCC-CEEEEE
T ss_conf 99759999999999999987998799967993--------------------------399999999986899-479999
Q ss_pred HHHCCHHHHHHHHHCCCEEE-CCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHH-HHCCCCC
Q ss_conf 13109766688984592162-689899987218998877664224433243334557999873200330122-0002345
Q gi|254780268|r 84 FLSENAKFAEILEDHHIKFI-GPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVL-VKASAGG 161 (443)
Q Consensus 84 fLsEn~~fa~~~e~~Gi~fI-GPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPvi-iKp~~gG 161 (443)
=. -+.+-++.+.++|..|+ -|.. |+.. -+.+.+.++|.+||. .++.|...+ .+.|+.++ +=|+...
T Consensus 75 TV-~~~e~~~~a~~aGA~FiVSP~~-------~~~v-~~~a~~~~i~~iPGv--~TpSEi~~A-~~~G~~~vKlFPA~~~ 142 (219)
T PRK08782 75 TV-LSERQLRQSVDAGADFLVTPGT-------PAPL-ARLLADAPIPAVPGA--ATPTELLTL-MGLGFRVCKLFPATAV 142 (219)
T ss_pred EE-CCHHHHHHHHHCCCCEEECCCC-------CHHH-HHHHHHCCCCEECCC--CCHHHHHHH-HHCCCCEEEECCCHHC
T ss_conf 70-5899999999849989987899-------7999-999998199764785--999999999-9879998997773220
Q ss_pred CC
Q ss_conf 78
Q gi|254780268|r 162 GG 163 (443)
Q Consensus 162 GG 163 (443)
||
T Consensus 143 Gg 144 (219)
T PRK08782 143 GG 144 (219)
T ss_pred CC
T ss_conf 84
No 184
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=73.04 E-value=6.5 Score=19.78 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=26.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 068664470999999998888096599985
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAVH 32 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v~ 32 (443)
+|+||.+-|+++.-+++.+++.|++.|.+.
T Consensus 13 ~~vlVIGaG~~~~~~~~~L~~~g~~~i~v~ 42 (134)
T pfam01488 13 KKVLLIGAGEMARLAAKHLLSKGAKKITIA 42 (134)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 989999960999999999997599889995
No 185
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.95 E-value=7.7 Score=19.23 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=32.0
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHH
Q ss_conf 9706866447099999999888809659998585577
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADS 37 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~ 37 (443)
|||||.|.+-|-+...|.-.+-.-|+++++...+++.
T Consensus 1 mIkkV~ViGaG~MG~~IA~~~a~~G~~V~l~D~~~e~ 37 (289)
T PRK09260 1 MMEKIVVVGAGVMGRGIAYVFASSGFQTTLVDISQEQ 37 (289)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 9676999796887899999999689988999799899
No 186
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=72.04 E-value=7.9 Score=19.16 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=6.6
Q ss_pred HHHHHHHHHHCCCCEE
Q ss_conf 8999999987099899
Q gi|254780268|r 63 IQQIVAACEVTGADAI 78 (443)
Q Consensus 63 i~~ii~~a~~~~~dai 78 (443)
+-.+++.||+.|+.-|
T Consensus 88 ~~~~~~~aK~~ga~ii 103 (179)
T TIGR03127 88 LVTVAKKAKEIGATVA 103 (179)
T ss_pred HHHHHHHHHHCCCEEE
T ss_conf 9999999998799299
No 187
>PRK11269 glyoxylate carboligase; Provisional
Probab=71.67 E-value=6.1 Score=19.96 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=9.0
Q ss_pred HHHHHHHHCCCCHHH
Q ss_conf 999873200330122
Q gi|254780268|r 140 HTAMPIAKEIGFPVL 154 (443)
Q Consensus 140 ~ea~~~a~~iGyPvi 154 (443)
+++.++++++|.||+
T Consensus 221 ~~l~~lae~l~iPV~ 235 (591)
T PRK11269 221 DLLVEFAELTGVPVI 235 (591)
T ss_pred HHHHHHHHHCCCCEE
T ss_conf 999999985399789
No 188
>PRK05481 lipoyl synthase; Provisional
Probab=71.32 E-value=3.9 Score=21.34 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=23.9
Q ss_pred HHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf 998732003301220002345782168887506689999987543212589981688443420
Q gi|254780268|r 141 TAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLEN 203 (443)
Q Consensus 141 ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~ 203 (443)
+++..+++++--++.|..- =+.+=.+.+|+.+.++..... |=+-+-|-+|+.-
T Consensus 184 ~vL~~~k~~~p~~~TKSgi-----MvGLGEt~eEv~~~~~DL~~~-----gvdilTiGQYL~P 236 (289)
T PRK05481 184 ELLKRAKELDPGIPTKSGL-----MVGLGETDEEVLEVMDDLRAH-----GVDILTIGQYLQP 236 (289)
T ss_pred HHHHHHHHHCCCCCEEEEE-----EEECCCCHHHHHHHHHHHHHC-----CCCEEEECCCCCC
T ss_conf 9999999748998241356-----775578899999999999981-----9989983403588
No 189
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=71.16 E-value=8.4 Score=18.96 Aligned_cols=56 Identities=20% Similarity=0.364 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEE--EECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 89999999999999886515434102458--972883499822765433201678863
Q gi|254780268|r 246 SAQDRTEIGETCVKAMKKIDYRGAGTIEF--LYENGQFYFIEMNTRLQVEHPVTEAIT 301 (443)
Q Consensus 246 ~~~~~~~i~~~A~~~~~~~g~~g~~tvEF--l~~~~~~yflEvN~Rlqveh~vte~~t 301 (443)
+++...++.+...++++..|+.-.--=|| |++++++|+|.+--=+...||-.++.-
T Consensus 116 ~~~~~~~il~~~~~~~~~~glVHgDLSeyNilv~~~~~~iID~pQaV~~~hp~a~~~L 173 (187)
T cd05119 116 PEELYDQILELMRKLYREAGLVHGDLSEYNILVDDGKVYIIDVPQAVEIDHPNAEEFL 173 (187)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCEEEEEECCCEECCCCCCHHHHH
T ss_conf 9999999999999999974931036555545898990899955721048998889999
No 190
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=71.04 E-value=8.5 Score=18.94 Aligned_cols=98 Identities=17% Similarity=0.271 Sum_probs=65.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 68664470999999998888096599985855771877675857999189985300069899999998709989945853
Q gi|254780268|r 4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG 83 (443)
Q Consensus 4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG 83 (443)
-|.|.+-|--.+...-++-+||.+|.++--+.|+....- ..- .||+.... -.-..+||+-
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~ms--CNP--aIGG~~KG------------~lvrEIDALG---- 65 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMS--CNP--AIGGPGKG------------HLVREIDALG---- 65 (621)
T ss_pred CEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCEEECC--CCC--CCCCCCCC------------EEEEEEHHCC----
T ss_conf 569989984204777766436980799973777446503--564--45773553------------2677524124----
Q ss_pred HHHCCHHHHHHHHHCCCEE------ECCCHHHHHHHHCHHHHHHHHHHC
Q ss_conf 1310976668898459216------268989998721899887766422
Q gi|254780268|r 84 FLSENAKFAEILEDHHIKF------IGPSSEHIKIMGDKITAKKTAQQL 126 (443)
Q Consensus 84 fLsEn~~fa~~~e~~Gi~f------IGPs~~ai~~~gDK~~~k~~a~~~ 126 (443)
...++...++||.| =||-.++.+.--||...++.|++.
T Consensus 66 -----G~Mg~~~D~~~IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~ 109 (621)
T COG0445 66 -----GLMGKAADKAGIQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNE 109 (621)
T ss_pred -----CHHHHHHHHCCCCHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHH
T ss_conf -----55777666507865333677762104506544289999999999
No 191
>TIGR01702 CO_DH_cata carbon-monoxide dehydrogenase, catalytic subunit; InterPro: IPR010047 This entry describes the Ni-containing carbon monoxide dehydrogenase (CODH) family (1.2.99.2 from EC). These enzymes reversibly oxidise CO to CO(2), and play key roles in the energy-yielding pathways of various autotrophic anaerobes, allowing these organisms to grow with CO as the sole carbon source . The active sites of these enzymes contain Ni-iron-sulphur (NiFeS) clusters. This family also includes the CODH subunit of bifunctional CODH/acetyl-CoA synthetase (CODH/ACS), which contains two Ni-containing active sites to catalyse the formation of acetyl-CoA from CO(2)-derived CO , . CODH is related to hybrid cluster proteins (HCP, or prismane) (IPR010048 from INTERPRO), a complex whose activity is not yet fully described; the hybrid Fe-S cluster in HCPs is similar to the NiFeS cluster in CODH .; GO: 0016151 nickel ion binding, 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0051539 4 iron 4 sulfur cluster binding, 0006091 generation of precursor metabolites and energy, 0005737 cytoplasm.
Probab=70.84 E-value=6.3 Score=19.87 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHHCCCCE
Q ss_conf 69899999998709989
Q gi|254780268|r 61 LNIQQIVAACEVTGADA 77 (443)
Q Consensus 61 ldi~~ii~~a~~~~~da 77 (443)
-|..+|=.+|+.-|+|.
T Consensus 113 kde~KLk~~a~~lGid~ 129 (647)
T TIGR01702 113 KDEAKLKWLAKKLGIDT 129 (647)
T ss_pred CCHHHHHHHHHHHCCCC
T ss_conf 38099999998818540
No 192
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=70.37 E-value=0.34 Score=28.83 Aligned_cols=131 Identities=18% Similarity=0.108 Sum_probs=76.5
Q ss_pred HHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 00698999999987099899458531310976668898459216268989998721899887766422443324333455
Q gi|254780268|r 59 SYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVY 138 (443)
Q Consensus 59 sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~ 138 (443)
|.++..++++.-+..+.+.. -+.+.. ....+.+|...+...++.+++.+-.....-
T Consensus 19 sl~sa~~v~~~l~~~~~~~~-----------------------~~~~~~-~~~~~~~~~~~~~~~~~~~vvfp~lhG~~g 74 (317)
T COG1181 19 SLLSAKAVLRALKGFGYDVT-----------------------PVDITE-AGLWMLDKEVTKRVLQKADVVFPVLHGPYG 74 (317)
T ss_pred EEECHHHHHHHHHCCCCEEE-----------------------EEECCC-CCEEEECCCHHHHHHCCCCEEEEECCCCCC
T ss_conf 99658999998761487158-----------------------873246-632785031012220269877871558888
Q ss_pred H-HHHHHHHHCCCCHHHHHCCCCCCCCEEEEEE----ECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEE
Q ss_conf 7-9998732003301220002345782168887----5066899999875432125899816884434201103315777
Q gi|254780268|r 139 P-HTAMPIAKEIGFPVLVKASAGGGGRGMRIAY----SENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFG 213 (443)
Q Consensus 139 ~-~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~----~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~ 213 (443)
. .....+++.+|+|++.||..+..+.|..+.. +...++.+...+.++.. ...+++|++.++ ...-+-|..
T Consensus 75 EDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~----~~~~~~e~~~~~-l~~p~~Vkp 149 (317)
T COG1181 75 EDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDE----YSSVIVEEVEEG-LGFPLFVKP 149 (317)
T ss_pred CCCHHHHHHHHHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCC----CHHHHHHHHHCC-CCCCEEEEC
T ss_conf 870699999970998760764453323509999889986786512356753345----204788877414-688789985
Q ss_pred ECCCC
Q ss_conf 34787
Q gi|254780268|r 214 DGMGN 218 (443)
Q Consensus 214 D~~g~ 218 (443)
+..|.
T Consensus 150 ~~~gS 154 (317)
T COG1181 150 AREGS 154 (317)
T ss_pred CCCEE
T ss_conf 87311
No 193
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=70.25 E-value=8.8 Score=18.82 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=18.6
Q ss_pred EEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 688875066899999875432125899816884
Q gi|254780268|r 166 MRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 166 i~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
...+.+++++...+++|.+.+.+ ..-++|+|+
T Consensus 129 ~~~v~~~~~i~~~l~~A~~~a~~-~rpGPV~l~ 160 (554)
T TIGR03254 129 AYRVLRAEDIGIGIARAIRTAVS-GRPGGVYLD 160 (554)
T ss_pred EEECCCHHHHHHHHHHHHHHHHH-CCCCCEEEE
T ss_conf 88738999999999999999864-799866995
No 194
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase; InterPro: IPR010121 Pyruvate phosphate dikinase (PPDK, or pyruvate orthophosphate dikinase) is found in plants, bacteria and archaea. The amino acid sequence identity between bacterial and plant enzymes is high, and they are similar in sequence to other PEP-utilizing enzymes. PPDK catalyses the reversible conversion of ATP and pyruvate to AMP and PEP (phosphoenolpyruvate). In bacteria such as Clostridium symbiosum, PPDK uses Mg2+ and NH4+ ions as cofactors . The enzyme has three domains: the N- and C-terminal domains each have an active site centre that catalyses a different step in the reaction, and the middle domain has a carrier histidine residue that moves between the two active centres. In plants, PPDK is localised predominantly in chloroplast stroma where it catalyses the rate-limiting step in the C4 photosynthetic pathway, namely the synthesis of PEP, which acts as the primary CO2 acceptor in C4 photosynthesis . PPDK activity in C4 plants is strictly regulated by light, its activity decreasing in darkness. This response is regulated by phosphorylation and dephosphorylation of the enzyme using ADP; such regulation is not seen in the bacterial form of the enzyme. PPDK is also found in C3 plants, but it is not known to have a photosynthetic role .; GO: 0050242 pyruvate phosphate dikinase activity.
Probab=70.15 E-value=8.2 Score=19.06 Aligned_cols=204 Identities=20% Similarity=0.388 Sum_probs=99.4
Q ss_pred HHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHH-----HHHHHCCCEEECCCHHHHHHHHCHH
Q ss_conf 75857999189985300069899999998709989945853131097666-----8898459216268989998721899
Q gi|254780268|r 43 RLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAKFA-----EILEDHHIKFIGPSSEHIKIMGDKI 117 (443)
Q Consensus 43 ~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa-----~~~e~~Gi~fIGPs~~ai~~~gDK~ 117 (443)
.|.|-..+|| ||=+.+-..|+.+| |.-|| +-++=.|=+.+|=+.+.-+..-|+.
T Consensus 107 GMMDTvLNLG--------LND~~V~GLA~~tg-------------n~RFAyDSYRRFiqMFG~vVl~ip~~~Fe~~le~~ 165 (920)
T TIGR01828 107 GMMDTVLNLG--------LNDETVKGLAKLTG-------------NARFAYDSYRRFIQMFGDVVLGIPHELFEQALENL 165 (920)
T ss_pred CCCHHHHCCC--------CCHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 8526650245--------52689999861468-------------84225687788988420142179836889999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCC-CCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 887766422443324333455799987320033012200023-4578216888750668999998754321258998168
Q gi|254780268|r 118 TAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASA-GGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVY 196 (443)
Q Consensus 118 ~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~-gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vl 196 (443)
+ .+.|+..= +..+.+++.+.++. |=-+.+-.. |- .....-.+||..|+..++. |+.+.+=.
T Consensus 166 K-----~e~g~~~D---T~Lta~Dl~~li~~--yk~~~~~~~nG~----~FPqDP~eQL~~Ai~AVF~----SW~n~RA~ 227 (920)
T TIGR01828 166 K-----KEKGVKLD---TDLTADDLKELIEK--YKKIYREATNGK----DFPQDPKEQLELAIKAVFD----SWNNPRAV 227 (920)
T ss_pred H-----HHCCCCCC---CCCCHHHHHHHHHH--HHHHHHHHHCCC----CCCCCHHHHHHHHHHHHHC----CCCCCHHH
T ss_conf 8-----76288558---51367889999999--999999986689----8773318999999999831----56873078
Q ss_pred EEE-EEEEEEE-----CCEE--EEEE---CCCCCCCCCCCCCCCCCCCCE-EEE---------------ECCCCC--CCH
Q ss_conf 844-3420110-----3315--7773---478702365665421135622-554---------------034455--889
Q gi|254780268|r 197 IEK-YLENPRH-----IEVQ--IFGD---GMGNAIHFGERDCSVQRRNQK-IWE---------------EAHSPV--ISA 247 (443)
Q Consensus 197 vEk-~i~~~rh-----iEvq--Vl~D---~~g~~v~l~erdCSiQrr~qk-iiE---------------eaPap~--l~~ 247 (443)
+=+ -+..-=| |-|| |+|+ --|+.|.| +|+=|-= -++ +-= -.|-|. +..
T Consensus 228 ~YRr~~n~Ip~~~GTAVNiQ~MVFGN~G~dSgTGV~F-TRnP~TG--Ek~ylfGEfL~NAQGEDVVAGIRTP~~i~~~~~ 304 (920)
T TIGR01828 228 VYRRRLNDIPEDLGTAVNIQSMVFGNMGEDSGTGVAF-TRNPSTG--EKKYLFGEFLINAQGEDVVAGIRTPEPISELKE 304 (920)
T ss_pred HHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCEEEE-ECCCCCC--CCCEEHHHHHHCCCCCEEECCCCCCHHHHHHHH
T ss_conf 8867632584103871578752206788887441467-5287887--664034314202477525324338800665457
Q ss_pred --------------HHHHHHHHHHHHHHHHH--CCCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf --------------99999999999988651--54341024589728834998227654
Q gi|254780268|r 248 --------------QDRTEIGETCVKAMKKI--DYRGAGTIEFLYENGQFYFIEMNTRL 290 (443)
Q Consensus 248 --------------~~~~~i~~~A~~~~~~~--g~~g~~tvEFl~~~~~~yflEvN~Rl 290 (443)
..--+.++.-.++++.| .|+=.-=+||=++.||+|+|= ||-
T Consensus 305 dareE~Gd~~~s~~~~mP~~Y~eL~~~~~~LE~HYrDMqDIEFTIE~gKLYmLQ--TR~ 361 (920)
T TIGR01828 305 DAREEMGDDENSMEADMPEVYKELLDIAEKLEGHYRDMQDIEFTIERGKLYMLQ--TRN 361 (920)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEE--CCC
T ss_conf 767632788068987428999999999999874433307641476527501333--555
No 195
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=69.81 E-value=6.2 Score=19.89 Aligned_cols=39 Identities=31% Similarity=0.284 Sum_probs=34.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCC
Q ss_conf 706866447099999999888809659998585577187
Q gi|254780268|r 2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAM 40 (443)
Q Consensus 2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~ 40 (443)
+-||+.++--+.|+.+.+++-+.|++.++|+|.||+-.-
T Consensus 1 ~mkivF~GTp~fa~~~L~~L~~~~~eivaV~Tqpdkp~g 39 (307)
T COG0223 1 MMRIVFFGTPEFAVPSLEALIEAGHEIVAVVTQPDKPAG 39 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 917999767445499999998289804899948997667
No 196
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=69.81 E-value=9 Score=18.76 Aligned_cols=38 Identities=32% Similarity=0.336 Sum_probs=15.4
Q ss_pred HHHHHHHCCCCCCCCC--CCCC-HHHHHHHHHCCCCHHHHH
Q ss_conf 8776642244332433--3455-799987320033012200
Q gi|254780268|r 119 AKKTAQQLGIPVVPGS--GEVY-PHTAMPIAKEIGFPVLVK 156 (443)
Q Consensus 119 ~k~~a~~~GVP~~p~~--~~~~-~~ea~~~a~~iGyPviiK 156 (443)
+|++=++-|+|=..++ +..+ .+-++.+|+-+|=+=++|
T Consensus 271 A~~m~~~YGIPyf~~SFyGi~Dt~~aLr~~A~~fgd~~l~~ 311 (470)
T TIGR01283 271 ARKMEEKYGIPYFEVSFYGIEDTSKALRDIAELFGDEELLK 311 (470)
T ss_pred HHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99999646897587214108889999999997639887999
No 197
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=69.80 E-value=6 Score=20.00 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=14.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 06866447099999999888809659998
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAV 31 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v 31 (443)
+.+||.+-|+|.+=.+-.||.-|-+.|.+
T Consensus 163 ~~vlv~GaGPiGlma~AVAKa~GA~~Vi~ 191 (341)
T TIGR00692 163 EDVLVIGAGPIGLMAVAVAKAAGARNVIV 191 (341)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 71899857747899999987727840599
No 198
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=69.56 E-value=9.1 Score=18.73 Aligned_cols=107 Identities=27% Similarity=0.459 Sum_probs=56.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEC-CCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 8664470999999998888096599985-855771877675857999189985300069899999998709989945853
Q gi|254780268|r 5 ILIANRGEIALRILRACKELGIPTVAVH-STADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG 83 (443)
Q Consensus 5 iLianrGeia~riira~~elGi~tv~v~-s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG 83 (443)
|+-++.-+-|.++++++.+-|++.+=|- +.++ + .+. |+..+++-.+.+ -|-|
T Consensus 20 Vlr~~~~~~a~~~~~al~~gGi~~iEITlrt~~----------------------a---~~~-I~~l~~~~p~~~-vGaG 72 (212)
T PRK06015 20 VLLIDDVEHAVPLARALARGGLPAIEITLRTPA----------------------A---LDA-IRAVAAEVEEAI-VGAG 72 (212)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECCCCC----------------------H---HHH-HHHHHHHCCCCE-EEEE
T ss_conf 997799999999999999879988999689951----------------------9---999-999998699967-9542
Q ss_pred HHHCCHHHHHHHHHCCCEEEC-C--CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf 131097666889845921626-8--98999872189988776642244332433345579998732003301
Q gi|254780268|r 84 FLSENAKFAEILEDHHIKFIG-P--SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFP 152 (443)
Q Consensus 84 fLsEn~~fa~~~e~~Gi~fIG-P--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyP 152 (443)
=. -+.+-++.+.++|..|+= | +++.+ +.+++.|+|.+||. .++.|...+. +.|+.
T Consensus 73 TV-l~~e~~~~a~~aGA~FiVSP~~~~~v~----------~~a~~~~i~~iPGv--~TpsEi~~A~-~~G~~ 130 (212)
T PRK06015 73 TI-LNAKQFEDAAKAGSRFIVSPGTTQELL----------AAANDSDVPLLPGA--ITPSEVMALR-EEGYT 130 (212)
T ss_pred EC-CCHHHHHHHHHCCCCEEECCCCCHHHH----------HHHHHCCCCEECCC--CCHHHHHHHH-HCCCC
T ss_conf 11-569999999984998998589999999----------99998399773786--9999999999-87999
No 199
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=69.52 E-value=9.1 Score=18.72 Aligned_cols=217 Identities=17% Similarity=0.244 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC----CCCEEECCCC-
Q ss_conf 99999999888809659998---585577187767585799918998530006989999999870----9989945853-
Q gi|254780268|r 12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT----GADAIHPGYG- 83 (443)
Q Consensus 12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~----~~daihPGyG- 83 (443)
|--.++++++-+-|...+=+ ||||=..-+-.+.|.+-- |..+ .+.+.+++..++. +.--|.=+|-
T Consensus 23 e~~~~~~~~l~~~Gad~iEiGiPfSDP~aDGpvIq~a~~~A-L~~G------~~~~~~f~~~~~~r~~~~~pivlM~Y~N 95 (256)
T PRK13111 23 ETSLEILKALVEAGADIIELGIPFSDPVADGPVIQRASLRA-LAAG------VTLADVLELLREIRAKPTIPIVLMTYYN 95 (256)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HHCC------CCHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 99999999999659999997888788766579999999999-9779------9699999999998606899889985030
Q ss_pred -HHHCC-HHHHHHHHHCCCE-EECCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHHH-CCCCHHHHH
Q ss_conf -13109-7666889845921-62689--8999872189988776642244332433345579998-7320-033012200
Q gi|254780268|r 84 -FLSEN-AKFAEILEDHHIK-FIGPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAM-PIAK-EIGFPVLVK 156 (443)
Q Consensus 84 -fLsEn-~~fa~~~e~~Gi~-fIGPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~-~~a~-~iGyPviiK 156 (443)
++.-. ..|.+.|.++|+. +|=|. .+ .-...++.++++|+..++.....++++.+ ..++ .-||=..+=
T Consensus 96 ~i~~~G~e~F~~~~~~~GvdGvIipDLP~e------E~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~s~gfiY~vs 169 (256)
T PRK13111 96 PIFQYGVEAFAADAAEAGVDGLIIPDLPPE------EAEEFRAAAKKHGIDLIFLVAPTTTDERLKKIASHASGFVYYVS 169 (256)
T ss_pred HHHHHCHHHHHHHHHHCCCCEEEECCCCHH------HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 898709999999999759977981699978------88999999997598089996999988999999962698599985
Q ss_pred CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 02345782168887506689999987543212589981688443420110331577734787023656654211356225
Q gi|254780268|r 157 ASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKI 236 (443)
Q Consensus 157 p~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qki 236 (443)
..| --|.+ -...+++.+.+++.++.+ +-++.+-==|..+.|+.- +..+ -..+.+|.. + -|.
T Consensus 170 -~~G--vTG~~-~~~~~~~~~~i~~ik~~t-----~~Pi~vGFGIs~~e~v~~--~~~~-aDGvIVGSa---i----v~~ 230 (256)
T PRK13111 170 -RAG--VTGAR-SADAADVADLLARLKAHT-----DLPVAVGFGISTPEQAAA--IAEG-ADGVIVGSA---L----VKI 230 (256)
T ss_pred -CCC--CCCCC-CCCHHHHHHHHHHHHHCC-----CCCEEEECCCCCHHHHHH--HHCC-CCEEEECHH---H----HHH
T ss_conf -677--67887-666288999999998706-----897588528899999999--9745-999998689---9----999
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 5403445588999999999999988651
Q gi|254780268|r 237 WEEAHSPVISAQDRTEIGETCVKAMKKI 264 (443)
Q Consensus 237 iEeaPap~l~~~~~~~i~~~A~~~~~~~ 264 (443)
||.. -+++..+.+.+++..+-.++
T Consensus 231 i~~~----~~~~~~~~v~~f~~~lk~~~ 254 (256)
T PRK13111 231 IEAA----DPEEALAALAEFVKELKAAL 254 (256)
T ss_pred HHHC----CHHHHHHHHHHHHHHHHHHH
T ss_conf 9843----97778999999999999986
No 200
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=69.35 E-value=6.5 Score=19.74 Aligned_cols=117 Identities=13% Similarity=0.208 Sum_probs=59.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEE-EE---CCCCCCCCHHCCHHHHHHHHHHCCCCE-
Q ss_conf 0686644709999999988880965999858557718776758579-99---189985300069899999998709989-
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADES-VC---IGPPSSKDSYLNIQQIVAACEVTGADA- 77 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~-~~---i~~~~~~~sYldi~~ii~~a~~~~~da- 77 (443)
.||||.+-|-+...+.+.+-.+|+..+.+ -|.|.....- +..+. |. +|. + -.+.+-+..++.+.+.
T Consensus 2 skVlivG~GglG~~~~~~La~~Gvg~i~l-vD~D~ve~sN-L~Rq~l~~~~diG~-~------Ka~~~~~~l~~~np~~~ 72 (134)
T pfam00899 2 SRVLVVGAGGLGSPAAEYLARAGVGKLTL-VDFDTVELSN-LNRQILFTESDIGK-P------KAEVAKERLRAINPDVE 72 (134)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEE-EECCCCCCCC-CCCEEECCHHHCCC-E------EHHHHHHHHHHHCCCCE
T ss_conf 88999898889999999999938974999-9895676322-27224233646688-1------07999999997789958
Q ss_pred EECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCC
Q ss_conf 945853131097666889845921626898999872189988776642244332433
Q gi|254780268|r 78 IHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGS 134 (443)
Q Consensus 78 ihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~ 134 (443)
|.+=-.++++ ..+.+.+.+..+.+... +....|...-+.+.+.++|.+-+.
T Consensus 73 i~~~~~~i~~-~~~~~~~~~~DvVi~~~-----Dn~~~r~~ln~~c~~~~ip~i~~~ 123 (134)
T pfam00899 73 VEAYPERLTP-ENLEELLKGADLVVDAL-----DNFAARYLLNDACVKRGIPLISAG 123 (134)
T ss_pred EEEEECCCCH-HHHHHCCCCCCEEEECC-----CCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999256797-78764264488999998-----999999999999998599899955
No 201
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=69.33 E-value=9.2 Score=18.69 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=3.6
Q ss_pred HHHHHHCCCE
Q ss_conf 9988880965
Q gi|254780268|r 18 LRACKELGIP 27 (443)
Q Consensus 18 ira~~elGi~ 27 (443)
+|-||.||++
T Consensus 52 ~Rf~kkLGf~ 61 (284)
T PRK11302 52 NRFCRSLDTK 61 (284)
T ss_pred HHHHHHHCCC
T ss_conf 9999995789
No 202
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=69.09 E-value=9.3 Score=18.66 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q ss_conf 668999998754
Q gi|254780268|r 173 NDLSEAIDQARS 184 (443)
Q Consensus 173 ~el~~a~~~a~~ 184 (443)
.++.+..+.|++
T Consensus 89 ~~~~~~~~~aK~ 100 (179)
T cd05005 89 SSVVNAAEKAKK 100 (179)
T ss_pred HHHHHHHHHHHH
T ss_conf 689999999998
No 203
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=68.75 E-value=6.3 Score=19.84 Aligned_cols=13 Identities=31% Similarity=0.324 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 9899999999876
Q gi|254780268|r 391 NRKECMMRLNRAL 403 (443)
Q Consensus 391 ~R~~Ai~~l~~aL 403 (443)
+-.+|++||.+||
T Consensus 390 ~l~ea~~Rl~~~L 402 (402)
T TIGR03542 390 NIVAACERIKHAL 402 (402)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999759
No 204
>pfam03599 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit.
Probab=68.63 E-value=9.5 Score=18.59 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=31.9
Q ss_pred HHHHHHHHH----CCCEE--ECCCHHHHHHHHCHHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCC
Q ss_conf 766688984----59216--268989998721899887766422--44332433345579998732003301220002
Q gi|254780268|r 89 AKFAEILED----HHIKF--IGPSSEHIKIMGDKITAKKTAQQL--GIPVVPGSGEVYPHTAMPIAKEIGFPVLVKAS 158 (443)
Q Consensus 89 ~~fa~~~e~----~Gi~f--IGPs~~ai~~~gDK~~~k~~a~~~--GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~ 158 (443)
..|++.+++ .++++ ++-.|++++. .++.+ .=|.+-+....+-++..+.|.+.+-|+.+++.
T Consensus 82 ~~fa~~vk~V~~~~~~pliL~~~dp~vl~a---------ale~~~~~rPLlyaAt~~N~~~m~~lA~~~~~Pv~v~a~ 150 (384)
T pfam03599 82 KEFAKAVEKVLQAVDVPLVIGGSDPEVLKA---------ALEVAEDERPLLYAATLDNYKEIAELALEYKHPVLLWSI 150 (384)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHH---------HHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 999999999996469988998089999999---------999746589778548998999999999974982899748
No 205
>PRK06895 para-aminobenzoate synthase component II; Provisional
Probab=68.61 E-value=9.5 Score=18.59 Aligned_cols=32 Identities=25% Similarity=0.541 Sum_probs=25.2
Q ss_pred CCEEEEEECCCHH-HHHHHHHHHHCCCEEEEEC
Q ss_conf 9706866447099-9999998888096599985
Q gi|254780268|r 1 MISKILIANRGEI-ALRILRACKELGIPTVAVH 32 (443)
Q Consensus 1 m~~~iLianrGei-a~riira~~elGi~tv~v~ 32 (443)
|.+||||...|-- .--|.|.+|++|+++.++.
T Consensus 1 M~~kILiiD~~dsfT~ni~~~lr~lg~~~~v~~ 33 (191)
T PRK06895 1 MATNLLIINNHDSFTFNLVDLIRKLGVPMKVVN 33 (191)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 998699996988489999999987799699984
No 206
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=68.51 E-value=7 Score=19.52 Aligned_cols=184 Identities=18% Similarity=0.247 Sum_probs=95.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf 06866447099999999888809659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY 82 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy 82 (443)
+||-|++.|+-.+-+..-+-++|++. .|| .|+|.-=-==+|-||. .-|+-+-|..=.++.+-=+|-==|
T Consensus 143 ~kVAViGaGPAGL~cA~elAk~Gh~V-tvf-----EALhKPGGV~~YGIPe-----fRLpKei~~~E~k~LkklGv~fr~ 211 (462)
T TIGR01316 143 KKVAVIGAGPAGLACASELAKKGHEV-TVF-----EALHKPGGVLAYGIPE-----FRLPKEIVETEVKKLKKLGVKFRT 211 (462)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEE-EEE-----EECCCCCCEEEECCCC-----CCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 77999846821468899997479869-999-----7148998567536888-----548757889888876326637994
Q ss_pred CHHH-CCHHHHHHHHHC--CCEEECCC---HHHHHHHHC---------HHHHHHHH------HHCCCCCCCCCCC-----
Q ss_conf 3131-097666889845--92162689---899987218---------99887766------4224433243334-----
Q gi|254780268|r 83 GFLS-ENAKFAEILEDH--HIKFIGPS---SEHIKIMGD---------KITAKKTA------QQLGIPVVPGSGE----- 136 (443)
Q Consensus 83 GfLs-En~~fa~~~e~~--Gi~fIGPs---~~ai~~~gD---------K~~~k~~a------~~~GVP~~p~~~~----- 136 (443)
+||= -|.+|.+.++++ .-.|||.. |+-+.+-|+ --.+|--+ -+.++|+.-+-.+
T Consensus 212 ~~lvGkt~TL~eL~~~YGfDAVFIgtGAG~pkl~NipG~~L~gvysA~dfLtR~nLmKAyefp~~dtPv~~gK~vvviGg 291 (462)
T TIGR01316 212 DYLVGKTVTLEELLEKYGFDAVFIGTGAGLPKLLNIPGEELKGVYSANDFLTRVNLMKAYEFPKKDTPVEVGKKVVVIGG 291 (462)
T ss_pred CCEECCCHHHHHHHHHCCCCEEEEEECCCCCEECCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEECC
T ss_conf 43750511288888751970799950689870016784343400223468877777654236678875654476899878
Q ss_pred -CCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEE--ECHHHHHH---HHHHHHHHHCCCCCCCEEEEEEEEEEEECCEE
Q ss_conf -5579998732003301220002345782168887--50668999---99875432125899816884434201103315
Q gi|254780268|r 137 -VYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAY--SENDLSEA---IDQARSEALAAFGNDAVYIEKYLENPRHIEVQ 210 (443)
Q Consensus 137 -~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~--~~~el~~a---~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvq 210 (443)
.+.-|+..-|.++|-= -+.+++ +.+|..+- |.++. +..|-++=+++ -|.
T Consensus 292 GntAvD~artAlRLGaE------------qvh~~YRrtRedmtAr~EEi~ha~--------eEGVkfhfl~Q-----pve 346 (462)
T TIGR01316 292 GNTAVDAARTALRLGAE------------QVHVVYRRTREDMTAREEEIKHAE--------EEGVKFHFLLQ-----PVE 346 (462)
T ss_pred CHHHHHHHHHHHHCCCC------------EEEEEEECCCCCCHHHHHHHHHHH--------HCCCEEEEEEC-----CEE
T ss_conf 53678777666452842------------369988547775136699999885--------38928998742-----168
Q ss_pred EEEECCCCCCCC
Q ss_conf 777347870236
Q gi|254780268|r 211 IFGDGMGNAIHF 222 (443)
Q Consensus 211 Vl~D~~g~~v~l 222 (443)
++||-.|++..+
T Consensus 347 ~iGdE~G~V~av 358 (462)
T TIGR01316 347 VIGDEEGEVKAV 358 (462)
T ss_pred EEECCCCEEEEE
T ss_conf 986576518999
No 207
>PRK06801 hypothetical protein; Provisional
Probab=68.51 E-value=9.5 Score=18.58 Aligned_cols=75 Identities=23% Similarity=0.223 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCH---HHHHHHHHHCCCCCCCCCCCC
Q ss_conf 69899999998709989945853131097666889845921626898999872189---988776642244332433345
Q gi|254780268|r 61 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDK---ITAKKTAQQLGIPVVPGSGEV 137 (443)
Q Consensus 61 ldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK---~~~k~~a~~~GVP~~p~~~~~ 137 (443)
-.+.+++++|.+.+...|. +-++..++.++-+ ...+.+++++.||++-...-.
T Consensus 29 e~~~avi~AAee~~sPvIl------------------------q~s~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDHg 84 (286)
T PRK06801 29 HFLRALFAAAKQERSPFII------------------------NIAEVHFKYISLESLVEAVKFEAAHHDIPVVLNLDHG 84 (286)
T ss_pred HHHHHHHHHHHHHCCCEEE------------------------ECCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9999999999997879899------------------------8067577566999999999999987799899989999
Q ss_pred CHHHHHHHHHCCCCH-HHHHCCC
Q ss_conf 579998732003301-2200023
Q gi|254780268|r 138 YPHTAMPIAKEIGFP-VLVKASA 159 (443)
Q Consensus 138 ~~~ea~~~a~~iGyP-viiKp~~ 159 (443)
..-+....+-+.||- ||+-.|.
T Consensus 85 ~~~e~i~~ai~~Gf~SVM~DgS~ 107 (286)
T PRK06801 85 LHFEAVVRALRLGFSSVMFDGST 107 (286)
T ss_pred CCHHHHHHHHHCCCCEEEEECCC
T ss_conf 99999999998299879974998
No 208
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268 These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=68.33 E-value=6.4 Score=19.81 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=36.4
Q ss_pred HHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf 9998732003301220002345782168887506689999987543212589981688443420
Q gi|254780268|r 140 HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLEN 203 (443)
Q Consensus 140 ~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~ 203 (443)
-+++..+-+.+=||+||--. -.+-+|+..|-|....++. + .+-||+|+=|-.
T Consensus 122 F~LL~~vG~~~KPVLLKRG~---------~aTi~EwL~AAEYIl~~Gs-N--~~ViLCERGIRT 173 (262)
T TIGR01361 122 FELLKEVGKQGKPVLLKRGM---------GATIEEWLEAAEYILSEGS-N--GNVILCERGIRT 173 (262)
T ss_pred HHHHHHHHHCCCCEEEECCC---------CHHHHHHHHHHHHHHHCCC-C--CCEEEEECCCCC
T ss_conf 69999972237975530772---------1589999999999984688-9--954899758567
No 209
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=68.12 E-value=9.7 Score=18.52 Aligned_cols=107 Identities=24% Similarity=0.275 Sum_probs=60.7
Q ss_pred EEECCCHHHHHHHHHHHHCCCEEEEE-CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCH
Q ss_conf 66447099999999888809659998-58557718776758579991899853000698999999987099899458531
Q gi|254780268|r 6 LIANRGEIALRILRACKELGIPTVAV-HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGF 84 (443)
Q Consensus 6 LianrGeia~riira~~elGi~tv~v-~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGf 84 (443)
|-+..-+-|+++++++.+-|++++=| ++.|+ .-.+|+..++.-.+.++-|-|=
T Consensus 16 lR~~~~~~a~~~~~al~~~Gi~~iEVTl~tp~--------------------------a~~~I~~l~~~~~~~~~iGAGT 69 (206)
T PRK09140 16 LRGITPDEALAHVGALIEAGFRAIEIPLNSPD--------------------------PFDSIAALVKALGDDALIGAGT 69 (206)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCCCC--------------------------HHHHHHHHHHHCCCCEEEEEEE
T ss_conf 95899999999999999869988999179976--------------------------9999999999679865998620
Q ss_pred HHCCHHHHHHHHHCCCEEE-CC--CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf 3109766688984592162-68--98999872189988776642244332433345579998732003301
Q gi|254780268|r 85 LSENAKFAEILEDHHIKFI-GP--SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFP 152 (443)
Q Consensus 85 LsEn~~fa~~~e~~Gi~fI-GP--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyP 152 (443)
. -+.+-++...++|..|+ -| +++.+ +.+++.|+|.+||. .++.|...+. +.|+.
T Consensus 70 V-lt~e~~~~ai~aGA~FiVSP~~~~~vi----------~~a~~~~i~~iPG~--~TPsEi~~A~-~~Ga~ 126 (206)
T PRK09140 70 V-LSPEQVDRLADAGGRLIVTPNIDPEVI----------RRAVAYGMTVMPGV--ATPTEAFAAL-RAGAD 126 (206)
T ss_pred C-CCHHHHHHHHHCCCCEEECCCCCHHHH----------HHHHHCCCCCCCCC--CCHHHHHHHH-HCCCC
T ss_conf 4-679999999985999999999989999----------99998299652785--9999999999-85987
No 210
>PRK12928 lipoyl synthase; Provisional
Probab=67.93 E-value=5.7 Score=20.16 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=5.7
Q ss_pred EECHHHHHHHHHH
Q ss_conf 7506689999987
Q gi|254780268|r 170 YSENDLSEAIDQA 182 (443)
Q Consensus 170 ~~~~el~~a~~~a 182 (443)
.+.+|+.+.++..
T Consensus 216 Et~eEv~~~~~DL 228 (290)
T PRK12928 216 ETEDEVIETLRDL 228 (290)
T ss_pred CCHHHHHHHHHHH
T ss_conf 8899999999999
No 211
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=67.89 E-value=9.8 Score=18.49 Aligned_cols=16 Identities=31% Similarity=0.792 Sum_probs=9.9
Q ss_pred EEEEEECHHHHHHHHH
Q ss_conf 6888750668999998
Q gi|254780268|r 166 MRIAYSENDLSEAIDQ 181 (443)
Q Consensus 166 i~vv~~~~el~~a~~~ 181 (443)
+.+|++++||.++++.
T Consensus 270 ~~v~~~~~~l~~al~~ 285 (412)
T PRK05703 270 VKVAYDPKELAKALEQ 285 (412)
T ss_pred EEEECCHHHHHHHHHH
T ss_conf 7984799999999987
No 212
>TIGR02015 BchY chlorophyllide reductase subunit Y; InterPro: IPR010245 This entry represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase , . This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.; GO: 0016731 oxidoreductase activity acting on iron-sulfur proteins as donors NAD or NADP as acceptor, 0015979 photosynthesis, 0030494 bacteriochlorophyll biosynthetic process, 0016021 integral to membrane.
Probab=67.41 E-value=10 Score=18.43 Aligned_cols=65 Identities=18% Similarity=0.267 Sum_probs=29.7
Q ss_pred CCCHHHHHHHCCCCCC----CCCCCC--CCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf 3201245330245662----211112--4421588668998446777602387707776843389999559989999999
Q gi|254780268|r 326 TFSGHAIECRINAEDP----ENFIPN--PGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRL 399 (443)
Q Consensus 326 ~~~g~aie~Ri~aEdp----~~f~Ps--~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l 399 (443)
..+|..+..|-+-||- ..|.|. .|+-.- +.....-...+-||-++|.--=..++.=...+..+
T Consensus 336 ~~~G~~VkyR~~LE~D~~Av~~f~PDL~IGTT~l-----------~~~AK~~GiPalYfTN~ISARPl~~~aGA~Sl~~~ 404 (426)
T TIGR02015 336 EALGVEVKYRASLEDDMEAVEEFEPDLAIGTTPL-----------VQFAKEKGIPALYFTNLISARPLMGPAGAGSLLQV 404 (426)
T ss_pred HHCCCEEEECCCHHHHHHHHHCCCCCEEEECCCH-----------HHHHHHCCCCEEEHHHCHHHCCCCCCCHHHHHHHH
T ss_conf 8479558860223678999961699757616735-----------67877548961211101120322100017899999
Q ss_pred HH
Q ss_conf 98
Q gi|254780268|r 400 NR 401 (443)
Q Consensus 400 ~~ 401 (443)
..
T Consensus 405 i~ 406 (426)
T TIGR02015 405 IN 406 (426)
T ss_pred HH
T ss_conf 99
No 213
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=67.18 E-value=10 Score=18.40 Aligned_cols=126 Identities=18% Similarity=0.245 Sum_probs=71.9
Q ss_pred HHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC-CCCEEECCCCHHHCC----H
Q ss_conf 99999888809659998585577187767585799918998530006989999999870-998994585313109----7
Q gi|254780268|r 15 LRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT-GADAIHPGYGFLSEN----A 89 (443)
Q Consensus 15 ~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~-~~daihPGyGfLsEn----~ 89 (443)
.|+++++.++|++.|=+ =|+.+.. .-|+..||+-.++. +.+-|- |.-| +
T Consensus 51 ~~l~~~~~~~Gi~kvRl-------------------TGGEPLl--R~dl~~li~~l~~~~gi~~is-----lTTNG~lL~ 104 (329)
T PRK13361 51 AWLAQAFTELGVRKIRL-------------------TGGEPLV--RTGCDQLVARLGKLPGLEELS-----MTTNGSRLA 104 (329)
T ss_pred HHHHHHHHHCCCEEEEE-------------------ECCCCCC--CCCHHHHHHHHHHCCCCCEEE-----EECCHHHHH
T ss_conf 99999999729528996-------------------2788223--568899999986179977189-----966477689
Q ss_pred HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC-HHHHHCCCCCCCCEEEE
Q ss_conf 66688984592162689899987218998877664224433243334557999873200330-12200023457821688
Q gi|254780268|r 90 KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF-PVLVKASAGGGGRGMRI 168 (443)
Q Consensus 90 ~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGy-PviiKp~~gGGG~Gi~v 168 (443)
.+|..+.++|+.-|--|-+++ |..+++++...-.++ ..-+..+.|.+.|| ||=|-.+-- .
T Consensus 105 ~~a~~Lk~aGL~rvNISLDsL----d~~~f~~ITr~~~l~--------~Vl~gI~aA~~~G~~~VKiN~V~l-------r 165 (329)
T PRK13361 105 RFAAELADAGLKRLNISLDTL----NPDLFAALTRNGRLE--------RVIAGIDAAKAAGFERIKLNAVIL-------R 165 (329)
T ss_pred HHHHHHHHCCCCEEEEECCCC----CHHHHHHHHCCCCHH--------HHHHHHHHHHHCCCCEEEEEEEEE-------C
T ss_conf 999999977998699735779----999999772899769--------999999999977997388999983-------6
Q ss_pred EEECHHHHHHHHHHHHH
Q ss_conf 87506689999987543
Q gi|254780268|r 169 AYSENDLSEAIDQARSE 185 (443)
Q Consensus 169 v~~~~el~~a~~~a~~e 185 (443)
=.|.+|+.+.++.+...
T Consensus 166 g~NddEi~~l~~~~~~~ 182 (329)
T PRK13361 166 GQNDDEVLDLVEFCRER 182 (329)
T ss_pred CCCHHHHHHHHHHHHHC
T ss_conf 87888999999999748
No 214
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=67.16 E-value=9.9 Score=18.46 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=26.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 68664470999999998888096599985
Q gi|254780268|r 4 KILIANRGEIALRILRACKELGIPTVAVH 32 (443)
Q Consensus 4 ~iLianrGeia~riira~~elGi~tv~v~ 32 (443)
|++|.+-|.|++.+...++++|.++..+.
T Consensus 1 rv~iiGgG~ig~E~A~~l~~~G~~Vtiie 29 (82)
T pfam00070 1 RVVVVGGGYIGLEFASALAKLGSKVTVVE 29 (82)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 99999988999999999986392789981
No 215
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=67.01 E-value=10 Score=18.37 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=29.8
Q ss_pred CCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 33012200023457821688875066899999875432125899816884
Q gi|254780268|r 149 IGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 149 iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
+...-+.||. .|-...+.+++++.+.+++|.+.|.+ +.++|+||
T Consensus 112 ~d~~~~~~~~----tK~~~~v~~~~~~~~~~~~A~~~A~~--~~GPV~l~ 155 (164)
T cd07039 112 VDLLALFKDV----AVYNETVTSPEQLPELLDRAIRTAIA--KRGVAVLI 155 (164)
T ss_pred CCHHHHHHHH----HCEEEECCCHHHHHHHHHHHHHHHCC--CCCCEEEE
T ss_conf 7499998997----45788859999999999999998540--89999999
No 216
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=66.79 E-value=7.2 Score=19.43 Aligned_cols=62 Identities=21% Similarity=0.372 Sum_probs=34.6
Q ss_pred HHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHH
Q ss_conf 99988880965999858557718776758579991899853000698999999987099899458531310976668898
Q gi|254780268|r 17 ILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILE 96 (443)
Q Consensus 17 iira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e 96 (443)
+.=++++||++.+.| .|.+.+. ==++++|..|..-|+=|--| ||..++|..++
T Consensus 82 VAlsa~~LG~~A~IV--MP~tTP~------------------------IKV~AVk~~GgeVvLhG~~y-~~A~~~A~eL~ 134 (508)
T TIGR01124 82 VALSAEKLGLKAVIV--MPETTPD------------------------IKVDAVKAFGGEVVLHGDNY-DDAKDHAIELA 134 (508)
T ss_pred HHHHHHHCCCCEEEE--CCCCCCC------------------------CCHHHEECCCCEEEEECCCH-HHHHHHHHHHH
T ss_conf 987663179726987--8888822------------------------00120312698799737985-79999999999
Q ss_pred -HCCCEEECC
Q ss_conf -459216268
Q gi|254780268|r 97 -DHHIKFIGP 105 (443)
Q Consensus 97 -~~Gi~fIGP 105 (443)
+.|++||-|
T Consensus 135 q~~GlTfi~P 144 (508)
T TIGR01124 135 QEKGLTFIHP 144 (508)
T ss_pred HHCCCEEECC
T ss_conf 7368865278
No 217
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=66.79 E-value=10 Score=18.34 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=54.8
Q ss_pred CHHCCHHHHHHHHHHCCCCEEE--CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCC--C
Q ss_conf 0006989999999870998994--58531310976668898459216268989998721899887766422443324--3
Q gi|254780268|r 58 DSYLNIQQIVAACEVTGADAIH--PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVP--G 133 (443)
Q Consensus 58 ~sYldi~~ii~~a~~~~~daih--PGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p--~ 133 (443)
.|+| ..++-+.|++.|++..- -+|| +|-+.+.+..+..+||-.+. -+..+|+.+.+.|+|++. +
T Consensus 13 Ss~l-a~~m~k~A~~~gi~~~i~A~~~~------~~~d~~~~yDvilLaPQv~~-----~~~~lk~~ad~~Gi~v~~i~~ 80 (99)
T cd05565 13 SGLL-ANALNKGAKERGVPLEAAAGAYG------SHYDMIPDYDLVILAPQMAS-----YYDELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred HHHH-HHHHHHHHHHCCCCEEEEEEECH------HHHHHHHCCCEEEECHHHHH-----HHHHHHHHHHHCCCEEEEECH
T ss_conf 8999-99999999981997699951034------48988707999999850888-----899999999983991887083
Q ss_pred --CCCC--CHHHHHHHH
Q ss_conf --3345--579998732
Q gi|254780268|r 134 --SGEV--YPHTAMPIA 146 (443)
Q Consensus 134 --~~~~--~~~ea~~~a 146 (443)
+... +.+.+++|+
T Consensus 81 ~~Yi~lt~d~~~al~f~ 97 (99)
T cd05565 81 KQYIELTRDPDGALKFV 97 (99)
T ss_pred HHEEEEECCHHHHHHHH
T ss_conf 45222115988867775
No 218
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=66.28 E-value=8.8 Score=18.83 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=12.5
Q ss_pred EEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 8875066899999875432125899816884
Q gi|254780268|r 168 IAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 168 vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
.+.+.+++.+.+++|.+.+.+. .-++|+++
T Consensus 131 ~v~~~~~~~~~l~~A~~~A~~g-rpGPV~l~ 160 (574)
T PRK07979 131 LVKQTEDIPQVLKKAFWLAASG-RPGPVVVD 160 (574)
T ss_pred EECCCCCCHHHHHHHHHHHHCC-CCCCEEEC
T ss_conf 8246455789999999998538-99655625
No 219
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=66.16 E-value=11 Score=18.26 Aligned_cols=99 Identities=17% Similarity=0.098 Sum_probs=47.9
Q ss_pred HCCHHHHHHHHHHCCCCEEECCCCHHHCCHHH----HHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 06989999999870998994585313109766----68898459216268989998721899887766422443324333
Q gi|254780268|r 60 YLNIQQIVAACEVTGADAIHPGYGFLSENAKF----AEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG 135 (443)
Q Consensus 60 Yldi~~ii~~a~~~~~daihPGyGfLsEn~~f----a~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~ 135 (443)
+-|++.|++.+++.+.-.. |+-|+.+ ++.+...|...++-|-+..+..-|+.+- .||..
T Consensus 86 r~dl~eIv~~a~~~g~~v~------l~TNG~Ll~k~i~~~~~~~~~~~~VsLDG~~e~HD~~r~-----------~~G~F 148 (318)
T TIGR03470 86 HPEIDEIVRGLVARKKFVY------LCTNALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVC-----------REGVF 148 (318)
T ss_pred CCCHHHHHHHHHHCCCEEE------EECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHC-----------CCCHH
T ss_conf 6479999999997599799------977552009999998518883699980178788668871-----------79779
Q ss_pred CCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHH
Q ss_conf 455799987320033012200023457821688875066899999875
Q gi|254780268|r 136 EVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQAR 183 (443)
Q Consensus 136 ~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~ 183 (443)
...-++...|.+.||+|-+..+ +.--.+++++.+.|+.+.
T Consensus 149 -d~av~aIr~ak~~G~~V~iN~T-------vf~~~n~~~i~~~~d~~~ 188 (318)
T TIGR03470 149 -DRAVEAIREAKARGFRVTTNTT-------LFNDTDPEEVAEFFDYLT 188 (318)
T ss_pred -HHHHHHHHHHHHCCCCEEEEEE-------EECCCCHHHHHHHHHHHH
T ss_conf -9999999999986994679989-------706899999999999998
No 220
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase; InterPro: IPR014092 Members of this family are examples of pyruvate oxidase (1.2.3.3 from EC), an enzyme with FAD and TPP as cofactors that catalyses the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase (1.2.2.2 from EC) as in Escherichia coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name..
Probab=66.04 E-value=11 Score=18.25 Aligned_cols=88 Identities=16% Similarity=0.292 Sum_probs=38.5
Q ss_pred HHHHHHHHHHCCCCEEE--C---CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCC-CC
Q ss_conf 89999999870998994--5---853131097666889845921626898999872189988776642244332433-34
Q gi|254780268|r 63 IQQIVAACEVTGADAIH--P---GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGS-GE 136 (443)
Q Consensus 63 i~~ii~~a~~~~~daih--P---GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~-~~ 136 (443)
+|.=|..|-.++--||. | ||-=-.+|-.-+...... .++-|.++.-+. + ..-++++.+.-|++=.- +.
T Consensus 138 ~DeAiR~Ay~~~GvAVv~IP~dfG~~eI~~~~y~~as~~~~--~~~~P~~~~~~v--~--~~~~~l~aA~~P~iY~G~Ga 211 (577)
T TIGR02720 138 IDEAIRAAYAHNGVAVVTIPVDFGWQEIPDNDYYAASVSEK--LVLLPAPDEEEV--K--KAVKLLKAAKRPVIYVGVGA 211 (577)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHH--H--HHHHHHHHCCCCEEEEEECC
T ss_conf 78999999850798899857877843155434433445411--145888788899--9--99999984189769983075
Q ss_pred CC-HHHHHHHHHCCCCHHHHH
Q ss_conf 55-799987320033012200
Q gi|254780268|r 137 VY-PHTAMPIAKEIGFPVLVK 156 (443)
Q Consensus 137 ~~-~~ea~~~a~~iGyPviiK 156 (443)
.. .+++.+.++++--|+|.=
T Consensus 212 ~~A~e~l~~lS~~lk~Pli~t 232 (577)
T TIGR02720 212 RKAGEELKALSEKLKVPLIST 232 (577)
T ss_pred CHHHHHHHHHHHHCCCCEEEE
T ss_conf 247899999998639884861
No 221
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=65.72 E-value=11 Score=18.20 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=43.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf 8664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r 5 ILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP 80 (443)
Q Consensus 5 iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP 80 (443)
|+|++-|.++..+.+.+++.| +.++|..+++........-.+ +..|.. .|.+ +++-+.-.+++++.-
T Consensus 1 viI~G~g~~G~~la~~L~~~~-~v~vId~d~~~~~~~~~~~~~-vi~GD~------~~~~-~L~~a~i~~a~~vi~ 67 (115)
T pfam02254 1 IIIIGYGRVGRSLAEELREGG-PVVVIDKDPERVEELREEGVP-VVVGDA------TDEE-VLEEAGIEDADAVVA 67 (115)
T ss_pred CEEECCCHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHCCCE-EEEEEC------CCHH-HHHHHCCCCCCEEEE
T ss_conf 999878889999999998089-999999987998778866986-999956------8866-787619202879999
No 222
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=65.62 E-value=11 Score=18.19 Aligned_cols=13 Identities=15% Similarity=0.297 Sum_probs=6.2
Q ss_pred EEEEECCCHHHHH
Q ss_conf 9999559989999
Q gi|254780268|r 384 KLIVHGKNRKECM 396 (443)
Q Consensus 384 KiI~~g~~R~~Ai 396 (443)
++++++++++++-
T Consensus 510 ~IiaRa~~~~~~~ 522 (558)
T PRK10669 510 EIIARAHYDDEVA 522 (558)
T ss_pred EEEEEECCHHHHH
T ss_conf 6999979899999
No 223
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=65.59 E-value=11 Score=18.19 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEE
Q ss_conf 999999999999988651543410245897288349982
Q gi|254780268|r 247 AQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIE 285 (443)
Q Consensus 247 ~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflE 285 (443)
++..+++.+.+.++-+ .|...-.|||-+++|++|+|.
T Consensus 256 P~v~~~L~~~~~~lE~--h~~d~qdiEftie~gkl~~LQ 292 (529)
T PRK05878 256 PAVYDQLMAAARTLER--LGGDVQEIEFTVEDGKLWLLQ 292 (529)
T ss_pred HHHHHHHHHHHHHHHH--HCCCCCEEEECCCCCCEEEEC
T ss_conf 5899999999999998--659834688615678478741
No 224
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=65.34 E-value=11 Score=18.15 Aligned_cols=72 Identities=21% Similarity=0.292 Sum_probs=42.3
Q ss_pred EEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCHHHCCC---CHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCE
Q ss_conf 686644---7099999999888809659998585577187---7675857999189985300069899999998709989
Q gi|254780268|r 4 KILIAN---RGEIALRILRACKELGIPTVAVHSTADSGAM---HVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADA 77 (443)
Q Consensus 4 ~iLian---rGeia~riira~~elGi~tv~v~s~~D~~a~---~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~da 77 (443)
||.+.+ .|-+|-.+...+.++|+..+.++ +.+.... -...-|-.+.+.- +. ..-++-.+++.|++.|+..
T Consensus 2 RI~~~GvG~S~~va~~~~~kl~r~G~~s~~~~-~~~~~~~~~~~i~~~Dv~i~iS~-SG--~T~e~~~~~~~ak~~g~~v 77 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLH-PTEALHGDLGMVTPGDVVIAISN-SG--ETDELLNLLPHLKRRGAPI 77 (128)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHCCCCEEECC-CHHHHHCCCCCCCCCCEEEEEEC-CC--CCHHHHHHHHHHHHCCCCE
T ss_conf 49999426799999999999995799457547-31555411347789999999979-99--9867999999998637858
Q ss_pred EE
Q ss_conf 94
Q gi|254780268|r 78 IH 79 (443)
Q Consensus 78 ih 79 (443)
|.
T Consensus 78 I~ 79 (128)
T cd05014 78 IA 79 (128)
T ss_pred EE
T ss_conf 99
No 225
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=65.26 E-value=1.9 Score=23.49 Aligned_cols=58 Identities=24% Similarity=0.187 Sum_probs=33.5
Q ss_pred CCCEEEECC--CCCCCEECCCCCCC---EEEEEEE-CCCHHHHHHHHHHHHHHCEECCCCCCHH
Q ss_conf 984467776--02387707776843---3899995-5998999999998765408826377888
Q gi|254780268|r 359 GLGIRMDSA--SYQGYTVPSYYDSL---IAKLIVH-GKNRKECMMRLNRALNEIIIDGIKTTIP 416 (443)
Q Consensus 359 ~~gvRvDt~--~~~G~~i~~~yDsm---laKiI~~-g~~R~~Ai~~l~~aL~~~~I~Gv~TN~~ 416 (443)
-.|||.||| .+.+..+...||.+ -.|||+. |-+-+..++.++..=.....-||.||+-
T Consensus 264 ~~GVR~DSGd~~~~~~kvr~~ld~~G~~~~~Ii~Sdg~lde~~i~~l~~~g~~~d~FGvGT~L~ 327 (405)
T COG1488 264 LDGVRLDSGDPRELSEKVRAHLDKLGYDPVKIIVSDGLLDEKIIALLRAFGARNDAFGVGTNLT 327 (405)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHC
T ss_conf 3389779999799999999999975998508998378535899999998178720765655431
No 226
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=64.75 E-value=9.8 Score=18.49 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=33.2
Q ss_pred CHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
Q ss_conf 012200023457821688875066899999875432125899816884434201
Q gi|254780268|r 151 FPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENP 204 (443)
Q Consensus 151 yPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~ 204 (443)
-|=..|-+.+-|.+|. .|++++||.++++.|... +++.+||=-|+..
T Consensus 126 ~~d~~~lA~a~G~~~~-~V~~~~el~~al~~a~~~------~gp~liev~vD~~ 172 (177)
T cd02010 126 NPDFVKYAESFGAKGY-RIESADDLLPVLERALAA------DGVHVIDCPVDYS 172 (177)
T ss_pred CCCHHHHHHHCCCEEE-EECCHHHHHHHHHHHHHC------CCCEEEEEEECCH
T ss_conf 9998999998798799-989999999999999848------9959999998623
No 227
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway . TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process.
Probab=64.73 E-value=11 Score=18.08 Aligned_cols=84 Identities=26% Similarity=0.345 Sum_probs=42.9
Q ss_pred HHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHH---HHHHHHCCC-CCCCCCCCC-----
Q ss_conf 99998709989945853131097666889845921626898999872189988---776642244-332433345-----
Q gi|254780268|r 67 VAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITA---KKTAQQLGI-PVVPGSGEV----- 137 (443)
Q Consensus 67 i~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~---k~~a~~~GV-P~~p~~~~~----- 137 (443)
+++|...++|+||=|.+=| ++..|+++--.. .+||-|....+.+ .+... +..+.-.|+ |+-|-.+..
T Consensus 75 vdlA~~~~ADGvHlGQ~D~--p~~~aR~l~G~~-~iiG~S~~~~~e~-~~a~~C~~~~gaDY~G~Gp~fpT~TK~~~~~~ 150 (210)
T TIGR00693 75 VDLALALGADGVHLGQDDL--PVSEARKLLGPD-KIIGVSTHNLEEL-AEAAACELKEGADYIGVGPIFPTPTKKDAAPP 150 (210)
T ss_pred HHHHHHHCCCEEEECCCCC--CHHHHHHHCCCC-CEEEEEECCHHHH-HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 9999983798776678889--989999853899-5798533798999-99998764078988886371158878898776
Q ss_pred -CHHHHHHHHHCC--CCHHH
Q ss_conf -579998732003--30122
Q gi|254780268|r 138 -YPHTAMPIAKEI--GFPVL 154 (443)
Q Consensus 138 -~~~ea~~~a~~i--GyPvi 154 (443)
..+-+.++++.. +.|++
T Consensus 151 ~g~e~l~~~~~~~~h~~P~V 170 (210)
T TIGR00693 151 VGLELLREIAATSIHDIPIV 170 (210)
T ss_pred CCHHHHHHHHHHCCCCCCEE
T ss_conf 48889999998617887658
No 228
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=64.66 E-value=4.1 Score=21.18 Aligned_cols=38 Identities=26% Similarity=0.411 Sum_probs=27.3
Q ss_pred CEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHH
Q ss_conf 57999189985300069899999998709989945853131
Q gi|254780268|r 46 DESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLS 86 (443)
Q Consensus 46 De~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLs 86 (443)
|+.+..+|.+ ..-|++.+++.+.+.++||+---+|.+.
T Consensus 27 DHG~~~Gp~~---gl~d~~~~i~~~~~~g~dai~~~~G~~~ 64 (266)
T PRK07226 27 DHGVSHGPID---GLVDMRETVNKVAEGGADAVLMHKGLAR 64 (266)
T ss_pred CCCCCCCCCC---CCCCHHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 7775448875---5359999999998639999996767786
No 229
>pfam06973 DUF1297 Domain of unknown function (DUF1297). This family represents the C-terminus (approximately 200 residues) of a number of archaeal proteins of unknown function. One member is annotated as being a possible carboligase enzyme.
Probab=64.56 E-value=11 Score=18.06 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH------CCCCCCEEEEEEC-CCCEEEEECCCCCC
Q ss_conf 445588999999999999988651------5434102458972-88349982276543
Q gi|254780268|r 241 HSPVISAQDRTEIGETCVKAMKKI------DYRGAGTIEFLYE-NGQFYFIEMNTRLQ 291 (443)
Q Consensus 241 Pap~l~~~~~~~i~~~A~~~~~~~------g~~g~~tvEFl~~-~~~~yflEvN~Rlq 291 (443)
|+ .+-+.+..++.+++.+..++. |.-|....|.+++ +.+|++-||.+|+.
T Consensus 87 p~-vlRESLL~~vfe~ge~fV~ask~l~~PG~iGPFcLq~ivt~dle~vvFevS~RI~ 143 (188)
T pfam06973 87 PA-VLRESLLEKVFEMGEKFVEASKELVPPGIIGPFCLQSIVTDDLEFVVFEVSARIV 143 (188)
T ss_pred CC-EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECCCC
T ss_conf 31-4407657999999999999999856998613444667887986199999853004
No 230
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=64.52 E-value=11 Score=18.05 Aligned_cols=118 Identities=19% Similarity=0.297 Sum_probs=75.5
Q ss_pred CHHCCHHHHHHHHHHCCCCEE--ECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 000698999999987099899--458531310976668898459216268989998721899887766422443324333
Q gi|254780268|r 58 DSYLNIQQIVAACEVTGADAI--HPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG 135 (443)
Q Consensus 58 ~sYldi~~ii~~a~~~~~dai--hPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~ 135 (443)
+.+..++.+++..+..++-+| +|-.||+. ..|-.-+|+.|+-| |- ...+-+.+.+.++-+.|+.
T Consensus 98 DPf~~~~~~L~~L~~~gf~gV~NFPTv~~iD--G~~R~~lEetGmG~-~~----------Evemlr~A~~k~l~t~~yV- 163 (276)
T COG5564 98 DPFCRMVDFLKELKTAGFSGVQNFPTVGLID--GRMRASLEETGMGY-GL----------EVEMLREAHAKDLLTTPYV- 163 (276)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC--CHHHHHHHHHCCCH-HH----------HHHHHHHHHHCCCCCCCEE-
T ss_conf 9403189999999855886401577257765--35651488738526-88----------9999999986364334243-
Q ss_pred CCCHHHHHHHHHCCCCHHHHH--CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCC
Q ss_conf 455799987320033012200--02345782168887506689999987543212589
Q gi|254780268|r 136 EVYPHTAMPIAKEIGFPVLVK--ASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFG 191 (443)
Q Consensus 136 ~~~~~ea~~~a~~iGyPviiK--p~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fg 191 (443)
.+.+++.+.+ +.|--+++- -...||..|.+-..+.++..+..+.+..-+.+-+.
T Consensus 164 -~s~~eAqa~~-~aGadiiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~k 219 (276)
T COG5564 164 -FSFEEAQAMT-KAGADIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVRK 219 (276)
T ss_pred -CCHHHHHHHH-HCCCCEEEECCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf -6888999998-7073046503443125501255656788899999999999754301
No 231
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=64.49 E-value=9.8 Score=18.50 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=20.4
Q ss_pred EEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 88875066899999875432125899816884
Q gi|254780268|r 167 RIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 167 ~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
..+++++++.+.+++|.+.|... .-++|+|+
T Consensus 148 ~~v~~~~~i~~~l~~A~~~A~~g-rpGPV~l~ 178 (615)
T PRK07418 148 YVVRDPSDMARIVAEAFHIASSG-RPGPVLID 178 (615)
T ss_pred EEECCHHHHHHHHHHHHHHHHCC-CCCCEEEE
T ss_conf 68547555399999999998507-99876997
No 232
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=64.35 E-value=11 Score=18.03 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=8.4
Q ss_pred HCCHHHHHHHHHHCCCCE
Q ss_conf 069899999998709989
Q gi|254780268|r 60 YLNIQQIVAACEVTGADA 77 (443)
Q Consensus 60 Yldi~~ii~~a~~~~~da 77 (443)
|-|.+.+-++.+.++.+-
T Consensus 26 y~s~~~~~~av~asg~~i 43 (262)
T COG2022 26 YPSPAVLAEAVRASGSEI 43 (262)
T ss_pred CCCHHHHHHHHHHCCCCE
T ss_conf 999899999999727866
No 233
>smart00090 RIO RIO-like kinase.
Probab=64.18 E-value=11 Score=18.01 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEE--EECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 9999999999999886515434102458--972883499822765433201678863
Q gi|254780268|r 247 AQDRTEIGETCVKAMKKIDYRGAGTIEF--LYENGQFYFIEMNTRLQVEHPVTEAIT 301 (443)
Q Consensus 247 ~~~~~~i~~~A~~~~~~~g~~g~~tvEF--l~~~~~~yflEvN~Rlqveh~vte~~t 301 (443)
.+...++.+.-.++.+..+++-.--=|| |+.++++|+|.+--=+.++||-.+..-
T Consensus 151 ~~~~~~il~~~~~~y~~g~lVHgDLSEyNIL~~~~~~~iID~~QaV~~~hp~A~~~L 207 (237)
T smart00090 151 FELYDDILEEMRKLYKEGELVHGDLSEYNILVHDGKVVIIDVSQSVELDHPMALEFL 207 (237)
T ss_pred HHHHHHHHHHHHHHHHHCCEEECCHHHHHHEEECCCEEEEECCCCCCCCCCCHHHHH
T ss_conf 999999999999999827952036046551420896799946752368998889999
No 234
>PRK03202 6-phosphofructokinase; Provisional
Probab=63.97 E-value=12 Score=17.98 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=27.0
Q ss_pred CCEEEEEECCCHH------HHH-HHHHHHHCCCEEEEECCCHH
Q ss_conf 9706866447099------999-99988880965999858557
Q gi|254780268|r 1 MISKILIANRGEI------ALR-ILRACKELGIPTVAVHSTAD 36 (443)
Q Consensus 1 m~~~iLianrGei------a~r-iira~~elGi~tv~v~s~~D 36 (443)
|||||.|...|=. ++| +++++...|++.+.++---+
T Consensus 1 ~~kriaIltsGG~~pGmNa~ir~vv~~a~~~g~~v~G~~~G~~ 43 (323)
T PRK03202 1 MMKKIGVLTSGGDAPGMNAAIRGVVRTAISEGLEVYGIYNGYL 43 (323)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 9866999936888677899999999999978999999916778
No 235
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=63.88 E-value=12 Score=17.97 Aligned_cols=67 Identities=10% Similarity=0.032 Sum_probs=31.2
Q ss_pred ECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 45853131097666889845921626898999872189988776642-24433243334557999873200
Q gi|254780268|r 79 HPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQ-LGIPVVPGSGEVYPHTAMPIAKE 148 (443)
Q Consensus 79 hPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~-~GVP~~p~~~~~~~~ea~~~a~~ 148 (443)
|=|.....+..+|-+.+.++|++++=-+=.+.+ .+...++.+.+ .++++.+.....+..-...+..+
T Consensus 20 ~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~---s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~ 87 (269)
T COG0647 20 YRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTR---SREVVAARLSSLGGVDVTPDDIVTSGDATADYLAK 87 (269)
T ss_pred EECCCCCCHHHHHHHHHHHCCCEEEEEECCCCC---CHHHHHHHHHHHCCCCCCHHHEECHHHHHHHHHHH
T ss_conf 838923815999999999869939999589989---98999999986269988877766389999999985
No 236
>PRK05568 flavodoxin; Provisional
Probab=63.73 E-value=12 Score=17.95 Aligned_cols=102 Identities=21% Similarity=0.290 Sum_probs=55.8
Q ss_pred CEEEEEE------CCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCC---HHHHHHHH--
Q ss_conf 7068664------470999999998888096599985855771877675857999189985300069---89999999--
Q gi|254780268|r 2 ISKILIA------NRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLN---IQQIVAAC-- 70 (443)
Q Consensus 2 ~~~iLia------nrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYld---i~~ii~~a-- 70 (443)
||||+|. |--.+|-.|...+++.|+++-+.+- .|.....+..+| ++.+|.++.....+. +...++-.
T Consensus 1 M~kv~IvY~S~~GnTe~mA~~Iaegl~~~Gv~V~~~~~-~~~~~~di~~~d-~i~~GspT~~~~~~~~~~~~~~~~~~~~ 78 (142)
T PRK05568 1 MKKLNIIYWSGTGNTEAMANLIAEGAKENGLEVKLLNV-SEASVDDVENAD-VVALGSPAMGCEVLEEGEMEPFVEEISG 78 (142)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEE-CCCCHHHHHHCC-EEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 97299999899854999999999999866983999980-049988997399-6899477648766773667999999886
Q ss_pred -HHCCCCEEECCCCHHH-C-CHHHHHHHHHCCCEEECC
Q ss_conf -8709989945853131-0-976668898459216268
Q gi|254780268|r 71 -EVTGADAIHPGYGFLS-E-NAKFAEILEDHHIKFIGP 105 (443)
Q Consensus 71 -~~~~~daihPGyGfLs-E-n~~fa~~~e~~Gi~fIGP 105 (443)
.+.+.-+++.-||.-| | -..+.+.+++.|...++|
T Consensus 79 ~~~gK~~a~FGSyGWg~Ge~v~~~~e~l~~~g~~~v~~ 116 (142)
T PRK05568 79 LVKGKKTLLFGSYGWGTGEWMEDWKERMEGYGANLVND 116 (142)
T ss_pred HCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
T ss_conf 65999899999434898739999999999769978178
No 237
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=63.71 E-value=12 Score=17.95 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=5.9
Q ss_pred HHHHHHHHHHCCCEEEEE
Q ss_conf 999999888809659998
Q gi|254780268|r 14 ALRILRACKELGIPTVAV 31 (443)
Q Consensus 14 a~riira~~elGi~tv~v 31 (443)
|..+.-++..+|.....|
T Consensus 54 gkk~Aa~L~s~G~~a~fv 71 (202)
T COG0794 54 GKKFAARLASTGTPAFFV 71 (202)
T ss_pred HHHHHHHHHCCCCCEEEE
T ss_conf 999999997359955996
No 238
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.68 E-value=12 Score=17.95 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=51.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf 06866447099999999888809659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY 82 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy 82 (443)
|||||.+-|.-.+-+.+-++++|++..+...+++.........-+.+..+ .. . ..-.++|.|..--
T Consensus 13 k~V~V~GlG~sG~a~a~~L~~~G~~v~~~D~~~~~~~~~~~~~~~~~~~~--~~------~------~~~~~~d~vV~SP 78 (487)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSSS--DA------V------QQIADYALVVTSP 78 (487)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCEECCC--CC------H------HHHCCCCEEEECC
T ss_conf 98999915683899999999786979999898257799986599486376--22------6------5646778899899
Q ss_pred CHHHCCHHHHHHHHHCCCEEEC
Q ss_conf 3131097666889845921626
Q gi|254780268|r 83 GFLSENAKFAEILEDHHIKFIG 104 (443)
Q Consensus 83 GfLsEn~~fa~~~e~~Gi~fIG 104 (443)
|.-..|+.+. ...+.|+++++
T Consensus 79 GI~~~~p~l~-~a~~~gi~i~~ 99 (487)
T PRK03369 79 GFPPTAPVLA-AAAAAGVPIWG 99 (487)
T ss_pred CCCCCCHHHH-HHHHCCCCEEE
T ss_conf 5799899999-99988990765
No 239
>PRK05370 argininosuccinate synthase; Validated
Probab=63.63 E-value=12 Score=17.94 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=18.9
Q ss_pred EEEEEECCCHHHHH-HHHHHHHCCCEEEEEC
Q ss_conf 06866447099999-9998888096599985
Q gi|254780268|r 3 SKILIANRGEIALR-ILRACKELGIPTVAVH 32 (443)
Q Consensus 3 ~~iLianrGeia~r-iira~~elGi~tv~v~ 32 (443)
|||..|=.|=.-.. +++=++|.|+++|++.
T Consensus 12 kKVvLAYSGGLDTSv~l~wL~e~g~eVia~t 42 (447)
T PRK05370 12 QRVGIAFSGGLDTSAALLWMRQKGAVPYAYT 42 (447)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 8899995898279999999987598799999
No 240
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=63.61 E-value=9.5 Score=18.58 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=11.9
Q ss_pred CCCCCCCCHHCCHHHHHHHHHHCCCCEE-ECCCCH
Q ss_conf 1899853000698999999987099899-458531
Q gi|254780268|r 51 IGPPSSKDSYLNIQQIVAACEVTGADAI-HPGYGF 84 (443)
Q Consensus 51 i~~~~~~~sYldi~~ii~~a~~~~~dai-hPGyGf 84 (443)
++++..+.+|- ...=++.+-.++|.| +-|.||
T Consensus 30 vp~g~dPH~ye--~~psd~~~l~~ADlvv~~G~~l 62 (266)
T cd01018 30 VPPGSNPHTYE--PKPQQMKKLSEADLYFRIGLGF 62 (266)
T ss_pred CCCCCCCCCCC--CCHHHHHHHHCCCEEEEECCCH
T ss_conf 69997964686--9999999996698999958734
No 241
>pfam02776 TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain.
Probab=63.59 E-value=12 Score=17.93 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=23.9
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 821688875066899999875432125899816884
Q gi|254780268|r 163 GRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 163 G~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
.|-...+.+.+++.+.+++|.+.+... ..++|+|+
T Consensus 124 tk~~~~v~~~~~~~~~i~~A~~~a~~~-~~GPV~l~ 158 (172)
T pfam02776 124 TKWAERVTSPDEIPEALDRAFRTALSG-RPGPVYLE 158 (172)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCC-CCCCEEEE
T ss_conf 668888899999999999999998329-99779999
No 242
>TIGR01116 ATPase-IIA1_Ca calcium-translocating P-type ATPase, SERCA-type; InterPro: IPR005782 This model describes Ca2+ ATPases (3.6.3.8 from EC) from eukaryotes and includes significant representatives from plants. Plasma membrane Ca2+ ATPases are primarily responsible for extrusion of calcium from cytoplasmic milieu to outside, coupled to the hydrolyis of ATP. Besides Ca2+ ATPases, Na+/Ca2+ exchangers are also involved in the maintenance of Ca2+ homestasis in the cell. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=63.38 E-value=12 Score=17.91 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=13.3
Q ss_pred HHHHHHHHCCCCCCE-EEEE--ECCCCEEEEECCCC
Q ss_conf 999886515434102-4589--72883499822765
Q gi|254780268|r 257 CVKAMKKIDYRGAGT-IEFL--YENGQFYFIEMNTR 289 (443)
Q Consensus 257 A~~~~~~~g~~g~~t-vEFl--~~~~~~yflEvN~R 289 (443)
|..+|+.+|.-+..| -||. -+.+-..|-=+.|+
T Consensus 496 A~AicR~IG~lsSfTG~EF~~m~~~~~~~FSR~ePs 531 (800)
T TIGR01116 496 AEAICRRIGILSSFTGREFDEMGPKKALVFSRVEPS 531 (800)
T ss_pred HHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEECCCH
T ss_conf 899976750102420003650060146687605825
No 243
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=63.32 E-value=12 Score=17.90 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=8.4
Q ss_pred CCCCCCEEEECCCCC
Q ss_conf 689984467776023
Q gi|254780268|r 356 APGGLGIRMDSASYQ 370 (443)
Q Consensus 356 ~p~~~gvRvDt~~~~ 370 (443)
.|.|-|+|-|.+.-.
T Consensus 368 ~~aGlgiRed~~~IT 382 (395)
T PHA02117 368 DAVGLGIREDDGRIT 382 (395)
T ss_pred EEEEEEEECCCCCCC
T ss_conf 874899942797335
No 244
>TIGR00715 precor6x_red precorrin-6x reductase; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y , .; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process.
Probab=63.22 E-value=12 Score=17.89 Aligned_cols=90 Identities=17% Similarity=0.294 Sum_probs=55.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEECCCHHHCCCCHHH-CCEEEECCCCCCCCHHCCHHH-HHHHHHHCCCCEE--
Q ss_conf 6866447099999999888809-6599985855771877675-857999189985300069899-9999987099899--
Q gi|254780268|r 4 KILIANRGEIALRILRACKELG-IPTVAVHSTADSGAMHVRL-ADESVCIGPPSSKDSYLNIQQ-IVAACEVTGADAI-- 78 (443)
Q Consensus 4 ~iLianrGeia~riira~~elG-i~tv~v~s~~D~~a~~~~~-ADe~~~i~~~~~~~sYldi~~-ii~~a~~~~~dai-- 78 (443)
+||+.+=-+=+++|++.++.+| ++.+.-.|....+...-.. |.. +.+++ ||-+. |-+..+++++|.|
T Consensus 2 ~vll~GGT~dsr~~~~~L~~~~~~~i~~t~tt~~~~~l~~~~~a~~-v~~ga-------L~~~EGL~~~l~~~~i~~~vD 73 (260)
T TIGR00715 2 SVLLMGGTKDSRAIAKKLRALGDVEILVTVTTEEGKKLLEISQASK-VVTGA-------LDKDEGLRELLKEESIDILVD 73 (260)
T ss_pred EEEEEECCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCC-EEECC-------CCCCCCHHHHHHHCCCCEEEE
T ss_conf 6899717778999997403787589998741577630010037771-58757-------488875378886449638985
Q ss_pred --ECCCCHHHCC-HHHHHHHHHCCCEEEC
Q ss_conf --4585313109-7666889845921626
Q gi|254780268|r 79 --HPGYGFLSEN-AKFAEILEDHHIKFIG 104 (443)
Q Consensus 79 --hPGyGfLsEn-~~fa~~~e~~Gi~fIG 104 (443)
|| |...- ..-.+.|.+.|++||=
T Consensus 74 AtHP---FA~~~t~~a~~vc~E~~~~Yvr 99 (260)
T TIGR00715 74 ATHP---FAAQITKNALEVCKELGIPYVR 99 (260)
T ss_pred CCCH---HHHHHHHHHHHHHHHCCCEEEE
T ss_conf 7973---5899999999999761981799
No 245
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.21 E-value=12 Score=17.89 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=56.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCH
Q ss_conf 86644709999999988880965999858557718776758579991899853000698999999987099899458531
Q gi|254780268|r 5 ILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGF 84 (443)
Q Consensus 5 iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGf 84 (443)
|+....-+-|+.+.+++.+-|++.+=|--. . +.+.--+..+++...+...+. .-|-|=
T Consensus 21 Vvr~~~~e~a~~~a~aL~~gGi~~iEiTlr------------------t---~~a~~~i~~l~~~~~~~~p~~-~iGaGT 78 (223)
T PRK07114 21 VFYHSDIEVAKKVVKACYDGGVRAFEFTNR------------------G---DFAHEVFGELVKYAAKECPEM-ILGVGS 78 (223)
T ss_pred EEEECCHHHHHHHHHHHHHCCCCEEEEECC------------------C---CCHHHHHHHHHHHHHHHCCCC-EEEEEC
T ss_conf 998289999999999999889988999588------------------9---658999999999998668980-896551
Q ss_pred HHCCHHHHHHHHHCCCEEE-CCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf 3109766688984592162-6898999872189988776642244332433345579998732003301
Q gi|254780268|r 85 LSENAKFAEILEDHHIKFI-GPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFP 152 (443)
Q Consensus 85 LsEn~~fa~~~e~~Gi~fI-GPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyP 152 (443)
. -+.+-++.+.++|-.|+ -|.. |... -+.+.+.|+|.+||. .++.|+..+- +.|+.
T Consensus 79 V-l~~~~~~~a~~aGA~FiVSP~~-------~~~v-~~~~~~~~~~~iPGv--~TptEi~~A~-~~G~~ 135 (223)
T PRK07114 79 I-VDAATAALYIQLGANFVVGPLF-------NEDI-AKVCNRRKIPYSPGC--GSVSEIGFAE-ELGCE 135 (223)
T ss_pred C-CCHHHHHHHHHCCCCEEECCCC-------CHHH-HHHHHHCCCCCCCCC--CCHHHHHHHH-HCCCC
T ss_conf 8-8999999999859989999999-------9999-999998399753731--9999999999-87999
No 246
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=63.12 E-value=12 Score=17.88 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=23.2
Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 21688875066899999875432125899816884
Q gi|254780268|r 164 RGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 164 ~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
|-...+.+.+++.+.+++|.+.+... ..++|+++
T Consensus 130 k~~~~v~~~~~~~~~~~~A~~~A~~~-r~GPV~l~ 163 (562)
T PRK06048 130 KHNYLVQDAKDLPRIVKEAFHIASTG-RPGPVLID 163 (562)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHC-CCCCEEEE
T ss_conf 46068489999999999999999648-99767997
No 247
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=62.84 E-value=12 Score=17.84 Aligned_cols=32 Identities=19% Similarity=0.420 Sum_probs=28.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 06866447099999999888809659998585
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAVHST 34 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v~s~ 34 (443)
|||.|++-|.-.+=.+|+|.|.|++.++.-..
T Consensus 2 KrVAIIGAG~SGL~a~K~lle~G~~~~~FE~~ 33 (532)
T pfam00743 2 KKVAVIGAGVSGLSSIKCCLEEGLEPTCFERS 33 (532)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 87999897299999999998779982999779
No 248
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=62.48 E-value=12 Score=17.80 Aligned_cols=31 Identities=35% Similarity=0.434 Sum_probs=13.5
Q ss_pred CEEECCCHHHHHHHHCHHHHHHHHHHCCCCC
Q ss_conf 2162689899987218998877664224433
Q gi|254780268|r 100 IKFIGPSSEHIKIMGDKITAKKTAQQLGIPV 130 (443)
Q Consensus 100 i~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~ 130 (443)
+++|||..-.....+|=...|+++++.|+++
T Consensus 165 vNiig~~~~g~~~~gD~~eikrll~~~Gi~v 195 (430)
T cd01981 165 VNLIGPSSLGFHNRHDCRELKRLLHTLGIEV 195 (430)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 6998247677777568999999999839918
No 249
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=62.37 E-value=11 Score=18.12 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=23.1
Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 21688875066899999875432125899816884
Q gi|254780268|r 164 RGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 164 ~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
|-...+.+++++.+.+++|.+.|.+. .-++|+|+
T Consensus 127 k~~~~v~~~~~i~~~l~~A~~~A~~~-rpGPV~i~ 160 (574)
T PRK06882 127 KHSFIVKKAEDIPSTIKKAFYIASTG-RPGPVVID 160 (574)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHCC-CCCCEEEE
T ss_conf 04468489999999999999998638-99877998
No 250
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=62.32 E-value=12 Score=17.78 Aligned_cols=141 Identities=21% Similarity=0.251 Sum_probs=81.8
Q ss_pred CCEEEEEECCCHHHHH-HHHHHHHCC--CEEEEECCC-HHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCC
Q ss_conf 9706866447099999-999888809--659998585-577187767585799918998530006989999999870998
Q gi|254780268|r 1 MISKILIANRGEIALR-ILRACKELG--IPTVAVHST-ADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGAD 76 (443)
Q Consensus 1 m~~~iLianrGeia~r-iira~~elG--i~tv~v~s~-~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~d 76 (443)
|.-|+.|.+-|-|+-+ .+++++.++ .+.+++++. +++ +. ..|. .|.+. .+|.|.+++++ ...+|
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~-a~--~~a~-~~~~~-----~~~~~~~~ll~---~~~iD 69 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPER-AE--AFAE-EFGIA-----KAYTDLEELLA---DPDID 69 (342)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHH-HH--HHHH-HCCCC-----CCCCCHHHHHC---CCCCC
T ss_conf 93279998987678888899997388746999996499899-99--9999-81997-----45299999945---99998
Q ss_pred EEE---CCCCHHHCCHHHHHHHHHCCCEEEC--CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC---CCHHHHHHHHH-
Q ss_conf 994---5853131097666889845921626--89899987218998877664224433243334---55799987320-
Q gi|254780268|r 77 AIH---PGYGFLSENAKFAEILEDHHIKFIG--PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE---VYPHTAMPIAK- 147 (443)
Q Consensus 77 aih---PGyGfLsEn~~fa~~~e~~Gi~fIG--Ps~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~---~~~~ea~~~a~- 147 (443)
+|. |-+ -..+.+...-++|...+- |-..+++.+ ....+++++.|+...-+... +....+++..+
T Consensus 70 ~V~Iatp~~----~H~~~a~~AL~aGkhVl~EKPla~t~~ea---~~l~~~a~~~g~~l~v~~~~Rf~p~~~~~k~li~~ 142 (342)
T COG0673 70 AVYIATPNA----LHAELALAALEAGKHVLCEKPLALTLEEA---EELVELARKAGVKLMVGFNRRFDPAVQALKELIDS 142 (342)
T ss_pred EEEEECCCH----HHHHHHHHHHHCCCEEEEECCCCCCHHHH---HHHHHHHHHCCCEEEEEEHHHCCHHHHHHHHHHHC
T ss_conf 899969806----77999999997799699928998999999---99999999759949998846549899999999865
Q ss_pred -CCCCHHHHHCCCC
Q ss_conf -0330122000234
Q gi|254780268|r 148 -EIGFPVLVKASAG 160 (443)
Q Consensus 148 -~iGyPviiKp~~g 160 (443)
++|-+..++..+.
T Consensus 143 g~iG~i~~~~~~~~ 156 (342)
T COG0673 143 GALGEVVSVQASFS 156 (342)
T ss_pred CCCCCEEEEEEEEC
T ss_conf 98741599999711
No 251
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=61.67 E-value=13 Score=17.70 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=29.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEECC-CHHH
Q ss_conf 0686644709999999988880965999858-5577
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAVHS-TADS 37 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v~s-~~D~ 37 (443)
|++||.+-|-.|.-++-++.++|++.|.|++ +.++
T Consensus 20 k~vlIlGaGGaarai~~aL~~~g~~~I~i~nR~~~r 55 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEK 55 (155)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 999998675899999999997199822886089999
No 252
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.53 E-value=13 Score=17.68 Aligned_cols=131 Identities=16% Similarity=0.154 Sum_probs=73.0
Q ss_pred EEEEE-ECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf 06866-44709999999988880965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r 3 SKILI-ANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG 81 (443)
Q Consensus 3 ~~iLi-anrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG 81 (443)
.+|+| |..=++--.|.|.+-++|++++.|.+-+=..+ .-..-...+.-.+....+.| |++.|+. -|-|--
T Consensus 2 ~~I~VDADACPVk~~i~r~A~r~~~~v~~Van~~~~~~-~~~~i~~v~V~~g~DaaD~~-----Iv~~a~~--gDlVVT- 72 (150)
T COG1671 2 MTIWVDADACPVKDEIYRVAERMGLKVTFVANFPHRVP-PSPEIRTVVVDAGFDAADDW-----IVNLAEK--GDLVVT- 72 (150)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHCCEEEEEECCCCCCC-CCCCEEEEEECCCCCHHHHH-----HHHHCCC--CCEEEE-
T ss_conf 56998078785189999999996975999917875689-99853689955773328899-----9983778--998997-
Q ss_pred CCHHHCCHHHHHHHHHCCCEEECCC-----HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 5313109766688984592162689-----899987218998877664224433243334557999873200
Q gi|254780268|r 82 YGFLSENAKFAEILEDHHIKFIGPS-----SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKE 148 (443)
Q Consensus 82 yGfLsEn~~fa~~~e~~Gi~fIGPs-----~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~ 148 (443)
-+--||..+-+.|...++|+ ++.|..+-+.-.+..-+++.|..+ .|-...+..+...|++.
T Consensus 73 -----~Di~LA~~ll~kg~~v~~prGr~y~~~nI~~~L~~R~~~~~lR~~G~~~-~gp~~~~~rDr~~F~~~ 138 (150)
T COG1671 73 -----ADIPLASLLLDKGAAVLNPRGRLYTEENIGERLAMRDFMAKLRRQGKKT-GGPAAFSSRDRSRFANA 138 (150)
T ss_pred -----CCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHH
T ss_conf -----7647899999669778899986567767999998788889999845536-89876576789999999
No 253
>PRK06857 consensus
Probab=61.32 E-value=13 Score=17.66 Aligned_cols=118 Identities=23% Similarity=0.396 Sum_probs=68.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEC-CCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 8664470999999998888096599985-855771877675857999189985300069899999998709989945853
Q gi|254780268|r 5 ILIANRGEIALRILRACKELGIPTVAVH-STADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG 83 (443)
Q Consensus 5 iLianrGeia~riira~~elGi~tv~v~-s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG 83 (443)
|+-...-+-+.++++++.+-|++.+=|- +.+ +.-..|+..+++..|.+ -|-|
T Consensus 17 Vir~~~~~~a~~~~~al~~gGi~~iEiTlrt~--------------------------~a~~~I~~l~~~~p~~~-vGaG 69 (209)
T PRK06857 17 VIAIDDAEDILPLAKVLAENGLPVAEITFRSA--------------------------AAAEAIRLLREAYPDML-IGAG 69 (209)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECCCC--------------------------CHHHHHHHHHHHCCCCE-EEEE
T ss_conf 99759999999999999987998899958993--------------------------29999999997589948-9999
Q ss_pred HHHCCHHHHHHHHHCCCEEE-CCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHH-HHCCC
Q ss_conf 13109766688984592162-689--899987218998877664224433243334557999873200330122-00023
Q gi|254780268|r 84 FLSENAKFAEILEDHHIKFI-GPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVL-VKASA 159 (443)
Q Consensus 84 fLsEn~~fa~~~e~~Gi~fI-GPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPvi-iKp~~ 159 (443)
=. -+.+-++.+.++|..|+ -|. ++.+ +.+.+.++|.+||. .++.|+..+. +.|+.++ +=|+.
T Consensus 70 TV-~~~e~~~~a~~aGA~FiVSP~~~~~v~----------~~a~~~~i~~iPGv--~TpsEi~~A~-~~G~~~vKlFPA~ 135 (209)
T PRK06857 70 TV-LTPEQVDAAKEAGADFIVSPGFNPNTV----------KYCQQLNIPIVPGV--NNPSLVEQAL-EMGLTTLKFFPAE 135 (209)
T ss_pred EC-CCHHHHHHHHHCCCCEEECCCCCHHHH----------HHHHHCCCCEECCC--CCHHHHHHHH-HCCCCEEEECCCC
T ss_conf 37-679999999983999999089999999----------99997499654787--9999999999-8799989978662
Q ss_pred CCCC
Q ss_conf 4578
Q gi|254780268|r 160 GGGG 163 (443)
Q Consensus 160 gGGG 163 (443)
..||
T Consensus 136 ~~gG 139 (209)
T PRK06857 136 ASGG 139 (209)
T ss_pred CCCC
T ss_conf 1266
No 254
>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.
Probab=61.26 E-value=13 Score=17.65 Aligned_cols=53 Identities=17% Similarity=0.339 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEE--EECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 999999999999886515434102458--97288349982276543320167886
Q gi|254780268|r 248 QDRTEIGETCVKAMKKIDYRGAGTIEF--LYENGQFYFIEMNTRLQVEHPVTEAI 300 (443)
Q Consensus 248 ~~~~~i~~~A~~~~~~~g~~g~~tvEF--l~~~~~~yflEvN~Rlqveh~vte~~ 300 (443)
+...++.+...++....|+.-.--=|| |+.++++|+|.+--=+.++||-.++.
T Consensus 128 ~~~~~~i~~i~~l~~~~gLVHgDlSEyNil~~~~~~~iID~~QaV~~~hp~a~e~ 182 (197)
T cd05146 128 NAYYQVLSMMKQLYKECNLVHADLSEYNMLWHDGKVWFIDVSQSVEPTHPHGLEF 182 (197)
T ss_pred HHHHHHHHHHHHHHHHCCCEECCCCHHHEEECCCCEEEEECCCCCCCCCCCHHHH
T ss_conf 9999999999999998395012410330164279879996774015789788999
No 255
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family; InterPro: IPR006515 These eukaryotic proteins recognize the poly-A of mRNA and consist of four tandem RNA recognition domains at the N terminus followed by a PABP-specific domain at the C terminus. The protein is involved in the transport of mRNAs from the nucleus to the cytoplasm . There are four paralogs in Homo sapiens which are expressed in testis , platelets (Q13310 from SWISSPROT ), broadly expressed (P11940 from SWISSPROT ) and of unknown tissue range (Q15097 from SWISSPROT). ; GO: 0003723 RNA binding.
Probab=61.15 E-value=6.9 Score=19.58 Aligned_cols=109 Identities=24% Similarity=0.385 Sum_probs=68.7
Q ss_pred CCCHHH-CCHHHH-HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC-----------CCHHHHHHHHH
Q ss_conf 853131-097666-88984592162689899987218998877664224433243334-----------55799987320
Q gi|254780268|r 81 GYGFLS-ENAKFA-EILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE-----------VYPHTAMPIAK 147 (443)
Q Consensus 81 GyGfLs-En~~fa-~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~-----------~~~~ea~~~a~ 147 (443)
|||+.+ .|++=| +++|..|.+.|+ .+.||+|. ..-=|-.+-++. ++..-+.+...
T Consensus 43 GYgYvNF~n~~DAerAle~~N~~~l~--~k~iRiMw----------s~RDPs~R~SG~GNvFvKNLd~SvDnkaL~d~Fs 110 (860)
T TIGR01628 43 GYGYVNFQNPADAERALETLNFKLLK--GKPIRIMW----------SQRDPSLRRSGVGNVFVKNLDKSVDNKALFDTFS 110 (860)
T ss_pred HHEEECCCCHHHHHHHHHHHCCCCCC--CEEEEEEE----------ECCCHHHCCCCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 00132568875799999980884038--76589840----------0488334148971078862887725356898875
Q ss_pred CCCCHHHHH-CCCCCC-CCEEEEEEECHH--HHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
Q ss_conf 033012200-023457-821688875066--899999875432125899816884434201
Q gi|254780268|r 148 EIGFPVLVK-ASAGGG-GRGMRIAYSEND--LSEAIDQARSEALAAFGNDAVYIEKYLENP 204 (443)
Q Consensus 148 ~iGyPviiK-p~~gGG-G~Gi~vv~~~~e--l~~a~~~a~~ea~~~fgd~~vlvEk~i~~~ 204 (443)
++|-=+=+| +.+.-| |||=-.|+-++| ..+|++..= -....|..|+|++|+...
T Consensus 111 ~FG~IlSCKVa~dE~GkSrGYgFV~fE~EesA~~AI~k~N---G~~~~d~~v~Vg~f~~~~ 168 (860)
T TIGR01628 111 KFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIEKLN---GMLLNDKEVYVGRFIKKK 168 (860)
T ss_pred HCCCEEEEEEEECCCCCCCCCCEEECCCHHHHHHHHHHHH---HHHHHCCCHHHCCCCCCH
T ss_conf 1586577887762686003541340231788999998860---350110001001365513
No 256
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=61.14 E-value=13 Score=17.64 Aligned_cols=13 Identities=8% Similarity=0.036 Sum_probs=6.0
Q ss_pred CCCCCEEEEECCC
Q ss_conf 1244215886689
Q gi|254780268|r 346 PNPGEITYFHAPG 358 (443)
Q Consensus 346 Ps~G~i~~~~~p~ 358 (443)
...|++..+-.+.
T Consensus 263 ~~gG~iv~vG~~~ 275 (349)
T TIGR03201 263 SHGGTLVVVGYTM 275 (349)
T ss_pred CCCCEEEEECCCC
T ss_conf 5897999975059
No 257
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=61.08 E-value=13 Score=17.63 Aligned_cols=72 Identities=18% Similarity=0.452 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 98999999987099899458531310976668898459216268989998721899887766422443324333455799
Q gi|254780268|r 62 NIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHT 141 (443)
Q Consensus 62 di~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~e 141 (443)
+++..+ .|.+.|+|=| +|+..+..-|++ ||...++.. .+..++|
T Consensus 10 s~e~a~-~A~~~GAdRI-----------ELCs~L~~GGlT---PS~g~i~~~---------~~~~~iP------------ 53 (248)
T PRK11572 10 SMECAL-TAQQNGADRI-----------ELCAAPKEGGLT---PSLGVLKSV---------RERVTIP------------ 53 (248)
T ss_pred CHHHHH-HHHHCCCCEE-----------EECCCCCCCCCC---CCHHHHHHH---------HHHCCCC------------
T ss_conf 999999-9998399989-----------974787668979---999999999---------9866997------------
Q ss_pred HHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 9873200330122000234578216888750668999998754
Q gi|254780268|r 142 AMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARS 184 (443)
Q Consensus 142 a~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ 184 (443)
-=+||+|..|. .+++.+|+....+.+..
T Consensus 54 ---------V~vMIRPR~Gd------F~Ys~~E~~~M~~dI~~ 81 (248)
T PRK11572 54 ---------VHPIIRPRGGD------FCYSDGEFAAMLEDIRT 81 (248)
T ss_pred ---------EEEEEEECCCC------CCCCHHHHHHHHHHHHH
T ss_conf ---------38999426998------86798999999999999
No 258
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site , . The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide , . Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. This entry represents the alpha subunit, which is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha.; GO: 0018822 nitrile hydratase activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process.
Probab=61.04 E-value=11 Score=18.19 Aligned_cols=126 Identities=16% Similarity=0.242 Sum_probs=71.1
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCH-HHH
Q ss_conf 2365665421135622554034455889999999999999886515434102458972883499822765433201-678
Q gi|254780268|r 220 IHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHP-VTE 298 (443)
Q Consensus 220 v~l~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~-vte 298 (443)
..+++.|-|-|. -=||| |-| .++++-++.|.+.|..+++.+||.|- ...++..+|=.+- |-|= |=.
T Consensus 25 ~s~yene~gP~~-GAkvV--Aka-WVDPefr~~Ll~DaTaAca~~Gy~G~-------Qge~ivalent~~--v~nvvVCt 91 (186)
T TIGR01323 25 TSLYENEVGPEN-GAKVV--AKA-WVDPEFRKLLLKDATAACAELGYAGE-------QGEEIVALENTSG--VHNVVVCT 91 (186)
T ss_pred HHHHHHCCCCCC-CCEEE--EEC-CCCHHHHHHHHHHHHHHHHHCCCCCC-------CCCEEEEEECCCC--EEEEEEEC
T ss_conf 888753158566-76689--864-66978999886437899997188754-------6134889862896--32788841
Q ss_pred HHHCC--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC-CCCCEEEEECCCCCCEEE-ECCCCCCCEE
Q ss_conf 86325--6201123222102222211333320124533024566221111-244215886689984467-7760238770
Q gi|254780268|r 299 AITGI--DLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIP-NPGEITYFHAPGGLGIRM-DSASYQGYTV 374 (443)
Q Consensus 299 ~~tgv--dlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri~aEdp~~f~P-s~G~i~~~~~p~~~gvRv-Dt~~~~G~~i 374 (443)
+++=. +. +|-|... -++...-+|+-++ |++-+- ..| |..|+.--||| ||+.+.=|-|
T Consensus 92 LCSCypWPV--------LGLPP~W------YK~~eyRaR~Vrd-pRgVL~refG----~~~p~dv~irvWDsSaE~RY~V 152 (186)
T TIGR01323 92 LCSCYPWPV--------LGLPPEW------YKSFEYRARVVRD-PRGVLKREFG----YELPDDVEIRVWDSSAELRYLV 152 (186)
T ss_pred CCCCCCCCC--------CCCCCCC------CCCCCHHEEEEEC-CCCCHHHHCC----CCCCCCCEEEEEECCHHHHHCC
T ss_conf 137888888--------8878520------0440010001126-7600134527----9997970798841641011000
Q ss_pred CCC
Q ss_conf 777
Q gi|254780268|r 375 PSY 377 (443)
Q Consensus 375 ~~~ 377 (443)
=|.
T Consensus 153 lPq 155 (186)
T TIGR01323 153 LPQ 155 (186)
T ss_pred CCC
T ss_conf 368
No 259
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=60.93 E-value=13 Score=17.61 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=36.7
Q ss_pred EEECCCHHHHHHHHCHHHHHHHHH----HCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHH
Q ss_conf 162689899987218998877664----2244332433345579998732003301220002345782168887506689
Q gi|254780268|r 101 KFIGPSSEHIKIMGDKITAKKTAQ----QLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLS 176 (443)
Q Consensus 101 ~fIGPs~~ai~~~gDK~~~k~~a~----~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~ 176 (443)
.|+||+---=-.+-=|..++-.++ +.|+=|...+-.--.++++.+++-+|.| +.+|++++||.
T Consensus 180 alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvP-------------v~vv~~~~eL~ 246 (404)
T PRK06995 180 ALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP-------------VHAVKDAADLR 246 (404)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCE-------------EEEECCHHHHH
T ss_conf 98668887637589999999999838983799976875478999999999875955-------------99959999999
Q ss_pred HHHHHHH
Q ss_conf 9999875
Q gi|254780268|r 177 EAIDQAR 183 (443)
Q Consensus 177 ~a~~~a~ 183 (443)
.+++...
T Consensus 247 ~aL~~l~ 253 (404)
T PRK06995 247 LALAELR 253 (404)
T ss_pred HHHHHHC
T ss_conf 9999708
No 260
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=60.87 E-value=11 Score=18.15 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=13.1
Q ss_pred HHHHHHHHCCCCCCEEEEE
Q ss_conf 9998865154341024589
Q gi|254780268|r 257 CVKAMKKIDYRGAGTIEFL 275 (443)
Q Consensus 257 A~~~~~~~g~~g~~tvEFl 275 (443)
-.+..+..||.|..++|..
T Consensus 231 il~~L~~~gY~G~vsvEl~ 249 (276)
T PRK09856 231 LMRDIIDRGYEGYCTVELV 249 (276)
T ss_pred HHHHHHHCCCCCEEEEEEC
T ss_conf 9999998599815999972
No 261
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=60.86 E-value=13 Score=17.64 Aligned_cols=57 Identities=19% Similarity=0.305 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHCCCCEEEC--CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCC
Q ss_conf 9899999998709989945--85313109766688984592162689899987218998877664224433
Q gi|254780268|r 62 NIQQIVAACEVTGADAIHP--GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPV 130 (443)
Q Consensus 62 di~~ii~~a~~~~~daihP--GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~ 130 (443)
|...+.+.|++.++..-+= =. --|+.+|+.+.+.|+. ..-++ |=..+ +.+.++|+|+
T Consensus 41 NAr~l~~~A~~~gi~Ly~MtKQ~---GRNP~l~~~l~~~G~~----g~VaV----D~kEA-~~l~~~gl~v 99 (382)
T cd06811 41 NARLLAETAEKYGIELYFMTKQF---GRNPFLARALLEAGIP----GAVAV----DFKEA-RALHEAGLPL 99 (382)
T ss_pred HHHHHHHHHHHCCCEEEEEEECC---CCCHHHHHHHHHCCCC----CEEEE----EHHHH-HHHHHCCCCC
T ss_conf 99999999997396899996105---8998999999973998----56896----09999-9999859983
No 262
>TIGR01885 Orn_aminotrans ornithine--oxo-acid transaminase; InterPro: IPR010164 Ornithine aminotransferase catalyses the conversion of L-ornithine and a 2-oxo acid to L-glutamate 5-semialdehyde and an L-amino acid. This enzyme is found in low-GC bacteria, where it is responsible for the fourth step in arginine biosynthesis, and in the mitochondrial matrix of eukaryotes, where it controls L-ornithine levels in tissues. In human hereditary ornithine aminotransferase deficiency, the elevated levels of intraocular concentrations of ornithine are responsible for gyrate atrophy, which affects the CNS and peripheral nervous system ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding.
Probab=60.74 E-value=13 Score=17.59 Aligned_cols=100 Identities=21% Similarity=0.333 Sum_probs=59.9
Q ss_pred CEEEEEECCCHHHHH-HHHHHHHCCCEEEEEC--------CCHH---HCCCCHHH-CCE-EEEC--CCCCC---------
Q ss_conf 706866447099999-9998888096599985--------8557---71877675-857-9991--89985---------
Q gi|254780268|r 2 ISKILIANRGEIALR-ILRACKELGIPTVAVH--------STAD---SGAMHVRL-ADE-SVCI--GPPSS--------- 56 (443)
Q Consensus 2 ~~~iLianrGeia~r-iira~~elGi~tv~v~--------s~~D---~~a~~~~~-ADe-~~~i--~~~~~--------- 56 (443)
+++||--|-|-=|+. ++|.||++||+.--|- +.-. +.-..+.. +|+ -+.. +|-.+
T Consensus 101 ~~~vL~mNTGaEAvEtA~KLAR~WgY~~K~ip~~kA~ii~~~GNFhGRTlgA~S~Std~e~~k~~FGPflPnvasGhgf~ 180 (426)
T TIGR01885 101 YEKVLPMNTGAEAVETALKLARKWGYEVKGIPRNKAKIIAASGNFHGRTLGAVSASTDSETSKKGFGPFLPNVASGHGFR 180 (426)
T ss_pred CCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCC
T ss_conf 10560456873479999999997441357855762389985388733035443202672120067879677433578521
Q ss_pred CCHHCCHHHHHHHHHHC-----CCCE------------EECCCCHHHCCHHHHHHHHHCCCEEEC
Q ss_conf 30006989999999870-----9989------------945853131097666889845921626
Q gi|254780268|r 57 KDSYLNIQQIVAACEVT-----GADA------------IHPGYGFLSENAKFAEILEDHHIKFIG 104 (443)
Q Consensus 57 ~~sYldi~~ii~~a~~~-----~~da------------ihPGyGfLsEn~~fa~~~e~~Gi~fIG 104 (443)
.-.|=|+|++.++..+. ++=| |.|--|||. ..++.|.+.|+-||=
T Consensus 181 ~iPYgd~EAl~~aL~~P~~~GDnVAA~i~EPIQGEAGvvvPp~gYl~---~V~~LC~~~nVLfI~ 242 (426)
T TIGR01885 181 KIPYGDLEALRKALQDPKKTGDNVAAFILEPIQGEAGVVVPPPGYLP---GVRALCKEHNVLFIA 242 (426)
T ss_pred CCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEECCCCHHH---HHHHHHHHCCCEEEE
T ss_conf 15588878999997275778886899995040354436848963578---999986551872898
No 263
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=60.57 E-value=13 Score=17.57 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=10.8
Q ss_pred EEECHHHHHHHHHHHHH
Q ss_conf 87506689999987543
Q gi|254780268|r 169 AYSENDLSEAIDQARSE 185 (443)
Q Consensus 169 v~~~~el~~a~~~a~~e 185 (443)
|.+.++|++..+.|.+.
T Consensus 192 V~s~eel~~i~~~a~~~ 208 (409)
T PRK07590 192 VATKEQLKAWVDYAKAN 208 (409)
T ss_pred CCCHHHHHHHHHHHHHC
T ss_conf 57999999999999874
No 264
>TIGR00789 flhB_rel FlhB domain protein; InterPro: IPR004683 This group describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set..
Probab=60.29 E-value=9 Score=18.74 Aligned_cols=57 Identities=26% Similarity=0.439 Sum_probs=33.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHH--CCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHH
Q ss_conf 6866447099999999888809659998585577--187767585799918998530006989999999
Q gi|254780268|r 4 KILIANRGEIALRILRACKELGIPTVAVHSTADS--GAMHVRLADESVCIGPPSSKDSYLNIQQIVAAC 70 (443)
Q Consensus 4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~--~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a 70 (443)
+|+=-+.||+|-|||+.||+.||- +..|++- .-.++.+-| .-+++-|.-+-+|-...
T Consensus 19 ~V~AsG~GevA~~II~~AK~~gip---i~ed~~L~~~L~~l~l~~-------~IPee~Y~~Va~iFaFl 77 (84)
T TIGR00789 19 KVVASGVGEVAEKIIELAKKHGIP---IKEDEDLVDVLLKLDLDD-------EIPEELYEVVAEIFAFL 77 (84)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHCCCCC-------CCCHHHHHHHHHHHHHH
T ss_conf 577416765788999999763899---765828999874405457-------68857889999999999
No 265
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=60.26 E-value=13 Score=17.53 Aligned_cols=97 Identities=15% Similarity=0.294 Sum_probs=57.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCH
Q ss_conf 86644709999999988880965999858557718776758579991899853000698999999987099899458531
Q gi|254780268|r 5 ILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGF 84 (443)
Q Consensus 5 iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGf 84 (443)
|.|.+-|--.|.+.-++-+||.+|..+-.+.|+...-. ..- .||+.. .. .| . ..+||+-
T Consensus 9 VIViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig~ms--CNP--siGGi~-KG------~l---v--rEidaLg----- 67 (621)
T PRK05192 9 VIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMS--CNP--AIGGIA-KG------HL---V--REIDALG----- 67 (621)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEE--CCC--CCCCCC-HH------HH---H--HHHHHCC-----
T ss_conf 89989757999999999967996799965813115860--452--036721-65------76---6--6877536-----
Q ss_pred HHCCHHHHHHHHHCCCEE------ECCCHHHHHHHHCHHHHHHHHHHC
Q ss_conf 310976668898459216------268989998721899887766422
Q gi|254780268|r 85 LSENAKFAEILEDHHIKF------IGPSSEHIKIMGDKITAKKTAQQL 126 (443)
Q Consensus 85 LsEn~~fa~~~e~~Gi~f------IGPs~~ai~~~gDK~~~k~~a~~~ 126 (443)
...++.+.++||.| =||..++.+.--||...++.+++.
T Consensus 68 ----G~mg~~aD~~~Iq~r~LN~sKGpAv~~~RaQ~Dr~~Y~~~~~~~ 111 (621)
T PRK05192 68 ----GEMGKAADKTGIQFRMLNTSKGPAVRAPRAQADRKLYRAAMREI 111 (621)
T ss_pred ----CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf ----89999998876168761588883006739888599999999999
No 266
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=59.60 E-value=14 Score=17.46 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=6.4
Q ss_pred EEECCCCCCEEE
Q ss_conf 886689984467
Q gi|254780268|r 353 YFHAPGGLGIRM 364 (443)
Q Consensus 353 ~~~~p~~~gvRv 364 (443)
.+..|.+||.-+
T Consensus 345 ~~~~p~~PGlGv 356 (372)
T COG4948 345 LVHVPDGPGLGV 356 (372)
T ss_pred EEECCCCCCCCE
T ss_conf 696899991576
No 267
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=59.56 E-value=14 Score=17.45 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=10.4
Q ss_pred EEECCCCEEEE--ECCCCCCCCCHH
Q ss_conf 89728834998--227654332016
Q gi|254780268|r 274 FLYENGQFYFI--EMNTRLQVEHPV 296 (443)
Q Consensus 274 Fl~~~~~~yfl--EvN~Rlqveh~v 296 (443)
|++.-..+|++ ++++=-.-+||-
T Consensus 327 yVv~l~~~~~ls~~~q~~~~F~HPn 351 (447)
T pfam05185 327 YVVRLHSYYKLSTEVQECWSFSHPN 351 (447)
T ss_pred EEEEEEEECCCCCCCCCCEEEECCC
T ss_conf 7998211022589873552767889
No 268
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=59.36 E-value=11 Score=18.18 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=12.8
Q ss_pred HHHHHHHHHCCCEEEEECCC
Q ss_conf 99999888809659998585
Q gi|254780268|r 15 LRILRACKELGIPTVAVHST 34 (443)
Q Consensus 15 ~riira~~elGi~tv~v~s~ 34 (443)
--+++.++++|+++|--..-
T Consensus 7 d~i~~~L~~~Gv~~iFgvpG 26 (521)
T PRK07092 7 DATIDLLRRFGITTVFGNPG 26 (521)
T ss_pred HHHHHHHHHCCCCEEEECCC
T ss_conf 99999999879999998887
No 269
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=59.19 E-value=14 Score=17.41 Aligned_cols=118 Identities=15% Similarity=0.168 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHH
Q ss_conf 99999998888096599985855771877675857999189985300069899999998709989945853131097666
Q gi|254780268|r 13 IALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAKFA 92 (443)
Q Consensus 13 ia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa 92 (443)
-..++|+.++++|+..|.+ -|+.+. -+-|+..|++.+++.|.....--=|.| =+.+.+
T Consensus 51 e~~~~id~l~~~Gv~~v~~-------------------tGGEPl--lr~D~~ei~~~a~~~G~~~~l~TNG~l-it~~~a 108 (375)
T PRK05301 51 EWIRVLREARALGVLQLHF-------------------SGGEPL--LRKDLEELVAHARRLGLYTNLITSGVG-LTEARL 108 (375)
T ss_pred HHHHHHHHHHHCCCCEEEE-------------------CCCCCC--CCCCHHHHHHHHHHCCCEEEEEECCCC-CCHHHH
T ss_conf 9999999999869988996-------------------186524--566899999999976975899606745-579999
Q ss_pred HHHHHCCCEEE-----CCCHHHHHHHHC-H------HHHHHHHHHCCCCCCCCCCC-----CCHHHHHHHHHCCCCH
Q ss_conf 88984592162-----689899987218-9------98877664224433243334-----5579998732003301
Q gi|254780268|r 93 EILEDHHIKFI-----GPSSEHIKIMGD-K------ITAKKTAQQLGIPVVPGSGE-----VYPHTAMPIAKEIGFP 152 (443)
Q Consensus 93 ~~~e~~Gi~fI-----GPs~~ai~~~gD-K------~~~k~~a~~~GVP~~p~~~~-----~~~~ea~~~a~~iGyP 152 (443)
+.+.++|+..| |+.++.=+.+.- | ..+-+.++++|+|+-=.+.. ...++..+++.++|.+
T Consensus 109 ~~L~~~gl~~v~vSlDg~~~e~hD~~rG~~G~f~~~~~~i~~l~~~Gi~v~i~~ti~r~N~~~l~~i~~la~~lGv~ 185 (375)
T PRK05301 109 AALKAAGLDHIQLSFQDSDPELADRIAGTRGAFAQKLEVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGAD 185 (375)
T ss_pred HHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 99985099889995677987787776378862999999999999749816999872305688899999999972998
No 270
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=59.15 E-value=14 Score=17.41 Aligned_cols=77 Identities=25% Similarity=0.200 Sum_probs=49.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCC-----CH-HHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCE
Q ss_conf 6866447099999999888809659998585577187-----76-75857999189985300069899999998709989
Q gi|254780268|r 4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAM-----HV-RLADESVCIGPPSSKDSYLNIQQIVAACEVTGADA 77 (443)
Q Consensus 4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~-----~~-~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~da 77 (443)
|+.|-.--.+.++.++++-+.|++.++|+|.||.-.. .+ .+|-+ ..|+- -.+++ ++-+..++..++.++|.
T Consensus 2 kavvfaYh~iG~~~L~aLleaG~eV~aVvThpD~Pgek~~~~sVk~~A~e-~gIPV-~qP~~-i~~pe~ie~L~~l~PDl 78 (660)
T PRK08125 2 KAVVFAYHDIGCVGIEALLEAGYEIAAVFTHTDNPGENTFFGSVARLAAE-LGIPV-YAPED-VNHPLWVERIAELAPDI 78 (660)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHH-CCCCE-ECCCC-CCCHHHHHHHHHCCCCE
T ss_conf 38999602676999999997899169998679999877688849999997-49967-64788-99889999998449999
Q ss_pred EE-CCCC
Q ss_conf 94-5853
Q gi|254780268|r 78 IH-PGYG 83 (443)
Q Consensus 78 ih-PGyG 83 (443)
+. -+||
T Consensus 79 ivv~aYg 85 (660)
T PRK08125 79 IFSFYYR 85 (660)
T ss_pred EEEEHHH
T ss_conf 9997474
No 271
>TIGR00874 talAB transaldolase; InterPro: IPR004730 Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate. Transaldolase is evolutionary related to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0004801 transaldolase activity, 0006098 pentose-phosphate shunt, 0005737 cytoplasm.
Probab=58.87 E-value=12 Score=17.86 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=30.1
Q ss_pred CCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCH---HHHHHHHCHHHHHHHHHHCC---CCC
Q ss_conf 300069899999998709989945853131097666889845921626898---99987218998877664224---433
Q gi|254780268|r 57 KDSYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSS---EHIKIMGDKITAKKTAQQLG---IPV 130 (443)
Q Consensus 57 ~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~---~ai~~~gDK~~~k~~a~~~G---VP~ 130 (443)
.+|..|.--|+.+|+...-. .|...--..|..==+... +.+..+-||+.- ..| +..
T Consensus 29 qDaTTNPSLIL~aA~~p~Y~-------------~lid~Av~~gk~~~~~~~~~~~~~~~a~Dkl~V-----~fG~eILK~ 90 (324)
T TIGR00874 29 QDATTNPSLILAAAQLPKYQ-------------ELIDEAVAWGKKQGKDDASIKQQVENALDKLAV-----NFGLEILKI 90 (324)
T ss_pred CCCCCCHHHHHHHHCCHHHH-------------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_conf 98644738999872572579-------------999999999986278513799999999989999-----987788611
Q ss_pred CCCC
Q ss_conf 2433
Q gi|254780268|r 131 VPGS 134 (443)
Q Consensus 131 ~p~~ 134 (443)
+||.
T Consensus 91 vPGR 94 (324)
T TIGR00874 91 VPGR 94 (324)
T ss_pred CCCC
T ss_conf 7993
No 272
>PRK04527 argininosuccinate synthase; Provisional
Probab=58.85 E-value=14 Score=17.37 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=20.4
Q ss_pred EEEEEECCCHHHH-HHHHHHHHCCCEEEEECCC
Q ss_conf 0686644709999-9999888809659998585
Q gi|254780268|r 3 SKILIANRGEIAL-RILRACKELGIPTVAVHST 34 (443)
Q Consensus 3 ~~iLianrGeia~-riira~~elGi~tv~v~s~ 34 (443)
|||..|=.|=.-. =+++=++|.|++.|++..|
T Consensus 4 kkVvLAySGGLDTSv~l~wL~e~g~~Vi~~~ad 36 (397)
T PRK04527 4 KDIVLAFSGGLDTSFCIPYLQERGYAVHTVFAD 36 (397)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 759999089728999999998759947999997
No 273
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=58.75 E-value=1.8 Score=23.80 Aligned_cols=56 Identities=27% Similarity=0.317 Sum_probs=34.0
Q ss_pred CCEEEECC--CCCCCEECCCCCCC----EEEEEEECCCH-HHHHHHHHHHHH-HCEE-CCCCCCH
Q ss_conf 84467776--02387707776843----38999955998-999999998765-4088-2637788
Q gi|254780268|r 360 LGIRMDSA--SYQGYTVPSYYDSL----IAKLIVHGKNR-KECMMRLNRALN-EIII-DGIKTTI 415 (443)
Q Consensus 360 ~gvRvDt~--~~~G~~i~~~yDsm----laKiI~~g~~R-~~Ai~~l~~aL~-~~~I-~Gv~TN~ 415 (443)
.|||+||| ++.+..+-..||.+ ..|.|+.+.+- ++.+..+.+... ...+ -||-||+
T Consensus 277 ~GiR~DSGD~~~~~~k~~~~~~~~g~dp~~k~iv~Sd~Lde~~i~~L~~~~~~~i~~sfGIGT~L 341 (400)
T PRK05321 277 DGLRHDSGDPFEWGEKAIAHYEKLGIDPRTKTLVFSDGLDLDKALELYRHFRGRIRLSFGIGTNL 341 (400)
T ss_pred CCEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEECCCCC
T ss_conf 83344887878999999999997699966647998699999999999998627876457547551
No 274
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=58.58 E-value=14 Score=17.34 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=8.7
Q ss_pred HHHHHHHHHHCCCCEE
Q ss_conf 8999999987099899
Q gi|254780268|r 63 IQQIVAACEVTGADAI 78 (443)
Q Consensus 63 i~~ii~~a~~~~~dai 78 (443)
-+++-++=.+.|.|||
T Consensus 12 ~EAl~~vk~eLG~DAV 27 (432)
T PRK12724 12 QDCLMEMKMKYGSEAT 27 (432)
T ss_pred HHHHHHHHHHHCCCEE
T ss_conf 9999999999789929
No 275
>pfam01163 RIO1 RIO1 family. This is a family of atypical serine kinases which are found in archaea, bacteria and eukaryotes. Activity of Rio1 is vital in Saccharomyces cerevisiae for the processing of ribosomal RNA, as well as for proper cell cycle progression and chromosome maintenance. The structure of RIO1 has been determined.
Probab=58.06 E-value=15 Score=17.28 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEE--EECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 9999999999999886515434102458--972883499822765433201678863
Q gi|254780268|r 247 AQDRTEIGETCVKAMKKIDYRGAGTIEF--LYENGQFYFIEMNTRLQVEHPVTEAIT 301 (443)
Q Consensus 247 ~~~~~~i~~~A~~~~~~~g~~g~~tvEF--l~~~~~~yflEvN~Rlqveh~vte~~t 301 (443)
++...++.+.-.++....|++-.--=|| |+.++++|+|.+--=+..+||-+++.-
T Consensus 106 ~~~~~~ii~~~~~~y~~~glVHgDLSEyNIL~~~~~~~iID~~QaV~~~hp~A~~~L 162 (186)
T pfam01163 106 EEIYDEIIREMRRLYQEAGLVHGDLSEYNVLVDDDKPVIIDVPQAVETDHPNALEFL 162 (186)
T ss_pred HHHHHHHHHHHHHHHHHCCCEECCCHHHHEEEECCCEEEEECCCCCCCCCCCHHHHH
T ss_conf 999999999999999966932136206550643896799956752258997889999
No 276
>TIGR02049 gshA_ferroox glutamate--cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria . It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase..
Probab=58.02 E-value=4.8 Score=20.70 Aligned_cols=171 Identities=17% Similarity=0.165 Sum_probs=84.0
Q ss_pred HHHHHHHHCCCEE-EEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHC----CHH
Q ss_conf 9999888809659-99858557718776758579991899853000698999999987099899458531310----976
Q gi|254780268|r 16 RILRACKELGIPT-VAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSE----NAK 90 (443)
Q Consensus 16 riira~~elGi~t-v~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsE----n~~ 90 (443)
|+-+-++.-|+++ |..-.+.+++.+....+++...+- +-| +|----|..|---||-.. |-+
T Consensus 99 ~l~~iL~~AG~evR~GsL~~ev~ePT~~~~~~g~~~~~-----------epL---~riGT~Drrl~~~GF~p~~ilLNnD 164 (436)
T TIGR02049 99 RLEEILRLAGLEVRLGSLYNEVKEPTELDLPYGTKLLL-----------EPL---LRIGTKDRRLTTDGFDPCVILLNND 164 (436)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEE-----------CCC---CCCCCCCCEECCCCCCCCEEEECCC
T ss_conf 99999986584046414542456874304478887876-----------243---2115677600146777426884263
Q ss_pred H----HHHHHHCC-CEEECCCHHHH----HH----HHCHHHHHHHHHHCCCCCCCCCCC--------------CCHHHHH
Q ss_conf 6----68898459-21626898999----87----218998877664224433243334--------------5579998
Q gi|254780268|r 91 F----AEILEDHH-IKFIGPSSEHI----KI----MGDKITAKKTAQQLGIPVVPGSGE--------------VYPHTAM 143 (443)
Q Consensus 91 f----a~~~e~~G-i~fIGPs~~ai----~~----~gDK~~~k~~a~~~GVP~~p~~~~--------------~~~~ea~ 143 (443)
+ ...++.-. =.++ |++.+= +. .-=...++++|+..||- ||... ...+.+.
T Consensus 165 Ls~giPdiL~~~~eQ~il-Ppl~~GW~~RrK~~hF~~Y~~vA~efa~~i~ID--PWli~p~f~~c~G~DF~~~~g~~~la 241 (436)
T TIGR02049 165 LSAGIPDILKGIKEQDIL-PPLHAGWRSRRKSNHFEAYQEVASEFAKLIGID--PWLINPYFEKCDGIDFDDREGEDALA 241 (436)
T ss_pred CCCCCCHHHCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCCCCCHHHCCCCCCCCCCCCHHHHH
T ss_conf 447876677577526215-875356544411267899999999986441778--44212000010663356103536899
Q ss_pred HHHHCC--------------CCH-HHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHH---HHCCCCCCCEEEEEEEEE
Q ss_conf 732003--------------301-220002345782168887506689999987543---212589981688443420
Q gi|254780268|r 144 PIAKEI--------------GFP-VLVKASAGGGGRGMRIAYSENDLSEAIDQARSE---ALAAFGNDAVYIEKYLEN 203 (443)
Q Consensus 144 ~~a~~i--------------GyP-viiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~e---a~~~fgd~~vlvEk~i~~ 203 (443)
..++++ -=| |+|||.+|-+|.||--|++.+|+...=+.-++. .|.-..=+.|+|.+=|..
T Consensus 242 ~~Vd~vL~~~~~kY~eYgI~~~Pyv~vKAdaGTYGMGimTa~sgeE~l~LNrK~R~kM~k~KEGl~vs~ViiQEGV~T 319 (436)
T TIGR02049 242 TAVDQVLSKVQKKYEEYGIHEKPYVIVKADAGTYGMGIMTAKSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYT 319 (436)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEECHHHHHCCCCCCCCCCCEEECCCCCCCEEEECCCCH
T ss_conf 999999999999887558756875899707887455058842637854253000134431125701055678478440
No 277
>PRK13117 consensus
Probab=57.74 E-value=15 Score=17.24 Aligned_cols=218 Identities=13% Similarity=0.124 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCC-----CCEEECCCC
Q ss_conf 99999999888809659998---5855771877675857999189985300069899999998709-----989945853
Q gi|254780268|r 12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTG-----ADAIHPGYG 83 (443)
Q Consensus 12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~-----~daihPGyG 83 (443)
+.-.++++++-+.|...+=+ ||||=..-+-.+.|.+-- |. +=.+.+.+++.+++-. +--|.=||-
T Consensus 31 ~~t~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~rA-L~------~G~~~~~~~~~~~~ir~~~~~~pivlM~Y~ 103 (268)
T PRK13117 31 ELSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNANLRA-LA------AGVTPAQCFELLAKIRAKYPTIPIGLLLYA 103 (268)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 99999999999669998997899888565579999999999-84------599699999999885004789877997326
Q ss_pred --HHHCC-HHHHHHHHHCCCE---EECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHHC-CCCHHHH
Q ss_conf --13109-7666889845921---62689899987218998877664224433243334557999-873200-3301220
Q gi|254780268|r 84 --FLSEN-AKFAEILEDHHIK---FIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTA-MPIAKE-IGFPVLV 155 (443)
Q Consensus 84 --fLsEn-~~fa~~~e~~Gi~---fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea-~~~a~~-iGyPvii 155 (443)
++.-. ..|++.|.++|+. +..-+.+- . ...+..+++.|+..++-....++++. ...++. -||=..+
T Consensus 104 N~i~~~G~e~F~~~~~~aGvdGvIipDLP~eE-----~-~~~~~~~~~~gl~~I~lv~Ptt~~~Ri~~i~~~a~GFiY~v 177 (268)
T PRK13117 104 NLVFANGIDNFYARCAEAGVDSVLIADVPVEE-----S-APFRQAAKKHGIAPIFICPPNADDDTLRQIASLGRGYTYLL 177 (268)
T ss_pred CHHHHCCHHHHHHHHHHCCCCEEEECCCCHHH-----H-HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 28987179999999997698779857999788-----5-89999998679837998479999999999997479859998
Q ss_pred HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC--EEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 00234578216888750668999998754321258998168844342011033--1577734787023656654211356
Q gi|254780268|r 156 KASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE--VQIFGDGMGNAIHFGERDCSVQRRN 233 (443)
Q Consensus 156 Kp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE--vqVl~D~~g~~v~l~erdCSiQrr~ 233 (443)
=-...-|.+ -...+++.+.++..++.. +-++.+-==|..+.|+. +.-.+|| +.+|-. +
T Consensus 178 s~~GvTG~~----~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~v~~~~~~~aDG----vIVGSa---i---- 237 (268)
T PRK13117 178 SRAGVTGAE----NKAAAPLNHLVEKLKEYN-----APPPLQGFGISEPEQVKAAIKAGAAG----AISGSA---I---- 237 (268)
T ss_pred ECCCCCCCC----CCCCHHHHHHHHHHHHCC-----CCCEEEEECCCCHHHHHHHHHCCCCE----EEECHH---H----
T ss_conf 367778898----666277999999999647-----99869983789999999998638998----998789---9----
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2255403445588999999999999988651
Q gi|254780268|r 234 QKIWEEAHSPVISAQDRTEIGETCVKAMKKI 264 (443)
Q Consensus 234 qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~ 264 (443)
-|.||+... =+++...++.+++..+-.++
T Consensus 238 V~~i~~~~~--~~~~~~~~v~~~v~~Lk~a~ 266 (268)
T PRK13117 238 VKIIEKNLD--NPEKMLAELAEFVRAMKAAT 266 (268)
T ss_pred HHHHHHCCC--CHHHHHHHHHHHHHHHHHHH
T ss_conf 999987166--88999999999999999986
No 278
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.67 E-value=15 Score=17.24 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=15.0
Q ss_pred HHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHH
Q ss_conf 7999873200330122000234578216888750668999998
Q gi|254780268|r 139 PHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQ 181 (443)
Q Consensus 139 ~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~ 181 (443)
.+++..+++.+|-|+ .++++++|+.+++..
T Consensus 222 veQLktya~il~vp~-------------~v~~~~~dl~~~l~~ 251 (388)
T PRK12723 222 KKQIQTYGDIMGIPV-------------KAIESFKDLKEEITQ 251 (388)
T ss_pred HHHHHHHHHHHCCCE-------------EEECCHHHHHHHHHH
T ss_conf 999999999978806-------------985788999999997
No 279
>TIGR00694 thiM hydroxyethylthiazole kinase; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium . Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety , . THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate .; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamin biosynthetic process.
Probab=57.49 E-value=15 Score=17.22 Aligned_cols=108 Identities=31% Similarity=0.435 Sum_probs=50.2
Q ss_pred HHHHHHHHHCCCCCC---CCCCCCC--HHHHHHHHHCCCCHHHHHC---------CCC-CCCCEEEEEEECH-HHHHHHH
Q ss_conf 988776642244332---4333455--7999873200330122000---------234-5782168887506-6899999
Q gi|254780268|r 117 ITAKKTAQQLGIPVV---PGSGEVY--PHTAMPIAKEIGFPVLVKA---------SAG-GGGRGMRIAYSEN-DLSEAID 180 (443)
Q Consensus 117 ~~~k~~a~~~GVP~~---p~~~~~~--~~ea~~~a~~iGyPviiKp---------~~g-GGG~Gi~vv~~~~-el~~a~~ 180 (443)
..+-+.+++.|+|++ =|..... .+-.++.. +.|++-+||= --. +..||+ ++.+ --.++++
T Consensus 69 ~~A~~~ane~~~Pv~LDPVG~GAT~~R~~~~~elL-~~g~~a~IkGN~gEI~~L~G~~~~~~rGV---Ds~~~~~~~~~~ 144 (282)
T TIGR00694 69 IAAVKSANELGKPVVLDPVGVGATKLRTETALELL-SEGKVAAIKGNAGEILSLAGEEDGKMRGV---DSGSQGAADAIA 144 (282)
T ss_pred HHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHH-HHCCCCEEECCHHHHHHHHHHHCCCCCCE---ECCCCCCHHHHH
T ss_conf 99999765438956887752574568899999998-51782067457799998846652840110---266422135899
Q ss_pred HHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCC--CCC-CCCCC-------CCCCCCCCCEEEEECCCCCC
Q ss_conf 8754321258998168844342011033157773478--702-36566-------54211356225540344558
Q gi|254780268|r 181 QARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMG--NAI-HFGER-------DCSVQRRNQKIWEEAHSPVI 245 (443)
Q Consensus 181 ~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g--~~v-~l~er-------dCSiQrr~qkiiEeaPap~l 245 (443)
.+++-|... +-|. -+.| |++++.||+- ... |=|.- -|- +||..|-|.|
T Consensus 145 ~~~~~A~~~---~~vv---v~TG----~~D~vsDG~~GG~~~~~nG~~GitaedlPCv-------iiedGPiPll 202 (282)
T TIGR00694 145 AAQEVARKY---GTVV---VVTG----EVDYVSDGRSGGVYVIHNGTEGITAEDLPCV-------IIEDGPIPLL 202 (282)
T ss_pred HHHHHHHHC---CCEE---EEEC----CEEEEECCCCCCEEEEECCCCCCCCCCCCEE-------EECCCCCCCH
T ss_conf 999988870---9478---9998----7756751886546887568987631336767-------8727884600
No 280
>pfam02548 Pantoate_transf Ketopantoate hydroxymethyltransferase. Ketopantoate hydroxymethyltransferase (EC:2.1.2.11) is the first enzyme in the pantothenate biosynthesis pathway.
Probab=57.22 E-value=15 Score=17.19 Aligned_cols=95 Identities=17% Similarity=0.293 Sum_probs=37.0
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHH----HHCCCCCCCCEEEEE-EECHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 77664224433243334557999873200330122----000234578216888-7506689999987543212589981
Q gi|254780268|r 120 KKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVL----VKASAGGGGRGMRIA-YSENDLSEAIDQARSEALAAFGNDA 194 (443)
Q Consensus 120 k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPvi----iKp~~gGGG~Gi~vv-~~~~el~~a~~~a~~ea~~~fgd~~ 194 (443)
.+++++.|...+.-.......+..++..+-|-||| +-|-..-.--|.++. ++.+|..+.++.|+..-.+ |---
T Consensus 101 ~rlmke~GadaVKlEgg~~~~~~I~~l~~~GIPV~gHiGL~PQ~~~~~GG~r~qGk~~~ea~~l~~dA~~le~A--Ga~~ 178 (261)
T pfam02548 101 ARLMKEAGADAVKLEGGAEMADTIKALVDRGIPVMGHIGLTPQSVNQLGGYKVQGRTEEEAEQLLEDAKALEEA--GAFA 178 (261)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCE
T ss_conf 99998549998997888535899999998899765342367401123688510259999999999999999846--8748
Q ss_pred EEEEEEEEE------EEECCEEEEEECCC
Q ss_conf 688443420------11033157773478
Q gi|254780268|r 195 VYIEKYLEN------PRHIEVQIFGDGMG 217 (443)
Q Consensus 195 vlvEk~i~~------~rhiEvqVl~D~~g 217 (443)
+++| -++. .+.+.+-++|=|.|
T Consensus 179 ivlE-~vp~~la~~It~~~~IPtIGIGAG 206 (261)
T pfam02548 179 LVLE-CVPAELAKEITEKLSIPTIGIGAG 206 (261)
T ss_pred EEEE-CCHHHHHHHHHHCCCCCEEEECCC
T ss_conf 9996-670999999996489989972668
No 281
>pfam00113 Enolase_C Enolase, C-terminal TIM barrel domain.
Probab=57.17 E-value=15 Score=17.18 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=5.9
Q ss_pred HHHHHHHHCCC
Q ss_conf 99988651543
Q gi|254780268|r 257 CVKAMKKIDYR 267 (443)
Q Consensus 257 A~~~~~~~g~~ 267 (443)
+.++++.-|+.
T Consensus 220 ~~~~ak~~g~~ 230 (296)
T pfam00113 220 AVKMAKDAGWG 230 (296)
T ss_pred HHHHHHHCCCE
T ss_conf 99999986964
No 282
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=57.04 E-value=15 Score=17.17 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=31.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCC
Q ss_conf 68664470999999998888096599985855771877
Q gi|254780268|r 4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMH 41 (443)
Q Consensus 4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~ 41 (443)
||||++-|-+...+.+.+-.+|+..+.+ -|+|....+
T Consensus 1 kVlivG~GglG~~va~~L~~~Gv~~i~i-vD~D~v~~~ 37 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITL-IDFDTVELS 37 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEE-EECCCCCCC
T ss_conf 9999997989999999999937971999-978987500
No 283
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=56.77 E-value=15 Score=17.14 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEE--EECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 99999999999886515434102458--972883499822765433201678863
Q gi|254780268|r 249 DRTEIGETCVKAMKKIDYRGAGTIEF--LYENGQFYFIEMNTRLQVEHPVTEAIT 301 (443)
Q Consensus 249 ~~~~i~~~A~~~~~~~g~~g~~tvEF--l~~~~~~yflEvN~Rlqveh~vte~~t 301 (443)
...++.+...++....|+.-.--=|| |++++++|+|.+--=+.++||-.++.-
T Consensus 122 ~~~~il~~~~~ly~~~~lVHGDLSEyNIl~~~~~~~iID~pQaV~~~hpnA~~~L 176 (190)
T cd05147 122 LYLQVIQIMRILYQDCRLVHADLSEYNLLYHDGKLYIIDVSQSVEHDHPHALEFL 176 (190)
T ss_pred HHHHHHHHHHHHHHHCCCEECCCCHHHEEECCCCEEEEECCCCCCCCCCCHHHHH
T ss_conf 9999999999999974932245315420524899899966641147897889999
No 284
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=56.61 E-value=13 Score=17.60 Aligned_cols=220 Identities=16% Similarity=0.173 Sum_probs=103.4
Q ss_pred HHHHHHCCCCEEECC--CCHHHCCHHHHHHHHHCCCEEECCCHHHHH-HHHCHHHHHHHHHHCCCCCCCCCCCCCH-HHH
Q ss_conf 999987099899458--531310976668898459216268989998-7218998877664224433243334557-999
Q gi|254780268|r 67 VAACEVTGADAIHPG--YGFLSENAKFAEILEDHHIKFIGPSSEHIK-IMGDKITAKKTAQQLGIPVVPGSGEVYP-HTA 142 (443)
Q Consensus 67 i~~a~~~~~daihPG--yGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~-~~gDK~~~k~~a~~~GVP~~p~~~~~~~-~ea 142 (443)
+..|.-.|+..|+-. +..++ ...|++.++++|++ . .++. ..|+......++..-+|..+-++..... ...
T Consensus 157 i~pALaaGNtVV~KPs~~tp~~-~~~l~~~~~eaGlP----~-gv~nvv~G~~~~~~~L~~~p~v~~vsFTGS~~~G~~I 230 (478)
T cd07085 157 FPMAIACGNTFVLKPSERVPGA-AMRLAELLQEAGLP----D-GVLNVVHGGKEAVNALLDHPDIKAVSFVGSTPVGEYI 230 (478)
T ss_pred HHHHHHCCCEEEECCCCCCHHH-HHHHHHHHHHHCCC----C-CEEEEECCCHHHHHHHHCCCCCCEEEEECCCHHHHHH
T ss_conf 9999972992786387317799-99999999982989----0-4288851781689999739885879998983688889
Q ss_pred HHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCC-----CCCEEEEEEEEEEEECC-----EE--
Q ss_conf 8732003301220002345782168887506689999987543212589-----98168844342011033-----15--
Q gi|254780268|r 143 MPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFG-----NDAVYIEKYLENPRHIE-----VQ-- 210 (443)
Q Consensus 143 ~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fg-----d~~vlvEk~i~~~rhiE-----vq-- 210 (443)
.+.+.+.+ .|-....||+.--+|....|+..+.+.+..-+...-| -.+++|++-|-. .=+| ++
T Consensus 231 ~~~aa~~~----k~v~lELGGknp~IV~~DADld~av~~~~~~~f~naGQ~C~a~~Rv~V~~~i~d-~f~~~l~~~~~~l 305 (478)
T cd07085 231 YERAAANG----KRVQALGGAKNHAVVMPDADLEQTANALVGAAFGAAGQRCMALSVAVAVGDEAD-EWIPKLVERAKKL 305 (478)
T ss_pred HHHHHCCC----CEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHH-HHHHHHHHHHHHC
T ss_conf 99765128----669983688672799578799999998899999986898888865775002289-9999999999851
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEEC-CCCEE-----
Q ss_conf 777347870236566542113562255403445588999999999999988651543--4102458972-88349-----
Q gi|254780268|r 211 IFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYR--GAGTIEFLYE-NGQFY----- 282 (443)
Q Consensus 211 Vl~D~~g~~v~l~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~--g~~tvEFl~~-~~~~y----- 282 (443)
.+||.......+ . |.++++.++++.++-.+..+. |-. --|.....-+ ++.+|
T Consensus 306 ~vG~p~d~~~~~-----------------G--Pli~~~~~~~v~~~v~~a~~~-Ga~~~~gG~~~~~~~~~~G~f~~Pti 365 (478)
T cd07085 306 KVGAGDDPGADM-----------------G--PVISPAAKERIEGLIESGVEE-GAKLVLDGRGVKVPGYENGNFVGPTI 365 (478)
T ss_pred CCCCCCCCCCCC-----------------C--CCCCHHHHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCEECCEE
T ss_conf 578988877860-----------------8--867999999999999999986-99999889668888788883557579
Q ss_pred EEECCCCCCCCCHHHHHHHC-------CCCHHHHHHHHHCCCCCC
Q ss_conf 98227654332016788632-------562011232221022222
Q gi|254780268|r 283 FIEMNTRLQVEHPVTEAITG-------IDLVHEQIYVASENRLSV 320 (443)
Q Consensus 283 flEvN~Rlqveh~vte~~tg-------vdlv~~~~~~a~g~~l~~ 320 (443)
|..+++... -+.|++.| +|=.+.++.+|...+-.+
T Consensus 366 l~~v~~~~~---i~~eE~FGPV~~v~~~~~~dEAi~~aN~t~yGL 407 (478)
T cd07085 366 LDNVTPDMK---IYKEEIFGPVLSIVRVDTLDEAIAIINANPYGN 407 (478)
T ss_pred EEEECCCCC---CCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCC
T ss_conf 984036775---668445286699997299999999986899986
No 285
>pfam08886 GshA Glutamate-cysteine ligase. This is a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=56.60 E-value=3.4 Score=21.72 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=20.9
Q ss_pred HHHHCCCCCCCCEEEEEEECHHHHHHHHHH
Q ss_conf 220002345782168887506689999987
Q gi|254780268|r 153 VLVKASAGGGGRGMRIAYSENDLSEAIDQA 182 (443)
Q Consensus 153 viiKp~~gGGG~Gi~vv~~~~el~~a~~~a 182 (443)
|+||+..|-+|.|+-.|++.+|+...=+..
T Consensus 263 V~VKad~GTYGMGIm~v~~~~ei~~Lnrk~ 292 (404)
T pfam08886 263 VFVKADAGTYGMGIMTVRSGDEVLALNRKQ 292 (404)
T ss_pred EEEECCCCCCCCEEEEECCHHHHHHHCHHH
T ss_conf 999678998773379955999998867777
No 286
>PRK13112 consensus
Probab=56.56 E-value=15 Score=17.11 Aligned_cols=219 Identities=12% Similarity=0.143 Sum_probs=102.1
Q ss_pred HHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCC---C--CEEECCCC--
Q ss_conf 999999888809659998---5855771877675857999189985300069899999998709---9--89945853--
Q gi|254780268|r 14 ALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTG---A--DAIHPGYG-- 83 (443)
Q Consensus 14 a~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~---~--daihPGyG-- 83 (443)
-.++++++-+.|...+=+ +|||=..-+-.+.|.+.. |. +=.+++.++++.++-. . --|.=||-
T Consensus 34 s~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rA-L~------~G~~~~~~~~~~~~ir~~~~~~PivlM~Y~N~ 106 (279)
T PRK13112 34 SLKIMKALPKAGADIIELGMPFSDPMADGPAIQAAGLRA-LK------AGQTLAKTLYLAREFRKDDDTTPIVLMGYYNP 106 (279)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHHHCCCCCCCEEEEEECHH
T ss_conf 999999998779998997899898666579999999999-97------69968899999998513489988799851249
Q ss_pred HHHCC-HHHHHHHHHCCCE-EECC--CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHH-CCCCHHHHHC
Q ss_conf 13109-7666889845921-6268--9899987218998877664224433243334557999-87320-0330122000
Q gi|254780268|r 84 FLSEN-AKFAEILEDHHIK-FIGP--SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTA-MPIAK-EIGFPVLVKA 157 (443)
Q Consensus 84 fLsEn-~~fa~~~e~~Gi~-fIGP--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea-~~~a~-~iGyPviiKp 157 (443)
+++-. ..|++.|.++|+. +|=| +.+- ....+..+++.|+..++.....+.++. ...++ .-||=..+=-
T Consensus 107 i~~~G~e~F~~~~~~aGvdGvIipDLP~eE------~~~~~~~~~~~~i~~I~lvaPtt~~eRi~~i~~~s~GFiY~Vs~ 180 (279)
T PRK13112 107 IYIYGVERFLTDAKAAGVDGLIVVDLPPEM------DAELCIPAMKAGINFIRLATPTTDDKRLPKVLANTSGFVYYVSM 180 (279)
T ss_pred HHHHCHHHHHHHHHHCCCCEEEECCCCHHH------HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf 988479999999997399879846999788------89999999857834699825899899999998527880899835
Q ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC-EEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 234578216888750668999998754321258998168844342011033-1577734787023656654211356225
Q gi|254780268|r 158 SAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE-VQIFGDGMGNAIHFGERDCSVQRRNQKI 236 (443)
Q Consensus 158 ~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE-vqVl~D~~g~~v~l~erdCSiQrr~qki 236 (443)
...-|. + -...+++.+.+++.++.. +-++.+-==|..+.|+. +.-.+|| +.+|-.= -|.
T Consensus 181 ~GvTG~---~-~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~~~~~~~~aDG----vIVGSAi-------Vk~ 240 (279)
T PRK13112 181 TGITGS---A-LADTSAVGEAVARIKRHT-----DLPVCVGFGVKTPEQARAIAAHADG----VVVGTAI-------VNA 240 (279)
T ss_pred CCCCCC---C-CCCHHHHHHHHHHHHHHC-----CCCCEEEECCCCHHHHHHHHCCCCE----EEECHHH-------HHH
T ss_conf 666676---6-456488999999999717-----8987678356999999999725999----9987799-------999
Q ss_pred EEEC--CCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 5403--4455889999999999999886515
Q gi|254780268|r 237 WEEA--HSPVISAQDRTEIGETCVKAMKKID 265 (443)
Q Consensus 237 iEea--Pap~l~~~~~~~i~~~A~~~~~~~g 265 (443)
||++ ......++..+.+.+.+..+...+.
T Consensus 241 Ie~~~~~~~~~~~~~~~~v~~~~~~l~~g~k 271 (279)
T PRK13112 241 LAGSLDEDGKATADTVAAVADLVAALAEGVR 271 (279)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9854674110045799999999999999999
No 287
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=56.27 E-value=15 Score=17.08 Aligned_cols=132 Identities=20% Similarity=0.229 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHCCCCEEE--CCCCHHHCCHHHHHHHH-HCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCC-CCCCC
Q ss_conf 6989999999870998994--58531310976668898-45921626898999872189988776642244332-43334
Q gi|254780268|r 61 LNIQQIVAACEVTGADAIH--PGYGFLSENAKFAEILE-DHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVV-PGSGE 136 (443)
Q Consensus 61 ldi~~ii~~a~~~~~daih--PGyGfLsEn~~fa~~~e-~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~-p~~~~ 136 (443)
.=.+.|++.-++.|++-|+ ||= .+..|-.++. +.+|.||+..-|......==.-+| +-.+.||-.+ .|-..
T Consensus 22 tGae~lv~~L~~~GV~~vFGvpG~----~~l~l~dal~~~~~i~~V~~rhE~~A~~mAdgYaR-~tg~~gv~~~t~GPG~ 96 (587)
T PRK06965 22 IGATILMKALADEGVEFIWGYPGG----SVLYIYDELYKQDKIQHVLVRHEQAAVHAADGYAR-ATGKVGVALVTSGPGV 96 (587)
T ss_pred CHHHHHHHHHHHCCCCEEEECCCC----CHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH-HHCCCEEEEECCCHHH
T ss_conf 599999999998799999979762----25999999862599709804968999999999999-9699889997567049
Q ss_pred CCHHHHHHHHHCCCCHHHHHCC----CCCC----------------CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 5579998732003301220002----3457----------------8216888750668999998754321258998168
Q gi|254780268|r 137 VYPHTAMPIAKEIGFPVLVKAS----AGGG----------------GRGMRIAYSENDLSEAIDQARSEALAAFGNDAVY 196 (443)
Q Consensus 137 ~~~~ea~~~a~~iGyPviiKp~----~gGG----------------G~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vl 196 (443)
.+.-..+.-|..=+-|+++=.- ...| .|-...+.+.+++.+.+++|.+.+... ..++|+
T Consensus 97 ~N~~~gia~A~~d~~Pvl~i~G~~~~~~~g~~~~q~~d~~~~~~~~tK~~~~v~~~~~i~~~l~~A~~~A~~~-~~GPV~ 175 (587)
T PRK06965 97 TNAVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVGITRPCVKHNFLVKDVRDLAETVKKAFYIARTG-RPGPVL 175 (587)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHC-CCCCEE
T ss_conf 9999999999974998699868897000577643200466531565200476188999999999999998527-996279
Q ss_pred EE
Q ss_conf 84
Q gi|254780268|r 197 IE 198 (443)
Q Consensus 197 vE 198 (443)
|+
T Consensus 176 l~ 177 (587)
T PRK06965 176 ID 177 (587)
T ss_pred EE
T ss_conf 95
No 288
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.19 E-value=16 Score=17.07 Aligned_cols=63 Identities=19% Similarity=0.336 Sum_probs=44.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEE--ECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE
Q ss_conf 86644709999999988880965999--858557718776758579991899853000698999999987099899
Q gi|254780268|r 5 ILIANRGEIALRILRACKELGIPTVA--VHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI 78 (443)
Q Consensus 5 iLianrGeia~riira~~elGi~tv~--v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai 78 (443)
=|||++|-.-+.+..+|+..|+.... +-.+.|.. ....-.+-+.+ -++-.++..-+.+++|-|
T Consensus 8 glIaG~G~LP~~va~~a~~~G~~~~ii~l~~eaD~~--~~~~e~~~~~i---------G~vg~lik~l~~~~v~~v 72 (279)
T COG3494 8 GLIAGNGSLPLEVAENARNQGYAPFIIGLRGEADPE--LKEFEYKEVSI---------GEVGKLIKLLKTEGVDRV 72 (279)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCHH--HHCCCCEEEEH---------HHHHHHHHHHHHCCCCEE
T ss_conf 999559867589999998679982799835756655--52588707757---------879999999998488689
No 289
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component; InterPro: IPR014350 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , . According to structural and sequence analyses, the PTS EIIB domain (2.7.1.69 from EC) can be divided in five groups , , : The PTS EIIB type 1 domain, which is found in the Glucose class of PTS, has an average length of about 80 amino acids. It forms a split alpha/beta sandwich composed of an antiparallel sheet (beta 1 to beta 4) and three alpha helices superimposed onto one side of the sheet. The phosphorylation site (Cys) is located at the end of the first beta strand on a protrusion formed by the edge of beta 1 and the reverse turn between beta 1 and beta 2 . The PTS EIIB type 2 domain, which is found in the Mannitol class of PTS, has an average length of about 100 amino acids. It consists of a four stranded parallel beta sheet flanked by two alpha helices (alpha 1 and 3) on one face and helix alpha 2 on the opposite face, with a characteristic Rossmann fold comprising two right-handed beta-alpha-beta motifs. The phosphorylation site (Cys) is located at the N-terminus of the domain, in the first beta strand. The PTS EIIB type 3 domain, which is found in the Lactose class of PTS, has an average length of about 100 amino acids. It is composed of a central four-stranded parallel open twisted beta sheet, which is flanked by three alpha helices on the concave side and two on the convex side of the beta sheet. The phosphorylation site (Cys) is located in the C-terminal end of the first beta strand . The PTS EIIB type 4 domain, which is found in the Mannose class of PTS, has an average length of about 160 amino acids. It has a central core of seven parallel beta strands surrounded by a total of six alpha-helices. Three helices cover the front face, one the back face with the remaining two capping the central beta sheet at the top and bottom. The phosphorylation site (His) is located at the suface exposed loop between strand 1 and helix 1 . The PTS EIIB type 5 domain, which is found in the Sorbitol class of PTS, has an average length of about 190 amino acids. The phosphorylation site (Cys) is located in the N-terminus of the domain. The EIIB type 3 protein is often found downstream of EIIC type 3. This entry hits fewer proteins than IPR013012 from INTERPRO. .
Probab=56.19 E-value=16 Score=17.07 Aligned_cols=72 Identities=24% Similarity=0.339 Sum_probs=53.6
Q ss_pred EEECCCCCCCCHHCCHHHHHHHHHHCCCCEE-EC-CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHH
Q ss_conf 9991899853000698999999987099899-45-853131097666889845921626898999872189988776642
Q gi|254780268|r 48 SVCIGPPSSKDSYLNIQQIVAACEVTGADAI-HP-GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQ 125 (443)
Q Consensus 48 ~~~i~~~~~~~sYldi~~ii~~a~~~~~dai-hP-GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~ 125 (443)
.+.|+.+-...|-| +.++-+.|++.+++.. +- +||-. .+.+.++.+.++||-.+. ++...|+...+
T Consensus 49 iLl~CaaGmstsLL-v~~l~k~A~~~~~~~~i~A~~~~~~------~e~~~~~d~VlLaPQ~~~-----~~~~lk~~t~~ 116 (142)
T TIGR00853 49 ILLLCAAGMSTSLL-VNKLNKAAKEYGVPVKIAAVSYGAA------MEILDDADVVLLAPQVAY-----MLPDLKKETDK 116 (142)
T ss_pred EEEEECCCCCHHHH-HHHHHHHHHHCCCCEEEEEECCCHH------HHHHHHHCEEEEHHHHHH-----HHHHHHHHCCC
T ss_conf 68887697354789-9999999984599758884057634------433535043112032675-----57999985135
Q ss_pred CCCCCC
Q ss_conf 244332
Q gi|254780268|r 126 LGIPVV 131 (443)
Q Consensus 126 ~GVP~~ 131 (443)
.|||+.
T Consensus 117 ~Gip~~ 122 (142)
T TIGR00853 117 KGIPVE 122 (142)
T ss_pred CCCCEE
T ss_conf 897536
No 290
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=55.79 E-value=16 Score=17.03 Aligned_cols=88 Identities=23% Similarity=0.252 Sum_probs=44.8
Q ss_pred CEEEEE-ECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE--
Q ss_conf 706866-44709999999988880965999858557718776758579991899853000698999999987099899--
Q gi|254780268|r 2 ISKILI-ANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI-- 78 (443)
Q Consensus 2 ~~~iLi-anrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai-- 78 (443)
|+|||| ++-+|- ..+.+.+.+ +.++.-++-. ...+.. .. -.+.+| ...|.+.+.+..+++++++|
T Consensus 1 m~~IlilgGT~Eg-r~la~~L~~--~~~~~s~ag~-~~~~~~-~~-~~i~~G------~~~~~~~l~~~l~~~~i~~VID 68 (241)
T PRK08057 1 MPRILLLGGTSEA-RALARALAP--DDTVTSLAGR-TLKPAD-LP-GPVRVG------GFGGAEGLAAYLREEGIDLVVD 68 (241)
T ss_pred CCEEEEEECHHHH-HHHHHHHHC--CCEEEEEEEE-CCCCCC-CC-CCEEEC------CCCCHHHHHHHHHHCCCCEEEE
T ss_conf 9659999670899-999999748--9989998530-255656-88-767988------8899999999999679989998
Q ss_pred --ECCCCHHHCCHHHHHHHHHCCCEEE
Q ss_conf --4585313109766688984592162
Q gi|254780268|r 79 --HPGYGFLSENAKFAEILEDHHIKFI 103 (443)
Q Consensus 79 --hPGyGfLsEn~~fa~~~e~~Gi~fI 103 (443)
||==--.|+|+ .++|++.||+++
T Consensus 69 ATHPfA~~is~~a--~~a~~~~~ipyl 93 (241)
T PRK08057 69 ATHPYAAQISANA--AAACRALGIPYL 93 (241)
T ss_pred CCCCCHHHHHHHH--HHHHHHHCCEEE
T ss_conf 9997089999999--999998697079
No 291
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=55.45 E-value=16 Score=16.99 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHCCCCC
Q ss_conf 8998877664224433
Q gi|254780268|r 115 DKITAKKTAQQLGIPV 130 (443)
Q Consensus 115 DK~~~k~~a~~~GVP~ 130 (443)
|-...|+++++.|+.+
T Consensus 167 d~~ei~~ll~~~Gi~v 182 (399)
T cd00316 167 DLRELKRLLEEMGIRV 182 (399)
T ss_pred CHHHHHHHHHHCCCCE
T ss_conf 0999999999869905
No 292
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=55.44 E-value=16 Score=16.99 Aligned_cols=35 Identities=23% Similarity=0.505 Sum_probs=20.9
Q ss_pred HHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf 75857999189985300069899999998709989945
Q gi|254780268|r 43 RLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP 80 (443)
Q Consensus 43 ~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP 80 (443)
+..|-.+.+.....+ -|+-+|+..|.-.|++.||-
T Consensus 16 Rq~dL~vvLD~V~dP---~NlGAIiRTadA~Gv~~V~~ 50 (229)
T PRK11081 16 RQPDLTVCLEQVHKP---HNVSAIIRTADAVGVHEVHA 50 (229)
T ss_pred CCCCEEEEECCCCCC---CHHHHHHHHHHHHCCCEEEE
T ss_conf 589869997688998---50999999999838974689
No 293
>PRK08611 pyruvate oxidase; Provisional
Probab=55.14 E-value=16 Score=16.96 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=27.2
Q ss_pred CCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 33012200023457821688875066899999875432125899816884
Q gi|254780268|r 149 IGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 149 iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
+...-+.+|. .+=...+.+++++.+.+++|.+.|.+ +.++|+++
T Consensus 117 ~d~~~l~~~v----tk~~~~v~~~~~i~~~l~~A~~~A~~--~rGPv~l~ 160 (576)
T PRK08611 117 VNLEKMFEDV----AVYNHQIMSAENLPEIVNEAIRTAYE--KKGVAVLT 160 (576)
T ss_pred ECHHHHHCCC----CEEEEEECCHHHHHHHHHHHHHHHHC--CCCCEEEE
T ss_conf 2377750550----02687838988869999999999863--89954895
No 294
>pfam04842 DUF639 Plant protein of unknown function (DUF639). Plant protein of unknown function.
Probab=55.05 E-value=9.7 Score=18.52 Aligned_cols=31 Identities=19% Similarity=0.464 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHCEECCCCCCHHHHHHHHC
Q ss_conf 9999999987654088263778889998968
Q gi|254780268|r 393 KECMMRLNRALNEIIIDGIKTTIPLFQKLIK 423 (443)
Q Consensus 393 ~~Ai~~l~~aL~~~~I~Gv~TN~~~l~~il~ 423 (443)
.+-+.+++...+..+++||.||+..++++|-
T Consensus 467 ~k~ve~AqATid~vKveGI~tNvavmkELl~ 497 (682)
T pfam04842 467 YKVVEKAQATIDAVKIEGIDTNVAVMKELIL 497 (682)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 4235698775877632787767999999988
No 295
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=54.94 E-value=16 Score=16.93 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=28.9
Q ss_pred HHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCE-EEEEEE
Q ss_conf 99987320033012200023457821688875066899999875432125899816-884434
Q gi|254780268|r 140 HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAV-YIEKYL 201 (443)
Q Consensus 140 ~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~v-lvEk~i 201 (443)
.+++..+.+.|-||.||-- + --+.++...+.+...+ +|+.++ +.|+=+
T Consensus 124 tdLl~a~a~t~kpV~iKkg-------~--~~s~~~~~~a~eki~~-----~Gn~~v~l~ERG~ 172 (266)
T PRK13398 124 FELLKEVGKTKKPILLKRG-------M--SATIEEWLYAAEYIMS-----EGNENVVLCERGI 172 (266)
T ss_pred HHHHHHHHHHCCCEEECCC-------C--CCCHHHHHHHHHHHHH-----CCCCCEEEEECCC
T ss_conf 8999999970996673487-------6--6888999999999984-----7998389984252
No 296
>pfam04227 Indigoidine_A Indigoidine synthase A like protein. Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown.
Probab=54.92 E-value=9.1 Score=18.73 Aligned_cols=184 Identities=21% Similarity=0.271 Sum_probs=85.1
Q ss_pred HHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHC------HHHHHHHHHHCCCCCCCC-CC
Q ss_conf 89999999870998994585313109766688984592162689899987218------998877664224433243-33
Q gi|254780268|r 63 IQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGD------KITAKKTAQQLGIPVVPG-SG 135 (443)
Q Consensus 63 i~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gD------K~~~k~~a~~~GVP~~p~-~~ 135 (443)
...+.++++++|+.-- . .---.|...+|-+.+.++.+.+ |...|.+. +-+..+ +.
T Consensus 34 a~~~e~~vr~~GavPA-----------t---iai~~G~~~vGl~~~el~~la~~~~~~~K~S~RDl~----~~~a~~~~G 95 (293)
T pfam04227 34 AREVEQIVRENGAVPA-----------T---IAIIDGRIKVGLSDEELERLAQAGKDVAKVSRRDLP----YVVATGKTG 95 (293)
T ss_pred HHHHHHHHHHCCCCCE-----------E---EEEECCEEEECCCHHHHHHHHHCCCCCCCCCHHHHH----HHHHCCCCC
T ss_conf 9999999997799621-----------6---899989877469999999997247665435530279----998158765
Q ss_pred CCCHHHHHHHHHCCCCHHHHHCCCCCCCC--EEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE----E-EEEEEEEC-
Q ss_conf 45579998732003301220002345782--1688875066899999875432125899816884----4-34201103-
Q gi|254780268|r 136 EVYPHTAMPIAKEIGFPVLVKASAGGGGR--GMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE----K-YLENPRHI- 207 (443)
Q Consensus 136 ~~~~~ea~~~a~~iGyPviiKp~~gGGG~--Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE----k-~i~~~rhi- 207 (443)
..+..--..+|+..|-+|+.- .|-||. |-.. +.|.=.+..+.+ ..+|.|= | +++-+|-+
T Consensus 96 aTTVsaTm~iA~~aGI~VFaT--GGIGGVHrg~~~--t~DiSaDL~eL~---------~tpv~VVcaG~KsILDi~~TlE 162 (293)
T pfam04227 96 ATTVAATMILAHLAGIKVFAT--GGIGGVHRGAEE--SFDISADLTELA---------RTPVAVVCAGAKSILDIPKTLE 162 (293)
T ss_pred CCHHHHHHHHHHHCCCEEEEE--CCCCCCCCCCCC--CCCCCCCHHHHH---------CCCEEEEECCCHHHHCCHHHHH
T ss_conf 210999999999869808974--674512578645--632143478881---------5975999426076505446899
Q ss_pred -----CEEEEEECCCCCCCCCCCCCC--CCCCC------------------CE-EEEECCCC---CCCHHHHHHHHHHHH
Q ss_conf -----315777347870236566542--11356------------------22-55403445---588999999999999
Q gi|254780268|r 208 -----EVQIFGDGMGNAIHFGERDCS--VQRRN------------------QK-IWEEAHSP---VISAQDRTEIGETCV 258 (443)
Q Consensus 208 -----EvqVl~D~~g~~v~l~erdCS--iQrr~------------------qk-iiEeaPap---~l~~~~~~~i~~~A~ 258 (443)
-|.|++=+.+..-.|+.|+-- +..|- +. ++=--|-| .++.+..+++.+.|+
T Consensus 163 ~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~~~~~~~eiA~i~~~~~~lgl~~g~LianPIP~e~~i~~~~ie~~I~~Al 242 (293)
T pfam04227 163 YLETQGVPVIGYGTDEFPAFYSRDSGFKVPYRLDSAEEIAAIIRARWALGLQGGVLVANPIPEEYAIDREEIEAAIEQAL 242 (293)
T ss_pred HHHHCCCEEEEECCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHCCCHHHHHHHHHHHH
T ss_conf 99975943897458765642305889988661389999999999999718998359966897254499899999999999
Q ss_pred HHHHHHCCCCCCEEEEEEC
Q ss_conf 9886515434102458972
Q gi|254780268|r 259 KAMKKIDYRGAGTIEFLYE 277 (443)
Q Consensus 259 ~~~~~~g~~g~~tvEFl~~ 277 (443)
+-++.-|..|-..-=||++
T Consensus 243 ~ea~~~gI~GK~vTPfLL~ 261 (293)
T pfam04227 243 AEAEEQGITGKAVTPFLLA 261 (293)
T ss_pred HHHHHCCCCCCCCCHHHHH
T ss_conf 9999849967545879999
No 297
>pfam02593 DUF166 Uncharacterized ArCR, COG1810.
Probab=54.90 E-value=16 Score=16.93 Aligned_cols=35 Identities=11% Similarity=-0.044 Sum_probs=21.4
Q ss_pred EECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCC
Q ss_conf 64470999999998888096599985855771877
Q gi|254780268|r 7 IANRGEIALRILRACKELGIPTVAVHSTADSGAMH 41 (443)
Q Consensus 7 ianrGeia~riira~~elGi~tv~v~s~~D~~a~~ 41 (443)
|.-+|.-.-|++.+.+.-.---|.++.-|+.....
T Consensus 2 vi~~G~yGeR~~~~i~~~~~~~v~~~~~pe~l~e~ 36 (215)
T pfam02593 2 VLYDGQYGERAVENILNYFDFCVIVLEYPEELPEF 36 (215)
T ss_pred CCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 14037302899999986489429996177646432
No 298
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=54.69 E-value=16 Score=16.91 Aligned_cols=131 Identities=18% Similarity=0.179 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHCCCCEEE--CCCCHHHCCHHHHHHHH-HCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCC-CCCCCC
Q ss_conf 989999999870998994--58531310976668898-45921626898999872189988776642244332-433345
Q gi|254780268|r 62 NIQQIVAACEVTGADAIH--PGYGFLSENAKFAEILE-DHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVV-PGSGEV 137 (443)
Q Consensus 62 di~~ii~~a~~~~~daih--PGyGfLsEn~~fa~~~e-~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~-p~~~~~ 137 (443)
-.+.+++.-++.|+|-|+ ||=. +..|-.++. ..+|.||+..-|......==.-+| +-.+.||-.+ .|-...
T Consensus 33 gae~lv~~L~~~GV~~vFGvPG~~----~l~l~dal~~~~~i~~V~~rhE~~A~~mAdgYAR-~tG~~gv~~~t~GPG~~ 107 (612)
T PRK07789 33 GAQAVVRSLEELGVDVVFGIPGGA----ILPVYDPLFDSTKLRHVLVRHEQGAGHAAEGYAQ-ATGRVGVCMATSGPGAT 107 (612)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCC----HHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHH-HHCCCEEEEEECCCHHH
T ss_conf 999999999987999999798845----5999999753699649831968999999999999-97899899980681799
Q ss_pred CHHHHHHHHHCCCCHHHHHC----CCCCC----------------CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 57999873200330122000----23457----------------82168887506689999987543212589981688
Q gi|254780268|r 138 YPHTAMPIAKEIGFPVLVKA----SAGGG----------------GRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYI 197 (443)
Q Consensus 138 ~~~ea~~~a~~iGyPviiKp----~~gGG----------------G~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlv 197 (443)
+.-..+.-|..=+-||++=. ...-| .|-...+.+++++.+.+++|.+.+.+. .-++|+|
T Consensus 108 Na~~gla~A~~d~~Pvl~I~G~~~~~~~g~~~~qe~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A~~g-rpGPV~i 186 (612)
T PRK07789 108 NLVTPIADANMDSVPVVAITGQVGSGLIGTDAFQEADIVGITMPITKHNFLVTRAEDIPRVIAEAFHIASTG-RPGPVLV 186 (612)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHCC-CCCCEEE
T ss_conf 999999999960998899968787543789987522488764334401232189999999999999999618-9963899
Q ss_pred E
Q ss_conf 4
Q gi|254780268|r 198 E 198 (443)
Q Consensus 198 E 198 (443)
+
T Consensus 187 ~ 187 (612)
T PRK07789 187 D 187 (612)
T ss_pred E
T ss_conf 6
No 299
>PRK08175 aminotransferase; Validated
Probab=54.69 E-value=16 Score=16.91 Aligned_cols=14 Identities=0% Similarity=0.145 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89999999987654
Q gi|254780268|r 392 RKECMMRLNRALNE 405 (443)
Q Consensus 392 R~~Ai~~l~~aL~~ 405 (443)
-++|++|+.++|+.
T Consensus 376 l~eal~Ri~~~~~a 389 (395)
T PRK08175 376 IRQAVRGIKAMFRA 389 (395)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999986
No 300
>pfam11394 DUF2875 Protein of unknown function (DUF2875). This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=54.47 E-value=6.5 Score=19.75 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=9.6
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 899887766422443324333455
Q gi|254780268|r 115 DKITAKKTAQQLGIPVVPGSGEVY 138 (443)
Q Consensus 115 DK~~~k~~a~~~GVP~~p~~~~~~ 138 (443)
+.+...+-...+||-..=|....+
T Consensus 99 ~~I~~~R~~AsLGvTlfLWq~d~n 122 (451)
T pfam11394 99 TDINGGRNQASLGVTLFLWQDDAN 122 (451)
T ss_pred HHHHCCCCCCCCCEEEEEEEECCC
T ss_conf 776434433443205677640334
No 301
>PRK07328 histidinol-phosphatase; Provisional
Probab=54.40 E-value=17 Score=16.87 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=8.2
Q ss_pred CHHHHHHHHHHCCCCEE
Q ss_conf 98999999987099899
Q gi|254780268|r 62 NIQQIVAACEVTGADAI 78 (443)
Q Consensus 62 di~~ii~~a~~~~~dai 78 (443)
.++..++.|.+.|.+.|
T Consensus 18 ~~ee~v~~Ai~~Gl~~i 34 (268)
T PRK07328 18 TPEEYVEEARAKGLAEI 34 (268)
T ss_pred CHHHHHHHHHHCCCCEE
T ss_conf 19999999998799989
No 302
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=54.22 E-value=17 Score=16.86 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 09999999988880965999858
Q gi|254780268|r 11 GEIALRILRACKELGIPTVAVHS 33 (443)
Q Consensus 11 Geia~riira~~elGi~tv~v~s 33 (443)
.++.--+.+.|++.||+.+..++
T Consensus 15 ~~l~~gi~~~~~~~GY~~~i~~~ 37 (270)
T cd01545 15 SEIQLGALDACRDTGYQLVIEPC 37 (270)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 99999999999984998999969
No 303
>PRK07695 transcriptional regulator TenI; Provisional
Probab=54.15 E-value=17 Score=16.85 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=9.7
Q ss_pred HHHHHHHCCCCEEECCC
Q ss_conf 99999870998994585
Q gi|254780268|r 66 IVAACEVTGADAIHPGY 82 (443)
Q Consensus 66 ii~~a~~~~~daihPGy 82 (443)
=+++|...++|+||-|+
T Consensus 65 ~~dlA~~~~adGVHLGq 81 (202)
T PRK07695 65 RVDIALLLNIHRVQLGY 81 (202)
T ss_pred CHHHHHHCCCCEEEECH
T ss_conf 19999884999892182
No 304
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=53.99 E-value=17 Score=16.83 Aligned_cols=130 Identities=19% Similarity=0.284 Sum_probs=75.3
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC-CCCEEE-CCCCHHHCCHHH
Q ss_conf 999999888809659998585577187767585799918998530006989999999870-998994-585313109766
Q gi|254780268|r 14 ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT-GADAIH-PGYGFLSENAKF 91 (443)
Q Consensus 14 a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~-~~daih-PGyGfLsEn~~f 91 (443)
-.|+++++.++|++-|=+ -||.+.. .-|+..+++-.++. +.+-|- --=|.|= +.+
T Consensus 56 i~~i~~~~~~lGi~kiRl-------------------TGGEPLl--R~di~~li~~l~~~~gi~~v~lTTNG~lL--~~~ 112 (334)
T PRK00164 56 IERLVRAFAALGVRKIRL-------------------TGGEPLL--RKDLEDIIARLAALPGIRDLALTTNGYLL--ARR 112 (334)
T ss_pred HHHHHHHHHHCCCCEEEE-------------------CCCCCCC--CCCHHHHHHHHHHCCCCCCEEEECCHHHH--HHH
T ss_conf 999999999709627986-------------------0788432--35789999998632797517884448899--999
Q ss_pred HHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC-HHHHHCCCCCCCCEEEEEE
Q ss_conf 688984592162689899987218998877664224433243334557999873200330-1220002345782168887
Q gi|254780268|r 92 AEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF-PVLVKASAGGGGRGMRIAY 170 (443)
Q Consensus 92 a~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGy-PviiKp~~gGGG~Gi~vv~ 170 (443)
|+.+.++|+.-|--|-+++ |..+++++-..-.++ ..-+..+.|.+.|| |+=|-.+-- + =.
T Consensus 113 a~~Lk~aGL~riNISLDsL----d~~~f~~IT~~~~l~--------~Vl~gI~~A~~~G~~~vKiN~V~~---~----g~ 173 (334)
T PRK00164 113 AAALKDAGLTRVNVSLDSL----DPERFKAITGRDRLD--------QVLAGIDAALAAGLEPVKVNAVLM---K----GV 173 (334)
T ss_pred HHHHHHCCCCEEEEEEEEC----CHHHHHHHHCCCCHH--------HHHHHHHHHHHCCCCCEEEEEEEE---C----CC
T ss_conf 9999985998699711318----999999984899759--------999999999958987616899963---7----98
Q ss_pred ECHHHHHHHHHHHHH
Q ss_conf 506689999987543
Q gi|254780268|r 171 SENDLSEAIDQARSE 185 (443)
Q Consensus 171 ~~~el~~a~~~a~~e 185 (443)
|.+|+.+.++.+...
T Consensus 174 N~dEi~~li~~~~~~ 188 (334)
T PRK00164 174 NDDEIPDLLRWAKDR 188 (334)
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 989999999999646
No 305
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=53.94 E-value=17 Score=16.83 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=19.3
Q ss_pred CEEECCCHHHHHHHHCHHHHHHHHHHCCCCC
Q ss_conf 2162689899987218998877664224433
Q gi|254780268|r 100 IKFIGPSSEHIKIMGDKITAKKTAQQLGIPV 130 (443)
Q Consensus 100 i~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~ 130 (443)
+++|||+.=.-+.--|=..-|+++..+||-+
T Consensus 161 vNIlGpt~LGF~~r~D~~Ei~RLl~~lGi~V 191 (524)
T PRK02910 161 VNLLGPTALGFHNRDDLTELRRLLATLGIDV 191 (524)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 6760777567687788999999998759668
No 306
>PRK13136 consensus
Probab=53.71 E-value=17 Score=16.80 Aligned_cols=172 Identities=14% Similarity=0.127 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC----CCCEEECCCC-
Q ss_conf 99999999888809659998---585577187767585799918998530006989999999870----9989945853-
Q gi|254780268|r 12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT----GADAIHPGYG- 83 (443)
Q Consensus 12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~----~~daihPGyG- 83 (443)
|.-.++++++-+-|...+=+ +|||=..-+-.+.|.+-. |. +=.+.+.++++.++. .+--|.=+|-
T Consensus 26 e~s~~~~~~l~~~G~DiiElGiPfSDP~ADGpvIq~A~~rA-L~------~G~~~~~~~~~v~~~r~~~~~pivlM~Y~N 98 (253)
T PRK13136 26 ERSLESLLALAKGGVNILEVGVPFSDPVADGPVIQEASIRA-LA------QGTTLHDVLTLITSFRQHSEIPIILFTYFN 98 (253)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHHCCCCCCCEEEECCCH
T ss_conf 99999999999659998997899888666579999999999-98------699799999999982257898889986517
Q ss_pred -HHHCCHHHHHHHHHCCCE-EECCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHHH-CCCCHHHHHC
Q ss_conf -131097666889845921-62689--8999872189988776642244332433345579998-7320-0330122000
Q gi|254780268|r 84 -FLSENAKFAEILEDHHIK-FIGPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAM-PIAK-EIGFPVLVKA 157 (443)
Q Consensus 84 -fLsEn~~fa~~~e~~Gi~-fIGPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~-~~a~-~iGyPviiKp 157 (443)
++.-..+|.+.|.++|+. +|=|. .+ .....++.+++.|+..++.....+.++.+ ..++ .-||=-++=
T Consensus 99 ~i~~~G~~f~~~~~~~GvdGlIipDLP~e------E~~~~~~~~~~~~i~~I~liaPtt~~eRi~~i~~~a~gFiY~vs- 171 (253)
T PRK13136 99 PLLAAGDKIYQQMKSAGVDGCLVVDLPVE------EAAPHLTACKTAKIAPILLISPSTTQERLKKINEHGEGMLYYVC- 171 (253)
T ss_pred HHHHHHHHHHHHHHHCCCCCEECCCCCHH------HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEE-
T ss_conf 99997999999999749872006789977------76999999997588712552689988999999960898199985-
Q ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEE
Q ss_conf 234578216888750668999998754321258998168844342011
Q gi|254780268|r 158 SAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPR 205 (443)
Q Consensus 158 ~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~r 205 (443)
..| --|.+ -.-.+++.+.+.+.++.+ +-++.+-==|..+.
T Consensus 172 ~~G--vTG~~-~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e 211 (253)
T PRK13136 172 RPG--TTGVR-ATLPENFPAKMNQIKSMT-----SLPIVTGFGIANRK 211 (253)
T ss_pred CCC--CCCCC-CCCHHHHHHHHHHHHHHC-----CCCEEEECCCCCHH
T ss_conf 552--36876-446388999999999726-----99869971549999
No 307
>TIGR00838 argH argininosuccinate lyase; InterPro: IPR009049 This entry represents argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens. ; GO: 0004056 argininosuccinate lyase activity, 0042450 arginine biosynthetic process via ornithine.
Probab=53.70 E-value=9.4 Score=18.61 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=58.5
Q ss_pred HHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCC----H
Q ss_conf 999999987099899458531310976668898459216268989998721899887766422443324333455----7
Q gi|254780268|r 64 QQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVY----P 139 (443)
Q Consensus 64 ~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~----~ 139 (443)
+.|++.|.. .+++|-|||++| +=|+...=+.-- -+-+--+..|..+.-+++++.++. |=|++... +
T Consensus 136 ~~L~e~Ae~-~~~~~mPGYTHL----QrAQPi~lAHhL----LAY~~~l~RD~~RL~d~~kR~n~S-PLGsGAlAGt~f~ 205 (469)
T TIGR00838 136 KVLIELAEK-HVETLMPGYTHL----QRAQPITLAHHL----LAYAEMLERDYERLQDALKRVNVS-PLGSGALAGTSFP 205 (469)
T ss_pred HHHHHHHHC-CCCEECCCCCCC----CCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHCCCCC
T ss_conf 999998612-873661485101----350105699999----999989998899999999885048-8655032068987
Q ss_pred HHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHH
Q ss_conf 99987320033012200023457821688875066899999
Q gi|254780268|r 140 HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAID 180 (443)
Q Consensus 140 ~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~ 180 (443)
=+-...|+-+||=-+++=|--+ |.+.|=..+.+-
T Consensus 206 iDR~~~A~lLGF~~~~~NSlDa-------VSdRDFi~E~l~ 239 (469)
T TIGR00838 206 IDREYTAELLGFDAVTENSLDA-------VSDRDFIIELLF 239 (469)
T ss_pred CCHHHHHHHCCHHHHHHCCHHH-------HHHHHHHHHHHH
T ss_conf 6888897631867887520466-------520789999999
No 308
>TIGR01980 sufB FeS assembly protein SufB; InterPro: IPR010231 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufB, which is part of the SUF system and forms a complex with SufBCD.; GO: 0005515 protein binding, 0016226 iron-sulfur cluster assembly.
Probab=53.53 E-value=17 Score=16.87 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=20.8
Q ss_pred CHHHHHCCCCCCCCEEEE-EEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf 012200023457821688-87506689999987543212589981688443420
Q gi|254780268|r 151 FPVLVKASAGGGGRGMRI-AYSENDLSEAIDQARSEALAAFGNDAVYIEKYLEN 203 (443)
Q Consensus 151 yPviiKp~~gGGG~Gi~v-v~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~ 203 (443)
||=+||=-+ |++ |--.|..-.|++.|. +++..|| ||+.
T Consensus 158 YPdLVKeYF------~~v~VPp~DnKFAALn~AV-------WSGGsFv--YVPk 196 (469)
T TIGR01980 158 YPDLVKEYF------GKVCVPPSDNKFAALNGAV-------WSGGSFV--YVPK 196 (469)
T ss_pred CHHHHHHHC------CCCCCCCCCCHHHHHHHHE-------EECCEEE--EECC
T ss_conf 725678662------7002587634146640211-------0278579--8478
No 309
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=53.39 E-value=17 Score=16.77 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=27.6
Q ss_pred HHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 200023457821688875066899999875432125899816884
Q gi|254780268|r 154 LVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 154 iiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
|.||. .|-...+++++++.+.+++|.+.|... .++|+|+
T Consensus 121 ~~~~i----tk~~~~v~~~~~~~~~l~~A~~~A~~~--~gPV~l~ 159 (162)
T cd07038 121 MFEEI----TCAAARLTDPENAAEEIDRVLRTALRE--SRPVYIE 159 (162)
T ss_pred HHHHH----EEEEEEECCHHHHHHHHHHHHHHHHHC--CCCEEEE
T ss_conf 99867----328899299999999999999998428--9888996
No 310
>PRK12831 putative oxidoreductase; Provisional
Probab=53.22 E-value=17 Score=16.75 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=17.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 0686644709999999988880965999
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVA 30 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~ 30 (443)
|||.|++.|+-.+-...-+..+|+++.+
T Consensus 141 kkVAVIGsGPAGLsaA~~La~~G~~VtV 168 (464)
T PRK12831 141 KKVAVIGSGPAGLTCAGDLAKKGYDVTI 168 (464)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEE
T ss_conf 9899989768999999999976991799
No 311
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=53.19 E-value=17 Score=16.74 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=24.0
Q ss_pred CCCCCCCCCCCCC--C---CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 0236566542113--5---6225540344558899999999999998865154341024
Q gi|254780268|r 219 AIHFGERDCSVQR--R---NQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTI 272 (443)
Q Consensus 219 ~v~l~erdCSiQr--r---~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tv 272 (443)
.||+|..|-++.. + .+|+|- +|-.-.+++. .......+|.|+|.|
T Consensus 218 GVHLGQ~Dlpi~~aR~llG~~~iIG------~S~h~~ee~~---~A~~~gaDYig~Gpv 267 (345)
T PRK02615 218 GVHLGQEDLPLAVARQLLGPEKIIG------RSTTNPEELA---KAIAEGADYIGVGPV 267 (345)
T ss_pred EEEECCCCCCHHHHHHHCCCCCEEE------ECCCCHHHHH---HHHHCCCCEEEECCE
T ss_conf 7755888789999998739991899------6179999999---998639997998877
No 312
>TIGR01804 BADH betaine aldehyde dehydrogenase; InterPro: IPR011264 Under osmotic stress, betaine aldehyde dehydrogenase oxidises glycine betaine aldehyde into the osmoprotectant glycine betaine, via the second of two oxidation steps from exogenously supplied choline or betaine aldehyde. This choline-glycine betaine synthesis pathway can be found in Gram-positive and Gram-negative bacteria. In Escherichia coli, betaine aldehyde dehydrogenase (betB) is osmotically co-induced with choline dehydrogenase (betA) in the presence of choline. These dehydrogenases are located in a betaine gene cluster with the upstream choline transporter (betT) and transcriptional regulator (betI) . Similar to E. coli, betaine synthesis in Staphylococcus xylosus is also influenced by osmotic stress and the presence of choline with genes localised in a functionally equivalent gene cluster . Organisation of the betaine gene cluster in Sinorhizobium meliloti and Bacillus subtilis differs from that of E. coli by the absence of upstream choline transporter and transcriptional regulator homologues , . Additionally, Bacillus subtilis co-expresses a type II alcohol dehydrogenase with betaine aldehyde dehydrogenase instead of choline dehydrogenase as in E. coli, Staphylococcus xylosus, and Sinorhizobium meliloti . Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family. ; GO: 0008802 betaine-aldehyde dehydrogenase activity, 0006578 betaine biosynthetic process.
Probab=53.14 E-value=7.4 Score=19.34 Aligned_cols=158 Identities=25% Similarity=0.384 Sum_probs=81.6
Q ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCC-------CEEEEEEEEEEEE------CCEEEEEECCCCCCCCCC
Q ss_conf 234578216888750668999998754321258998-------1688443420110------331577734787023656
Q gi|254780268|r 158 SAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGND-------AVYIEKYLENPRH------IEVQIFGDGMGNAIHFGE 224 (443)
Q Consensus 158 ~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~-------~vlvEk~i~~~rh------iEvqVl~D~~g~~v~l~e 224 (443)
+...|||-=-+|.+..||..|+..|+.- .+|..+ +|||++-|...-. ++-=.+||+.+...-+|
T Consensus 244 tlELGGKsP~IvFdDADLe~A~d~Al~g--~Ff~~GQVCs~GtRv~V~~~ik~~F~~~L~~R~~~I~~Gd~fd~~T~~G- 320 (471)
T TIGR01804 244 TLELGGKSPLIVFDDADLELAVDQALLG--NFFSAGQVCSNGTRVFVHKKIKEKFLARLVERVKRIKLGDGFDEATEMG- 320 (471)
T ss_pred HHHCCCCCCCCEECCCCHHHHHHHHHHC--CCCCCCCEECCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCC-
T ss_conf 1201789874133156578886266622--4114671504774453246765999999999886210478867202478-
Q ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC--C-CCCCEEE-EEECCCCEE----EEECCCCCCCCCHH
Q ss_conf 65421135622554034455889999999999999886515--4-3410245-897288349----98227654332016
Q gi|254780268|r 225 RDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKID--Y-RGAGTIE-FLYENGQFY----FIEMNTRLQVEHPV 296 (443)
Q Consensus 225 rdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g--~-~g~~tvE-Fl~~~~~~y----flEvN~Rlqveh~v 296 (443)
|.+|.+.|+++..|-.+.- +=| + .|-..-+ -=+++|-|| |-.++.-... |
T Consensus 321 ------------------PliSa~~R~kv~~Yi~~gk-~EgA~l~~GG~~p~~~~l~~G~f~~PTvf~d~~~~M~I---v 378 (471)
T TIGR01804 321 ------------------PLISAEHRDKVLSYIEKGK-EEGARLATGGKVPEDEGLDNGFFIEPTVFTDCTDDMTI---V 378 (471)
T ss_pred ------------------CCCCHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCEECCEEEECCCCCCEE---E
T ss_conf ------------------7101777889999998744-04988977785237777678723667367515899738---9
Q ss_pred HHHHHC-------CCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHCCCCCC
Q ss_conf 788632-------5620112322210222221----13333201245330245662
Q gi|254780268|r 297 TEAITG-------IDLVHEQIYVASENRLSVQ----QKDITFSGHAIECRINAEDP 341 (443)
Q Consensus 297 te~~tg-------vdlv~~~~~~a~g~~l~~~----~~~i~~~g~aie~Ri~aEdp 341 (443)
-|+|-| .+-=.+.|+.|....-++. -.|+. ++|-+-.||-|=--
T Consensus 379 rEEiFGPV~~v~~F~~E~EvI~~ANdt~yGLAagv~t~Dl~-ra~rv~~~L~~Gt~ 433 (471)
T TIGR01804 379 REEIFGPVMSVLTFSSEDEVIARANDTEYGLAAGVFTADLE-RAHRVAARLKAGTV 433 (471)
T ss_pred EEEECCCEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHH-HHHHHHHHHCCCEE
T ss_conf 87515867665135876999985077513036788887678-88999987216627
No 313
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=53.09 E-value=17 Score=16.73 Aligned_cols=127 Identities=20% Similarity=0.303 Sum_probs=76.8
Q ss_pred HHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCC----HH
Q ss_conf 99999888809659998585577187767585799918998530006989999999870998994585313109----76
Q gi|254780268|r 15 LRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSEN----AK 90 (443)
Q Consensus 15 ~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn----~~ 90 (443)
.||+|+|+++|+..|=+ =||-|... -|+..||+-.++.+..-|= |--| ..
T Consensus 52 ~~~~~~a~~fGV~kvKl-------------------TGGEPlLR--~D~~~Ii~~~~~~~~~~vS-----mTTNG~LL~~ 105 (324)
T TIGR02668 52 ERIVRVASEFGVRKVKL-------------------TGGEPLLR--KDLIEIIRRIKDYGIKDVS-----MTTNGILLEK 105 (324)
T ss_pred HHHHHHHHHCCCCEEEE-------------------CCCCCCHH--HHHHHHHHHHCCCCCEEEE-----CCCCHHHHHH
T ss_conf 99999998708832775-------------------17874345--6699999861467503442-----0303144898
Q ss_pred HHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC-HHHHHCCCCCCCCEEEEE
Q ss_conf 6688984592162689899987218998877664224433243334557999873200330-122000234578216888
Q gi|254780268|r 91 FAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF-PVLVKASAGGGGRGMRIA 169 (443)
Q Consensus 91 fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGy-PviiKp~~gGGG~Gi~vv 169 (443)
.|+.+.+|||.-|=-|-+++ |+..+|++= |. +.......-+..+.|-+.|+ ||=|=-+--.|
T Consensus 106 ~A~~Lk~AGLdRVNVSLdtl----d~e~Y~kIT---G~---~~~~~~~Vi~GI~~A~~~GL~PVKlN~Vvl~G------- 168 (324)
T TIGR02668 106 LAKKLKEAGLDRVNVSLDTL----DPEKYKKIT---GQ---SRDALDRVIEGIESAVDAGLTPVKLNMVVLKG------- 168 (324)
T ss_pred HHHHHHHHCCCEEEECCCCC----CHHHHHHHC---CC---CCCHHHHHHHHHHHHHHCCCCCEEEEEEEECC-------
T ss_conf 99999982856131202678----867888644---89---98607899999999997289813788887547-------
Q ss_pred EECHH-HHHHHHHHHH
Q ss_conf 75066-8999998754
Q gi|254780268|r 170 YSEND-LSEAIDQARS 184 (443)
Q Consensus 170 ~~~~e-l~~a~~~a~~ 184 (443)
-|.++ +.+.++.|..
T Consensus 169 ~N~~~~~~~m~~f~~~ 184 (324)
T TIGR02668 169 INDNEEIPDMVEFAAD 184 (324)
T ss_pred CCCCCCHHHHHHHHHH
T ss_conf 7885007999999987
No 314
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=53.00 E-value=17 Score=16.72 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=28.7
Q ss_pred HHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 200023457821688875066899999875432125899816884434
Q gi|254780268|r 154 LVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYL 201 (443)
Q Consensus 154 iiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i 201 (443)
..|-+.+-|.+|.+ |++++||.++++.|... +++.+||=-|
T Consensus 131 f~~iA~a~G~~~~~-v~~~~el~~al~~a~~~------~~p~liev~i 171 (172)
T cd02004 131 YDLVAEAFGGKGEL-VTTPEELKPALKRALAS------GKPALINVII 171 (172)
T ss_pred HHHHHHHCCCEEEE-ECCHHHHHHHHHHHHHC------CCCEEEEEEC
T ss_conf 78999975982899-78999999999999958------9969999981
No 315
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=52.95 E-value=4.3 Score=21.01 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=36.0
Q ss_pred CCEEEECCC--CCCCEECCCCCCC---EEEEEEECCCHHHHHHHHHHHHHHCEECCCCCCHH
Q ss_conf 844677760--2387707776843---38999955998999999998765408826377888
Q gi|254780268|r 360 LGIRMDSAS--YQGYTVPSYYDSL---IAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIP 416 (443)
Q Consensus 360 ~gvRvDt~~--~~G~~i~~~yDsm---laKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv~TN~~ 416 (443)
.|||.|||- +.+..+--.||.+ =.||++++.==++.+.++.+.=.....-||-||+-
T Consensus 251 ~GVR~DSGD~~~~~~~~r~~ld~~G~~~~kIv~SdgLd~~~i~~l~~~g~~id~FGIGT~L~ 312 (327)
T cd01570 251 VGVRIDSGDLAYLSKEARKMLDEAGLTKVKIVASNDLDEYTIAALNAQGAPIDAFGVGTRLV 312 (327)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 67984798879999999999987799997899979999999999997799734996787612
No 316
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=52.90 E-value=17 Score=16.71 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=12.4
Q ss_pred ECCCCCCCCHHCCHHHHHHHHHHCCCCEEE-CCCCH
Q ss_conf 918998530006989999999870998994-58531
Q gi|254780268|r 50 CIGPPSSKDSYLNIQQIVAACEVTGADAIH-PGYGF 84 (443)
Q Consensus 50 ~i~~~~~~~sYldi~~ii~~a~~~~~daih-PGyGf 84 (443)
.++++..+.+|-=-+ =++.+-.++|.+. =|.||
T Consensus 44 Lvp~g~dPH~yep~p--~d~~~l~~Adliv~~G~~l 77 (287)
T cd01137 44 IVPPGADPHEYEPTP--SDIKKLSKADLILYNGLNL 77 (287)
T ss_pred ECCCCCCCCCCCCCH--HHHHHHHCCCEEEECCCCC
T ss_conf 218798975688999--9999995799999858874
No 317
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=52.45 E-value=18 Score=16.67 Aligned_cols=25 Identities=16% Similarity=-0.032 Sum_probs=12.7
Q ss_pred HHHHHHHHHHCCCCEEECCCCHHHC
Q ss_conf 8999999987099899458531310
Q gi|254780268|r 63 IQQIVAACEVTGADAIHPGYGFLSE 87 (443)
Q Consensus 63 i~~ii~~a~~~~~daihPGyGfLsE 87 (443)
.+.|.++.++.+.++|.---+-+||
T Consensus 70 ~~~I~~~~~~y~P~~I~V~tTC~se 94 (417)
T cd01966 70 EEALDTLAERAKPKVIGLLSTGLTE 94 (417)
T ss_pred HHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 9999999985298779996553143
No 318
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=52.27 E-value=16 Score=16.92 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=27.6
Q ss_pred HHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 22000234578216888750668999998754321258998168844
Q gi|254780268|r 153 VLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEK 199 (443)
Q Consensus 153 viiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk 199 (443)
=..|-+.+-|.+|.+ |.+++||.+++++|+.. +++.+||=
T Consensus 137 d~~~iA~a~G~~~~~-v~~~~el~~al~~a~~~------~~p~vIev 176 (178)
T cd02002 137 DFAAIAKAFGVEAER-VETPEELDEALREALAE------GGPALIEV 176 (178)
T ss_pred CHHHHHHHCCCCEEE-ECCHHHHHHHHHHHHHC------CCCEEEEE
T ss_conf 999999983994899-78999999999999838------99689999
No 319
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=52.25 E-value=18 Score=16.64 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=21.6
Q ss_pred EECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE------EEECCEEEEEECCC
Q ss_conf 7506689999987543212589981688443420------11033157773478
Q gi|254780268|r 170 YSENDLSEAIDQARSEALAAFGNDAVYIEKYLEN------PRHIEVQIFGDGMG 217 (443)
Q Consensus 170 ~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~------~rhiEvqVl~D~~g 217 (443)
++.++....++.|+...+. |-.-+++|- ++. .+.+.+-++|-|.|
T Consensus 150 k~~~~a~~l~~dA~ale~A--Ga~~ivlE~-vp~~la~~It~~~~IPtIGIGAG 200 (240)
T cd06556 150 RGDEAGEQLIADALAYAPA--GADLIVMEC-VPVELAKQITEALAIPLAGIGAG 200 (240)
T ss_pred CCHHHHHHHHHHHHHHHHC--CCEEEEEEC-CCHHHHHHHHHCCCCCEEEECCC
T ss_conf 7689999999999999847--984998745-84999999995699989972778
No 320
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=52.10 E-value=18 Score=16.63 Aligned_cols=128 Identities=19% Similarity=0.209 Sum_probs=56.6
Q ss_pred HHHHHHHHHHCCCCEEE--CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCC---CCCCCCC
Q ss_conf 89999999870998994--585313109766688984592162689899987218998877664224433---2433345
Q gi|254780268|r 63 IQQIVAACEVTGADAIH--PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPV---VPGSGEV 137 (443)
Q Consensus 63 i~~ii~~a~~~~~daih--PGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~---~p~~~~~ 137 (443)
.+.|++..++.|++-|+ ||= .+..|-.++.+.++.||....|......==--+| +-.+.||-. -||. .
T Consensus 18 a~~lv~~L~~~GV~~vFGvpG~----~~~~l~dal~~~~i~~v~~rhE~~A~~mAdgYar-~tg~~gv~~~t~GPG~--~ 90 (570)
T PRK06725 18 AGHVIQCLKKLGVTTVFGYPGG----AILPVYDALYESGLKHILTRHEQAAIHAAEGYAR-ASGKVGVVFATSGPGA--T 90 (570)
T ss_pred HHHHHHHHHHCCCCEEEECCCC----CHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHH-HHCCCEEEEEECCHHH--H
T ss_conf 9999999998799999976764----2799999997469939804978999999999999-9789989998057689--9
Q ss_pred CHHHHHHHHHCCCCHHHHHCCC------CCC--------------CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 5799987320033012200023------457--------------82168887506689999987543212589981688
Q gi|254780268|r 138 YPHTAMPIAKEIGFPVLVKASA------GGG--------------GRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYI 197 (443)
Q Consensus 138 ~~~ea~~~a~~iGyPviiKp~~------gGG--------------G~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlv 197 (443)
+.-..+.-|..=+-||++=... |.+ .|-...+++.+++.+.+++|.+.+.+. .-++|++
T Consensus 91 N~~~gl~~A~~~~~Pvl~i~G~~~~~~~g~~~~q~~d~~~~~~p~tK~~~~v~~~~~i~~~l~~A~~~A~sg-rpGPV~l 169 (570)
T PRK06725 91 NLVTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESG-RPGPVLI 169 (570)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCCHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHC-CCCCEEE
T ss_conf 999999999973998699938897110588865310388661420035232189999999999999998647-9976699
Q ss_pred E
Q ss_conf 4
Q gi|254780268|r 198 E 198 (443)
Q Consensus 198 E 198 (443)
+
T Consensus 170 ~ 170 (570)
T PRK06725 170 D 170 (570)
T ss_pred E
T ss_conf 6
No 321
>PRK11749 putative oxidoreductase; Provisional
Probab=52.01 E-value=18 Score=16.62 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=21.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 06866447099999999888809659998
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAV 31 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v 31 (443)
|||.|++.|+-.+-....+.++|+++.+.
T Consensus 141 kkVAIIGaGPAGLsAA~~Lar~G~~VtVf 169 (460)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLARKGYDVTIF 169 (460)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 98999896789999999999769847997
No 322
>PRK13113 consensus
Probab=51.71 E-value=18 Score=16.59 Aligned_cols=173 Identities=14% Similarity=0.216 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCC-----CCEEECCCC-
Q ss_conf 9999999888809659998---5855771877675857999189985300069899999998709-----989945853-
Q gi|254780268|r 13 IALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTG-----ADAIHPGYG- 83 (443)
Q Consensus 13 ia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~-----~daihPGyG- 83 (443)
.-.++++++.+.|...+=+ +|||=..-|-.+.|.+.. |. +=.+.+.++++.++-. +--|.=||-
T Consensus 32 ~s~~~~~~l~~~GaDiiElGiPFSDP~ADGPvIq~A~~rA-L~------~G~~~~~~~~~v~~~r~~~~~~PivlM~Y~N 104 (263)
T PRK13113 32 TSLEVMRGLPAAGVDIIELGMPFTDPMADGPTIQLAGQRA-LE------GGMTLDRTLDMVRAFRKEDDTTPIVMMGYYN 104 (263)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHHHCCCCCCCEEEEECHH
T ss_conf 9999999999769999997898888776589999999999-97------7983889999999751238998889983136
Q ss_pred -HHHCC-HHHHHHHHHCCCE-EECCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHH-CCCCHHHHH
Q ss_conf -13109-7666889845921-62689--899987218998877664224433243334557999-87320-033012200
Q gi|254780268|r 84 -FLSEN-AKFAEILEDHHIK-FIGPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTA-MPIAK-EIGFPVLVK 156 (443)
Q Consensus 84 -fLsEn-~~fa~~~e~~Gi~-fIGPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea-~~~a~-~iGyPviiK 156 (443)
++.-. ..|.+.|.++|+. +|=|. .+ .-...+..+++.|+..++.....++++. ...++ .-||=..+=
T Consensus 105 ~i~~~G~e~F~~~~~~~GvdGvIipDLP~e------E~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~gFiY~Vs 178 (263)
T PRK13113 105 PIYSRGVDRFLAEAKEAGIDGLIVVDLPPE------EDSELCLPAQAAGLNFIRLATPTTDDRRLPKVLQNTSGFVYYVS 178 (263)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCHH------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 898856999999987779436971799978------88999999997798679994799999999999833898489983
Q ss_pred CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEC
Q ss_conf 023457821688875066899999875432125899816884434201103
Q gi|254780268|r 157 ASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHI 207 (443)
Q Consensus 157 p~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhi 207 (443)
..|- -|.+ -....++.+.+++.++.. +-++.+-==|..+.|+
T Consensus 179 -~~Gv--TG~~-~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGI~~~e~~ 220 (263)
T PRK13113 179 -ITGI--TGAA-AAQAADVAPEVARIKAAT-----DLPVIVGFGITTPEAA 220 (263)
T ss_pred -CCCC--CCCC-CCCHHHHHHHHHHHHHCC-----CCCEEEECCCCCHHHH
T ss_conf -4556--6877-554377999999998547-----9988998378998999
No 323
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=51.63 E-value=5.3 Score=20.38 Aligned_cols=57 Identities=26% Similarity=0.269 Sum_probs=40.2
Q ss_pred CCCEEEECCC--CCCCEECCCCCCC-----EEEEEEECC-CHHHHHHHHHHHHH-HCEECCCCCCH
Q ss_conf 9844677760--2387707776843-----389999559-98999999998765-40882637788
Q gi|254780268|r 359 GLGIRMDSAS--YQGYTVPSYYDSL-----IAKLIVHGK-NRKECMMRLNRALN-EIIIDGIKTTI 415 (443)
Q Consensus 359 ~~gvRvDt~~--~~G~~i~~~yDsm-----laKiI~~g~-~R~~Ai~~l~~aL~-~~~I~Gv~TN~ 415 (443)
-.|||.|||- +.+..+--.||.+ -.|+|.+|. |-+.+++....... .-.+-||-|++
T Consensus 264 ~~gvR~DSGDp~~~~~~~~~~ld~~G~~~~~~~iv~S~~ld~e~~i~~~~~~~~~~~~~FGVGT~l 329 (343)
T cd01567 264 LLGVRLDSGDPVELIKKVRKHLDELGIDLNKKKIIISGDLDTEEAIELLLEQGASPNDAFGVGTSL 329 (343)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 526754999859999999999997599978738999899988999999997389875399708560
No 324
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=51.54 E-value=18 Score=16.57 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=14.1
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 01123222102222211333320124533
Q gi|254780268|r 306 VHEQIYVASENRLSVQQKDITFSGHAIEC 334 (443)
Q Consensus 306 v~~~~~~a~g~~l~~~~~~i~~~g~aie~ 334 (443)
+...+++..++|.-++|+++..+|.-+.+
T Consensus 278 iAi~Ikl~S~GPVff~Q~RvG~~Gk~F~~ 306 (442)
T TIGR03013 278 TALAIKLESGGPVLYRQERVGLNGRPFNL 306 (442)
T ss_pred HHHHHHHCCCCCEEEECCEEECCCEEEEE
T ss_conf 99999741899869988564328736889
No 325
>pfam03575 Peptidase_S51 Peptidase family S51.
Probab=51.45 E-value=18 Score=16.56 Aligned_cols=77 Identities=21% Similarity=0.209 Sum_probs=50.8
Q ss_pred HHHHHHHHCCCEEEEECCC---HHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHH
Q ss_conf 9999888809659998585---5771877675857999189985300069899999998709989945853131097666
Q gi|254780268|r 16 RILRACKELGIPTVAVHST---ADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAKFA 92 (443)
Q Consensus 16 riira~~elGi~tv~v~s~---~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa 92 (443)
+..++.+.||++...++.- .+.....+..||-.|. +++ |.-.+++.-++++.|.+ +.
T Consensus 4 ~~~~~f~~lg~~v~~l~~~~~~~~~~~~~i~~ad~I~v-~GG-------nt~~ll~~l~~~g~~~~------------l~ 63 (154)
T pfam03575 4 KFREALEKLGLEVSGLHLFTPSVEDIEAKILKADVIYV-GGG-------NTFHLLKLLRETGLDDI------------IR 63 (154)
T ss_pred HHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEE-CCC-------HHHHHHHHHHHCCCHHH------------HH
T ss_conf 99999997699778986667974729999985999998-987-------59999999998682999------------99
Q ss_pred HHHHHCCCEEECCCHHHHHHH
Q ss_conf 889845921626898999872
Q gi|254780268|r 93 EILEDHHIKFIGPSSEHIKIM 113 (443)
Q Consensus 93 ~~~e~~Gi~fIGPs~~ai~~~ 113 (443)
+ .-++|..++|-|+-++-..
T Consensus 64 ~-~~~~G~~~~G~SAGa~i~~ 83 (154)
T pfam03575 64 E-AVQAGLPYIGWSAGANVAG 83 (154)
T ss_pred H-HHHCCCEEEEECHHHHHCC
T ss_conf 9-9985977885060466434
No 326
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=51.21 E-value=19 Score=16.53 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=16.3
Q ss_pred EEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 88875066899999875432125899816884
Q gi|254780268|r 167 RIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 167 ~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
..+.+++++.+.+++|.+.+... .-++|+++
T Consensus 138 ~~v~~~~~i~~~l~~A~~~a~~~-rpGPV~l~ 168 (588)
T CHL00099 138 YVVRDPRDMSRIVAEAFYIAKHG-RPGPVLID 168 (588)
T ss_pred EEECCHHHHHHHHHHHHHHHHCC-CCCEEEEE
T ss_conf 68547556299999999997418-98408995
No 327
>PRK09414 glutamate dehydrogenase; Provisional
Probab=50.97 E-value=19 Score=16.51 Aligned_cols=14 Identities=21% Similarity=0.000 Sum_probs=8.8
Q ss_pred HHHHCCCCCCCCEE
Q ss_conf 22000234578216
Q gi|254780268|r 153 VLVKASAGGGGRGM 166 (443)
Q Consensus 153 viiKp~~gGGG~Gi 166 (443)
+-=||..-||+.|=
T Consensus 191 ~TGKp~~~GGs~gR 204 (446)
T PRK09414 191 LTGKGLSFGGSLIR 204 (446)
T ss_pred ECCCCCCCCCCCCC
T ss_conf 68997210688687
No 328
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=50.91 E-value=19 Score=16.50 Aligned_cols=122 Identities=20% Similarity=0.266 Sum_probs=58.8
Q ss_pred CCCHHHH-HHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCC------EEECC
Q ss_conf 4709999-9999888809659998585577187767585799918998530006989999999870998------99458
Q gi|254780268|r 9 NRGEIAL-RILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGAD------AIHPG 81 (443)
Q Consensus 9 nrGeia~-riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~d------aihPG 81 (443)
|+..+++ .+++++.++|++.|+.-+- |.. ..| .+. .+|++...+++.+|+..-| |.+|-
T Consensus 88 d~n~~~i~~~l~~~~~~Gi~~ilaLrG-Dpp-----~g~-------~~~-~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe 153 (291)
T COG0685 88 DRNRIEIISILKGAAALGIRNILALRG-DPP-----AGD-------KPG-GKDLYSVDLVELIKKMRGGIFDIGVAAYPE 153 (291)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECC-CCC-----CCC-------CCC-CCCCCHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 889899999999999818855999458-987-----778-------878-654689999999998568973589986788
Q ss_pred CCHHHCCHH-----HHHHHHHCCCEEECC----CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCC
Q ss_conf 531310976-----668898459216268----98999872189988776642244332433345-579998732003
Q gi|254780268|r 82 YGFLSENAK-----FAEILEDHHIKFIGP----SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV-YPHTAMPIAKEI 149 (443)
Q Consensus 82 yGfLsEn~~-----fa~~~e~~Gi~fIGP----s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~-~~~ea~~~a~~i 149 (443)
+=..|++.. +.+.++ +|-.|+=+ +.+.+....+|.+. ....+|+.||.... +...+.-++...
T Consensus 154 ~h~~s~~~~~d~~~lkrKv~-aGAd~~iTQ~~fd~e~~~~~~~~~~~----~g~~~pI~~Gimpi~~~~~~~~~~~~~ 226 (291)
T COG0685 154 GHPESKDVKEDIKRLKRKVD-AGADFFITQFFFDVEAFERFAERVRA----AGIDIPIIPGIMPVTNFKQLLRFASLC 226 (291)
T ss_pred CCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCHHHHHHHHHHHHH----CCCCCCEEEEEEEECCHHHHHHHHHHC
T ss_conf 78441005789999999986-58865764201689999999999986----389985562131013568999999833
No 329
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=50.60 E-value=19 Score=16.47 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=13.3
Q ss_pred HHCCHHHHHHHHHHCCCCEE
Q ss_conf 00698999999987099899
Q gi|254780268|r 59 SYLNIQQIVAACEVTGADAI 78 (443)
Q Consensus 59 sYldi~~ii~~a~~~~~dai 78 (443)
.+.++..+++.|.+.|...+
T Consensus 14 g~~~~~e~~~~A~~~g~~~~ 33 (237)
T COG1387 14 GEATPEEMVEAAIELGLEYI 33 (237)
T ss_pred CCCCHHHHHHHHHHCCCCEE
T ss_conf 77899999999997399659
No 330
>KOG2518 consensus
Probab=50.52 E-value=19 Score=16.46 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHH
Q ss_conf 0999999998888096599985855771877675
Q gi|254780268|r 11 GEIALRILRACKELGIPTVAVHSTADSGAMHVRL 44 (443)
Q Consensus 11 Geia~riira~~elGi~tv~v~s~~D~~a~~~~~ 44 (443)
-++|-++|+.||.+|++.|+---+.|+...+...
T Consensus 127 ~~ma~~lI~~~r~~nVe~IVAPyEADAQlayL~~ 160 (556)
T KOG2518 127 PEMAHKLIQYLRSQNVEYIVAPYEADAQLAYLER 160 (556)
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHH
T ss_conf 9999999999997697558657623212378876
No 331
>pfam06189 5-nucleotidase 5'-nucleotidase. This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (EC:3.1.3.5).
Probab=50.43 E-value=14 Score=17.47 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999998888
Q gi|254780268|r 12 EIALRILRACKE 23 (443)
Q Consensus 12 eia~riira~~e 23 (443)
...+|++++++.
T Consensus 47 dtGlRvfnSI~h 58 (263)
T pfam06189 47 DTGLRVFNSINH 58 (263)
T ss_pred HHHHHHHHHHHH
T ss_conf 347899998997
No 332
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=49.99 E-value=19 Score=16.40 Aligned_cols=13 Identities=23% Similarity=0.181 Sum_probs=7.2
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 8999999987099
Q gi|254780268|r 63 IQQIVAACEVTGA 75 (443)
Q Consensus 63 i~~ii~~a~~~~~ 75 (443)
...|++...+.|+
T Consensus 43 ~~~vl~~l~~~G~ 55 (382)
T cd06839 43 NPALVAHLRQLGD 55 (382)
T ss_pred CHHHHHHHHHCCC
T ss_conf 9999999997499
No 333
>CHL00176 ftsH cell division protein; Validated
Probab=49.96 E-value=19 Score=16.40 Aligned_cols=15 Identities=7% Similarity=0.206 Sum_probs=8.8
Q ss_pred HHHHHHHHHHCCCCE
Q ss_conf 899999998709989
Q gi|254780268|r 63 IQQIVAACEVTGADA 77 (443)
Q Consensus 63 i~~ii~~a~~~~~da 77 (443)
-+.+++...+.+++-
T Consensus 96 ~~~~~~~l~~~~v~~ 110 (631)
T CHL00176 96 ASELIQKLKEANVDI 110 (631)
T ss_pred CHHHHHHHHHCCCEE
T ss_conf 889999999869828
No 334
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=49.93 E-value=19 Score=16.40 Aligned_cols=12 Identities=42% Similarity=0.650 Sum_probs=6.7
Q ss_pred HCCCEEEEECCC
Q ss_conf 809659998585
Q gi|254780268|r 23 ELGIPTVAVHST 34 (443)
Q Consensus 23 elGi~tv~v~s~ 34 (443)
.+|++|.+|+..
T Consensus 5 ~~~f~T~~vHag 16 (426)
T COG2873 5 NWGFETLAVHAG 16 (426)
T ss_pred CCCCCHHHHCCC
T ss_conf 668205553078
No 335
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family; InterPro: IPR004652 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) and includes NifR3 itself, from Rhodobacter capsulatus. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes , and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. ; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=49.74 E-value=19 Score=16.38 Aligned_cols=92 Identities=24% Similarity=0.332 Sum_probs=49.0
Q ss_pred HCCHHHHHHHHHHCCCCEEE----C-------CCCHHHCC-HHHHHHHHHCCCE------------EECC-CHHHHHHHH
Q ss_conf 06989999999870998994----5-------85313109-7666889845921------------6268-989998721
Q gi|254780268|r 60 YLNIQQIVAACEVTGADAIH----P-------GYGFLSEN-AKFAEILEDHHIK------------FIGP-SSEHIKIMG 114 (443)
Q Consensus 60 Yldi~~ii~~a~~~~~daih----P-------GyGfLsEn-~~fa~~~e~~Gi~------------fIGP-s~~ai~~~g 114 (443)
-|.-+.++.-..+.=++||- | ||-.-.-| .++|+..+++|+. |=|+ ..+.|+..
T Consensus 121 Ll~~p~~~~~iv~~vV~AV~~~~iPVTVK~R~GWD~~h~n~~~~a~~a~~~Ga~Av~lHGRTRaQ~Y~G~A~wd~I~~v- 199 (336)
T TIGR00737 121 LLRDPDLIGKIVKAVVDAVDAQDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYEGEANWDIIARV- 199 (336)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHCCCCCCCCCHHHHHHH-
T ss_conf 2358689999999999875187665166551563624488899999998724000211100000157887606899999-
Q ss_pred CHHHHHHHHH-HCCCCCCCCCCCCCHHHHHHHHHC------------CCCHHHHHC
Q ss_conf 8998877664-224433243334557999873200------------330122000
Q gi|254780268|r 115 DKITAKKTAQ-QLGIPVVPGSGEVYPHTAMPIAKE------------IGFPVLVKA 157 (443)
Q Consensus 115 DK~~~k~~a~-~~GVP~~p~~~~~~~~ea~~~a~~------------iGyPviiKp 157 (443)
|+.+. .-.|||+-.-...++++|+...++ +|.|-|++-
T Consensus 200 -----Kq~v~~~GeiPVigNGDi~~~~~A~~~L~~TG~DGvm~gRG~lG~PWl~~~ 250 (336)
T TIGR00737 200 -----KQAVRKEGEIPVIGNGDIFSPEDAKAMLETTGADGVMIGRGALGNPWLFKQ 250 (336)
T ss_pred -----HHHHHCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEEEECHHCCCCHHHHH
T ss_conf -----999716875332227742467899999863788689850022278758999
No 336
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=49.16 E-value=20 Score=16.32 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=19.0
Q ss_pred HHHHHHHHHCCCEEEC-CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 7666889845921626-89899987218998877664224433243334557999873
Q gi|254780268|r 89 AKFAEILEDHHIKFIG-PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPI 145 (443)
Q Consensus 89 ~~fa~~~e~~Gi~fIG-Ps~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~ 145 (443)
..|++.+++.|+.|+= |-+. .|-...+++.++.++|+.-+-...+..+...+
T Consensus 111 ~~~~~~l~~~~l~wiEeP~~~-----~d~~~~~~l~~~~~ipIa~gE~~~~~~~~~~~ 163 (229)
T cd00308 111 IRLIRALEKYGLAWIEEPCAP-----DDLEGYAALRRRTGIPIAADESVTTVDDALEA 163 (229)
T ss_pred HHHHHHHHHCCCCEEECCCCC-----CCHHHHHHHHCCCCCCEECCCCCCCHHHHHHH
T ss_conf 999998521398376467766-----27589999961369986378767899999999
No 337
>TIGR02386 rpoC_TIGR DNA-directed RNA polymerase, beta' subunit; InterPro: IPR012754 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the beta-prime subunit, RpoC, found in most bacteria. It excludes some, mainly cyanobacterial, species where RpoC is replaced by two homologous proteins that include an additional domain. One arm of the "claw" is predominantly formed by this subunit, the other being predominantly formed by the beta subunit. The active site of the enzyme is defined by three invariant aspartate residues within the beta-prime subunit .; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.
Probab=49.14 E-value=19 Score=16.47 Aligned_cols=100 Identities=22% Similarity=0.247 Sum_probs=53.5
Q ss_pred EEEEEEEEEEEECCEEEEEECCCC---C-CCCCCCC---CCC----CCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 688443420110331577734787---0-2365665---421----1356225540344-55889999999999999886
Q gi|254780268|r 195 VYIEKYLENPRHIEVQIFGDGMGN---A-IHFGERD---CSV----QRRNQKIWEEAHS-PVISAQDRTEIGETCVKAMK 262 (443)
Q Consensus 195 vlvEk~i~~~rhiEvqVl~D~~g~---~-v~l~erd---CSi----Qrr~qkiiEeaPa-p~l~~~~~~~i~~~A~~~~~ 262 (443)
|..|+=-..-++|+|..+.+|.++ . ..|.+|= .|. +-..+|+| +++ ..|+.+..+++.+.. .+
T Consensus 943 vv~e~DCGT~~Gi~v~ai~~g~~~el~~IesL~DR~vGR~~~edv~~P~~g~~~--~~~N~lI~~~~a~~i~~~G---i~ 1017 (1552)
T TIGR02386 943 VVREEDCGTEEGIEVEAIVEGKDDELEVIESLKDRIVGRYSAEDVVDPETGKLV--AKANTLITEEIAEKIENLG---IE 1017 (1552)
T ss_pred EEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCEEEEEEEEEEEECCCCCEEE--EECCCCCCHHHHHHHHHCC---CC
T ss_conf 887168788477789999847886488986042116732898753128877288--7157731179999998579---66
Q ss_pred HHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 51543410245897288349982276543320167886325620112322210222
Q gi|254780268|r 263 KIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRL 318 (443)
Q Consensus 263 ~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l 318 (443)
+|..+++-|+| -+|+|=.+|+|.||.... .+-.|+..
T Consensus 1018 ~v~iRS~LTC~------------------~~~GVC~kCYG~dLat~~-~v~~GEAV 1054 (1552)
T TIGR02386 1018 KVKIRSVLTCE------------------SKHGVCQKCYGRDLATGK-LVEIGEAV 1054 (1552)
T ss_pred EEEECCCEEEC------------------CCCCCEEECCCCCCCCCC-CCCCCCCC
T ss_conf 89963421406------------------898823100121000485-21136852
No 338
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=48.92 E-value=20 Score=16.29 Aligned_cols=10 Identities=20% Similarity=0.401 Sum_probs=3.9
Q ss_pred HHHHHHHHCC
Q ss_conf 6668898459
Q gi|254780268|r 90 KFAEILEDHH 99 (443)
Q Consensus 90 ~fa~~~e~~G 99 (443)
++|..+.+.|
T Consensus 151 E~A~~l~~~G 160 (427)
T TIGR03385 151 EMVEALRERG 160 (427)
T ss_pred HHHHHHHHCC
T ss_conf 9999999769
No 339
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=48.85 E-value=4.5 Score=20.92 Aligned_cols=89 Identities=17% Similarity=0.287 Sum_probs=52.6
Q ss_pred HHHHHHHHCCCCCCCCCCCC--CHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEE----ECHHHHHHHHHHHHHHHCCCC
Q ss_conf 88776642244332433345--579998732003301220002345782168887----506689999987543212589
Q gi|254780268|r 118 TAKKTAQQLGIPVVPGSGEV--YPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAY----SENDLSEAIDQARSEALAAFG 191 (443)
Q Consensus 118 ~~k~~a~~~GVP~~p~~~~~--~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~----~~~el~~a~~~a~~ea~~~fg 191 (443)
..|+.+.++||=---+..+. +--|+.+|+..+||+++.- |||+.--. +++.-+ .|+... +
T Consensus 143 ~Lk~~Ad~~GviyS~~~GDeP~~~mEL~efa~a~G~evv~a------GKGkNnpl~~~a~Pdt~~-------eeA~r~-~ 208 (438)
T COG4091 143 ILKQQADAAGVIYSGGAGDEPSSCMELYEFASALGFEVVSA------GKGKNNPLNIDANPDTYE-------EEAKRR-N 208 (438)
T ss_pred HHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEEC------CCCCCCCCCCCCCCCHHH-------HHHHHC-C
T ss_conf 89987765475885467897177878999998649758861------577689876678981478-------887604-8
Q ss_pred CCCEEEEEEEEEEEE-CCEEEEEECCCCCC
Q ss_conf 981688443420110-33157773478702
Q gi|254780268|r 192 NDAVYIEKYLENPRH-IEVQIFGDGMGNAI 220 (443)
Q Consensus 192 d~~vlvEk~i~~~rh-iEvqVl~D~~g~~v 220 (443)
-.+-|+-.|.+|.+- +|.-.+++.+|-+.
T Consensus 209 ~n~~Ml~sF~DGsKtmvEMaavANaTGl~p 238 (438)
T COG4091 209 MNPRMLVSFQDGSKTMVEMAAVANATGLVP 238 (438)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHCCCCCCC
T ss_conf 986786543143089999999854657789
No 340
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=48.74 E-value=20 Score=16.27 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHCC
Q ss_conf 099999999888809
Q gi|254780268|r 11 GEIALRILRACKELG 25 (443)
Q Consensus 11 Geia~riira~~elG 25 (443)
+-+.-++++-+++-|
T Consensus 23 ~~vg~~i~~nL~~~g 37 (598)
T COG1042 23 GKLGYEILRNLLEYG 37 (598)
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 215799999998568
No 341
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=48.66 E-value=20 Score=16.26 Aligned_cols=13 Identities=8% Similarity=0.194 Sum_probs=6.9
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 8999999987099
Q gi|254780268|r 63 IQQIVAACEVTGA 75 (443)
Q Consensus 63 i~~ii~~a~~~~~ 75 (443)
...|+++..+.|+
T Consensus 37 ~~~vl~~l~~~g~ 49 (368)
T cd06810 37 NPHVLRTLAEAGT 49 (368)
T ss_pred CHHHHHHHHHHCC
T ss_conf 9999999998599
No 342
>PRK06953 short chain dehydrogenase; Provisional
Probab=48.62 E-value=20 Score=16.26 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=28.7
Q ss_pred CEEEEE--ECCCHHHHHHHHHHHHCCCEEEEECCCHHHC
Q ss_conf 706866--4470999999998888096599985855771
Q gi|254780268|r 2 ISKILI--ANRGEIALRILRACKELGIPTVAVHSTADSG 38 (443)
Q Consensus 2 ~~~iLi--anrGeia~riira~~elGi~tv~v~s~~D~~ 38 (443)
||.+|| ++|| |..-+.+.+-+.|.+.++...+++..
T Consensus 1 MK~~LVTGas~G-IG~a~a~~la~~G~~V~~~~R~~~~l 38 (222)
T PRK06953 1 MKTVLIVGASRG-IGLEFVRQYRADGWRVIATARDAAGL 38 (222)
T ss_pred CCEEEECCCCHH-HHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 999999475729-99999999998889999996888889
No 343
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=48.50 E-value=20 Score=16.25 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=8.4
Q ss_pred HHHHHHHHHHCCCCEE
Q ss_conf 8999999987099899
Q gi|254780268|r 63 IQQIVAACEVTGADAI 78 (443)
Q Consensus 63 i~~ii~~a~~~~~dai 78 (443)
.=+.++.||+.|+..|
T Consensus 63 ~i~a~~~ak~~g~~ti 78 (120)
T cd05710 63 TVAAAKFAKEKGATVI 78 (120)
T ss_pred HHHHHHHHHHCCCEEE
T ss_conf 9999999998699599
No 344
>TIGR02025 BchH magnesium chelatase, H subunit; InterPro: IPR011771 This entry represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring .; GO: 0016851 magnesium chelatase activity, 0015995 chlorophyll biosynthetic process.
Probab=48.48 E-value=8.2 Score=19.05 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=7.3
Q ss_pred HHHHHHHHCCCEEEEECC
Q ss_conf 999988880965999858
Q gi|254780268|r 16 RILRACKELGIPTVAVHS 33 (443)
Q Consensus 16 riira~~elGi~tv~v~s 33 (443)
-+||++-..|+.++.+|+
T Consensus 287 ~~ir~LE~~Gl~v~p~f~ 304 (1384)
T TIGR02025 287 NLIRELEAKGLQVVPAFA 304 (1384)
T ss_pred HHHHHHHHCCCEEEEEEE
T ss_conf 999999966992788886
No 345
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012691 This entry represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see IPR012689 from INTERPRO). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the members of this family are found in the operon for 4-hydroxyphenylacetic acid catabolism.; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process, 0005737 cytoplasm.
Probab=48.43 E-value=20 Score=16.24 Aligned_cols=199 Identities=18% Similarity=0.259 Sum_probs=102.7
Q ss_pred CCEEECCC--HHHHHHHHCHHHHHHHHHHC--CCCCCCCCCCCCHHHHH---HHHHCCC-------CHHHHHCCCCCCCC
Q ss_conf 92162689--89998721899887766422--44332433345579998---7320033-------01220002345782
Q gi|254780268|r 99 HIKFIGPS--SEHIKIMGDKITAKKTAQQL--GIPVVPGSGEVYPHTAM---PIAKEIG-------FPVLVKASAGGGGR 164 (443)
Q Consensus 99 Gi~fIGPs--~~ai~~~gDK~~~k~~a~~~--GVP~~p~~~~~~~~ea~---~~a~~iG-------yPviiKp~~gGGG~ 164 (443)
+|..-|++ |.+.-+.+-|...-..++.. -||++||+.....+|-+ .+|++.| -|..+||-
T Consensus 37 ~~SV~GT~GEP~~~T~EER~~~~E~~~~~~~GR~P~~PGTG~~~~~ETl~~T~~A~E~GA~~AMVIVPYY~KPN------ 110 (294)
T TIGR02313 37 AVSVTGTSGEPSSLTLEERKRVIEVVLDTVAGRVPVIPGTGALRLDETLELTKKAKEAGADAAMVIVPYYVKPN------ 110 (294)
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC------
T ss_conf 57605656988654278899999999976168412237887654035788888888506772157744777987------
Q ss_pred EEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE--EECCEEEE----EECCCCCCCC----------------
Q ss_conf 1688875066899999875432125899816884434201--10331577----7347870236----------------
Q gi|254780268|r 165 GMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENP--RHIEVQIF----GDGMGNAIHF---------------- 222 (443)
Q Consensus 165 Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~--rhiEvqVl----~D~~g~~v~l---------------- 222 (443)
.+-|-+.|.... .+.+|=+++|= .|+|- .++|+.-+ .|- -|+|=+
T Consensus 111 -------QE~LY~~F~~VA----~~VPD~P~~IY-NIPGR~~~~~~~KT~~RL~~D~-PNIVG~K~S~KDlE~~~~~lL~ 177 (294)
T TIGR02313 111 -------QEALYDYFKEVA----DAVPDIPLLIY-NIPGRAAVEIEVKTVARLVKDF-PNIVGLKESSKDLEYLSRLLLE 177 (294)
T ss_pred -------HHHHHHHHHHHH----HHCCCCCEEEE-CCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHH
T ss_conf -------567899999997----52389757885-2888543411214555554217-7511155542028899999986
Q ss_pred CCCC----CCCCCC-CCEE-E----EE-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE-EECCCCEEEEECCCCC
Q ss_conf 5665----421135-6225-5----40-34455889999999999999886515434102458-9728834998227654
Q gi|254780268|r 223 GERD----CSVQRR-NQKI-W----EE-AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEF-LYENGQFYFIEMNTRL 290 (443)
Q Consensus 223 ~erd----CSiQrr-~qki-i----Ee-aPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEF-l~~~~~~yflEvN~Rl 290 (443)
..|| |-++-- .+.+ | -+ |-| +..++....|++.+ .+=+|+++--.-| |++-++..|-.-||=
T Consensus 178 ~GRDFL~F~G~E~L~~PMl~~G~~G~I~ATA-N~~PK~VA~l~~~~----~~GD~~~A~~LHF~Ll~~N~~~F~DTNP~- 251 (294)
T TIGR02313 178 AGRDFLLFSGLELLTLPMLALGAVGSIAATA-NVLPKKVALLHEKA----LEGDIKRARDLHFELLELNDVLFKDTNPI- 251 (294)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH-CCCCHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHHHCCCCC-
T ss_conf 1734656631788866788731212355540-57706799999887----51653468899999987546654068993-
Q ss_pred CCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 332016788632562011232221022222113333
Q gi|254780268|r 291 QVEHPVTEAITGIDLVHEQIYVASENRLSVQQKDIT 326 (443)
Q Consensus 291 qveh~vte~~tgvdlv~~~~~~a~g~~l~~~~~~i~ 326 (443)
||-....=.-|++-.+|-=+|-+.+..|+.++
T Consensus 252 ----P~K~~L~~MGl~E~~~R~PlG~~~~~~~E~~R 283 (294)
T TIGR02313 252 ----PLKAVLSMMGLLEKVLRRPLGLTSDELEERLR 283 (294)
T ss_pred ----HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf ----08998755200104535888778767889999
No 346
>PRK13134 consensus
Probab=48.43 E-value=20 Score=16.24 Aligned_cols=104 Identities=15% Similarity=0.200 Sum_probs=48.2
Q ss_pred HHHHHHHHHCCCE-EECCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHH-CCCCHHHHHCCCCCCC
Q ss_conf 7666889845921-62689--899987218998877664224433243334557999-87320-0330122000234578
Q gi|254780268|r 89 AKFAEILEDHHIK-FIGPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTA-MPIAK-EIGFPVLVKASAGGGG 163 (443)
Q Consensus 89 ~~fa~~~e~~Gi~-fIGPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea-~~~a~-~iGyPviiKp~~gGGG 163 (443)
.+|++.|.++|+. +|=|. .+ .....+..+++.|+..++.....+.++. ...++ .-||=.++=-. |-
T Consensus 113 e~F~~~~~~aGvdGvIipDLP~e------E~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~s~gFIY~vs~~---Gv 183 (257)
T PRK13134 113 ERFVRDAADAGVAGCIIPDLPLD------EDADLRALLAARGMDLIALVGPNTGEGRMREYAAVASGYVYVVSVM---GT 183 (257)
T ss_pred HHHHHHHHHCCCCEEEECCCCHH------HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEECC---CC
T ss_conf 99999998679875994699977------8899999999759826996389999999999996288808998435---56
Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEC
Q ss_conf 21688875066899999875432125899816884434201103
Q gi|254780268|r 164 RGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHI 207 (443)
Q Consensus 164 ~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhi 207 (443)
-|.+- ..+.++.+.+++.++.. +-++.+-==|..+.|+
T Consensus 184 TG~~~-~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~v 221 (257)
T PRK13134 184 TGVRD-GLPVEVADTLARARQCF-----SIPVALGFGISRPAQL 221 (257)
T ss_pred CCCCC-CCHHHHHHHHHHHHHHC-----CCCEEEECCCCCHHHH
T ss_conf 68764-55288999999999706-----9987998067999999
No 347
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=48.32 E-value=20 Score=16.23 Aligned_cols=145 Identities=19% Similarity=0.141 Sum_probs=60.6
Q ss_pred ECCCHHHHHHHHHHHHCCCEEEEEC----CCHHHCCC----CHHHCCE--EEECCCCCCCCHHCCHHHHHHHHHHC---C
Q ss_conf 4470999999998888096599985----85577187----7675857--99918998530006989999999870---9
Q gi|254780268|r 8 ANRGEIALRILRACKELGIPTVAVH----STADSGAM----HVRLADE--SVCIGPPSSKDSYLNIQQIVAACEVT---G 74 (443)
Q Consensus 8 anrGeia~riira~~elGi~tv~v~----s~~D~~a~----~~~~ADe--~~~i~~~~~~~sYldi~~ii~~a~~~---~ 74 (443)
|+.-+=|..|+.++. |.-.+.|- ++.+.--. +-+..|- ++-||.+.+..++ .+.++|++. .
T Consensus 11 A~d~~NAkei~eAae--G~v~vGvlskny~tveeav~~mk~y~~~~~~avSVGLGaGDp~Q~~----~Va~Ia~~~~P~H 84 (236)
T TIGR03581 11 ANSIENAKEIYEAAE--GHVLIGVLSKNYPTVEEAIEDMKKYQKEIDNAVSVGLGAGDPNQSA----MVADISAHTQPQH 84 (236)
T ss_pred CCCHHHHHHHHHHHC--CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHH----HHHHHHHHCCCCC
T ss_conf 287541999998745--8679888607788689999999999974788568842799979999----9999998749765
Q ss_pred CCEEECCCCHHH----CCHHHHHH----HHHCCCEEE--CCCHH-HHHHHHCHHHHHHHHHHCCCCCCCCCC---CCCHH
Q ss_conf 989945853131----09766688----984592162--68989-998721899887766422443324333---45579
Q gi|254780268|r 75 ADAIHPGYGFLS----ENAKFAEI----LEDHHIKFI--GPSSE-HIKIMGDKITAKKTAQQLGIPVVPGSG---EVYPH 140 (443)
Q Consensus 75 ~daihPGyGfLs----En~~fa~~----~e~~Gi~fI--GPs~~-ai~~~gDK~~~k~~a~~~GVP~~p~~~---~~~~~ 140 (443)
+.-++||-||-- .+-.+... --+-|...| ||.+. .-+..-+=..+-.+++..|.+.+.++. ....+
T Consensus 85 VNQvFt~ag~sr~~L~~~~T~vN~LvsPTG~~G~VkIsTGp~Ss~~~~~~V~vetAiaml~dmG~~SiKffPm~Gl~~le 164 (236)
T TIGR03581 85 INQVFTGVGTSRALLGQADTVINGLVSPTGTPGLVNISTGPLSSQGKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLE 164 (236)
T ss_pred CCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEHHHHHHHHHHCCCCEEEEEECCCCCCHH
T ss_conf 46415404777887379870898877588975169945676655688855139999999997398826675067734199
Q ss_pred HHH---HHHHCCCCHHHHHCCCC
Q ss_conf 998---73200330122000234
Q gi|254780268|r 141 TAM---PIAKEIGFPVLVKASAG 160 (443)
Q Consensus 141 ea~---~~a~~iGyPviiKp~~g 160 (443)
|.. +++.+.|| .+-|..|
T Consensus 165 E~~avA~aca~~g~--~lEPTGG 185 (236)
T TIGR03581 165 EYAAVAKACAKHGF--YLEPTGG 185 (236)
T ss_pred HHHHHHHHHHHCCE--EECCCCC
T ss_conf 99999999997691--5666798
No 348
>PRK05282 peptidase E; Validated
Probab=48.16 E-value=21 Score=16.21 Aligned_cols=73 Identities=19% Similarity=0.201 Sum_probs=31.7
Q ss_pred HHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHH
Q ss_conf 99998888096599985855771877675857999189985300069899999998709989945853131097666889
Q gi|254780268|r 16 RILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEIL 95 (443)
Q Consensus 16 riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~ 95 (443)
++-++...+|++.+.++...|.. ..++.|| +++++++. -=.+++..++.+.+. .-+..
T Consensus 52 ~v~~af~~lg~~v~gih~~~dp~-~AI~~Ad-~I~vgGGN-------TF~Ll~~L~~~gl~~-------------~ir~~ 109 (233)
T PRK05282 52 KVAEVLAPLGIEVTGIHRVEDPV-AAIENAD-GIIVGGGN-------TFQLLKQLYERGLLA-------------PIREA 109 (233)
T ss_pred HHHHHHHHCCCEEEEEECCCCHH-HHHHHCC-EEEECCCC-------HHHHHHHHHHCCCHH-------------HHHHH
T ss_conf 99999986698288762458989-9997499-79986973-------999999999858299-------------99999
Q ss_pred HHCCCEEECCCHHHH
Q ss_conf 845921626898999
Q gi|254780268|r 96 EDHHIKFIGPSSEHI 110 (443)
Q Consensus 96 e~~Gi~fIGPs~~ai 110 (443)
.+.|.+++|-|+-+.
T Consensus 110 V~~G~pYiG~SAGsn 124 (233)
T PRK05282 110 VKNGTPYIGWSAGAN 124 (233)
T ss_pred HHCCCCEEEECCHHH
T ss_conf 984997796264154
No 349
>PRK13120 consensus
Probab=48.13 E-value=21 Score=16.21 Aligned_cols=221 Identities=12% Similarity=0.134 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC---CCC--EEECCCC
Q ss_conf 99999999888809659998---585577187767585799918998530006989999999870---998--9945853
Q gi|254780268|r 12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT---GAD--AIHPGYG 83 (443)
Q Consensus 12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~---~~d--aihPGyG 83 (443)
+...++++++-+.|...+=+ ||||=..-+-.+.|.+-- |. .=.+.+.+++..++. ..+ -|+=||-
T Consensus 35 ~~t~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rA-L~------~G~~l~~vl~~v~~~r~~~~~~PivlM~Y~ 107 (285)
T PRK13120 35 QATVPLMHALVRAGADLVELGVPFSDPMADGPVVQRAAERA-IA------QGVGLRRVLELVADFRRDDSVTPVVLMGYA 107 (285)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHHHHCCCCCCEEEEEHH
T ss_conf 99999999999769999997898787456689999999999-97------699844699999998734898888986105
Q ss_pred --HHHC-CHHHHHHHHHCCCE-EECC--CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHH-HHHHHHC-CCCHHHH
Q ss_conf --1310-97666889845921-6268--989998721899887766422443324333455799-9873200-3301220
Q gi|254780268|r 84 --FLSE-NAKFAEILEDHHIK-FIGP--SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHT-AMPIAKE-IGFPVLV 155 (443)
Q Consensus 84 --fLsE-n~~fa~~~e~~Gi~-fIGP--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~e-a~~~a~~-iGyPvii 155 (443)
+++= ...|++.|.++|+. +|=| +++ .-..++..+++.|+..++.....+.++ +..+++. =||=..|
T Consensus 108 Npi~~yG~e~F~~~~~~aGvdGlIIpDLP~E------E~~~~~~~~~~~gi~~I~LiaPtT~~eRi~~I~~~s~GFvY~V 181 (285)
T PRK13120 108 NPIERMGQRAFAQAAQAAGVDGVLVVDYPPE------EVDEFAAMLAEAGVAPIFLLAPTSTEARIEAIGRVARGYVYYV 181 (285)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCCHH------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 4999987999999999839877964799979------9999999999669965899579998999999995089818998
Q ss_pred HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC-EEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 00234578216888750668999998754321258998168844342011033-15777347870236566542113562
Q gi|254780268|r 156 KASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE-VQIFGDGMGNAIHFGERDCSVQRRNQ 234 (443)
Q Consensus 156 Kp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE-vqVl~D~~g~~v~l~erdCSiQrr~q 234 (443)
--...-|.+ -...+++.+.++..++.. +-+|.+-==|..+.|+. +.=.+|| +.+|-. + -
T Consensus 182 S~~GVTG~~----~~~~~~l~~~i~~ik~~t-----~~Pv~vGFGIs~~e~v~~~~~~ADG----vIVGSA---i----V 241 (285)
T PRK13120 182 SLKGVTGAG----SLDTDDVARKLALIRRHV-----HIPVGVGFGIRDAASAQRIAAHADA----VVIGSK---L----I 241 (285)
T ss_pred ECCCCCCCC----CCCHHHHHHHHHHHHHCC-----CCCEEEEECCCCHHHHHHHHCCCCE----EEECHH---H----H
T ss_conf 656546887----556688999999999726-----9975999625989999999702999----998789---9----9
Q ss_pred EEEEECCCC----CCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 255403445----5889999999999999886515
Q gi|254780268|r 235 KIWEEAHSP----VISAQDRTEIGETCVKAMKKID 265 (443)
Q Consensus 235 kiiEeaPap----~l~~~~~~~i~~~A~~~~~~~g 265 (443)
|+|||+.++ .-.+....++.+....+-.+++
T Consensus 242 k~Iee~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d 276 (285)
T PRK13120 242 ETMEQAGAQAGADQKNEAAIAAAQQWLHTIRLALD 276 (285)
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99997075456555688999999999999999987
No 350
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=48.04 E-value=21 Score=16.20 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=23.8
Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 21688875066899999875432125899816884
Q gi|254780268|r 164 RGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 164 ~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
|....+.+.+++.+.+++|.+.+.+. ..++|+++
T Consensus 119 k~~~~i~~~~~~~~~i~~A~~~a~s~-~~gPv~l~ 152 (155)
T cd07035 119 KWAYRVTSPEEIPEALRRAFRIALSG-RPGPVALD 152 (155)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHCCC-CCCCEEEE
T ss_conf 32578899999999999999997459-89458998
No 351
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=47.95 E-value=21 Score=16.19 Aligned_cols=174 Identities=20% Similarity=0.271 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC-----CCCEEECCCC
Q ss_conf 99999999888809659998---585577187767585799918998530006989999999870-----9989945853
Q gi|254780268|r 12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT-----GADAIHPGYG 83 (443)
Q Consensus 12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~-----~~daihPGyG 83 (443)
|.-.++++++-+.|...+=+ +|||=..-+-.+.|.+.- |.. =.+.+.+++..++. ..--|.=||-
T Consensus 23 ~~~~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~~A-L~~------G~~~~~~~~~~~~~r~~~~~~pivlM~Y~ 95 (258)
T pfam00290 23 ETTLEILEALEEAGADAIELGIPFSDPLADGPTIQRANLRA-LAG------GMTLDQTLELVEEIRNKGTSVPIVLMTYY 95 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HHC------CCCHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 99999999999769999997899888766589999999999-986------99699999999985512899888998520
Q ss_pred --HHHCC-HHHHHHHHHCCCE-EECC--CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHH-HHHHHH-CCCCHHHH
Q ss_conf --13109-7666889845921-6268--989998721899887766422443324333455799-987320-03301220
Q gi|254780268|r 84 --FLSEN-AKFAEILEDHHIK-FIGP--SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHT-AMPIAK-EIGFPVLV 155 (443)
Q Consensus 84 --fLsEn-~~fa~~~e~~Gi~-fIGP--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~e-a~~~a~-~iGyPvii 155 (443)
++.-. ..|.+.|.++|+. +|=| +.+ .-...++.++++|+..++.....+.++ ....++ .-||=..+
T Consensus 96 N~i~~~G~e~F~~~~~~~GvdGvIipDLP~e------E~~~~~~~~~~~~l~~I~lvsPtt~~~Ri~~i~~~s~gFiY~v 169 (258)
T pfam00290 96 NPVLNYGIERFYAQAAEAGVDGLIIPDLPPE------EADPLREAAEKHGIDLIFLVAPTTSDERLKTISEAASGFVYLV 169 (258)
T ss_pred HHHHHCCHHHHHHHHHHCCCCEEECCCCCHH------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 8898729999999999759977870799988------9999999998458435888458881999999996089808998
Q ss_pred HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEC
Q ss_conf 0023457821688875066899999875432125899816884434201103
Q gi|254780268|r 156 KASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHI 207 (443)
Q Consensus 156 Kp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhi 207 (443)
= ..| --|.+ -...+++.+.+...++.. +-+|++-==|..+.|+
T Consensus 170 s-~~G--vTG~~-~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~v 212 (258)
T pfam00290 170 S-RAG--VTGAR-NAFNAQLDELVERLKKYT-----NVPVAVGFGISTPEHV 212 (258)
T ss_pred E-CCC--CCCCC-CCCCHHHHHHHHHHHHCC-----CCCEEEEECCCCHHHH
T ss_conf 5-344--56765-556388999999998606-----9984899457999999
No 352
>PRK10637 cysG siroheme synthase; Provisional
Probab=47.75 E-value=21 Score=16.17 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=27.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 06866447099999999888809659998585
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAVHST 34 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v~s~ 34 (443)
|++||++-|++|.|=++.+-+-|-+..++-.+
T Consensus 13 k~vLVVGGG~vA~rK~~~Ll~agA~VtViap~ 44 (457)
T PRK10637 13 RDCLIVGGGDVAERKARLLLDAGARLTVNALA 44 (457)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 86999899899999999998789879998998
No 353
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=47.67 E-value=20 Score=16.35 Aligned_cols=77 Identities=22% Similarity=0.389 Sum_probs=42.1
Q ss_pred CEE--EEEECCCHHHHHHHHHHHH--CCCEEEEECCC-HHHCCCCHHHCC----EEEECCCCC--CCCHHCCHHHHHHHH
Q ss_conf 706--8664470999999998888--09659998585-577187767585----799918998--530006989999999
Q gi|254780268|r 2 ISK--ILIANRGEIALRILRACKE--LGIPTVAVHST-ADSGAMHVRLAD----ESVCIGPPS--SKDSYLNIQQIVAAC 70 (443)
Q Consensus 2 ~~~--iLianrGeia~riira~~e--lGi~tv~v~s~-~D~~a~~~~~AD----e~~~i~~~~--~~~sYldi~~ii~~a 70 (443)
||| ||+-++|--.-.+++++++ +.++.+.|.|| +|.... ..|. ....+.... ..++| -+.|++..
T Consensus 1 Mkkiavl~SG~GSNl~aii~a~~~~~l~~~i~~Visn~~~a~~l--~~A~~~~Ip~~~i~~~~~~~r~~~--d~~i~~~L 76 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDACAAGQLPAEVVAVISDRPDAYGL--ERAEQAGIPTFVLDHKDFPSREAF--DAALVEAL 76 (200)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHH--HHHHHCCCCEEEECCCCCCCHHHH--HHHHHHHH
T ss_conf 97899999158044999999987599994899999789753665--999975997699677667998999--99999999
Q ss_pred HHCCCCEEE-CCC
Q ss_conf 870998994-585
Q gi|254780268|r 71 EVTGADAIH-PGY 82 (443)
Q Consensus 71 ~~~~~daih-PGy 82 (443)
++.++|.|. -||
T Consensus 77 ~~~~vDlIvLAGy 89 (200)
T PRK05647 77 DAYEPDLVVLAGF 89 (200)
T ss_pred HHCCCCEEEECCH
T ss_conf 8649999999881
No 354
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=47.64 E-value=21 Score=16.16 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=19.7
Q ss_pred EEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 688875066899999875432125899816884
Q gi|254780268|r 166 MRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 166 i~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
...+.+++++...+++|.+.+.+. .-++|+++
T Consensus 125 ~~~v~~~~~i~~~l~~A~~~A~~g-~~GPV~l~ 156 (548)
T PRK08978 125 SFLVQSLEELPRIMAEAFEIASSG-RPGPVLVD 156 (548)
T ss_pred EEEECCHHHHHHHHHHHHHHHHCC-CCCCEEEE
T ss_conf 678489999899999999998538-99756986
No 355
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=47.60 E-value=21 Score=16.15 Aligned_cols=12 Identities=17% Similarity=0.465 Sum_probs=6.8
Q ss_pred HHHHHHHCCCEE
Q ss_conf 999888809659
Q gi|254780268|r 17 ILRACKELGIPT 28 (443)
Q Consensus 17 iira~~elGi~t 28 (443)
|+|-||.||++.
T Consensus 51 VvRf~kkLGf~G 62 (282)
T PRK11557 51 VVKFAQKLGYKG 62 (282)
T ss_pred HHHHHHHHCCCC
T ss_conf 999999938998
No 356
>PRK07102 short chain dehydrogenase; Provisional
Probab=47.52 E-value=21 Score=16.14 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=29.2
Q ss_pred CEEEEE--ECCCHHHHHHHHHHHHCCCEEEEECCCHHHC
Q ss_conf 706866--4470999999998888096599985855771
Q gi|254780268|r 2 ISKILI--ANRGEIALRILRACKELGIPTVAVHSTADSG 38 (443)
Q Consensus 2 ~~~iLi--anrGeia~riira~~elGi~tv~v~s~~D~~ 38 (443)
||+||| |.+| |..-+.+.+-+.|.+.+++.-+.+..
T Consensus 1 MK~vlITGassG-IG~a~A~~la~~G~~v~l~~R~~~~l 38 (243)
T PRK07102 1 MKKILIIGATSD-IARACARRYAAAGARLYLAARDTERL 38 (243)
T ss_pred CCEEEEECCCHH-HHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 997999157459-99999999998799899998988999
No 357
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=47.38 E-value=21 Score=16.13 Aligned_cols=71 Identities=20% Similarity=0.339 Sum_probs=38.3
Q ss_pred HHHHHHHHHCCCCEEECCCCHHHCC--HHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 9999999870998994585313109--76668898459216268989998721899887766422443324333455799
Q gi|254780268|r 64 QQIVAACEVTGADAIHPGYGFLSEN--AKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHT 141 (443)
Q Consensus 64 ~~ii~~a~~~~~daihPGyGfLsEn--~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~e 141 (443)
+.+..-+++.+++-+|.|. +| ..+.+.|++.|+. ++-+.-+||=+.=-.+++++|++..|.- ...+
T Consensus 79 ~~v~~Ra~~Lgi~~~~~g~----~dK~~~l~~l~~~~gl~-----~eevayiGDDi~Dl~~m~~vGls~~P~D---A~~~ 146 (186)
T PRK09484 79 KIVEDRMTTLGITHIYQGQ----SNKLIAYSDLLEKLAIA-----PEQVAYIGDDLIDWPVMEKVGLSVAVAD---AHPL 146 (186)
T ss_pred HHHHHHHHHHCCCEEEECH----HHHHHHHHHHHHHHCCC-----HHHEEEECCCCCHHHHHHHCCCCCCCCC---CCHH
T ss_conf 8999999961898899370----76999999999980989-----9991520687226999987695216664---0799
Q ss_pred HHHHH
Q ss_conf 98732
Q gi|254780268|r 142 AMPIA 146 (443)
Q Consensus 142 a~~~a 146 (443)
+++.+
T Consensus 147 Vk~~a 151 (186)
T PRK09484 147 LIPRA 151 (186)
T ss_pred HHHHC
T ss_conf 99868
No 358
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=47.21 E-value=21 Score=16.11 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=26.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 06866447099999999888809659998
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAV 31 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v 31 (443)
|++||.+-|++|.|=++++.+-|-...+|
T Consensus 14 k~vLVvGGG~VA~rK~~~Ll~~ga~VtVv 42 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 87999889899999999998787969999
No 359
>PRK02769 histidine decarboxylase; Provisional
Probab=47.10 E-value=14 Score=17.43 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHC-CCCHHHHHCCCCCCCCEEEEEEECHHHHHHHH
Q ss_conf 4433243334557999873200-33012200023457821688875066899999
Q gi|254780268|r 127 GIPVVPGSGEVYPHTAMPIAKE-IGFPVLVKASAGGGGRGMRIAYSENDLSEAID 180 (443)
Q Consensus 127 GVP~~p~~~~~~~~ea~~~a~~-iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~ 180 (443)
.||+-+. ...+.+++.+..++ -..|++|=+..|---+|. +.+-+++.+..+
T Consensus 136 ~V~~~~~-G~md~~~L~~~i~~~~~~P~iv~at~GTT~~Ga--iD~i~~i~~i~~ 187 (380)
T PRK02769 136 VITSLPN-GEIDYDDLISKIKENKNQPPIIFANIGTTMTGA--IDNIKEIQEILK 187 (380)
T ss_pred EECCCCC-CCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCC--CCCHHHHHHHHH
T ss_conf 7367999-949799999999967998779999647988867--189999999999
No 360
>TIGR02483 PFK_mixed phosphofructokinase; InterPro: IPR012829 Members of this family that are characterised, save one, are phosphofructokinases dependent on pyrophosphate (2.7.1.90 from EC) rather than ATP (2.7.1.11 from EC). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.; GO: 0005524 ATP binding, 0008443 phosphofructokinase activity, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=46.95 E-value=21 Score=16.12 Aligned_cols=91 Identities=23% Similarity=0.288 Sum_probs=58.7
Q ss_pred HHHHHHHCCCEEEEEC-------CCHHHCC-CCHHHCCEEEECCC-------CCCCCHHC--CH----------HHHHHH
Q ss_conf 9998888096599985-------8557718-77675857999189-------98530006--98----------999999
Q gi|254780268|r 17 ILRACKELGIPTVAVH-------STADSGA-MHVRLADESVCIGP-------PSSKDSYL--NI----------QQIVAA 69 (443)
Q Consensus 17 iira~~elGi~tv~v~-------s~~D~~a-~~~~~ADe~~~i~~-------~~~~~sYl--di----------~~ii~~ 69 (443)
+-|++.+.|++.|.++ .++|... .+...=+.-+..|+ ..++-+|. +. |++.+-
T Consensus 22 V~~a~~~~G~EV~G~~~Gw~GLL~n~~~~~lL~~~~v~gIL~~GGTILGsSNr~NPF~~~~~~~~G~~v~~DvSd~~~~n 101 (339)
T TIGR02483 22 VRRAIAEYGWEVIGIRDGWRGLLENGDIVPLLDLEDVRGILPRGGTILGSSNRTNPFKYEEDGEDGKTVVRDVSDKIVAN 101 (339)
T ss_pred HHHHHEECCCEEEEEECCCHHHHCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCHHHHHH
T ss_conf 55331012866888700000011166603547810168798519908725777787420010579827997320899998
Q ss_pred HHHCCCCEEEC--CCCHHHCCHHHHHHHHHCC-CEEECCCHHHHHH
Q ss_conf 98709989945--8531310976668898459-2162689899987
Q gi|254780268|r 70 CEVTGADAIHP--GYGFLSENAKFAEILEDHH-IKFIGPSSEHIKI 112 (443)
Q Consensus 70 a~~~~~daihP--GyGfLsEn~~fa~~~e~~G-i~fIGPs~~ai~~ 112 (443)
.++.|.||+-| |=|=| .-|+.+.+.| |+.|| -|++|+.
T Consensus 102 ~~~~GlDAlIaIGGdGTL----~~A~~l~~~GGl~vVG-VPKTIDN 142 (339)
T TIGR02483 102 LKELGLDALIAIGGDGTL----GIARRLADKGGLPVVG-VPKTIDN 142 (339)
T ss_pred HHHCCCEEEEEECCCCHH----HHHHHHHHCCCCCEEE-ECCCCCC
T ss_conf 996498189986687268----9999999658985474-1577546
No 361
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=46.88 E-value=21 Score=16.08 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=29.8
Q ss_pred CCEEEEEECCCHHHH----HHHHHHHHCCCEEEEECCCHH
Q ss_conf 970686644709999----999988880965999858557
Q gi|254780268|r 1 MISKILIANRGEIAL----RILRACKELGIPTVAVHSTAD 36 (443)
Q Consensus 1 m~~~iLianrGeia~----riira~~elGi~tv~v~s~~D 36 (443)
|-||||+.=-|-||. .++|.+++.|.+.-++-|+..
T Consensus 1 m~K~IllgvtGsIAayK~~~lir~L~k~g~~V~vi~T~~A 40 (180)
T PRK07313 1 MTKKILLAVSGSIAAYKAADLTSQLTKIGYDVTVIMTKAA 40 (180)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 9976999995499999999999999988995999977469
No 362
>PRK13123 consensus
Probab=46.72 E-value=22 Score=16.06 Aligned_cols=171 Identities=20% Similarity=0.239 Sum_probs=87.1
Q ss_pred HHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCC--EEECCCC--HHH
Q ss_conf 999999888809659998---585577187767585799918998530006989999999870998--9945853--131
Q gi|254780268|r 14 ALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGAD--AIHPGYG--FLS 86 (443)
Q Consensus 14 a~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~d--aihPGyG--fLs 86 (443)
-.++++++-+-|...+=+ +|||=..-+-.+.|.+-. |. .=.+.+.+++..++.+.+ -|.=||- ++.
T Consensus 31 ~~~~i~~l~~~GaDiiElGiPFSDPvADGPvIq~A~~rA-L~------~G~~~~~~~~~~~~~~~~~PivlMtY~N~i~~ 103 (256)
T PRK13123 31 LKETIRFLEEAGVSAIEIGIPFSDPVADGPVIQLAGLRA-LA------SGVSLKAILQALIEKETQIPLVIMTYINPVFQ 103 (256)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHH
T ss_conf 999999999769999997899888666579999989999-86------79969999988763057998897404258987
Q ss_pred CC-HHHHHHHHHCCCE-EECCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHH-CCCCH--HHHHCC
Q ss_conf 09-7666889845921-62689--899987218998877664224433243334557999-87320-03301--220002
Q gi|254780268|r 87 EN-AKFAEILEDHHIK-FIGPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTA-MPIAK-EIGFP--VLVKAS 158 (443)
Q Consensus 87 En-~~fa~~~e~~Gi~-fIGPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea-~~~a~-~iGyP--viiKp~ 158 (443)
-. ..|.+.|.++|+. +|=|. .+ ....++..+++.|+..++.....++++. ...++ .-||= +-++.+
T Consensus 104 yG~e~F~~~~~~~GvdGvIipDLP~e------E~~~~~~~~~~~gi~~I~liaPtt~~~Ri~~i~~~a~GFiY~Vs~~Gv 177 (256)
T PRK13123 104 YGIERFVEDLAETGVKGLIIPDLPYE------HQDFIAPLLRDTDIALIPLVSLTSPIERQKEIIKEAEGFIYAVAVNGV 177 (256)
T ss_pred CCHHHHHHHHHHCCCCEEECCCCCHH------HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 18999999999749978973799967------899999999976997786408999388999998607884899744556
Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC
Q ss_conf 34578216888750668999998754321258998168844342011033
Q gi|254780268|r 159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE 208 (443)
Q Consensus 159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE 208 (443)
- |.+ -...+++.+.+++.++.. +-++.+-==|..+.|+.
T Consensus 178 T-----G~~-~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~v~ 216 (256)
T PRK13123 178 T-----GKR-GNYRDDLDSHLEKLKSIA-----HIPVLAGFGISTLEDVE 216 (256)
T ss_pred C-----CCC-CCCHHHHHHHHHHHHHCC-----CCCEEEECCCCCHHHHH
T ss_conf 6-----765-333388999999998568-----99879976889999999
No 363
>TIGR00033 aroC chorismate synthase; InterPro: IPR000453 Chorismate synthase (4.2.3.5 from EC) catalyzes the last of the seven steps in the shikimate pathway which is used in prokaryotes, fungi and plants for the biosynthesis of aromatic amino acids. It catalyzes the 1,4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine, tyrosine or tryptophan biosynthesis. Chorismate synthase requires the presence of a reduced flavin mononucleotide (FMNH2 or FADH2) for its activity. Chorismate synthase from various sources shows , a high degree of sequence conservation. It is a protein of about 360 to 400 amino-acid residues.; GO: 0004107 chorismate synthase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=46.65 E-value=13 Score=17.55 Aligned_cols=64 Identities=27% Similarity=0.311 Sum_probs=51.4
Q ss_pred CCCCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-----C--CEEEEECCCCCC
Q ss_conf 42113562--25540344558899999999999998865154341024589728-----8--349982276543
Q gi|254780268|r 227 CSVQRRNQ--KIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYEN-----G--QFYFIEMNTRLQ 291 (443)
Q Consensus 227 CSiQrr~q--kiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~-----~--~~yflEvN~Rlq 291 (443)
.|-|+.++ .+||..|....+++..++|.++-.++-+.-+=.| |-|++++.+ | +++|--++.+|=
T Consensus 190 ~~~e~~~~lieiie~~p~r~~d~~~~~~m~~~i~~~~~~~Ds~G-Gvv~~~~~~vPvGlGSyep~F~KLdA~LA 262 (391)
T TIGR00033 190 ISKERLDSLIEIIEISPVRCPDPEAEKEMEEEIDKAKKDGDSIG-GVVEVVASNVPVGLGSYEPLFDKLDAELA 262 (391)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC-EEEEEEECCCCCCCCCCCCCCCCHHHHHH
T ss_conf 42889998877661584126780068999999999965268115-08999963678420330012664558888
No 364
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=46.47 E-value=22 Score=16.04 Aligned_cols=175 Identities=12% Similarity=0.108 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHH-CCCCEEECCCC--HH
Q ss_conf 99999999888809659998---58557718776758579991899853000698999999987-09989945853--13
Q gi|254780268|r 12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEV-TGADAIHPGYG--FL 85 (443)
Q Consensus 12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~-~~~daihPGyG--fL 85 (443)
|--.++++++.+. ...+=+ +|||=..-+-.+.|.+.. +. +=.+...+++..++ .+.--|.=||= |+
T Consensus 19 e~s~~~l~~l~~~-aDiiElGiPfSDPvADGpvIq~A~~~A-l~------~g~~~~~i~~~~r~~~~~pivlM~Y~N~~~ 90 (247)
T PRK13125 19 ETFLEAIDGLVGL-VDFLELGIPPKNPKYDGPVIRKAHREV-SY------WGLDYWSLLEEVRKKVGVPTYIMTYLEDYV 90 (247)
T ss_pred HHHHHHHHHHHHC-CCEEEECCCCCCCCCCHHHHHHHHHHH-HH------CCCCHHHHHHHHCCCCCCCEEEHHHHHHHH
T ss_conf 9999999998647-999997998898766609999999999-87------699899999985056899889729889999
Q ss_pred HCCHHHHHHHHHCCCE-EECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHHC-CCCH-HHHHCCCCC
Q ss_conf 1097666889845921-62689899987218998877664224433243334557999-873200-3301-220002345
Q gi|254780268|r 86 SENAKFAEILEDHHIK-FIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTA-MPIAKE-IGFP-VLVKASAGG 161 (443)
Q Consensus 86 sEn~~fa~~~e~~Gi~-fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea-~~~a~~-iGyP-viiKp~~gG 161 (443)
.--.+|.+.|.++|+. +|=|.-- ++.-++.......++++|+..++.....+.++. ...++. -||= +.+++
T Consensus 91 ~g~e~F~~~~~~~GvdGvIipDLP-~e~~ee~~~~~~~~~~~gl~~I~lvsPtt~~~ri~~i~~~s~gFvY~~~~g---- 165 (247)
T PRK13125 91 GSLDDLLNTAKEVGARGVLFPDLL-IDFPDELEKYVELIRRYGLAPVFFTSPKFPDRLIRRLSKLSPLFIYLGLYP---- 165 (247)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC-CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEEC----
T ss_conf 769999999998599758833888-754678999999999769846999579981999999998689779999443----
Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEC
Q ss_conf 7821688875066899999875432125899816884434201103
Q gi|254780268|r 162 GGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHI 207 (443)
Q Consensus 162 GG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhi 207 (443)
.-|.+ .+..+.+.+++.+... .+-+|.+===|..+.|+
T Consensus 166 -vTG~~---~~~~~~~~i~~ik~~~----~~~Pv~vGFGI~t~e~v 203 (247)
T PRK13125 166 -ATGVE---LPVYVERNIKRVRELV----GDVYLVAGFAIDSPEDA 203 (247)
T ss_pred -CCCCC---CCCCHHHHHHHHHHHC----CCCCEEEECCCCCHHHH
T ss_conf -67887---7325999999999856----99985883287999999
No 365
>PRK06847 hypothetical protein; Provisional
Probab=46.42 E-value=22 Score=16.03 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=28.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 706866447099999999888809659998585
Q gi|254780268|r 2 ISKILIANRGEIALRILRACKELGIPTVAVHST 34 (443)
Q Consensus 2 ~~~iLianrGeia~riira~~elGi~tv~v~s~ 34 (443)
+|||+|++-|...+=..-.+++.|++++++-..
T Consensus 4 ~kkV~IVGaG~aGL~lA~~L~~~Gi~v~V~E~~ 36 (375)
T PRK06847 4 VKKVLIVGGGIGGMSAAIALRKAGISVDLVEID 36 (375)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 987999996689999999999679999999089
No 366
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=46.41 E-value=22 Score=16.03 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=40.3
Q ss_pred EEEEEECCC---HHHHHHHHHHHHCCCEEEEECCC--HHHCC---CCHHHCCEEEECCCCCCCCHH----CCHHHHHHHH
Q ss_conf 068664470---99999999888809659998585--57718---776758579991899853000----6989999999
Q gi|254780268|r 3 SKILIANRG---EIALRILRACKELGIPTVAVHST--ADSGA---MHVRLADESVCIGPPSSKDSY----LNIQQIVAAC 70 (443)
Q Consensus 3 ~~iLianrG---eia~riira~~elGi~tv~v~s~--~D~~a---~~~~~ADe~~~i~~~~~~~sY----ldi~~ii~~a 70 (443)
.++|++.-| ....-+.|++++.|.++++|+.- .|..- .....+|+.+.- +...|| +=.+.|-++.
T Consensus 99 g~vv~VgGGvG~Ap~~piakalk~~Gn~v~~I~Gar~k~~vilede~~~~~d~~~it---TDDGS~G~kG~VT~~L~~ll 175 (760)
T PRK12778 99 GTVVCAGGGVGVAPMLPIVQALKAAGNRVITVLAGRSKELIILEKEMRESSDEVIIM---TDDGSYGRKGLVTEGVEEVI 175 (760)
T ss_pred CEEEEEECCEEHHHHHHHHHHHHHCCCEEEEEEECCCHHHEEHHHHHHHHCCEEEEE---CCCCCCCCCCEECHHHHHHH
T ss_conf 739999586968987999999998699599998426633403599999743869998---58999972745667799997
Q ss_pred HHCCCCEEE
Q ss_conf 870998994
Q gi|254780268|r 71 EVTGADAIH 79 (443)
Q Consensus 71 ~~~~~daih 79 (443)
++.++|.|+
T Consensus 176 ~~~~~D~v~ 184 (760)
T PRK12778 176 KREKVNKCF 184 (760)
T ss_pred HCCCCCEEE
T ss_conf 488987899
No 367
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=46.38 E-value=22 Score=16.03 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=47.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf 06866447099999999888809659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY 82 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy 82 (443)
|||.|++.|+-.+-...-++.+|++ |.||-..+.. -.+. .|-||.-.-+... ++.=|+..++.|+.- +.|.
T Consensus 194 KkVAIIGaGPAGLsaAy~L~~~Gh~-VTVfE~~~~~---GGml--ryGIP~yRLPk~v--ld~EI~~i~~~GV~~-~~n~ 264 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKGHD-VTIFDANEQA---GGMM--RYGIPRFRLPESV--IDADIAPLRAMGAEF-RFNT 264 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCE-EEEEECCCCC---CCEE--EECCCCCCCCHHH--HHHHHHHHHHCCCEE-EEEE
T ss_conf 9799968378999999999977990-6998158888---9867--6448633389999--999999999719858-8667
Q ss_pred CHHHCCHHHHHHHHHCCCEEECC
Q ss_conf 31310976668898459216268
Q gi|254780268|r 83 GFLSENAKFAEILEDHHIKFIGP 105 (443)
Q Consensus 83 GfLsEn~~fa~~~e~~Gi~fIGP 105 (443)
- +..+..|.+..++..-.|||.
T Consensus 265 ~-vG~ditl~~L~~~yDAVflai 286 (652)
T PRK12814 265 V-FGRDITLEELQKEFDAVLLAV 286 (652)
T ss_pred E-ECCCCCHHHHHHHCCEEEEEE
T ss_conf 9-477477999986589999975
No 368
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=46.22 E-value=22 Score=16.01 Aligned_cols=117 Identities=14% Similarity=0.216 Sum_probs=58.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCC---CHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCE-EE
Q ss_conf 6866447099999999888809659998585577187---7675857999189985300069899999998709989-94
Q gi|254780268|r 4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAM---HVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADA-IH 79 (443)
Q Consensus 4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~---~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~da-ih 79 (443)
||||.+-|-+.+.+++.+--+|+..+.+ .|.|..-. +.+.-=.--.+|... .+..-+.+++-+.+. |.
T Consensus 1 KVlvvGaGglG~e~lk~La~~Gvg~i~i-vD~D~Ie~SNLnRQfLf~~~diGk~K-------a~~a~~~l~~~Np~v~I~ 72 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHI-IDLDTIDLSNLNRQFLFRKKHVGKSK-------AQVAKEAVLSFNPNVKIV 72 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCCCCCCCCCHHHCCCCH-------HHHHHHHHHHHCCCCEEE
T ss_conf 9899888888999999999828985999-71992261014668276822188709-------999999999888896799
Q ss_pred CCCCHHHCCHHHH-HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCC
Q ss_conf 5853131097666-889845921626898999872189988776642244332433
Q gi|254780268|r 80 PGYGFLSENAKFA-EILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGS 134 (443)
Q Consensus 80 PGyGfLsEn~~fa-~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~ 134 (443)
+=.+.+.| ..|. +-+++..+.+-|-. ...-|..--+.+...++|-+.+.
T Consensus 73 ~~~~~i~~-~~~~~~f~~~~DvVi~alD-----N~~aR~~vN~~C~~~~~PlIegG 122 (312)
T cd01489 73 AYHANIKD-PDFNVEFFKQFDLVFNALD-----NLAARRHVNKMCLAADVPLIESG 122 (312)
T ss_pred EECCCCCC-CCCCHHHHHHCCEEEECCC-----CHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 86167668-6434988962999997667-----89999999999998399759720
No 369
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=46.16 E-value=22 Score=16.00 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=30.8
Q ss_pred CEEEEEECCCHHHH-HHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCC
Q ss_conf 70686644709999-99998888096599985855771877675857999189
Q gi|254780268|r 2 ISKILIANRGEIAL-RILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGP 53 (443)
Q Consensus 2 ~~~iLianrGeia~-riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~ 53 (443)
||+|+|.|=|-==+ .|.|+++++|.++..+ ++++ ....+|.. .||+
T Consensus 1 Mk~I~Iid~G~~n~~si~~~l~~lg~~~~i~-~~~~----~l~~~d~i-ILPG 47 (201)
T PRK13143 1 MKMIVIIDYGLGNLRSVSKGLERAGADVEIT-SDPE----EILSADGI-VLPG 47 (201)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEEC-CCHH----HHHHCCEE-EECC
T ss_conf 9889999889719999999999869859992-8999----98437967-9738
No 370
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating); InterPro: IPR013357 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NAD(P) as a cofactor. In eukaryotes, at least twenty distinct aldehyde dehydrogenase families have been classified . Many aldehyde dehydrogenases have also been found in prokaryotic species. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase, though these residues are not necessarily conserved in all the enzymes of this family. The acetaldehyde dehydrogenase family (1.2.1.10 from EC) of bacterial enzymes catalyse the formation of acetyl-CoA from acetaldehyde in the degradation of phenols, cresols and catechol . Proteins in this entry occur in bacterial species and are annotated as probable acetaldehyde dehydrogenases, though this function has not been experimentally verified..
Probab=45.49 E-value=22 Score=16.04 Aligned_cols=102 Identities=19% Similarity=0.228 Sum_probs=56.2
Q ss_pred CCEEECCCHHHHHHHHC-HHHHHHHHHHCCCCC--CCCCCCCC---HHHHHHHHHC-----CCCHHHHHCCCCCC--CCE
Q ss_conf 92162689899987218-998877664224433--24333455---7999873200-----33012200023457--821
Q gi|254780268|r 99 HIKFIGPSSEHIKIMGD-KITAKKTAQQLGIPV--VPGSGEVY---PHTAMPIAKE-----IGFPVLVKASAGGG--GRG 165 (443)
Q Consensus 99 Gi~fIGPs~~ai~~~gD-K~~~k~~a~~~GVP~--~p~~~~~~---~~ea~~~a~~-----iGyPviiKp~~gGG--G~G 165 (443)
+-+++-|-|.|..-.=+ =-..++.|.++|-|. +-....++ .+|+..--+. -|-|-||||+|..| -+|
T Consensus 133 NaIv~SPHP~A~kc~i~tv~l~~~AA~~AGaP~g~I~~~t~ptiegTneLMK~kdts~IlATGG~aMVkAAYSSG~PAIG 212 (528)
T TIGR02518 133 NAIVFSPHPNAKKCIIETVKLIRKAAEEAGAPEGAIGCITVPTIEGTNELMKNKDTSLILATGGEAMVKAAYSSGTPAIG 212 (528)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEEECCCHHHHHHECCCCCCCCC
T ss_conf 80576697106789999999999999854798672210102422455554024680689960770253300037786212
Q ss_pred E------EEEEECHHHHHHHHHHHHHHHCCCCCCC-------EEEEEEEE
Q ss_conf 6------8887506689999987543212589981-------68844342
Q gi|254780268|r 166 M------RIAYSENDLSEAIDQARSEALAAFGNDA-------VYIEKYLE 202 (443)
Q Consensus 166 i------~vv~~~~el~~a~~~a~~ea~~~fgd~~-------vlvEk~i~ 202 (443)
+ -....-.+++.|++.... | +.|+++. |+||+.-.
T Consensus 213 VGpGNgPAyIe~~Anv~~Av~~Il~-S-KtFDnGtICASEQSvivE~~n~ 260 (528)
T TIGR02518 213 VGPGNGPAYIERTANVKKAVRKILD-S-KTFDNGTICASEQSVIVEKCNK 260 (528)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHC-C-CCCCCCEEEEECCCEEEECCCH
T ss_conf 1777860101156787899988740-2-5667761653135068615772
No 371
>PRK09148 aminotransferase; Validated
Probab=45.32 E-value=23 Score=15.92 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 989999999987654
Q gi|254780268|r 391 NRKECMMRLNRALNE 405 (443)
Q Consensus 391 ~R~~Ai~~l~~aL~~ 405 (443)
.-++|++|+.++|+.
T Consensus 377 ~L~eal~Rl~~~l~~ 391 (406)
T PRK09148 377 RIRQAARNIKRFLSS 391 (406)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999976
No 372
>PRK11636 mrcA peptidoglycan synthetase; Provisional
Probab=45.19 E-value=20 Score=16.22 Aligned_cols=81 Identities=16% Similarity=0.282 Sum_probs=48.4
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHH-HH--CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 77664224433243334557999873200330122-00--0234578216888750668999998754321258998168
Q gi|254780268|r 120 KKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVL-VK--ASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVY 196 (443)
Q Consensus 120 k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPvi-iK--p~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vl 196 (443)
..+.++.++|.+.-......+.+.+.++++|+|.- +. ++-..|+-++ ++-|+..||. .|.++.++
T Consensus 519 ~AL~~S~N~~aVrl~~~vG~~~~~~~~~~~Gi~~~~~~~~~slaLGs~~v----tplema~AYa--------tfAN~G~~ 586 (850)
T PRK11636 519 QGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTESLALGSASF----TPMQVARGYA--------VMANGGFL 586 (850)
T ss_pred HHHHHCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC----CHHHHHHHHH--------HHHCCCEE
T ss_conf 99984847999999998696999999998499855667663202576776----7999999999--------99739866
Q ss_pred EEEEE-EEEEECCEEEEEECCCCCC
Q ss_conf 84434-2011033157773478702
Q gi|254780268|r 197 IEKYL-ENPRHIEVQIFGDGMGNAI 220 (443)
Q Consensus 197 vEk~i-~~~rhiEvqVl~D~~g~~v 220 (443)
++.+. .. | -|.+|+++
T Consensus 587 ~~P~~I~k---I-----~D~~G~vi 603 (850)
T PRK11636 587 VDPYFISK---I-----ENDQGGVI 603 (850)
T ss_pred CCCEEEEE---E-----ECCCCCEE
T ss_conf 16689999---9-----87999788
No 373
>PRK07064 hypothetical protein; Provisional
Probab=45.13 E-value=23 Score=15.90 Aligned_cols=32 Identities=25% Similarity=0.132 Sum_probs=20.6
Q ss_pred EEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 688875066899999875432125899816884
Q gi|254780268|r 166 MRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 166 i~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
...+.+++++.+.+++|.+.+.+. ..++|+++
T Consensus 131 ~~~v~~~~~~~~~~~~A~~~a~~~-~~GPV~l~ 162 (544)
T PRK07064 131 AFRVRSAETALPTIREAVRVALTA-PTGPVSVE 162 (544)
T ss_pred EEECCCHHHHHHHHHHHHHHHHCC-CCCCEEEE
T ss_conf 875599999999999999999608-99863886
No 374
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=44.80 E-value=23 Score=15.86 Aligned_cols=100 Identities=20% Similarity=0.208 Sum_probs=51.9
Q ss_pred CCEEEEEECCCHH------HHH-HHHHHHHCCCEEEEECCCHHHCCCC--HHHC----CEEEECCCCC-----CC--CHH
Q ss_conf 9706866447099------999-9998888096599985855771877--6758----5799918998-----53--000
Q gi|254780268|r 1 MISKILIANRGEI------ALR-ILRACKELGIPTVAVHSTADSGAMH--VRLA----DESVCIGPPS-----SK--DSY 60 (443)
Q Consensus 1 m~~~iLianrGei------a~r-iira~~elGi~tv~v~s~~D~~a~~--~~~A----De~~~i~~~~-----~~--~sY 60 (443)
|+|||.|.-.|=- ++| ++|+++..|++.+.+|.-..-.-.. +.+. |....-|+.. .. ..-
T Consensus 1 ~~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssr~~~~~~~ 80 (347)
T COG0205 1 MMKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKTE 80 (347)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCCEECCHHHHHHHHHCCCEEEEECCCCCCCCH
T ss_conf 98369998468898307699999999999769789999433234207861214420146798659868754788876567
Q ss_pred CCHHHHHHHHHHCCCCEEEC--CCCHHHCCHHHHHHHHHCC-CEEEC
Q ss_conf 69899999998709989945--8531310976668898459-21626
Q gi|254780268|r 61 LNIQQIVAACEVTGADAIHP--GYGFLSENAKFAEILEDHH-IKFIG 104 (443)
Q Consensus 61 ldi~~ii~~a~~~~~daihP--GyGfLsEn~~fa~~~e~~G-i~fIG 104 (443)
-..+.+++-.++.++|+++. |=|=+ .=|..+.+.+ +++||
T Consensus 81 e~~~~~~~~l~~~gId~LvvIGGDGS~----~gA~~Lae~~~i~vVG 123 (347)
T COG0205 81 EGRKVAAENLKKLGIDALVVIGGDGSY----TGAALLAEEGGIPVVG 123 (347)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHH----HHHHHHHHHCCCCEEE
T ss_conf 799999999998399889997888738----9999999735986896
No 375
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=44.68 E-value=23 Score=15.85 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=8.9
Q ss_pred CHHHHHHHHHCCCEE
Q ss_conf 976668898459216
Q gi|254780268|r 88 NAKFAEILEDHHIKF 102 (443)
Q Consensus 88 n~~fa~~~e~~Gi~f 102 (443)
|..+|+++++.|+.+
T Consensus 71 N~~LA~aA~~~gi~m 85 (326)
T cd02811 71 NRNLAEAAEELGIAM 85 (326)
T ss_pred HHHHHHHHHHCCCCE
T ss_conf 999999999819977
No 376
>PRK08286 cbiC precorrin-8X methylmutase; Validated
Probab=44.57 E-value=11 Score=18.23 Aligned_cols=93 Identities=17% Similarity=0.253 Sum_probs=41.5
Q ss_pred HHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHH--HCCCEEECCCHHHHHHHHCHHHHHHH--HHHCCCCCCCCC
Q ss_conf 00698999999987099899458531310976668898--45921626898999872189988776--642244332433
Q gi|254780268|r 59 SYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILE--DHHIKFIGPSSEHIKIMGDKITAKKT--AQQLGIPVVPGS 134 (443)
Q Consensus 59 sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e--~~Gi~fIGPs~~ai~~~gDK~~~k~~--a~~~GVP~~p~~ 134 (443)
+|++-+.+.+.|++.|..=-. +.+-..++ ...|..||-.|.++-.+-+-+..... +-=.|+|+ |.
T Consensus 101 C~i~d~~v~~~A~~~g~TRsa---------aam~~a~~~~~~aIvvIGNAPTAL~~Ll~li~~g~~~PaLVIG~PV--GF 169 (213)
T PRK08286 101 CYISDPRVVRAAKEQGITRSM---------AAVDIAAEEEGPKLFVFGNAPTALFRLLEMVESGQVTVDAVVGVPV--GF 169 (213)
T ss_pred EECCCCCHHHHHHHCCCCHHH---------HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCC--CC
T ss_conf 975796355787743985899---------9999988766998899808779999999999848998755775585--54
Q ss_pred CCCCHHHHHHHHHCCCCHHH-HHCCCCCCCC
Q ss_conf 34557999873200330122-0002345782
Q gi|254780268|r 135 GEVYPHTAMPIAKEIGFPVL-VKASAGGGGR 164 (443)
Q Consensus 135 ~~~~~~ea~~~a~~iGyPvi-iKp~~gGGG~ 164 (443)
....|.++...+.+.|.+ ++-..||+..
T Consensus 170 --V~A~ESKe~L~~~~vP~It~~GrkGGS~v 198 (213)
T PRK08286 170 --VGAAESKEALTESHIPAIAALGRKGGSNV 198 (213)
T ss_pred --CCCHHHHHHHHHCCCCEEEEECCCCCHHH
T ss_conf --57199999998689997997169874999
No 377
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=44.46 E-value=14 Score=17.31 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=13.4
Q ss_pred CCCCEEEEECCCCCCEEEECCCCCC
Q ss_conf 2442158866899844677760238
Q gi|254780268|r 347 NPGEITYFHAPGGLGIRMDSASYQG 371 (443)
Q Consensus 347 s~G~i~~~~~p~~~gvRvDt~~~~G 371 (443)
-.|....=..+.|-|+|-|.+.-.+
T Consensus 351 ~vgSw~v~d~~cG~glReD~~lIt~ 375 (387)
T COG0754 351 QVGSWVVGDEACGIGLREDRSLITK 375 (387)
T ss_pred EEEEEEECCCCCEEEECCCCCEECC
T ss_conf 8778998751120466268740105
No 378
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=44.37 E-value=23 Score=15.82 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=32.5
Q ss_pred CCEEEEEECCCHHHH------HHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEE
Q ss_conf 970686644709999------99998888096599985855771877675857999
Q gi|254780268|r 1 MISKILIANRGEIAL------RILRACKELGIPTVAVHSTADSGAMHVRLADESVC 50 (443)
Q Consensus 1 m~~~iLianrGeia~------riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~ 50 (443)
|-||||||+-.=||- ++-+-|+|.||..-......-....+...+|-.+.
T Consensus 1 MkKkIlVACGsGIATSTvva~kv~~~~~e~gi~v~i~Q~~i~ev~~~~~~~Dlivt 56 (94)
T PRK10310 1 MKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICT 56 (94)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHCCCCCCEEEE
T ss_conf 99559998588375999999999999998598068999747875541689778999
No 379
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH; InterPro: IPR011909 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterised by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase .; GO: 0006118 electron transport, 0045454 cell redox homeostasis.
Probab=44.26 E-value=12 Score=17.87 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=28.1
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC---HHHHHC
Q ss_conf 8877664224433243334557999873200330---122000
Q gi|254780268|r 118 TAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF---PVLVKA 157 (443)
Q Consensus 118 ~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGy---PviiKp 157 (443)
.+|+.+.+.|++ -.-.......|+.+...++|| |||.+-
T Consensus 14 mTKk~L~~~~i~-Fe~inid~~pea~d~vk~lGF~~~PVi~~~ 55 (72)
T TIGR02194 14 MTKKALEEHGIA-FEEINIDEQPEAVDYVKALGFRQVPVIVAE 55 (72)
T ss_pred HHHHHHHHCCCC-EEEEECCCCHHHHHHHHHCCCEECCEEEEC
T ss_conf 577667637996-157635888437899987486307626767
No 380
>PRK05858 hypothetical protein; Provisional
Probab=44.24 E-value=23 Score=15.80 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=22.6
Q ss_pred EEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 16888750668999998754321258998168844
Q gi|254780268|r 165 GMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEK 199 (443)
Q Consensus 165 Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk 199 (443)
-...+.+++++...+++|.+.|.+. ..++|+|+=
T Consensus 130 ~~~~v~~~~~~~~~l~~A~~~A~~~-~~GPV~l~i 163 (543)
T PRK05858 130 FAATAQSAENAGRLVDQALQAAVSA-HSGVVFVDF 163 (543)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf 5785599999999999999998628-997399993
No 381
>TIGR00021 rpiA ribose 5-phosphate isomerase A; InterPro: IPR004788 Ribose 5-phosphate isomerase (5.3.1.6 from EC), also known as phosphoriboisomerase, catalyses the conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt non-oxidative branch.
Probab=44.23 E-value=9.5 Score=18.58 Aligned_cols=57 Identities=25% Similarity=0.454 Sum_probs=30.0
Q ss_pred HHHHHHH-CCC-EEEC-CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH-H-HHH
Q ss_conf 6688984-592-1626-898999872189988776642244332433345579998732003301-2-200
Q gi|254780268|r 91 FAEILED-HHI-KFIG-PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFP-V-LVK 156 (443)
Q Consensus 91 fa~~~e~-~Gi-~fIG-Ps~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyP-v-iiK 156 (443)
+++.+.+ .++ .+.| |+++ +++++|+++|||...--.....+=+.+=|+++..| + +||
T Consensus 34 LG~~v~~Ge~l~~i~gVpTS~---------~t~~lA~~~GIpl~~l~~~~~lDltIDGADEvdl~~l~lIK 95 (236)
T TIGR00021 34 LGERVKQGEGLDNIVGVPTSK---------QTAELARELGIPLSSLDEVPELDLTIDGADEVDLPNLNLIK 95 (236)
T ss_pred HHHHHHCCCCCCCCEEEECHH---------HHHHHHHHCCCEEECCCCCCEEEEEEECCCCCCCCCCCEEE
T ss_conf 998743677556435884838---------99999998298040225577200686063410303376431
No 382
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.17 E-value=23 Score=15.88 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=27.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 068664470999999998888096599985855
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAVHSTA 35 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v~s~~ 35 (443)
|||+|.+=|-..+-+.|-+++.|.+.++...++
T Consensus 10 k~v~v~GlG~sG~s~a~~L~~~G~~V~~~D~~~ 42 (457)
T PRK01390 10 KTVALFGLGGSGLATARALKAGGAEVIAWDDNP 42 (457)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 989999436999999999997899799993992
No 383
>PRK09191 two-component response regulator; Provisional
Probab=44.12 E-value=24 Score=15.79 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=9.1
Q ss_pred ECHHHHHHHHHHHHHH
Q ss_conf 5066899999875432
Q gi|254780268|r 171 SENDLSEAIDQARSEA 186 (443)
Q Consensus 171 ~~~el~~a~~~a~~ea 186 (443)
+.+|..+.++.|..|-
T Consensus 117 ~~~e~~~l~~~A~~ei 132 (261)
T PRK09191 117 DPAEVAALLDDASREI 132 (261)
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 384
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=44.12 E-value=24 Score=15.79 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=7.8
Q ss_pred HHHHHHHHHHCCCCEE
Q ss_conf 8999999987099899
Q gi|254780268|r 63 IQQIVAACEVTGADAI 78 (443)
Q Consensus 63 i~~ii~~a~~~~~dai 78 (443)
+..+-++.++++.-.|
T Consensus 38 ~~~~k~~~r~~~L~TV 53 (306)
T COG0320 38 YQEIKEILRKNGLHTV 53 (306)
T ss_pred HHHHHHHHHHCCCCEE
T ss_conf 8999999986698525
No 385
>COG3248 Tsx Nucleoside-binding outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=44.11 E-value=9.2 Score=18.69 Aligned_cols=22 Identities=32% Similarity=0.683 Sum_probs=18.6
Q ss_pred CEEEEECCCCCCCCCHHHHHHHCCCCH
Q ss_conf 349982276543320167886325620
Q gi|254780268|r 280 QFYFIEMNTRLQVEHPVTEAITGIDLV 306 (443)
Q Consensus 280 ~~yflEvN~Rlqveh~vte~~tgvdlv 306 (443)
.++|+|+-||+|. .+.||.||-
T Consensus 97 ~~~fmei~PR~S~-----dklTgaDlS 118 (284)
T COG3248 97 HPLFMEIEPRFSI-----DKLTGADLS 118 (284)
T ss_pred CCCEEEECCCEEE-----CCCCCCCCC
T ss_conf 7634885442020-----422266535
No 386
>PRK05868 hypothetical protein; Validated
Probab=44.00 E-value=24 Score=15.78 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=27.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 706866447099999999888809659998
Q gi|254780268|r 2 ISKILIANRGEIALRILRACKELGIPTVAV 31 (443)
Q Consensus 2 ~~~iLianrGeia~riira~~elGi~tv~v 31 (443)
||||||.+-|.-.+=....+++.|+++.++
T Consensus 1 ~~kVlIvGaGiAGlalA~~L~r~G~~VtV~ 30 (372)
T PRK05868 1 MKTVLVSGASVAGTAAAYWLGRHGYSVTMV 30 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999898889999999998589988999
No 387
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=43.86 E-value=24 Score=15.76 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=28.6
Q ss_pred CCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 33012200023457821688875066899999875432125899816884
Q gi|254780268|r 149 IGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 149 iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
+..|=+.|-+.+-|.++. .|.+++||.++++.+.+. +++++||
T Consensus 123 ~~~~d~~~~a~~~G~~~~-~v~~~~el~~al~~a~~~------~~p~li~ 165 (168)
T cd00568 123 LSNPDFAALAEAYGAKGV-RVEDPEDLEAALAEALAA------GGPALIE 165 (168)
T ss_pred CCCCCHHHHHHHCCCEEE-EECCHHHHHHHHHHHHHC------CCCEEEE
T ss_conf 888877899997498699-989999999999999838------9978999
No 388
>cd07047 BMC_PduB_repeat1 1,2-propanediol utilization protein B (PduB), Bacterial Micro-Compartment (BMC) domain repeat 1. PduB proteins are homologs of the carboxysome shell protein. They are encoded within the pdu operon and might be required for the formation of the outer shell of the bacterial pdu polyhedral organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol. Although it has been suggested that PduB might form hexamers and further assemble into the flat facets of the polyhedral outer shell of pdu organelles at present no experimental evidence directly supports this view. PduB proteins contain two tandem BMC domains repeats. This CD contains repeat 1 (the first BMC domain of PduB).
Probab=43.74 E-value=24 Score=15.75 Aligned_cols=66 Identities=32% Similarity=0.486 Sum_probs=42.3
Q ss_pred HHHHHHHHH----CCCCHHHHHCCCCCCCCEEEEE---EECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEE
Q ss_conf 799987320----0330122000234578216888---750668999998754321258998168844342011033157
Q gi|254780268|r 139 PHTAMPIAK----EIGFPVLVKASAGGGGRGMRIA---YSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQI 211 (443)
Q Consensus 139 ~~ea~~~a~----~iGyPviiKp~~gGGG~Gi~vv---~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqV 211 (443)
.+|+....+ +|-+|- -..||+|.|.-++ ++..|.+.+++-|..+-...||| | |...+-|+|.|.
T Consensus 52 ~DEAVKatNtEvi~iElpR---DTkGgaGHG~lii~Ga~dvsD~rravevaL~~~~~~fgd--v----Y~~~aGHlE~qy 122 (134)
T cd07047 52 ADEAVKATNTEVISIELPR---DTKGGAGHGSLILFGAEDVSDVRRAVEVALSETEKTFGD--V----YGSEAGHIELQY 122 (134)
T ss_pred HHHHHHHCCCEEEEEECCC---CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH--H----HCCCCCEEEEEE
T ss_conf 6677741474689998032---378987650499980686789999999999987877655--1----047776079998
Q ss_pred EE
Q ss_conf 77
Q gi|254780268|r 212 FG 213 (443)
Q Consensus 212 l~ 213 (443)
-.
T Consensus 123 Ta 124 (134)
T cd07047 123 TA 124 (134)
T ss_pred EH
T ss_conf 11
No 389
>pfam03932 CutC CutC family. Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length are found in both eukaryotes and bacteria.
Probab=43.32 E-value=24 Score=15.71 Aligned_cols=73 Identities=26% Similarity=0.427 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 98999999987099899458531310976668898459216268989998721899887766422443324333455799
Q gi|254780268|r 62 NIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHT 141 (443)
Q Consensus 62 di~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~e 141 (443)
+++..+ .|.+.|+|=| +|+..+..-|++ ||...++.+ .+...
T Consensus 9 s~~~a~-~A~~~GAdRI-----------ELCs~L~~GGlT---Ps~~~i~~~---------~~~~~-------------- 50 (202)
T pfam03932 9 NIESLL-AAQAGGADRV-----------ELCANLAVGGLT---PSYGVIKSA---------AQRAK-------------- 50 (202)
T ss_pred CHHHHH-HHHHCCCCEE-----------EECCCCCCCCCC---CCHHHHHHH---------HHHCC--------------
T ss_conf 999999-9998499999-----------862676668979---899999999---------98659--------------
Q ss_pred HHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 98732003301220002345782168887506689999987543
Q gi|254780268|r 142 AMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSE 185 (443)
Q Consensus 142 a~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~e 185 (443)
+.-=+||+|..| ..+++++|+....+.+...
T Consensus 51 -------ipv~vMIRPR~G------~F~Ys~~E~~~M~~dI~~~ 81 (202)
T pfam03932 51 -------IPVYVMIRPRGG------DFVYSDHELKAMLEDILKA 81 (202)
T ss_pred -------CCEEEEEECCCC------CCCCCHHHHHHHHHHHHHH
T ss_conf -------974999842799------8864989999999999999
No 390
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=43.20 E-value=24 Score=15.70 Aligned_cols=75 Identities=4% Similarity=0.051 Sum_probs=45.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCC--------CHHHCCEEEE-CCCCCCCCHHCCHHHHHHHHHHCCC
Q ss_conf 866447099999999888809659998585577187--------7675857999-1899853000698999999987099
Q gi|254780268|r 5 ILIANRGEIALRILRACKELGIPTVAVHSTADSGAM--------HVRLADESVC-IGPPSSKDSYLNIQQIVAACEVTGA 75 (443)
Q Consensus 5 iLianrGeia~riira~~elGi~tv~v~s~~D~~a~--------~~~~ADe~~~-i~~~~~~~sYldi~~ii~~a~~~~~ 75 (443)
.++-++|.+. ++-..++++|.+.+.|.++.-.... ....+.-.+. ..+..+.-++-++++.++.+++.++
T Consensus 11 ~i~fG~g~~~-~l~~~~~~~G~k~~lvvt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~V~~nP~~~~v~~~~~~~r~~~~ 89 (383)
T PRK09860 11 VNVIGADSLT-DAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNC 89 (383)
T ss_pred CEEECCCHHH-HHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 1498838999-999999982998799982845665746999999998769958996895279699999999999987399
Q ss_pred CEEEC
Q ss_conf 89945
Q gi|254780268|r 76 DAIHP 80 (443)
Q Consensus 76 daihP 80 (443)
|.|..
T Consensus 90 D~iva 94 (383)
T PRK09860 90 DSVIS 94 (383)
T ss_pred CEEEE
T ss_conf 99999
No 391
>PRK13138 consensus
Probab=43.01 E-value=24 Score=15.68 Aligned_cols=220 Identities=15% Similarity=0.155 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC-----CCCEEECCCC
Q ss_conf 99999999888809659998---585577187767585799918998530006989999999870-----9989945853
Q gi|254780268|r 12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT-----GADAIHPGYG 83 (443)
Q Consensus 12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~-----~~daihPGyG 83 (443)
|.-.++++++-+.|...+=+ +|||=..-+-.+.|.+.. |..+ .+.+.+++..++- +.--|+=||-
T Consensus 27 e~t~~~~~~l~~~GadiiEiGiPFSDP~ADGPvIq~A~~rA-L~~G------~~~~~~~~~~~~ir~~~~~~pivlM~Y~ 99 (264)
T PRK13138 27 DSCIIWADALIRGGAGILELGIPFSDPVADGPVIQKAFKRA-LAHP------FSMDKILEITAEIHKLHPEIPLVYLTYF 99 (264)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HHCC------CCHHHHHHHHHHHCCCCCCCCEEEEEEH
T ss_conf 99999999999779998997998888666589999999999-9779------9088974467760335898888975212
Q ss_pred --HHHCC-HHHHHHHHHCCCE-EECCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHH-CCCCHHHH
Q ss_conf --13109-7666889845921-62689--899987218998877664224433243334557999-87320-03301220
Q gi|254780268|r 84 --FLSEN-AKFAEILEDHHIK-FIGPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTA-MPIAK-EIGFPVLV 155 (443)
Q Consensus 84 --fLsEn-~~fa~~~e~~Gi~-fIGPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea-~~~a~-~iGyPvii 155 (443)
+++-. ..|++.|.++|+. +|=|. .+.- +-..++..+++.|+..++.....+.++. ...++ .-||=..+
T Consensus 100 N~i~~~G~e~F~~~~~~~GvdGlIipDLP~e~~----E~~~~~~~~~~~~i~~I~liaPtt~~~Ri~~i~~~s~gFiY~V 175 (264)
T PRK13138 100 NPLFSMGLEAFTERAKNSGIQGLIIPDLPFDTP----EAEEFFSQLERKKIDFIHLVTPATTEDRIQSMKSFASGFIYYV 175 (264)
T ss_pred HHHHHHCHHHHHHHHHHCCCCEEECCCCCCCCH----HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 389884899999999876977585368986503----3599999999869986752179998999999997388808987
Q ss_pred HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC-EEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 00234578216888750668999998754321258998168844342011033-15777347870236566542113562
Q gi|254780268|r 156 KASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE-VQIFGDGMGNAIHFGERDCSVQRRNQ 234 (443)
Q Consensus 156 Kp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE-vqVl~D~~g~~v~l~erdCSiQrr~q 234 (443)
--...-|.++ ...+++.+.+++.++.. +-++.+-==|..+.|+. +.-.+|| +.+|-. + -
T Consensus 176 s~~GvTG~~~----~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~~~~~~~~ADG----vIVGSa---i----v 235 (264)
T PRK13138 176 TSYGVTGERG----AIASGLEDRIQMVRKIV-----GLPVCAGFGISTADQAKEISTYADG----VIIGSA---V----Q 235 (264)
T ss_pred ECCCCCCCCC----CCCHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHCCCE----EEECHH---H----H
T ss_conf 5456678765----55376999999999743-----8983886067989999999834999----998199---9----9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 255403445588999999999999988651
Q gi|254780268|r 235 KIWEEAHSPVISAQDRTEIGETCVKAMKKI 264 (443)
Q Consensus 235 kiiEeaPap~l~~~~~~~i~~~A~~~~~~~ 264 (443)
|+||+...+ .+...+++..++..+-.++
T Consensus 236 ~~i~~~~~~--~~~~~~~v~~~~~~lk~~~ 263 (264)
T PRK13138 236 KIIEENGSD--RENCADKLFAYASEIRASM 263 (264)
T ss_pred HHHHHCCCC--HHHHHHHHHHHHHHHHHHH
T ss_conf 999972787--7789999999999999963
No 392
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=42.99 E-value=24 Score=15.67 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=12.8
Q ss_pred EEEECCCHHHHHHHHHHHHHH
Q ss_conf 999559989999999987654
Q gi|254780268|r 385 LIVHGKNRKECMMRLNRALNE 405 (443)
Q Consensus 385 iI~~g~~R~~Ai~~l~~aL~~ 405 (443)
++..+.|.++=++...+||.+
T Consensus 320 ~~~~~~~~~~F~~~i~~al~~ 340 (373)
T cd04950 320 VVLIADDPEEFVAAIEKALLE 340 (373)
T ss_pred EEEECCCHHHHHHHHHHHHHC
T ss_conf 799779999999999999843
No 393
>TIGR01027 proB glutamate 5-kinase; InterPro: IPR005715 L-glutamate 5-phosphotransferase, (gamma-glutamyl kinase, proB, 2.7.2.11 from EC), catalyzes the first step in proline biosynthesis ATP + L-glutamate = ADP + L-glutamate 5-phosphate. the product of which rapidly cyclises to 5-oxoproline and phosphate. Bacterial ProB proteins hits the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues. ; GO: 0004349 glutamate 5-kinase activity, 0006561 proline biosynthetic process, 0005737 cytoplasm.
Probab=42.88 E-value=25 Score=15.66 Aligned_cols=222 Identities=18% Similarity=0.246 Sum_probs=116.6
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHH---HHHCCCCEEECCCCHHHCCH-
Q ss_conf 99999988880965999858557718776758579991899853000698999999---98709989945853131097-
Q gi|254780268|r 14 ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAA---CEVTGADAIHPGYGFLSENA- 89 (443)
Q Consensus 14 a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~---a~~~~~daihPGyGfLsEn~- 89 (443)
|.+-+.+|.++|+=.|. .+-|+.|. +-+.+|.++....+ +..++++ ..-+.+|+++ .+||
T Consensus 117 Ar~TL~~Ll~~gvvPIi--NENDTVav------eEi~fGDND~LSAl--vA~Lv~AD~L~LLTD~dGLY------d~dPR 180 (379)
T TIGR01027 117 ARNTLEALLELGVVPII--NENDTVAV------EEIKFGDNDTLSAL--VAILVGADLLVLLTDVDGLY------DADPR 180 (379)
T ss_pred HHHHHHHHHHCCCEEEE--ECCCCEEE------EEEEECCCCHHHHH--HHHHHHHHHHHHHCCCCCCC------CCCCC
T ss_conf 99999999865947898--67742244------00054678169999--99999752897761755330------68745
Q ss_pred -----HHHHHHHHCC---CEEECCC-HHH-HHH--HHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHC
Q ss_conf -----6668898459---2162689-899-987--218998877664224433243334557999873200330122000
Q gi|254780268|r 90 -----KFAEILEDHH---IKFIGPS-SEH-IKI--MGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKA 157 (443)
Q Consensus 90 -----~fa~~~e~~G---i~fIGPs-~~a-i~~--~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp 157 (443)
.|-..+++-. ...=|-| ... +-+ |..|+.+=++|.++||||+=.. ...++.+.++.+.+ |
T Consensus 181 ~nPdA~~I~~V~~~~~~~~~~aG~S~g~~~~GTGGM~sK~~AA~~A~~~Gv~v~i~~-g~~P~~i~~~~~hh-f------ 252 (379)
T TIGR01027 181 TNPDAKLIPVVEEITDLLLGVAGDSSGSSKVGTGGMRSKIEAARLATRAGVPVIIAS-GSKPEKIADALEHH-F------ 252 (379)
T ss_pred CCCCCEECCCCCCCCHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHHHHHHHHH-C------
T ss_conf 378514534124533234111146677887566467899999999986899589944-88978999999974-0------
Q ss_pred CCCCCCCEEEEEEE-CHH-HHHHHHHHHHHHHCCCCCCCEEEEEEEEEE-EECC--------EEEEEE-CCCCCCCCCCC
Q ss_conf 23457821688875-066-899999875432125899816884434201-1033--------157773-47870236566
Q gi|254780268|r 158 SAGGGGRGMRIAYS-END-LSEAIDQARSEALAAFGNDAVYIEKYLENP-RHIE--------VQIFGD-GMGNAIHFGER 225 (443)
Q Consensus 158 ~~gGGG~Gi~vv~~-~~e-l~~a~~~a~~ea~~~fgd~~vlvEk~i~~~-rhiE--------vqVl~D-~~g~~v~l~er 225 (443)
-|-..|-.+.-. ... |+..=.+....+.. .+.|+|++==+.+ ++=- ++|-|+ ..|.+|-+
T Consensus 253 --yg~~~GT~F~a~~~~~~L~~rk~Wi~~~~~~---~G~i~vD~GA~~Al~~~G~SLLp~Gi~~V~G~F~~GdvV~i--- 324 (379)
T TIGR01027 253 --YGAPVGTVFEAQEARRKLRARKQWIAFASEP---KGKITVDAGAEEALKERGKSLLPAGIVEVEGNFSRGDVVEI--- 324 (379)
T ss_pred --CCCCCCCEECCCCCCHHHHHHHHHHHHCCCC---CCEEEECHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEE---
T ss_conf --3778774433577650267899999843776---74688752589999837871143113666201476456986---
Q ss_pred CCCCCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 542113562--25540344558899999999999998865154341
Q gi|254780268|r 226 DCSVQRRNQ--KIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGA 269 (443)
Q Consensus 226 dCSiQrr~q--kiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~ 269 (443)
|+ ||--+ ..|=-.-.-+=++++++-....+..+-..|||.+-
T Consensus 325 -~~-qrl~~G~~~iG~G~v~Y~S~eL~~i~G~~s~ei~~~LgY~~~ 368 (379)
T TIGR01027 325 -LN-QRLPEGKQLIGRGLVNYSSDELEKIKGLKSSEIEAVLGYEYG 368 (379)
T ss_pred -EC-CCCCCCCCEECCCCCCCCHHHHHHHHCCCCHHHHHHCCCCCC
T ss_conf -12-534012620101024569899999846771365764088898
No 394
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=42.87 E-value=4.1 Score=21.18 Aligned_cols=56 Identities=27% Similarity=0.272 Sum_probs=34.0
Q ss_pred CCEEEECC--CCCCCEECCCCCCC----EEEEEEECCCH-HHHHHHHHHHHH-HCE-ECCCCCCH
Q ss_conf 84467776--02387707776843----38999955998-999999998765-408-82637788
Q gi|254780268|r 360 LGIRMDSA--SYQGYTVPSYYDSL----IAKLIVHGKNR-KECMMRLNRALN-EII-IDGIKTTI 415 (443)
Q Consensus 360 ~gvRvDt~--~~~G~~i~~~yDsm----laKiI~~g~~R-~~Ai~~l~~aL~-~~~-I~Gv~TN~ 415 (443)
.|||+||| .+....+--.||.+ ..|+|+.+.+- ++.+..+.+..+ ... .-||-||+
T Consensus 275 ~GVRlDSGDl~~~~~~~r~~~d~~G~~~~~k~iv~S~~LDe~~i~~l~~~~~~~~~~~fGIGT~L 339 (377)
T cd01401 275 DGVRHDSGDPFEWGEKAIAHYEKLGIDPKTKTLVFSDGLDVEKALELYEYFKGRIKVSFGIGTNL 339 (377)
T ss_pred CEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEECCCCC
T ss_conf 78853786789999999999997798957628999189899999999998648986489858676
No 395
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=42.84 E-value=25 Score=15.66 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=11.0
Q ss_pred ECCCHHHHHHHHHHHHHH
Q ss_conf 559989999999987654
Q gi|254780268|r 388 HGKNRKECMMRLNRALNE 405 (443)
Q Consensus 388 ~g~~R~~Ai~~l~~aL~~ 405 (443)
.+.+.++++.+|.+.|-.
T Consensus 362 ~~~~~~e~ie~l~~~i~n 379 (414)
T PRK13940 362 NGKDAEEIIKRFAYEIKK 379 (414)
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 999899999999999999
No 396
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=42.83 E-value=25 Score=15.66 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=21.6
Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 21688875066899999875432125899816884
Q gi|254780268|r 164 RGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 164 ~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
+-...+.+++++...+++|.+.+.. ..++++++
T Consensus 126 k~~~~v~~~~~~~~~~~~A~r~A~~--~~Gpv~l~ 158 (574)
T PRK09124 126 HYCELVSNPEQLPRVLAIAMRAAIL--NRGVAVVV 158 (574)
T ss_pred HHEEEECCHHHHHHHHHHHHHHHHC--CCCCEEEE
T ss_conf 2032406765649999999999857--99962785
No 397
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=42.82 E-value=25 Score=15.66 Aligned_cols=77 Identities=23% Similarity=0.258 Sum_probs=35.8
Q ss_pred EEEEECCCHHH-----HHHHHHHHHCCCEEEEECCCHHHCCCC-HHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCE
Q ss_conf 68664470999-----999998888096599985855771877-675857999189985300069899999998709989
Q gi|254780268|r 4 KILIANRGEIA-----LRILRACKELGIPTVAVHSTADSGAMH-VRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADA 77 (443)
Q Consensus 4 ~iLianrGeia-----~riira~~elGi~tv~v~s~~D~~a~~-~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~da 77 (443)
--||.++..+. .+.+..+-+.|+..+-+ -+.+..... ...|-+...+...... -+=++.=+++|.+.++|+
T Consensus 8 lylvt~~~~~~~~~~~~~~ve~al~~Gv~~vQl-R~K~~~~~~~~~~a~~~~~lc~~~~v--~liINd~~dlA~~~~AdG 84 (211)
T COG0352 8 LYLVTDRPLIYDGVDLLEWVEAALKGGVTAVQL-REKDLSDEEYLALAEKLRALCQKYGV--PLIINDRVDLALAVGADG 84 (211)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEE-ECCCCCHHHHHHHHHHHHHHHHHHCC--EEEECCCHHHHHHCCCCE
T ss_conf 589817755664110699999999679949998-02898749999999999999998198--099668399997679988
Q ss_pred EECCCC
Q ss_conf 945853
Q gi|254780268|r 78 IHPGYG 83 (443)
Q Consensus 78 ihPGyG 83 (443)
||-|+.
T Consensus 85 VHlGq~ 90 (211)
T COG0352 85 VHLGQD 90 (211)
T ss_pred EEECCC
T ss_conf 970876
No 398
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=42.52 E-value=25 Score=15.62 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=30.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCC
Q ss_conf 6866447099999999888809659998585577187
Q gi|254780268|r 4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAM 40 (443)
Q Consensus 4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~ 40 (443)
||||.+-|-+.+.+++.+-.+|+..+.+ .|.|....
T Consensus 1 KVlvvGaGglGce~~k~La~~Gvg~i~i-iD~D~Ie~ 36 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHV-IDMDTIDV 36 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE-ECCCEECC
T ss_conf 9899948887999999999839986999-75990056
No 399
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=42.33 E-value=25 Score=15.61 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=11.2
Q ss_pred HHHHHHHHHHCCCEEEEECCC
Q ss_conf 999999888809659998585
Q gi|254780268|r 14 ALRILRACKELGIPTVAVHST 34 (443)
Q Consensus 14 a~riira~~elGi~tv~v~s~ 34 (443)
+...++.+++.|+..++| ||
T Consensus 34 ~~~al~~l~~~g~~~~iv-TN 53 (181)
T PRK08942 34 SIEAIARLKQAGYRVVVA-TN 53 (181)
T ss_pred HHHHHHHHHHCCCEEEEE-EC
T ss_conf 899999999879969999-58
No 400
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=42.23 E-value=25 Score=15.60 Aligned_cols=144 Identities=21% Similarity=0.212 Sum_probs=62.5
Q ss_pred HHHHHHHHHCCCEEEEECCCHHHCCCCHHH-CC----EEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE--ECCCCHHHC
Q ss_conf 999998888096599985855771877675-85----79991899853000698999999987099899--458531310
Q gi|254780268|r 15 LRILRACKELGIPTVAVHSTADSGAMHVRL-AD----ESVCIGPPSSKDSYLNIQQIVAACEVTGADAI--HPGYGFLSE 87 (443)
Q Consensus 15 ~riira~~elGi~tv~v~s~~D~~a~~~~~-AD----e~~~i~~~~~~~sYldi~~ii~~a~~~~~dai--hPGyGfLsE 87 (443)
.+.++.+.+.|...|+++. ......... .+ -...++-+....+.-..-.-.+-|.+.|+|.| ..-||.+.+
T Consensus 16 ~~~~~~a~~~~~~av~v~p--~~v~~~~~~l~~~~~~v~~vv~fp~g~~~~~~k~~e~~~ai~~GAdeid~v~~~~~~~~ 93 (201)
T cd00945 16 AKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKE 93 (201)
T ss_pred HHHHHHHHHHCCCEEEECH--HHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHC
T ss_conf 9999999862982999889--99999999808999838999588999997779999999999909998997405677756
Q ss_pred -C-----HHHHHHHH--HCCCEEEC-CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC-----CCHHHHHHHHHCCCCHH
Q ss_conf -9-----76668898--45921626-89899987218998877664224433243334-----55799987320033012
Q gi|254780268|r 88 -N-----AKFAEILE--DHHIKFIG-PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE-----VYPHTAMPIAKEIGFPV 153 (443)
Q Consensus 88 -n-----~~fa~~~e--~~Gi~fIG-Ps~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~-----~~~~ea~~~a~~iGyPv 153 (443)
+ .++.+.++ +.|++..- .-+..+....-+..+-+++.++|.--+.-+.. .+.+......+.++.++
T Consensus 94 ~~~~~~~~ei~~v~~~~~~g~~~kvi~e~~~l~~~~~i~~a~~~~~~~GadfvKtstG~~~~~at~~~v~~m~~~~~~~~ 173 (201)
T cd00945 94 GDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRV 173 (201)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 68899999999999973579837999616778999999999999998099879855887889899999999999828786
Q ss_pred HHHCCCC
Q ss_conf 2000234
Q gi|254780268|r 154 LVKASAG 160 (443)
Q Consensus 154 iiKp~~g 160 (443)
-||++.|
T Consensus 174 ~vk~sGG 180 (201)
T cd00945 174 GVKAAGG 180 (201)
T ss_pred EEECCCC
T ss_conf 3863589
No 401
>PRK00124 hypothetical protein; Validated
Probab=42.19 E-value=25 Score=15.59 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=63.4
Q ss_pred EEEE-ECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCC-CCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf 6866-447099999999888809659998585577187767585799918998-53000698999999987099899458
Q gi|254780268|r 4 KILI-ANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPS-SKDSYLNIQQIVAACEVTGADAIHPG 81 (443)
Q Consensus 4 ~iLi-anrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~-~~~sYldi~~ii~~a~~~~~daihPG 81 (443)
||+| |..=++--.++|+|++.+++++.|.+ -....+.-... +.+.++.+. ..+-| |++ .-..-|-|-
T Consensus 2 kI~VDADACPVk~~i~~~a~r~~i~v~~Van-~~~~~~~~~~i-~~v~V~~g~DaAD~~-----I~~--~~~~gDiVI-- 70 (149)
T PRK00124 2 KIYVDADACPVKEIIYRVAERHGIPVTLVAN-HFLRVPYSPFI-RTLYVDSGFDAADNE-----IVE--RAEKGDIVI-- 70 (149)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCEEEEEEC-CCCCCCCCCCE-EEEEECCCCCHHHHH-----HHH--HCCCCCEEE--
T ss_conf 7999888894099999999986976999968-97069998764-899989997639999-----998--388999999--
Q ss_pred CCHHHCCHHHHHHHHHCCCEEECCC-----HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 5313109766688984592162689-----899987218998877664224433243334557999873200
Q gi|254780268|r 82 YGFLSENAKFAEILEDHHIKFIGPS-----SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKE 148 (443)
Q Consensus 82 yGfLsEn~~fa~~~e~~Gi~fIGPs-----~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~ 148 (443)
.-+--+|..|-+.|...|.|+ .+.|..+-..-.+.+-+++.|.-+ .|-..-+.++-..|++.
T Consensus 71 ----T~DipLAa~~l~Kga~vi~prG~~yt~~NI~~~L~~R~~~~~lR~~G~~t-~Gp~~f~~~Dr~~F~~~ 137 (149)
T PRK00124 71 ----TQDYPLAAEALEKGAIVLNPRGEIYTNDNIDMLLAMRDLMATLRRSGGRT-GGPKPFTPEDRSRFEAE 137 (149)
T ss_pred ----ECCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHH
T ss_conf ----69889999999879899999986898878999999888889999739989-99999999999999999
No 402
>PRK08617 acetolactate synthase; Reviewed
Probab=42.13 E-value=25 Score=15.58 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=22.2
Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 21688875066899999875432125899816884
Q gi|254780268|r 164 RGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 164 ~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
|-...+.+++++.+.+++|.+.|... .-++|+++
T Consensus 127 k~s~~v~~~~~~~~~l~~A~~~A~~~-~~GPV~l~ 160 (552)
T PRK08617 127 KYSAEVQDPDNLSEVLANAFRAAESG-KPGAAFVS 160 (552)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHCC-CCCEEEEE
T ss_conf 00699677899899999999998618-99629998
No 403
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=41.98 E-value=25 Score=15.57 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=24.0
Q ss_pred HHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCH
Q ss_conf 999998709989945853131097666889845921626898
Q gi|254780268|r 66 IVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSS 107 (443)
Q Consensus 66 ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~ 107 (443)
.-++..+.++.+|.+ |+= +.....+..+++.++++|.|+.
T Consensus 59 a~kLi~~d~V~~i~g-~~s-~~~~A~~~~~~~~~vp~i~~~~ 98 (351)
T cd06334 59 YERLKGEDGAVAFQG-WST-GITEALIPKIAADKIPLMSGSY 98 (351)
T ss_pred HHHHHHCCCEEEECC-CCC-HHHHHHHHHHHHHCCCEEECCC
T ss_conf 999985398266568-886-7899999999981992895246
No 404
>TIGR02024 FtcD glutamate formiminotransferase; InterPro: IPR004227 This entry represents the formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD), which forms a homodimer, with each protomer being comprised of two subdomains. Tetrahydrofolate (THF)-dependent glutamate formiminotransferase is involved in the histidine utilization pathway. This enzyme interconverts L-glutamate and N-formimino-L-glutamate. The enzyme is bifunctional as it also catalyzes the cyclodeaminase reaction on N-formimino-THF, converting it to 5,10-methenyl-THF and releasing ammonia; part of the process of regenerating THF. This model covers enzymes from metazoa as well as Gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype . The crystal structure of the enzyme has been studied in the context of the catalytic mechanism . ; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process.
Probab=41.96 E-value=25 Score=15.57 Aligned_cols=150 Identities=23% Similarity=0.313 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHC-CCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC-------CCCEEECCCC
Q ss_conf 9999999988880-9659998585577187767585799918998530006989999999870-------9989945853
Q gi|254780268|r 12 EIALRILRACKEL-GIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT-------GADAIHPGYG 83 (443)
Q Consensus 12 eia~riira~~el-Gi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~-------~~daihPGyG 83 (443)
|+-=+|..++++. +++-+=+-+|+|.|=+ = .-++|++. .- +++++..||.. +..+=||=.|
T Consensus 18 e~ie~I~~~~~~~~~v~~LD~~~d~dHNRs----V--~T~vG~Pe---~v--~~A~~~~aK~A~eLIDm~~H~G~HPRMG 86 (331)
T TIGR02024 18 EVIEKIVDAIKKVDNVKILDVDSDPDHNRS----V--ITFVGEPE---KV--VNAALKLAKKAAELIDMRNHKGEHPRMG 86 (331)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCCE----E--EEEECCHH---HH--HHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 688988998631796589986477799866----8--99865858---99--9999998878676530014787779524
Q ss_pred HHHCCHHHHHHHHHCCCEEECC-----CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHH-------------HHHHH
Q ss_conf 1310976668898459216268-----98999872189988776642244332433345579-------------99873
Q gi|254780268|r 84 FLSENAKFAEILEDHHIKFIGP-----SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPH-------------TAMPI 145 (443)
Q Consensus 84 fLsEn~~fa~~~e~~Gi~fIGP-----s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~-------------ea~~~ 145 (443)
.+- =++|| | .-++++. -|..=|++.+++||||-=+......+ +-..+
T Consensus 87 A~D------------ViPF~-Pv~~~~~EECV~~--A~~~Gkr~GEELGvPVYLYe~AA~~p~R~~La~IRkGnfqYE~l 151 (331)
T TIGR02024 87 AVD------------VIPFI-PVKDVTMEECVEL--AKELGKRLGEELGVPVYLYEEAATRPERQTLAAIRKGNFQYEAL 151 (331)
T ss_pred CEE------------ECCCC-CCCCCCHHHHHHH--HHHHHHHHHHHCCCCEEECHHHCCCCCCCCCHHHHCCCCCHHHH
T ss_conf 410------------00531-3789848999999--99861585664588532225454885114617782776510233
Q ss_pred HHCC---C-----CHHHHHCCCCCCCCEEEE---E------EECHHHHHHHHHHHHHHH
Q ss_conf 2003---3-----012200023457821688---8------750668999998754321
Q gi|254780268|r 146 AKEI---G-----FPVLVKASAGGGGRGMRI---A------YSENDLSEAIDQARSEAL 187 (443)
Q Consensus 146 a~~i---G-----yPviiKp~~gGGG~Gi~v---v------~~~~el~~a~~~a~~ea~ 187 (443)
.++| - -|--+.|..|+.=.|-|. + ...-|..+.+.++.+.+.
T Consensus 152 ~eKiK~~~WkPDfGP~~~~Pk~G~Ta~GAR~fLiAFNvNL~t~n~Eia~kIA~~~R~~~ 210 (331)
T TIGR02024 152 FEKIKDPKWKPDFGPSEVNPKAGATAVGARKFLIAFNVNLGTSNLEIAKKIAKAVRFKG 210 (331)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 88616755778898871365356347602534044440478763379999999842126
No 405
>PRK13135 consensus
Probab=41.78 E-value=25 Score=15.55 Aligned_cols=214 Identities=16% Similarity=0.216 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC----CCCEEECCCC--
Q ss_conf 9999999888809659998---585577187767585799918998530006989999999870----9989945853--
Q gi|254780268|r 13 IALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT----GADAIHPGYG-- 83 (443)
Q Consensus 13 ia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~----~~daihPGyG-- 83 (443)
.-.++++++.+.|...|=+ +|||=..-+-.+.|.+.- |. +=.+.+.+++..++. +.--|.=||-
T Consensus 32 ~s~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rA-L~------~G~~~~~~~~~~~~~r~~~~~PivlM~Y~N~ 104 (267)
T PRK13135 32 TTEALIPLLAESGADIIELGVPFSDPMADGPTIQLSSERA-LA------AGTTLPRILAMVRSVRRRCQVPIVLMGYYNP 104 (267)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHHHCCCCCCEEEEECCHH
T ss_conf 9999999999759999997899898666589999999999-97------6984999999999863358998899842309
Q ss_pred HHHCC-HHHHHHHHHCCCE-EECCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHH-CCCCHHH--H
Q ss_conf 13109-7666889845921-62689--89998721899887766422443324333455799987-320-0330122--0
Q gi|254780268|r 84 FLSEN-AKFAEILEDHHIK-FIGPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMP-IAK-EIGFPVL--V 155 (443)
Q Consensus 84 fLsEn-~~fa~~~e~~Gi~-fIGPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~-~a~-~iGyPvi--i 155 (443)
++.-. ..|++.|.++|+. +|=|. ++ .-...+..+++.|+..++.....+.++... +++ .=||=.. +
T Consensus 105 i~~yG~e~F~~~~~~~GvdGlIipDLP~e------e~~~~~~~~~~~~l~~I~lvsPtt~~~Ri~~i~~~s~GFiY~Vs~ 178 (267)
T PRK13135 105 IFAYGLERFAADAAAAGVDGVLLVDLPPE------EAEEFKACADRHGLDVIFLLTPTSDESRIRTVARLGRGFVYYVSV 178 (267)
T ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCHH------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEC
T ss_conf 98846899999999749974763789978------889999999872961899808989579999999618981899854
Q ss_pred HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC-EEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 00234578216888750668999998754321258998168844342011033-15777347870236566542113562
Q gi|254780268|r 156 KASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE-VQIFGDGMGNAIHFGERDCSVQRRNQ 234 (443)
Q Consensus 156 Kp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE-vqVl~D~~g~~v~l~erdCSiQrr~q 234 (443)
+.+-| .+- ...+++.+.+.+.++.. +-++.+-==|..+.|+. +.-.+| .+.+|-. + -
T Consensus 179 ~GvTG-----~~~-~~~~~~~~~i~~ik~~t-----~~Pv~vGFGI~~~e~v~~i~~~AD----GvIVGSa---i----V 236 (267)
T PRK13135 179 TGVTG-----ARS-GVEATVGGNVAKIREKI-----TVPVVVGFGISTPQQAADVAAMAD----GVVVGSA---L----V 236 (267)
T ss_pred CCCCC-----CCC-CCHHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHCCCC----EEEECHH---H----H
T ss_conf 56667-----764-44488999999998606-----898489816799999999980599----9998789---9----9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 2554034455889999999999999886515
Q gi|254780268|r 235 KIWEEAHSPVISAQDRTEIGETCVKAMKKID 265 (443)
Q Consensus 235 kiiEeaPap~l~~~~~~~i~~~A~~~~~~~g 265 (443)
|+||+.+ .++..+++.++...+-+++.
T Consensus 237 k~ie~~~----~~~~~~~i~~fv~~lk~ai~ 263 (267)
T PRK13135 237 KLFELHR----GEELRQEVATFVASLRQAIP 263 (267)
T ss_pred HHHHHCC----CHHHHHHHHHHHHHHHHHHH
T ss_conf 9998608----18789999999999999975
No 406
>TIGR00624 tag DNA-3-methyladenine glycosylase I; InterPro: IPR004597 One common form of damage to DNA occurs when alkyl groups become covalently linked to DNA, leading to the formation of mutagenic or toxic lesions. Alkylating agents are ubiquitous in the environment and can also exist endogenously; for example S-adenosylmethionine, a commonly used methyl donor in many cellualr pathways, can produce methylation damage. Given the prevalence of alkylating agents it is not surprising that all cellular organisms studied so far have developed repair systems to deal with DNA alkylation . DNA-3-methyladenine glycosylase I (also known as TagI) is part of the broader helix-hairpin-helix DNA repair glycosylase supefamily. It specifically catalyses the release of 3-methylated adenine and, to a lesser extent, guanosine bases from DNA by hydrolysis of the deoxyribose N-glycosidic bond , . A phylogenomic study suggests that TagI evolved in, and is specific to, the bacteria .; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair.
Probab=41.76 E-value=11 Score=18.25 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=44.8
Q ss_pred HHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHH
Q ss_conf 84592162689899987218998877664224433243334557999873200330122000234578216888750668
Q gi|254780268|r 96 EDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDL 175 (443)
Q Consensus 96 e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el 175 (443)
-++||.|| -.+.-+..+|+.+....|.-+.-+...+.++++.-. .||+|.--+
T Consensus 43 fQaGLSWi-------~vLrKREnyR~~f~~FD~~~vA~~~~~dv~rL~~D~--------------------GIiRnR~Ki 95 (185)
T TIGR00624 43 FQAGLSWI-------TVLRKRENYRRAFSQFDIQKVARMTDADVERLLLDD--------------------GIIRNRLKI 95 (185)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHCCC--------------------CEECCCHHH
T ss_conf 87568999-------998744789998721787898601577799973288--------------------801001889
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999987543212
Q gi|254780268|r 176 SEAIDQARSEALA 188 (443)
Q Consensus 176 ~~a~~~a~~ea~~ 188 (443)
++++..|+..+.-
T Consensus 96 ~A~i~NArA~l~l 108 (185)
T TIGR00624 96 EATIANARAALAL 108 (185)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999985
No 407
>PRK05920 aromatic acid decarboxylase; Validated
Probab=41.75 E-value=25 Score=15.55 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=29.9
Q ss_pred CCEEEEEECCCH----HHHHHHHHHHHCCCEEEEECCCHHHC
Q ss_conf 970686644709----99999998888096599985855771
Q gi|254780268|r 1 MISKILIANRGE----IALRILRACKELGIPTVAVHSTADSG 38 (443)
Q Consensus 1 m~~~iLianrGe----ia~riira~~elGi~tv~v~s~~D~~ 38 (443)
+||||.|+=-|- .|+|.++.+++.|+++-+|.|+....
T Consensus 3 ~mkrivvgITGASG~~ya~rll~~L~~~~~ev~lviS~~a~~ 44 (205)
T PRK05920 3 KMKRIVLAITGASGAIYGVRLLECLLAADYEVHLVISKAARK 44 (205)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECHHHHH
T ss_conf 887599998654279999999999986799899998678999
No 408
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=41.45 E-value=26 Score=15.51 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=18.2
Q ss_pred EEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 88875066899999875432125899816884
Q gi|254780268|r 167 RIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 167 ~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
..+.+++++.+.+++|.+.+.+. .-++|++|
T Consensus 130 ~~v~~~~~i~~~l~~A~~~A~~~-r~GPV~l~ 160 (574)
T PRK06466 130 FMVKHASEIPEVIKKAFYIAQSG-RPGPVVVD 160 (574)
T ss_pred EEECCHHHHHHHHHHHHHHHHHC-CCCCEEEC
T ss_conf 34089999999999999998767-99626953
No 409
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=41.44 E-value=26 Score=15.53 Aligned_cols=56 Identities=27% Similarity=0.463 Sum_probs=30.2
Q ss_pred EEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf 66447099999999888809659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r 6 LIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY 82 (443)
Q Consensus 6 LianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy 82 (443)
||.+||--. +++..||+..--++..|...+. .++. |.-.++++. +.+|+++||||-
T Consensus 336 lIiGr~Lt~----kar~~Lgl~~s~~F~~p~~~~~----~~~G-----------~TlaqKmvg--kAcG~~gv~pG~ 391 (841)
T PRK09238 336 LIIGRGLTT----KAREALGLPPSDVFRRPKQPAD----SGKG-----------FTLAQKMVG--RACGVPGVRPGT 391 (841)
T ss_pred EEECHHHHH----HHHHHCCCCHHHHCCCCCCCCC----CCCC-----------EEHHHHHHH--HHCCCCCCCCCC
T ss_conf 996345559----9999809991763478878887----8875-----------139999988--733998767787
No 410
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=41.38 E-value=21 Score=16.12 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=5.9
Q ss_pred HHHHHHCCCCHHHHH
Q ss_conf 987320033012200
Q gi|254780268|r 142 AMPIAKEIGFPVLVK 156 (443)
Q Consensus 142 a~~~a~~iGyPviiK 156 (443)
..++-+.+.-|||-|
T Consensus 69 i~eim~aVsIPVMAK 83 (296)
T COG0214 69 IEEIMDAVSIPVMAK 83 (296)
T ss_pred HHHHHHHCCCCEEEE
T ss_conf 999997534200245
No 411
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=41.35 E-value=26 Score=15.50 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=18.2
Q ss_pred HHHHCCCCC-CCCCCCCCCCEEEEECCCCC
Q ss_conf 533024566-22111124421588668998
Q gi|254780268|r 332 IECRINAED-PENFIPNPGEITYFHAPGGL 360 (443)
Q Consensus 332 ie~Ri~aEd-p~~f~Ps~G~i~~~~~p~~~ 360 (443)
+-.|+++-. +++..+-+|-+++.....|+
T Consensus 430 vdlR~f~~~~~~~~~v~pGGLtRVal~~gs 459 (488)
T COG2308 430 VDLRPFALADRDGVQVMPGGLTRVALREGS 459 (488)
T ss_pred CCCEEEEEECCCCEEECCCCEEEEEECCCC
T ss_conf 452468997588649733613456633785
No 412
>PTZ00124 adenosine deaminase; Provisional
Probab=41.27 E-value=26 Score=15.49 Aligned_cols=16 Identities=0% Similarity=0.092 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHCCCC
Q ss_conf 6989999999870998
Q gi|254780268|r 61 LNIQQIVAACEVTGAD 76 (443)
Q Consensus 61 ldi~~ii~~a~~~~~d 76 (443)
+..+-++++|++++++
T Consensus 48 lrp~tl~eLA~~~~i~ 63 (362)
T PTZ00124 48 FSVDFFIDIIRKYNEQ 63 (362)
T ss_pred CCHHHHHHHHHHHCCC
T ss_conf 8999999999981989
No 413
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=41.09 E-value=26 Score=15.48 Aligned_cols=29 Identities=24% Similarity=0.364 Sum_probs=26.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 06866447099999999888809659998
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAV 31 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v 31 (443)
|+|.|.+-|.|+.++.+-++-+|.++++.
T Consensus 37 k~vgIiG~G~IG~~va~~l~~fg~~V~~~ 65 (176)
T pfam02826 37 KTVGIIGLGRIGRAVARRLKAFGMKVIAY 65 (176)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999896999999999999839812543
No 414
>PRK08609 hypothetical protein; Provisional
Probab=41.06 E-value=26 Score=15.47 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=28.5
Q ss_pred ECCCCCCCEECCCCCCCEEEEE-EECCCHHHHHHHHHHHHHH--CEECCCCC
Q ss_conf 7760238770777684338999-9559989999999987654--08826377
Q gi|254780268|r 365 DSASYQGYTVPSYYDSLIAKLI-VHGKNRKECMMRLNRALNE--IIIDGIKT 413 (443)
Q Consensus 365 Dt~~~~G~~i~~~yDsmlaKiI-~~g~~R~~Ai~~l~~aL~~--~~I~Gv~T 413 (443)
|+...-.+++=..+|=.+|-+= ....++++..+|+.+|++. +.|-|=+|
T Consensus 416 dG~lD~~d~~L~~lD~vvasvHs~~~~~~~~~t~r~~~Ai~np~v~ii~Hpt 467 (570)
T PRK08609 416 DGSLDYDDEVLAELDYVIAAIHSSFSQSEEEIMKRLETACRNPYVRLIAHPT 467 (570)
T ss_pred CCCCCCCHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 8887888899985999999813445798899999999997189987884887
No 415
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=40.97 E-value=26 Score=15.46 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=9.5
Q ss_pred CCCCCHHHHHHHCC
Q ss_conf 58865316875106
Q gi|254780268|r 429 EGNYDIHWLENKYL 442 (443)
Q Consensus 429 ~g~~~T~fi~~~~~ 442 (443)
.|+|-|..+++.|+
T Consensus 461 tG~Ypt~~~~~~y~ 474 (503)
T PRK09246 461 DGEYVTGDVDQEYL 474 (503)
T ss_pred CCCCCCCCCCHHHH
T ss_conf 78166999799999
No 416
>PRK13118 consensus
Probab=40.96 E-value=26 Score=15.46 Aligned_cols=216 Identities=13% Similarity=0.194 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHH---C--CCCEEECCCC
Q ss_conf 99999999888809659998---58557718776758579991899853000698999999987---0--9989945853
Q gi|254780268|r 12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEV---T--GADAIHPGYG 83 (443)
Q Consensus 12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~---~--~~daihPGyG 83 (443)
|.-.++++++-+-|...+=+ +|||=..-+-.+.|.+-. |. +=.+.+.+++..++ . ++--|.=||-
T Consensus 31 e~t~~~~~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rA-L~------~G~~~~~~~~~v~~~r~~~~~~PivlM~Y~ 103 (269)
T PRK13118 31 EASVPLLHGLVAAGADVIELGMPFSDPMADGPAIQLASERA-LA------AGQGLADVLQMVREFRQGDQTTPVVLMGYL 103 (269)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 99999999999769999997898888666579999999999-96------798688999999998643899998997400
Q ss_pred --HHHCC-HHHHHHHHHCCCE-EECC--CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHHH-CCCCHHH-
Q ss_conf --13109-7666889845921-6268--98999872189988776642244332433345579998-7320-0330122-
Q gi|254780268|r 84 --FLSEN-AKFAEILEDHHIK-FIGP--SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAM-PIAK-EIGFPVL- 154 (443)
Q Consensus 84 --fLsEn-~~fa~~~e~~Gi~-fIGP--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~-~~a~-~iGyPvi- 154 (443)
++.-. ..|++.|.++|+. +|=| +++ .-...+..+++.|+..++.....+.++.+ .+++ .-||=..
T Consensus 104 N~i~~~G~e~F~~~~~~~GvdGvIipDLP~e------e~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFiY~v 177 (269)
T PRK13118 104 NPIEIYGYERFVAQAKEAGVDGLILVDLPPE------EADELRAPAQAHGLDFIRLTSPTTSDERLPRVLEHASGYLYYV 177 (269)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEECCCCCHH------HHHHHHHHHHHCCCCHHEEECCCCCHHHHHHHHHCCCCCEEEE
T ss_conf 0787863999999999859974645899978------9999999999759846403698987899999984378838998
Q ss_pred -HHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC-EEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf -000234578216888750668999998754321258998168844342011033-157773478702365665421135
Q gi|254780268|r 155 -VKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE-VQIFGDGMGNAIHFGERDCSVQRR 232 (443)
Q Consensus 155 -iKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE-vqVl~D~~g~~v~l~erdCSiQrr 232 (443)
.+.+- |.+ -...+++.+.++..++.. +-++.+-==|..+.|+. +.=.+| .+.+|..= +
T Consensus 178 s~~GvT-----G~~-~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~~~~v~~~aD----GvIVGSa~--V--- 237 (269)
T PRK13118 178 SLAGVT-----GAA-ALDTEHVEEAVARLRRHT-----DLPVVVGFGIRDAESAAAIARLAD----GVVVGSAL--V--- 237 (269)
T ss_pred ECCCCC-----CCC-CCCHHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHCCCC----EEEECHHH--H---
T ss_conf 545667-----877-667198999999999625-----898178716799999999980099----99985899--9---
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 622554034455889999999999999886515
Q gi|254780268|r 233 NQKIWEEAHSPVISAQDRTEIGETCVKAMKKID 265 (443)
Q Consensus 233 ~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g 265 (443)
|.|+++.. +++..+++.+....+-++++
T Consensus 238 --k~i~~~~~---~~~~~~~~~~~~k~lk~al~ 265 (269)
T PRK13118 238 --DAIAEAKD---VDQAVERVLALLAELRQALD 265 (269)
T ss_pred --HHHHHCCC---HHHHHHHHHHHHHHHHHHHH
T ss_conf --99985678---26799999999999999998
No 417
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=40.90 E-value=16 Score=17.00 Aligned_cols=84 Identities=21% Similarity=0.380 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC--CCHH---HHHHHHHCCCCHHHHHCCCCC
Q ss_conf 09766688984592162689899987218998877664224433243334--5579---998732003301220002345
Q gi|254780268|r 87 ENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE--VYPH---TAMPIAKEIGFPVLVKASAGG 161 (443)
Q Consensus 87 En~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~--~~~~---ea~~~a~~iGyPviiKp~~gG 161 (443)
.|.-|+-+ +++|-.+ -|+.+.|+.|-+..+.-+- .+-+.+.++.. +..+ +....+++.||--+.+.+.
T Consensus 75 ~~~CFa~A-~~ag~vY-Ept~eqi~~Ml~~lk~e~p---~~~~aIq~tGGEPTvr~DL~eiv~~a~e~g~~hVqinTn-- 147 (475)
T COG1964 75 NNECFAYA-EEAGYIY-EPTLEQIREMLRNLKKEHP---VGANAVQFTGGEPTLRDDLIEIIKIAREEGYDHVQLNTN-- 147 (475)
T ss_pred CCCCCCCH-HHCCCCC-CCCHHHHHHHHHHHHHCCC---CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCC--
T ss_conf 78675764-3268614-7779999999999985389---998326722898664355899999776568618998257--
Q ss_pred CCCEEEEEEECHHHHHHHHH
Q ss_conf 78216888750668999998
Q gi|254780268|r 162 GGRGMRIAYSENDLSEAIDQ 181 (443)
Q Consensus 162 GG~Gi~vv~~~~el~~a~~~ 181 (443)
|++.++++ ++...++.
T Consensus 148 ---GirlA~~~-~~~~~l~~ 163 (475)
T COG1964 148 ---GIRLAFDP-EYVKKLRE 163 (475)
T ss_pred ---CEEECCCH-HHHHHHHH
T ss_conf ---50201377-89988986
No 418
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=40.85 E-value=26 Score=15.45 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=53.9
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE-EC-C
Q ss_conf 86644-709999999988880965999858557718776758579991899853000698999999987099899-45-8
Q gi|254780268|r 5 ILIAN-RGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI-HP-G 81 (443)
Q Consensus 5 iLian-rGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai-hP-G 81 (443)
|||-+ .|-|.-.+.+.+.+.|.+++++... . . -..|.+.+.++.++.++|.| |- +
T Consensus 1 ILVtG~~GfiGs~l~~~L~~~g~~v~~~~r~----~-----~-------------D~~d~~~l~~~~~~~~pd~VihlAa 58 (284)
T pfam04321 1 ILVTGANGQLGRELTRLLAERGVEVVALDRP----E-----L-------------DLTDPEAVAALVREARPDVVVNAAA 58 (284)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEECCC----C-----C-------------CCCCHHHHHHHHHHCCCCEEEECCC
T ss_conf 6996489989999999998689989995486----2-----5-------------7889999999998649979997241
Q ss_pred ---CCHHHCCH------------HHHHHHHHCCCEEECCCHHHH
Q ss_conf ---53131097------------666889845921626898999
Q gi|254780268|r 82 ---YGFLSENA------------KFAEILEDHHIKFIGPSSEHI 110 (443)
Q Consensus 82 ---yGfLsEn~------------~fa~~~e~~Gi~fIGPs~~ai 110 (443)
.....+++ .+++.|.+.|+.||-.|...+
T Consensus 59 ~~~~~~~~~~~~~~~~~Nv~~t~~l~~~~~~~~~~~i~~Ss~~V 102 (284)
T pfam04321 59 YTAVDKAESEPELAYAVNALGPGNLAEACAARGAPLIHISTDYV 102 (284)
T ss_pred CCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 35556777488889987599999999998744985798417530
No 419
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=40.84 E-value=26 Score=15.45 Aligned_cols=152 Identities=22% Similarity=0.252 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHCCCEEEEECC--CHHHCCCCHHHCCEEEE-CCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHC
Q ss_conf 09999999988880965999858--55771877675857999-1899853000698999999987099899458531310
Q gi|254780268|r 11 GEIALRILRACKELGIPTVAVHS--TADSGAMHVRLADESVC-IGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSE 87 (443)
Q Consensus 11 Geia~riira~~elGi~tv~v~s--~~D~~a~~~~~ADe~~~-i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsE 87 (443)
=++|...|+++++-|...|=..+ .+|..++.. ++..+ +.......| +-.+. ++.... +..
T Consensus 29 le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~---~~~~~~i~~~~~~~s---lyel~---e~~~~p--------~e~ 91 (347)
T COG2089 29 LERAKELIDAAKEAGADAVKFQTFYTPDIMTLES---KNVPFKIKTLWDKVS---LYELY---EEAETP--------LEW 91 (347)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC---CCCCCCCCCCCCCCC---HHHHH---HHHCCC--------HHH
T ss_conf 8999999999997386655532035631004033---577655555656663---99999---984499--------999
Q ss_pred CHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEE
Q ss_conf 9766688984592162689899987218998877664224433243-334557999873200330122000234578216
Q gi|254780268|r 88 NAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPG-SGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGM 166 (443)
Q Consensus 88 n~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~-~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi 166 (443)
-+++-+.|++.|+.|+ .||-... +-.++++.++|-..= +...+.-.+++...+.+-|+++-. ||
T Consensus 92 ~~~Lke~a~~~Gi~~~-SSPfd~~-------svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlST-------Gm 156 (347)
T COG2089 92 HAQLKEYARKRGIIFF-SSPFDLT-------AVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILST-------GM 156 (347)
T ss_pred HHHHHHHHHHCCEEEE-ECCCCHH-------HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEC-------CC
T ss_conf 9999999987293898-1678878-------8999985699837734743357589999996399779974-------66
Q ss_pred EEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf 888750668999998754321258998168844342
Q gi|254780268|r 167 RIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLE 202 (443)
Q Consensus 167 ~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~ 202 (443)
.+.+|+.+++..++.+. +..+.+-+.+.
T Consensus 157 ---a~~~ei~~av~~~r~~g-----~~~i~LLhC~s 184 (347)
T COG2089 157 ---ATIEEIEEAVAILRENG-----NPDIALLHCTS 184 (347)
T ss_pred ---CCHHHHHHHHHHHHHCC-----CCCEEEEEECC
T ss_conf ---40777999999999669-----98769998357
No 420
>pfam04748 Polysacc_deac_2 Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).
Probab=40.71 E-value=26 Score=15.44 Aligned_cols=110 Identities=17% Similarity=0.183 Sum_probs=55.0
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCC--EE--ECCCCHHHCCH
Q ss_conf 999999888809659998585577187767585799918998530006989999999870998--99--45853131097
Q gi|254780268|r 14 ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGAD--AI--HPGYGFLSENA 89 (443)
Q Consensus 14 a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~d--ai--hPGyGfLsEn~ 89 (443)
+.+.++.+++.|-+++.--.. +.... ...-+.. |... .+.-.+...++.+...-.. +| |.|=.|-+...
T Consensus 34 ~~~~a~~a~~~g~EvllhlPM-e~~~~-~~~gp~~--L~~~---~~~~~i~~~l~~~l~~~p~avGvnNhmGS~~t~~~~ 106 (213)
T pfam04748 34 AAELAEAARAAGHEVLLHLPM-EPLGY-KDPGPGT--LTVG---MSAEEIEKRLEAALSRVPYAVGVNNHMGSRFTADRA 106 (213)
T ss_pred HHHHHHHHHHCCCEEEEECCC-CCCCC-CCCCCCC--CCCC---CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHH
T ss_conf 699999999879949997456-63468-9999775--8889---999999999999998788848995466755416999
Q ss_pred H---HHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 6---6688984592162689899987218998877664224433243334
Q gi|254780268|r 90 K---FAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE 136 (443)
Q Consensus 90 ~---fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~ 136 (443)
. +.+.+.+.|+-|+-... ..+..+.+++.+.|||+..-...
T Consensus 107 ~m~~vl~~l~~~gl~fvDS~T------t~~S~a~~~A~~~gvp~~~rdvf 150 (213)
T pfam04748 107 AMRWVMEELKKRGLFFVDSRT------SGRSVAPKLAKELGVPAAKRDVF 150 (213)
T ss_pred HHHHHHHHHHHCCCEEEECCC------CCCCHHHHHHHHCCCCEEEEEEE
T ss_conf 999999999877988991477------76658999999839986761031
No 421
>PRK05569 flavodoxin; Provisional
Probab=40.68 E-value=26 Score=15.43 Aligned_cols=101 Identities=22% Similarity=0.324 Sum_probs=56.0
Q ss_pred CEEEEEE------CCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHC---CHHHHHHHHH-
Q ss_conf 7068664------47099999999888809659998585577187767585799918998530006---9899999998-
Q gi|254780268|r 2 ISKILIA------NRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYL---NIQQIVAACE- 71 (443)
Q Consensus 2 ~~~iLia------nrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYl---di~~ii~~a~- 71 (443)
|+||+|. |--.+|--|...+++-|+++.+.+.. +....++..+| ++.+|.++....-+ .+..+++-.+
T Consensus 1 M~Kv~IvY~S~~GnTe~mA~~IaeG~~~~G~ev~v~~~~-~~~~~di~~~d-~i~~GspT~~~~~~~~~~~~~~l~~l~~ 78 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVA-DAKVEDVLEAD-AVAFGSPSMDNNNIEQEEMAPFLDQFKL 78 (141)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC-CCCHHHHHHCC-EEEEECCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 974999998996089999999999999769819999842-39988997189-0599054558887771769999999853
Q ss_pred ---HCCCCEEECCCCHHHCC--HHHHHHHHHCCCEEEC
Q ss_conf ---70998994585313109--7666889845921626
Q gi|254780268|r 72 ---VTGADAIHPGYGFLSEN--AKFAEILEDHHIKFIG 104 (443)
Q Consensus 72 ---~~~~daihPGyGfLsEn--~~fa~~~e~~Gi~fIG 104 (443)
+.+.-+++..||.-|-. ..+.+.+++.|+.+++
T Consensus 79 ~~~~~K~~a~FGSyGW~~Ge~~~~~~~~l~~~g~~vv~ 116 (141)
T PRK05569 79 TPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIG 116 (141)
T ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf 45589889999667788646999999999978984824
No 422
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type; InterPro: IPR012846 Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this entry also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding, 0009082 branched chain family amino acid biosynthetic process.
Probab=40.62 E-value=26 Score=15.43 Aligned_cols=334 Identities=18% Similarity=0.209 Sum_probs=157.4
Q ss_pred HHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHH
Q ss_conf 99998888096599985855771877675857999189985300069899999998709989945853131097666889
Q gi|254780268|r 16 RILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEIL 95 (443)
Q Consensus 16 riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~ 95 (443)
=+++++++.|+++|=-|.=-.-..- =|..|...- -..|..|--+|.==|+|- +| -+||+=
T Consensus 6 ~~~~sL~~~gV~~vFGYPGGA~Lpi----YD~Ly~fe~---------~s~~~HIL~RHEQgA~Ha-----AD--GYARAs 65 (593)
T TIGR00118 6 AIVESLKDEGVETVFGYPGGAILPI----YDALYRFET---------DSGIEHILVRHEQGAVHA-----AD--GYARAS 65 (593)
T ss_pred HHHHHHHHCCCCEEECCCCCCHHHH----HHHHHCCCC---------CCCCEEECCCHHHHHHHH-----HC--CCEECC
T ss_conf 9999998679869974898643567----766503012---------688327216725576454-----23--440015
Q ss_pred HHCCCEEE--CCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC-CCCH---HHHHHHHHCCC--CHHHHHCCCCCCCCEEE
Q ss_conf 84592162--68989998721899887766422443324333-4557---99987320033--01220002345782168
Q gi|254780268|r 96 EDHHIKFI--GPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG-EVYP---HTAMPIAKEIG--FPVLVKASAGGGGRGMR 167 (443)
Q Consensus 96 e~~Gi~fI--GPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~-~~~~---~ea~~~a~~iG--yPviiKp~~gGGG~Gi~ 167 (443)
-+-|+.|. ||.+- |=+.==..|--=.+|.+-.+. +.+. .||-+-++=+| -|+ +|=++
T Consensus 66 GkvGVv~~TSGPGAT------N~VTGiAtAy~DS~P~Vv~tGQV~t~~IG~DAFQE~D~~GIt~Pi-tKHsf-------- 130 (593)
T TIGR00118 66 GKVGVVLATSGPGAT------NLVTGIATAYMDSVPLVVFTGQVPTSLIGSDAFQEADILGITMPI-TKHSF-------- 130 (593)
T ss_pred CCEEEEEEECCCCCH------HHHHHHHHHHHCCCCEEEECCCHHHHHCCCCCCHHHHHCCCCCCE-EEEEE--------
T ss_conf 830289860798723------356567775425765377517600010137500000111346665-67530--------
Q ss_pred EEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCC--CCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 88750668999998754321258998168844342011033157773478--7023656654211356225540344558
Q gi|254780268|r 168 IAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMG--NAIHFGERDCSVQRRNQKIWEEAHSPVI 245 (443)
Q Consensus 168 vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g--~~v~l~erdCSiQrr~qkiiEeaPap~l 245 (443)
.|++.+||...++.|+.-|.+-- -++|+|+ | ||-|.-+-+.-.+. .-+.|..+ ++++ .+.|.-
T Consensus 131 ~V~~~edlp~~~~~AF~IA~TGR-PGPVlvD--l--PKDv~~~~~~~~~~~P~~v~LPgY-------~P~~---~Gh~~Q 195 (593)
T TIGR00118 131 QVKSAEDLPRIIKEAFHIATTGR-PGPVLVD--L--PKDVTTAEIEFPYDDPEKVNLPGY-------KPTV---EGHPLQ 195 (593)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCC-CCCEEEE--C--CCCCCCHHHCCCCCCCCEEECCCC-------CCCC---CCCCCH
T ss_conf 02587899999998776432766-6882785--8--842243333267888860007887-------8888---988314
Q ss_pred CHHHHHHHHHHHHHHHHHHC---CCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 89999999999999886515---434102458972883499822765433201678863256201123222102222211
Q gi|254780268|r 246 SAQDRTEIGETCVKAMKKID---YRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRLSVQQ 322 (443)
Q Consensus 246 ~~~~~~~i~~~A~~~~~~~g---~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l~~~~ 322 (443)
++-+.+.|..++.-+.++=+ |.|.|-+. ..+..==+.|..=|+|. |||.-.-| .|. +-+
T Consensus 196 defv~qsI~kA~~li~~AkkPVilvGGGvin--~a~as~~L~elae~~~~--PV~tTLmG-----------lG~---FP~ 257 (593)
T TIGR00118 196 DEFVMQSIKKAAELIEKAKKPVILVGGGVIN--IAGASEELKELAERLQI--PVTTTLMG-----------LGS---FPE 257 (593)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCHHHH--CCCCHHHHHHHHHHCCC--CCEECCCC-----------CCC---CCC
T ss_conf 5789999999999999726977986413542--05540799999854077--60010156-----------788---784
Q ss_pred CCCC------CCHHHHHHHCCCC--CC-----CCC-CCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCC-EEEEEE
Q ss_conf 3333------2012453302456--62-----211-1124421588668998446777602387707776843-389999
Q gi|254780268|r 323 KDIT------FSGHAIECRINAE--DP-----ENF-IPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSL-IAKLIV 387 (443)
Q Consensus 323 ~~i~------~~g~aie~Ri~aE--dp-----~~f-~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsm-laKiI~ 387 (443)
+++. -+|... |=..-. |- ..| =-.+|.|..|.+-.- | -..-..|..|...=||- |+|.+.
T Consensus 258 ~Hp~~LGMlGMHGt~~-AN~Av~EcDllIAvG~RFdDRvTGnl~~FAp~Ak---r-aaaeGrGGiiHiDIDPaeIgK~v~ 332 (593)
T TIGR00118 258 DHPLSLGMLGMHGTKT-ANLAVHECDLLIAVGARFDDRVTGNLAKFAPNAK---R-AAAEGRGGIIHIDIDPAEIGKNVR 332 (593)
T ss_pred CCHHHHCCCCCHHHHH-HHHHHHHCCEEEEEEEEECCCCCCCHHHHCHHHH---H-HHHCCCCCEEEEEECCCCCCCCCC
T ss_conf 6835503567657888-7325420532145300005663487767231656---7-541478736999853765577114
Q ss_pred EC----CCHHHHHHHHHHHHHHC-EECCCCCCHHHHHHHH
Q ss_conf 55----99899999999876540-8826377888999896
Q gi|254780268|r 388 HG----KNRKECMMRLNRALNEI-IIDGIKTTIPLFQKLI 422 (443)
Q Consensus 388 ~g----~~R~~Ai~~l~~aL~~~-~I~Gv~TN~~~l~~il 422 (443)
.. -|=...|++|...|.+. ...--++...|+.+|=
T Consensus 333 ~diPiVGDAr~VL~~ll~~~~~~~~~~~~~~~~~W~~~i~ 372 (593)
T TIGR00118 333 VDIPIVGDARNVLEELLKKLEKEKALKERSEEQAWLEQIN 372 (593)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 6401036758999999999876303567224889999999
No 423
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=40.59 E-value=27 Score=15.42 Aligned_cols=74 Identities=23% Similarity=0.266 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCH---HHHHHHHHH-CCCCCCCCCCC
Q ss_conf 69899999998709989945853131097666889845921626898999872189---988776642-24433243334
Q gi|254780268|r 61 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDK---ITAKKTAQQ-LGIPVVPGSGE 136 (443)
Q Consensus 61 ldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK---~~~k~~a~~-~GVP~~p~~~~ 136 (443)
..+.+++++|.+.+...|.- -++.+...+|.+ ...+.++++ .+||++=...-
T Consensus 29 e~~~Avi~AAee~~sPvIlq------------------------~s~g~~~~~g~~~l~~~~~~a~~~~~~VPValHLDH 84 (347)
T PRK09196 29 EQVQAIMEAADETDSPVILQ------------------------ASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDH 84 (347)
T ss_pred HHHHHHHHHHHHHCCCEEEE------------------------CCHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 99999999999968998999------------------------873177665879999999999985689988997478
Q ss_pred CCHHHHHHHHHCCCCH-HHHHCC
Q ss_conf 5579998732003301-220002
Q gi|254780268|r 137 VYPHTAMPIAKEIGFP-VLVKAS 158 (443)
Q Consensus 137 ~~~~ea~~~a~~iGyP-viiKp~ 158 (443)
....+....+-+.||- ||+-.|
T Consensus 85 g~~~e~i~~ai~~GFtSVMiDgS 107 (347)
T PRK09196 85 GNSPATCQRAIQLGFTSVMMDGS 107 (347)
T ss_pred CCCHHHHHHHHHCCCCEEEEECC
T ss_conf 89999999998648983897365
No 424
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase homolog; InterPro: IPR012815 This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbour-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (IPR012812 from INTERPRO). Members of this family are likely to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.; GO: 0050531 mannosyl-3-phosphoglycerate phosphatase activity, 0005737 cytoplasm.
Probab=40.43 E-value=18 Score=16.57 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHCCCEEEEECCCHHHCCCCHHH
Q ss_conf 99999998888096599985855771877675
Q gi|254780268|r 13 IALRILRACKELGIPTVAVHSTADSGAMHVRL 44 (443)
Q Consensus 13 ia~riira~~elGi~tv~v~s~~D~~a~~~~~ 44 (443)
.|.+.+|.++|.||-.|..-|.........+.
T Consensus 20 PA~~~l~~L~e~~iPvI~CtSKTAAEv~~lr~ 51 (224)
T TIGR02463 20 PAAPWLTRLQEAGIPVILCTSKTAAEVEALRK 51 (224)
T ss_pred HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
T ss_conf 77999999997589764258730789999999
No 425
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=40.43 E-value=27 Score=15.41 Aligned_cols=34 Identities=24% Similarity=0.477 Sum_probs=27.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEE-----EEECCCHHHC
Q ss_conf 6866447099999999888809659-----9985855771
Q gi|254780268|r 4 KILIANRGEIALRILRACKELGIPT-----VAVHSTADSG 38 (443)
Q Consensus 4 ~iLianrGeia~riira~~elGi~t-----v~v~s~~D~~ 38 (443)
|||+.+-|-|.|.++|.+--||+.+ |.| +|.|+.
T Consensus 1 kvlvVGAGgIGCEllKnlal~G~~~~~~G~i~v-~D~D~I 39 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITV-TDMDNI 39 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEE-EECCCE
T ss_conf 989993776418999999983878689880899-708847
No 426
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases; InterPro: IPR004507 This family contains flavoproteins, which are aromatic acid decarboxylases. An example is the Saccharomyces cerevisiae gene, PAD1 that encodes phenylacrylic acid decarboxylase. Mutations of this gene are viable and confer resistance to cinnamic acid. ; GO: 0016831 carboxy-lyase activity.
Probab=40.42 E-value=27 Score=15.41 Aligned_cols=29 Identities=34% Similarity=0.434 Sum_probs=23.6
Q ss_pred CCHH-HHHHHHHHHHCCCEEEEECCCHHHC
Q ss_conf 7099-9999998888096599985855771
Q gi|254780268|r 10 RGEI-ALRILRACKELGIPTVAVHSTADSG 38 (443)
Q Consensus 10 rGei-a~riira~~elGi~tv~v~s~~D~~ 38 (443)
.|-| +.|+++.+|++|.|+-+|-|+....
T Consensus 10 sGvI~G~RLL~~Lk~~GvE~~LviS~~A~~ 39 (181)
T TIGR00421 10 SGVIYGIRLLEVLKELGVEVHLVISKWAKK 39 (181)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECHHHHH
T ss_conf 489999999999986793687863558999
No 427
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=40.35 E-value=27 Score=15.40 Aligned_cols=13 Identities=23% Similarity=0.509 Sum_probs=8.1
Q ss_pred EEEECHHHHHHHH
Q ss_conf 8875066899999
Q gi|254780268|r 168 IAYSENDLSEAID 180 (443)
Q Consensus 168 vv~~~~el~~a~~ 180 (443)
.+++++|..++++
T Consensus 147 LI~~~edv~~aL~ 159 (174)
T pfam04309 147 LIRTEEEVREALK 159 (174)
T ss_pred CCCCHHHHHHHHH
T ss_conf 8388999999998
No 428
>PRK06740 histidinol-phosphatase; Validated
Probab=40.34 E-value=27 Score=15.40 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=11.5
Q ss_pred HHHHHHHHCCCCHHHHHCCCCCCCCE
Q ss_conf 99987320033012200023457821
Q gi|254780268|r 140 HTAMPIAKEIGFPVLVKASAGGGGRG 165 (443)
Q Consensus 140 ~ea~~~a~~iGyPviiKp~~gGGG~G 165 (443)
++...+.+...|=.+|=+++=.+|=|
T Consensus 156 ~~l~~lL~~YpfDYvIGSVHFl~gWg 181 (338)
T PRK06740 156 QELQSLLALGDFDYVIGSVHFLNGWG 181 (338)
T ss_pred HHHHHHHHCCCCCEEEEEEEEECCCC
T ss_conf 99999974499755998888607878
No 429
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=40.34 E-value=27 Score=15.40 Aligned_cols=31 Identities=26% Similarity=0.510 Sum_probs=23.6
Q ss_pred HHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCC
Q ss_conf 984592162689899987218998877664224433
Q gi|254780268|r 95 LEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPV 130 (443)
Q Consensus 95 ~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~ 130 (443)
+.-.|+.++||+. .|....+|.++-+++||-
T Consensus 181 kiPkGvlLvGpPG-----TGKTLLAkAvAgEA~VPF 211 (596)
T COG0465 181 KIPKGVLLVGPPG-----TGKTLLAKAVAGEAGVPF 211 (596)
T ss_pred CCCCCEEEECCCC-----CCCHHHHHHHHCCCCCCC
T ss_conf 3456526855999-----872789999845468983
No 430
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=40.33 E-value=27 Score=15.40 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=30.6
Q ss_pred EEEEECCCHH---HHHHHHHHHH-CCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE
Q ss_conf 6866447099---9999998888-0965999858557718776758579991899853000698999999987099899
Q gi|254780268|r 4 KILIANRGEI---ALRILRACKE-LGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI 78 (443)
Q Consensus 4 ~iLianrGei---a~riira~~e-lGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai 78 (443)
||++.++|-- |.-+-...++ +++.+.++++.+-...... .-++...|.-....++ .++-..++.|++.|+..|
T Consensus 1 rI~~~G~GsS~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lvI~iS~SG~t-~e~i~a~~~a~~~g~~~i 77 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPL-LDEDTLVIAISQSGET-ADTLAALRLAKEKGAKTV 77 (126)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHCCCCEEEECHHHHHCCCCC-CCCCCEEEEECCCCCC-CCHHHHHHHHHHCCCCEE
T ss_conf 9999996179999999999999972998899860675544788-9998599998689798-007889999998299489
No 431
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=40.30 E-value=24 Score=15.78 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=37.9
Q ss_pred HHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHC
Q ss_conf 987218998877664224433243334557999873200330122000
Q gi|254780268|r 110 IKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKA 157 (443)
Q Consensus 110 i~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp 157 (443)
+-..||+.....+|-+.|-.+.--.+....++...+|++.+.|++--.
T Consensus 117 LlIVGnR~~iq~lAL~~~~AVLvTGGF~~s~evi~lAne~~lPvlsts 164 (432)
T COG4109 117 LLIVGNREDIQLLALENGNAVLVTGGFDVSDEVIKLANEKGLPVLSTS 164 (432)
T ss_pred EEEEECHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEC
T ss_conf 699946899999998649859995798865889976401488448704
No 432
>pfam01380 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Presumably the SIS domains bind to the end-product of the pathway.
Probab=40.20 E-value=27 Score=15.38 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=42.0
Q ss_pred CEEEEEECCCH---HHHHHHHHHHHCCCEEEEECCCHHHCCC---CHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCC
Q ss_conf 70686644709---9999999888809659998585577187---76758579991899853000698999999987099
Q gi|254780268|r 2 ISKILIANRGE---IALRILRACKELGIPTVAVHSTADSGAM---HVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGA 75 (443)
Q Consensus 2 ~~~iLianrGe---ia~riira~~elGi~tv~v~s~~D~~a~---~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~ 75 (443)
-+||++.+.|- +|.-.-+.+.++|...+.++...+.... ....-|-.+.+. ...+ -.+.-..++.|++.|+
T Consensus 5 a~rI~~~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~iS--~sG~-t~~~~~~~~~a~~~g~ 81 (131)
T pfam01380 5 AKRIYVIGAGTSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAIS--QSGE-TRDLLEAAKLLKARGA 81 (131)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCCCCEEEEEC--CCCC-CHHHHHHHHHHHHCCC
T ss_conf 898999993269999999999999868987786365886606756799999999954--8986-5768987899998499
Q ss_pred CEE
Q ss_conf 899
Q gi|254780268|r 76 DAI 78 (443)
Q Consensus 76 dai 78 (443)
..|
T Consensus 82 ~~i 84 (131)
T pfam01380 82 KII 84 (131)
T ss_pred EEE
T ss_conf 699
No 433
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=40.20 E-value=27 Score=15.38 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=20.8
Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 21688875066899999875432125899816884
Q gi|254780268|r 164 RGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 164 ~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
|-...+.+++++.+.+++|.+.+.. +.++++++
T Consensus 126 k~~~~v~~~~~~~~~l~~A~~~A~~--~~GPv~l~ 158 (578)
T PRK06546 126 HYCEMVSTPEQAPRVLHSAIQHAVA--GGGVSVVT 158 (578)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHC--CCCCEEEE
T ss_conf 6536630334159999999999747--99987997
No 434
>PRK06264 cbiC precorrin-8X methylmutase; Validated
Probab=40.19 E-value=13 Score=17.62 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCHHHCC------------CCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEE
Q ss_conf 9999999988880965999858557718------------7767585799918998530006989999999870998994
Q gi|254780268|r 12 EIALRILRACKELGIPTVAVHSTADSGA------------MHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH 79 (443)
Q Consensus 12 eia~riira~~elGi~tv~v~s~~D~~a------------~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daih 79 (443)
+|..|+|.|+-+..|.-...+++..-.+ +++.|.--. |. .....+|++-+.+.+.|++.+..--.
T Consensus 40 ~Vv~RvIHatgD~~~~~~l~fs~~av~~g~~AL~~g~~IvtDv~MV~aG--I~-~~~v~C~i~d~~v~~~a~~~g~TRs~ 116 (210)
T PRK06264 40 GIIERVVHATADPEYAKLVVFSNNPIETGLDALNDKKPIITDISMVKAG--IR-YNDVLCTISEKEVFELAKKEQITRAV 116 (210)
T ss_pred HHHHHHHEECCCHHHHHHEEECHHHHHHHHHHHHCCCCEEECCHHHHHC--CC-CCCEEEECCCCCHHHHHHCCCCCHHH
T ss_conf 8899860204664039674578689999999998699799836898803--77-57468868894287785265977999
Q ss_pred CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHH--HHCCCCCCCCCCCCCHHHHHHHHHCCCCHHH-HH
Q ss_conf 58531310976668898459216268989998721899887766--4224433243334557999873200330122-00
Q gi|254780268|r 80 PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTA--QQLGIPVVPGSGEVYPHTAMPIAKEIGFPVL-VK 156 (443)
Q Consensus 80 PGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a--~~~GVP~~p~~~~~~~~ea~~~a~~iGyPvi-iK 156 (443)
- ....+..-...+|..||-.|.++..+-+-+.....- -=.|+| .| +....|.++...+.+.|.+ ++
T Consensus 117 a-------a~~~a~~~~~~aIvvIGNAPTAL~~lleli~~g~~~PaLVIG~P--VG--FVgA~ESKe~L~~~~iP~It~~ 185 (210)
T PRK06264 117 A-------SMRAAKELIDGGIVVIGNAPTALFEVIRLNKEEGITPKLVVGVP--VG--FVKAAESKEALRTTNIPSISTI 185 (210)
T ss_pred H-------HHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCCEEEECC--CC--CCCHHHHHHHHHHCCCCEEEEE
T ss_conf 9-------99999864799789967877999999999985499974688568--66--6677999999986899989971
Q ss_pred CCCCCCCCE
Q ss_conf 023457821
Q gi|254780268|r 157 ASAGGGGRG 165 (443)
Q Consensus 157 p~~gGGG~G 165 (443)
-..||+..-
T Consensus 186 GrkGGS~vA 194 (210)
T PRK06264 186 GPKGGTPVA 194 (210)
T ss_pred CCCCCHHHH
T ss_conf 698759999
No 435
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=40.18 E-value=20 Score=16.29 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHCC--CEEECCC-HHHHHHHHCHHHHHHHHHHCCCCC
Q ss_conf 0976668898459--2162689-899987218998877664224433
Q gi|254780268|r 87 ENAKFAEILEDHH--IKFIGPS-SEHIKIMGDKITAKKTAQQLGIPV 130 (443)
Q Consensus 87 En~~fa~~~e~~G--i~fIGPs-~~ai~~~gDK~~~k~~a~~~GVP~ 130 (443)
+.-+|.+.+.+.| |-|+|+- -.|=+.. ++.|+++|.+=
T Consensus 51 ~Ay~~v~~~~~~gg~iLFVGTKNkQA~~~i------~~~A~r~g~~Y 91 (227)
T TIGR01011 51 EAYNFVREVVANGGKILFVGTKNKQAKEII------KEEAERCGMFY 91 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEECHHHHHHHHH------HHHHHHCCCCE
T ss_conf 999999999981995888516588999999------99998748962
No 436
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=40.17 E-value=27 Score=15.38 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=26.8
Q ss_pred CCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCC
Q ss_conf 9216268989998721899887766422443324333455799987320033012200023457
Q gi|254780268|r 99 HIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGG 162 (443)
Q Consensus 99 Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGG 162 (443)
.+.+.|.+.. .|...-+++..+|.|.+........++ |--.+.||.++|+
T Consensus 93 dlVl~g~~s~------g~~~~~~lA~~L~~~~v~~v~~i~~~~--------~~~~~~R~~~~g~ 142 (181)
T cd01985 93 DLILAGATSI------GKQLAPRVAALLGVPQISDVTKLEIDG--------GDLTVTRPIYAGN 142 (181)
T ss_pred CEEEECCCHH------HCCHHHHHHHHHCCCCCCCEEEEEECC--------CEEEEEEEEECCC
T ss_conf 8999604102------225899999985997312379999809--------9699999940697
No 437
>PRK13133 consensus
Probab=40.07 E-value=27 Score=15.37 Aligned_cols=177 Identities=17% Similarity=0.220 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC---------CCCEEE
Q ss_conf 99999999888809659998---585577187767585799918998530006989999999870---------998994
Q gi|254780268|r 12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT---------GADAIH 79 (443)
Q Consensus 12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~---------~~daih 79 (443)
+.-.++++++.+.|..-+=+ ||||=..-+-.+.|.+.. |. +=.+.+.+++..++. ..--|+
T Consensus 29 ~~t~~~i~~l~~~GaDiiElGiPFSDP~ADGpvIQ~A~~rA-L~------~G~~~~~~~~~~~~~r~~~~~~~~~~Pivl 101 (267)
T PRK13133 29 GATLPVLEALQESGADIIELGIPYSDPIGDGPVIQNAAHTA-IR------NGVSVRSLLELVRKARNGEGCRKITVPILL 101 (267)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 99999999999759998997899888666689999999999-98------699899999999999730243466877871
Q ss_pred CCCC--HHHCC-HHHHHHHHHCCCE-EECC--CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHH-CCCC
Q ss_conf 5853--13109-7666889845921-6268--9899987218998877664224433243334557999-87320-0330
Q gi|254780268|r 80 PGYG--FLSEN-AKFAEILEDHHIK-FIGP--SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTA-MPIAK-EIGF 151 (443)
Q Consensus 80 PGyG--fLsEn-~~fa~~~e~~Gi~-fIGP--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea-~~~a~-~iGy 151 (443)
=||- ++.=. ..|.+.|.++|+. +|=| +++ .....+..+++.|+..++.....++++. ..+++ .-||
T Consensus 102 MtY~N~i~~yG~e~F~~~~~~aGvdGlIipDLP~e------E~~~~~~~~~~~gl~~I~lvaPtt~~eRi~~i~~~s~GF 175 (267)
T PRK13133 102 MGYCNPLIAYGGDCFLADAVKAGVDGLLIPDLPPE------EAIDFLERAKNFGLTVVFLISPVTPPERIEFIDSLSTDF 175 (267)
T ss_pred HHHHHHHHHHCHHHHHHHHHHCCCCEEECCCCCHH------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 56457999847799999999869878877899968------889999999846986024428999999999998427895
Q ss_pred HHH--HHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC
Q ss_conf 122--000234578216888750668999998754321258998168844342011033
Q gi|254780268|r 152 PVL--VKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE 208 (443)
Q Consensus 152 Pvi--iKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE 208 (443)
=.. ....-| .+-...-.-+..+.+.+++.++.+ +.+|.+-==|..+.|++
T Consensus 176 iY~vs~~GvTG--~~~~~~~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGI~~~e~~~ 227 (267)
T PRK13133 176 SYCLAVNATTG--TAKLSDAGTEAAVDEYLKRVRQHT-----KKKFVVGFGIKDRERVE 227 (267)
T ss_pred EEEEEEECCCC--CCCCCCCCHHHHHHHHHHHHHHCC-----CCCEEEECCCCCHHHHH
T ss_conf 79998001346--775555426789999999999718-----99879966879999999
No 438
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=40.00 E-value=27 Score=15.36 Aligned_cols=149 Identities=21% Similarity=0.265 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHCCCEEE---EECCCHHHCCCCHHHCC---EEEECCCCCCCCHHCCHHHHHHHH----HHCCCCE-
Q ss_conf 470999999998888096599---98585577187767585---799918998530006989999999----8709989-
Q gi|254780268|r 9 NRGEIALRILRACKELGIPTV---AVHSTADSGAMHVRLAD---ESVCIGPPSSKDSYLNIQQIVAAC----EVTGADA- 77 (443)
Q Consensus 9 nrGeia~riira~~elGi~tv---~v~s~~D~~a~~~~~AD---e~~~i~~~~~~~sYldi~~ii~~a----~~~~~da- 77 (443)
..++-.++.++++-++||+.| .+|-+.+..-...+.+. +-++|-...... ....+.+++.+ ++.|.|-
T Consensus 25 ~~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s~v~ReelFittKvw~~-~~~~~~~~~a~e~Sl~rLg~dyv 103 (280)
T COG0656 25 GDDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKESGVPREELFITTKVWPS-DLGYDETLKALEASLKRLGLDYV 103 (280)
T ss_pred CCCHHHHHHHHHHHHHCCCEEECHHHHCCHHHHHHHHHHCCCCHHHEEEEEECCCC-CCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 88635999999999707112733867569899999998539987784898622776-57832799999999999689842
Q ss_pred ----EE-CC---CCHHHCCHHHHHHHHHCC-CEEECCCHHHHHHHHCHHHHHHHHHHCCCC-C---CCCCCCCCHHHHHH
Q ss_conf ----94-58---531310976668898459-216268989998721899887766422443-3---24333455799987
Q gi|254780268|r 78 ----IH-PG---YGFLSENAKFAEILEDHH-IKFIGPSSEHIKIMGDKITAKKTAQQLGIP-V---VPGSGEVYPHTAMP 144 (443)
Q Consensus 78 ----ih-PG---yGfLsEn~~fa~~~e~~G-i~fIGPs~~ai~~~gDK~~~k~~a~~~GVP-~---~p~~~~~~~~ea~~ 144 (443)
|| |. |+-+.|--.--+.+.+.| +..||-|--..+.+ .+++...++. + +.........++++
T Consensus 104 DLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L------~~l~~~~~~~p~~NQIe~hp~~~q~el~~ 177 (280)
T COG0656 104 DLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHL------EELLSLAKVKPAVNQIEYHPYLRQPELLP 177 (280)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHH------HHHHHHCCCCCCEEEEEECCCCCCHHHHH
T ss_conf 288977888766767899999999999649824797747998999------99998469987548888267878499999
Q ss_pred HHHCCCCHHHHHCCCCCCCC
Q ss_conf 32003301220002345782
Q gi|254780268|r 145 IAKEIGFPVLVKASAGGGGR 164 (443)
Q Consensus 145 ~a~~iGyPviiKp~~gGGG~ 164 (443)
++++.|-+++-=..-+.|++
T Consensus 178 ~~~~~gI~v~AysPL~~g~~ 197 (280)
T COG0656 178 FCQRHGIAVEAYSPLAKGGK 197 (280)
T ss_pred HHHHCCCEEEEECCCCCCCC
T ss_conf 99987998999787223663
No 439
>TIGR00970 leuA_yeast 2-isopropylmalate synthase; InterPro: IPR005668 Alpha-isopropylmalate synthase (2.3.3.13 from EC) catalyses the first step in the biosynthesis of leucine, the condensation of acetyl-CoA and alpha- ketoisovalerate to form 2-isopropylmalate synthase. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.; GO: 0003852 2-isopropylmalate synthase activity, 0009098 leucine biosynthetic process.
Probab=39.93 E-value=17 Score=16.72 Aligned_cols=125 Identities=17% Similarity=0.190 Sum_probs=69.9
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCC----------HHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 999999888809659998585577187767585799918998530----------0069899999998709989945853
Q gi|254780268|r 14 ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKD----------SYLNIQQIVAACEVTGADAIHPGYG 83 (443)
Q Consensus 14 a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~----------sYldi~~ii~~a~~~~~daihPGyG 83 (443)
-.|-.+-+-.||++=|=| +=|=+.+++..+--+++--|+..+++ .-| |..-++++.=.+=-.||-
T Consensus 54 K~ryF~lLv~iGfKEIEV-gFPSASQTDFdFvR~~iE~~G~iPDDVtIq~LtqsRe~L-I~RT~eAl~GAk~A~vH~--- 128 (615)
T TIGR00970 54 KKRYFKLLVRIGFKEIEV-GFPSASQTDFDFVRELIEQGGLIPDDVTIQVLTQSREEL-IKRTVEALSGAKKATVHL--- 128 (615)
T ss_pred HHHHHHHHHHCCCEEEEE-CCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEE---
T ss_conf 999998873078568873-288876352689889761778888742277521788778-999999830686216754---
Q ss_pred HHHCCHHHHHHHHHCCCEEECCCHHHHHHH--HCHHHHHHHHHHCCCCCCCCCCCCC--------HHHHHHHHHCC
Q ss_conf 131097666889845921626898999872--1899887766422443324333455--------79998732003
Q gi|254780268|r 84 FLSENAKFAEILEDHHIKFIGPSSEHIKIM--GDKITAKKTAQQLGIPVVPGSGEVY--------PHTAMPIAKEI 149 (443)
Q Consensus 84 fLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~--gDK~~~k~~a~~~GVP~~p~~~~~~--------~~ea~~~a~~i 149 (443)
++|...-|-+.+=+ -...|++.++ |.|+..|.+-+.+.-+-..|....+ .+-|++.++-+
T Consensus 129 YnatS~lfRevVFr------~sr~E~~~~A~~g~K~vrk~tk~a~~~~~T~W~fEySPE~fsdTe~efA~evCeAV 198 (615)
T TIGR00970 129 YNATSDLFREVVFR------ASREEVLALAVEGSKLVRKLTKDAAKSKETRWSFEYSPESFSDTELEFAVEVCEAV 198 (615)
T ss_pred HHHCCHHHHHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHH
T ss_conf 01124256678640------57689999864278999999873341577645310067767888547899999987
No 440
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=39.82 E-value=27 Score=15.34 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=31.2
Q ss_pred CCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf 30122000234578216888750668999998754321258998168844342
Q gi|254780268|r 150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLE 202 (443)
Q Consensus 150 GyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~ 202 (443)
..|=..|-+.+-|..|. .|++.+||.++++.|.+. +++.+||=-++
T Consensus 128 ~~~d~~~lA~a~G~~~~-~v~~~~el~~al~~a~~~------~gP~lieV~vd 173 (178)
T cd02014 128 PNPDFAKIAEAMGIKGI-RVEDPDELEAALDEALAA------DGPVVIDVVTD 173 (178)
T ss_pred CCCCHHHHHHHCCCEEE-EECCHHHHHHHHHHHHHC------CCCEEEEEECC
T ss_conf 99988999997697079-978999999999999968------99799999808
No 441
>PRK10676 DNA-binding transcriptional regulator ModE; Provisional
Probab=39.79 E-value=27 Score=15.34 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=50.7
Q ss_pred HCCCEEECCC----HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEE
Q ss_conf 4592162689----899987218998877664224433243334557-99987320033012200023457821688875
Q gi|254780268|r 97 DHHIKFIGPS----SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYP-HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYS 171 (443)
Q Consensus 97 ~~Gi~fIGPs----~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~-~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~ 171 (443)
-.+-.|+||. -++|+.+|.= .+.++..|++-- .. +-....-+..+.|++.+...|-+|-|.++-..
T Consensus 11 ~~~~~~~g~~ri~LL~~I~~~gSI---s~Aak~~g~SYk------~AW~~i~~~n~~~~~plv~~~~GG~~Ggg~~lT~~ 81 (262)
T PRK10676 11 LQQKLFADPRRISLLKQIALSGSI---SQGAKDAGISYK------SAWDAINEMNQLSEHILVERATGGKGGGGAVLTRY 81 (262)
T ss_pred ECCEECCCCCHHHHHHHHHHHCCH---HHHHHHCCCCHH------HHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECHH
T ss_conf 899462696789999999874999---999998199699------99999999975467977997459999988687578
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 06689999987543
Q gi|254780268|r 172 ENDLSEAIDQARSE 185 (443)
Q Consensus 172 ~~el~~a~~~a~~e 185 (443)
-.++-+.|+...++
T Consensus 82 G~~li~~y~~l~~~ 95 (262)
T PRK10676 82 GQRLIQLYDLLAQI 95 (262)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 442
>TIGR03586 PseI pseudaminic acid synthase.
Probab=39.78 E-value=27 Score=15.34 Aligned_cols=140 Identities=18% Similarity=0.247 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHCCCEEEEECC-CHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHH
Q ss_conf 9999999988880965999858-557718776758579991899853000698999999987099899458531310976
Q gi|254780268|r 12 EIALRILRACKELGIPTVAVHS-TADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAK 90 (443)
Q Consensus 12 eia~riira~~elGi~tv~v~s-~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~ 90 (443)
++|.+.|+.|++-|...|=..+ .+|.........+ +.+.... .+-+.+.+.-++... | +....+
T Consensus 17 ~~Ak~LI~~A~~sGaDaVKFQ~~~~d~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~l----~----~e~~~~ 81 (327)
T TIGR03586 17 ERALAMIEAAAAAGADAIKLQTYTADTITLDSDRPD--FIIKGGL-----WDGRTLYELYQEAHT----P----WEWHKE 81 (327)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCHHHEECCCCCHH--HHCCCCC-----CCCEEHHHHHHHHHC----C----HHHHHH
T ss_conf 999999999999299999933606666035665465--4114787-----788089999998647----8----999999
Q ss_pred HHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEE
Q ss_conf 6688984592162689899987218998877664224433243-334557999873200330122000234578216888
Q gi|254780268|r 91 FAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPG-SGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIA 169 (443)
Q Consensus 91 fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~-~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv 169 (443)
+.+.|.+.||.|+- ++- |... =+++.+.|++...= +...+.-.+++...+.+-|+++= -||
T Consensus 82 L~~~~k~~gI~f~~-t~f------d~~s-~~~l~~l~~~~~KIaS~d~~n~~Li~~iak~~kpviiS-------tG~--- 143 (327)
T TIGR03586 82 LFERAKELGLTIFS-SPF------DETA-VDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMS-------TGI--- 143 (327)
T ss_pred HHHHHHHCCCEEEE-CCC------CHHH-HHHHHHCCCCEEEECCHHHCCHHHHHHHHCCCCCEEEE-------CCC---
T ss_conf 99999985997997-889------9799-99998707995998941536656999986648867996-------888---
Q ss_pred EECHHHHHHHHHHHH
Q ss_conf 750668999998754
Q gi|254780268|r 170 YSENDLSEAIDQARS 184 (443)
Q Consensus 170 ~~~~el~~a~~~a~~ 184 (443)
.+.+|+..+++....
T Consensus 144 s~~~EI~~av~~~~~ 158 (327)
T TIGR03586 144 ATLEEIEEAVEAARE 158 (327)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 754567888887765
No 443
>TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237 This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group..
Probab=39.75 E-value=19 Score=16.39 Aligned_cols=62 Identities=23% Similarity=0.255 Sum_probs=33.9
Q ss_pred HCHHHHHHHHHHCCCCC-CC-CCCCCCH-HHHHHHHHCCCCHHHHHCC--CCCC--CCEEEEE-EECHHHHHH
Q ss_conf 18998877664224433-24-3334557-9998732003301220002--3457--8216888-750668999
Q gi|254780268|r 114 GDKITAKKTAQQLGIPV-VP-GSGEVYP-HTAMPIAKEIGFPVLVKAS--AGGG--GRGMRIA-YSENDLSEA 178 (443)
Q Consensus 114 gDK~~~k~~a~~~GVP~-~p-~~~~~~~-~ea~~~a~~iGyPviiKp~--~gGG--G~Gi~vv-~~~~el~~a 178 (443)
=.|.++-++|+++|+.. +| |. .+| +-....+ ..+|-++|=++ .|.+ -.|-++- .+-|+|...
T Consensus 102 YQK~Rid~vCrelGlks~APLW~--~dPle~~~~~V-~e~F~v~iv~V~A~GLdeswLGrridke~Id~L~~l 171 (227)
T TIGR00289 102 YQKSRIDKVCRELGLKSIAPLWH--KDPLEYLLEEV-AEKFEVIIVSVSAEGLDESWLGRRIDKECIDDLKDL 171 (227)
T ss_pred HHHHHHHHHHHHHCCHHCCCCCC--CCHHHHHHHHH-HCCCEEEEEEEEEECCCCCCCCCEECHHHHHHHHHH
T ss_conf 12335778877714100276013--48179999986-233608999998411782236620066678988632
No 444
>PRK08322 acetolactate synthase; Reviewed
Probab=39.41 E-value=28 Score=15.30 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=14.2
Q ss_pred EEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 88875066899999875432125899816884
Q gi|254780268|r 167 RIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 167 ~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
..+.+++++.+.+++|.+.|.+. .-++|+++
T Consensus 126 ~~v~~~~~~~~~~~~A~~~A~~~-~pGPV~l~ 156 (547)
T PRK08322 126 RQIVSPDNIPEVVREAFRLAEEE-RPGAVHLE 156 (547)
T ss_pred EECCCHHHHHHHHHHHHHHHHCC-CCCEEEEE
T ss_conf 98488999999999999997438-99728990
No 445
>PRK08636 aspartate aminotransferase; Provisional
Probab=39.32 E-value=28 Score=15.29 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=16.3
Q ss_pred EEECCC---HHHHHHHHHHHHHHCE
Q ss_conf 995599---8999999998765408
Q gi|254780268|r 386 IVHGKN---RKECMMRLNRALNEII 407 (443)
Q Consensus 386 I~~g~~---R~~Ai~~l~~aL~~~~ 407 (443)
|+.+.+ -++|++|+.++|++++
T Consensus 378 isf~~~~e~l~ea~~Rl~~~l~e~~ 402 (403)
T PRK08636 378 IALIENENRIRQAARNIKKFLKEFE 402 (403)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9971899999999999999999844
No 446
>pfam06050 HGD-D 2-hydroxyglutaryl-CoA dehydratase, D-component. Degradation of glutamate via the hydroxyglutarate pathway involves the syn-elimination of water from 2-hydroxyglutaryl-CoA. This anaerobic process is catalysed by 2-hydroxyglutaryl-CoA dehydratase, an enzyme with two components (A and D) that reversibly associate during reaction cycles. This component contains one non-reducible [4Fe-4S]2+ cluster and a reduced riboflavin 5'-monophosphate.
Probab=39.32 E-value=28 Score=15.29 Aligned_cols=15 Identities=27% Similarity=0.162 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 999999886515434
Q gi|254780268|r 254 GETCVKAMKKIDYRG 268 (443)
Q Consensus 254 ~~~A~~~~~~~g~~g 268 (443)
.++..++++..+.+|
T Consensus 272 ~~~~~~l~~~~~~dg 286 (345)
T pfam06050 272 LEYILKLAKEYGADG 286 (345)
T ss_pred HHHHHHHHHHHCCCE
T ss_conf 999999999819999
No 447
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=39.31 E-value=28 Score=15.29 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=48.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHH--HCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf 06866447099999999888809659998585577187767--5857999189985300069899999998709989945
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVR--LADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP 80 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~--~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP 80 (443)
++++|++-|.....+.+.+.++|...++|..++++...... ..-+++... + .|.+.| +-|--.++|++--
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd-~------t~~~~L-~~agi~~aD~vva 72 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGD-A------TDEDVL-EEAGIDDADAVVA 72 (225)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEEEEC-C------CCHHHH-HHCCCCCCCEEEE
T ss_conf 9899989857889999999878990899976889999863200044999926-8------898999-8679863899999
No 448
>PRK07945 hypothetical protein; Provisional
Probab=39.30 E-value=28 Score=15.29 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=42.9
Q ss_pred CCCCCC-CHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEE--ECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC
Q ss_conf 433345-579998732003301220002345782168887--50668999998754321258998168844342011033
Q gi|254780268|r 132 PGSGEV-YPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAY--SENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE 208 (443)
Q Consensus 132 p~~~~~-~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~--~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE 208 (443)
-|+... +.++-.+.|.+.||-.+.=.-+ |+...+++ +++.|.+.++........ +. .+ +-+.| +|
T Consensus 105 ~wSDG~~sieeMa~aA~~lGyeYlaITDH---S~~l~vA~GLs~erL~~Q~~eI~~ln~~-~~--~~---rIL~G---iE 172 (335)
T PRK07945 105 DWSDGGSPIEEMMATAAALGHEYCALTDH---SPRLTVANGLSPERLRKQLDVIAELNER-LA--PF---RILTG---IE 172 (335)
T ss_pred CCCCCCCHHHHHHHHHHHCCCEEEEECCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHH-CC--CC---EEEEE---EE
T ss_conf 84579786999999999839827998048---8534566897999999999999999854-48--92---79975---35
Q ss_pred EEEEEECC
Q ss_conf 15777347
Q gi|254780268|r 209 VQIFGDGM 216 (443)
Q Consensus 209 vqVl~D~~ 216 (443)
|.|+.||.
T Consensus 173 vDIL~DGs 180 (335)
T PRK07945 173 VDILEDGS 180 (335)
T ss_pred EEECCCCC
T ss_conf 32148988
No 449
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=39.25 E-value=28 Score=15.28 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=22.1
Q ss_pred EEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 1688875066899999875432125899816884
Q gi|254780268|r 165 GMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 165 Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
-...+.+.+++.+.+++|.+.|.+. .-++|+++
T Consensus 135 ~~~~v~~~~~i~~~l~~A~~~A~s~-r~GPV~l~ 167 (594)
T PRK09107 135 HNWLVKDVNDLARVIHEAFHVATSG-RPGPVVVD 167 (594)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHC-CCCCEEEE
T ss_conf 4067589999999999999999718-99877998
No 450
>PRK06855 aminotransferase; Validated
Probab=39.17 E-value=28 Score=15.28 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=12.5
Q ss_pred EEECHHHHHHHHHHHHH
Q ss_conf 87506689999987543
Q gi|254780268|r 169 AYSENDLSEAIDQARSE 185 (443)
Q Consensus 169 v~~~~el~~a~~~a~~e 185 (443)
|.++++|++..+.|..+
T Consensus 187 v~s~e~l~~i~~~a~~~ 203 (433)
T PRK06855 187 VYPKEILREIVDIAREY 203 (433)
T ss_pred CCCHHHHHHHHHHHHHC
T ss_conf 67999999999999975
No 451
>PRK00077 eno phosphopyruvate hydratase; Provisional
Probab=39.11 E-value=23 Score=15.93 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=11.7
Q ss_pred ECCCHHHHHHHHHHHHH
Q ss_conf 55998999999998765
Q gi|254780268|r 388 HGKNRKECMMRLNRALN 404 (443)
Q Consensus 388 ~g~~R~~Ai~~l~~aL~ 404 (443)
-++.|.|.+.|..|-|+
T Consensus 390 Ga~~R~ER~aKyNrLlr 406 (427)
T PRK00077 390 GSLSRSERVAKYNQLLR 406 (427)
T ss_pred CCCCCHHHHHHHHHHHH
T ss_conf 89840788999999999
No 452
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=39.11 E-value=28 Score=15.27 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=30.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCC
Q ss_conf 6866447099999999888809659998585577187
Q gi|254780268|r 4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAM 40 (443)
Q Consensus 4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~ 40 (443)
||||.+-|-+.+.+++.+--+|+..+.+ .|.|....
T Consensus 1 kvlvvG~GglG~e~~k~la~~Gvg~i~i-vD~d~i~~ 36 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHV-IDMDTIDV 36 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE-ECCCEECC
T ss_conf 9899928888999999999848985999-73993441
No 453
>PRK05575 cbiC precorrin-8X methylmutase; Validated
Probab=39.08 E-value=13 Score=17.62 Aligned_cols=92 Identities=14% Similarity=0.246 Sum_probs=40.7
Q ss_pred HHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHC-CCEEECCCHHHHHHHHCHHHHHHHH--HHCCCCCCCCCC
Q ss_conf 0069899999998709989945853131097666889845-9216268989998721899887766--422443324333
Q gi|254780268|r 59 SYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDH-HIKFIGPSSEHIKIMGDKITAKKTA--QQLGIPVVPGSG 135 (443)
Q Consensus 59 sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~-Gi~fIGPs~~ai~~~gDK~~~k~~a--~~~GVP~~p~~~ 135 (443)
+|++-+.+.+.|++.|..-- -+.+....++. ++..||-.|.++-.+-+-+.....- -=.|+| .|
T Consensus 96 C~i~d~~v~~~Ak~~g~TRs---------~aa~~~a~~~~~~IvvIGNAPTAL~~Lleli~~g~~~PalVIG~P--VG-- 162 (204)
T PRK05575 96 CYVSEEEVAKIAKEKGITRS---------MAAVEKAAEEGVEFFVFGNAPTALFKLKELIKEGKANPKFIIAVP--VG-- 162 (204)
T ss_pred EECCCCCHHHHHHHHCHHHH---------HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEECC--CC--
T ss_conf 86789646788774053599---------999997413189889993868999999999985899875799718--86--
Q ss_pred CCCHHHHHHHHHCCCCHHHH-HCCCCCCC
Q ss_conf 45579998732003301220-00234578
Q gi|254780268|r 136 EVYPHTAMPIAKEIGFPVLV-KASAGGGG 163 (443)
Q Consensus 136 ~~~~~ea~~~a~~iGyPvii-Kp~~gGGG 163 (443)
.....|.++...+.+.|.+. +-..||+.
T Consensus 163 FVgA~ESKe~L~~~~vP~It~~GrkGGS~ 191 (204)
T PRK05575 163 FVGAAESKEELEKLDIPYITVRGRKGGST 191 (204)
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf 56739999999868999899825987499
No 454
>PRK00143 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Reviewed
Probab=39.08 E-value=7 Score=19.55 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHH
Q ss_conf 557999873200330122000234578216888750668999998
Q gi|254780268|r 137 VYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQ 181 (443)
Q Consensus 137 ~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~ 181 (443)
.+.+|.+++|+++|+|+--|+- |.|+-.+-+ .++.+.++.
T Consensus 171 ~~K~eVR~iA~~~gL~~a~K~d----Sq~ICFi~~-~~y~~Fl~~ 210 (355)
T PRK00143 171 LTKPEVREIAAEIGLPTAKKKD----STGICFIGE-RNFKDFLSR 210 (355)
T ss_pred CCHHHHHHHHHHCCCCCCCCCC----CCCEEEECC-CCHHHHHHH
T ss_conf 7358999999975898899777----786044048-877899986
No 455
>pfam02563 Poly_export Polysaccharide biosynthesis/export protein. This is a family of periplasmic proteins involved in polysaccharide biosynthesis and/or export.
Probab=39.06 E-value=28 Score=15.26 Aligned_cols=60 Identities=23% Similarity=0.360 Sum_probs=38.4
Q ss_pred CCCCCCCCCC---EEEEECCCCC-CEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCE
Q ss_conf 2211112442---1588668998-44677760238770777684338999955998999999998765408
Q gi|254780268|r 341 PENFIPNPGE---ITYFHAPGGL-GIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEII 407 (443)
Q Consensus 341 p~~f~Ps~G~---i~~~~~p~~~-gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~ 407 (443)
+.++.-++|- |+.|..|+-. ..+||. ...|.. |.++++-+.|.+-.++-+++...|+++.
T Consensus 9 ~~~Y~lgpGD~l~i~v~g~~~~~~~~~V~~----dG~I~l---P~vG~v~v~GlT~~e~~~~i~~~l~~~~ 72 (83)
T pfam02563 9 SPDYRLGPGDVLRITVFGEPELSGEVRVDP----DGTISL---PLVGPVKVAGLTPEELEELIADKLAKYL 72 (83)
T ss_pred CCCCEECCCCEEEEEEECCCCCEEEEEECC----CCCEEC---CCCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 998888799999999947766407899999----972965---7664599807999999999999998650
No 456
>TIGR03549 conserved hypothetical protein TIGR03549. This family consists of remarkably well-conserved proteins from gamma and beta Proteobacteria, heavily skewed towards organisms of marine environments. This family has an OsmC-like N-terminal domain. It shares a central domain, modeled by pfam02624 and TIGR00702, with other families of smaller proteins. The function is unknown. Fifteen of the first sixteen members of this family are from selenouridine-positive genomes, but this correlation may be fortuitous.
Probab=39.05 E-value=26 Score=15.53 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=21.5
Q ss_pred CCCCCCHHHHHHHHHH--HHHHHHHHCCCCCCEEEEEEC---CCCE---EEEECCCCCC
Q ss_conf 4455889999999999--999886515434102458972---8834---9982276543
Q gi|254780268|r 241 HSPVISAQDRTEIGET--CVKAMKKIDYRGAGTIEFLYE---NGQF---YFIEMNTRLQ 291 (443)
Q Consensus 241 Pap~l~~~~~~~i~~~--A~~~~~~~g~~g~~tvEFl~~---~~~~---yflEvN~Rlq 291 (443)
.-|.++.++.++--.. +++..++.||- | +.+| +|+| .+.=||||-+
T Consensus 360 sLP~IP~eVlaryP~I~~~I~~Le~~Gfp----v-~v~DASLGG~fPVmcVtL~NP~ng 413 (718)
T TIGR03549 360 VLPDVPQEVLAKYPGILAGIKALEEQGFP----V-LVKDASLGGQFPVMCVTLMNPRTG 413 (718)
T ss_pred CCCCCCHHHHHHCCCHHHHHHHHHHCCCC----E-EEEECCCCCCCCEEEEEEECCCCC
T ss_conf 88887699998573099999999867982----7-998545689775589997717999
No 457
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=39.01 E-value=28 Score=15.26 Aligned_cols=142 Identities=20% Similarity=0.290 Sum_probs=73.4
Q ss_pred CCEEEEE--ECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE
Q ss_conf 9706866--44709999999988880965999858557718776758579991899853000698999999987099899
Q gi|254780268|r 1 MISKILI--ANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI 78 (443)
Q Consensus 1 m~~~iLi--anrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai 78 (443)
||||-|| -+.--| ..+.+.+.++|++-+.- -..+.+.+.+. + +....+.|.+.+.|+. -.+-.+
T Consensus 3 ~ikrALISV~DKtgl-~~la~~L~~~g~eiiST----GGTak~l~~~g----i-~v~~Vs~~T~fpEil~----GRVKTL 68 (514)
T PRK00881 3 MIKRALISVSDKTGI-VEFAKALVALGVEILST----GGTAKLLAEAG----I-PVTEVSDVTGFPEILD----GRVKTL 68 (514)
T ss_pred CCCEEEEEEECCCCH-HHHHHHHHHCCCEEEEC----CHHHHHHHHCC----C-CEEEHHHCCCCHHHHC----CCCCCC
T ss_conf 764799998866498-99999999889899987----27899999879----9-6588886049806529----815646
Q ss_pred ECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCC--------CCCC-----CCCHHHHHHH
Q ss_conf 45853131097666889845921626898999872189988776642244332--------4333-----4557999873
Q gi|254780268|r 79 HPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVV--------PGSG-----EVYPHTAMPI 145 (443)
Q Consensus 79 hPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~--------p~~~-----~~~~~ea~~~ 145 (443)
||- --.||-+- .|+..-.+-++++|++.+ |+.. ..+.+++.+.
T Consensus 69 HP~--------------IhgGIL~~----------r~~~~h~~~l~~~~i~~IDlVvvNLYPFe~~v~~~~~~~~~~IEn 124 (514)
T PRK00881 69 HPK--------------IHGGILAR----------RDNPEHVAALEEHGIEPIDLVVVNLYPFEETVAKPGVTLEEAIEN 124 (514)
T ss_pred CCH--------------HHHHHHCC----------CCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCCHHHHHHH
T ss_conf 830--------------22666137----------898889999997699963389981454698750489998999884
Q ss_pred HHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHH
Q ss_conf 2003301220002345782168887506689999987
Q gi|254780268|r 146 AKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQA 182 (443)
Q Consensus 146 a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a 182 (443)
. .||-|-||+++.=-.- -+.++.+++|....++..
T Consensus 125 I-DIGGpsmiRAAAKN~~-~V~Vi~dp~dY~~~~~~l 159 (514)
T PRK00881 125 I-DIGGPTMVRAAAKNHK-DVTVVVDPADYDAVLEEL 159 (514)
T ss_pred C-CCCCHHHHHHHHHCCC-CEEEECCHHHHHHHHHHH
T ss_conf 4-7774999999874478-759964789999999999
No 458
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=38.98 E-value=28 Score=15.26 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=26.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 06866447099999999888809659998
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAV 31 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v 31 (443)
|++||.+-|++|.|=++.+-+.|-...+|
T Consensus 11 k~vLVVGGG~vA~rK~~~Ll~~gA~VtVv 39 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHITVI 39 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 86999889899999999998689969998
No 459
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=38.90 E-value=28 Score=15.25 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=55.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf 06866447099999999888809659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY 82 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy 82 (443)
+|+.|-+-|-.+....+.+.++|.+.|+| ||.+. .+.-++ .+....+...++.+-....|+.
T Consensus 24 ~~vaVqGfGnVG~~~a~~l~~~Gakvvav-sD~~G----------~i~~~~-------g~~~~~~~~~~~~~~~~~~~~~ 85 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAV-SDPDG----------YIYDPG-------ITTEELINYAVALGGSARVKVQ 85 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE-ECCCC----------EEECCC-------CCCHHHHHHHHHHCCCCCCCCC
T ss_conf 99999898899999999999859989999-85787----------177899-------9869999999981896536665
Q ss_pred CHHHCCHHHHHHHHHCCCEEECCCHHHHHHH-----HCHHHHHHHHHHCCCCCC
Q ss_conf 3131097666889845921626898999872-----189988776642244332
Q gi|254780268|r 83 GFLSENAKFAEILEDHHIKFIGPSSEHIKIM-----GDKITAKKTAQQLGIPVV 131 (443)
Q Consensus 83 GfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~-----gDK~~~k~~a~~~GVP~~ 131 (443)
-+++...-|...| .|- + |+ +++.. -+++++|-+++.++-|+.
T Consensus 86 ~~~~~~~~~~~~~---DIl-i-Pa--Al~~~I~~~~a~~i~ak~I~EgAN~P~t 132 (217)
T cd05211 86 DYFPGEAILGLDV---DIF-A-PC--ALGNVIDLENAKKLKAKVVAEGANNPTT 132 (217)
T ss_pred CCCCCCCCCCCCC---CEE-E-EC--CCCCCCCHHHHHHHCCEEEECCCCCCCC
T ss_conf 3059865003677---689-6-42--4458879899987177289506789989
No 460
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=38.86 E-value=28 Score=15.24 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=27.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCE-EEEECCCH
Q ss_conf 0686644709999999988880965-99985855
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIP-TVAVHSTA 35 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~-tv~v~s~~ 35 (443)
++|+|.+-|.-+.....++|++|.. .|.+.++.
T Consensus 4 ~~iVIIG~G~AG~~aA~~lR~~g~~g~Itli~~E 37 (400)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDE 37 (400)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 7299997759999999999806949979999899
No 461
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=38.84 E-value=28 Score=15.24 Aligned_cols=172 Identities=19% Similarity=0.271 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC----CCCEEECCCC-
Q ss_conf 99999999888809659998---585577187767585799918998530006989999999870----9989945853-
Q gi|254780268|r 12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT----GADAIHPGYG- 83 (443)
Q Consensus 12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~----~~daihPGyG- 83 (443)
+...++++++.+-|...+=+ +|||=..-+-.+.|.+.. | ++..+.+.++++.++. +..-+.=+|-
T Consensus 14 ~~~~~~~~~l~~~G~d~iEiGiPfsDP~aDGpvIq~A~~~a-L------~~g~~~~~~~~~~~~~r~~~~~pivlM~Y~N 86 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERA-L------ANGVTLKDVLELVKEIRKKNTIPIVLMGYYN 86 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-H------HCCCCHHHHHHHHHHHHHCCCCCEEEEEECH
T ss_conf 99999999999769999997899888776589999999999-9------7699499999999998734798889998445
Q ss_pred -HHHC-CHHHHHHHHHCCCE-EECCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHH-CCCCHHH--
Q ss_conf -1310-97666889845921-62689--89998721899887766422443324333455799987-320-0330122--
Q gi|254780268|r 84 -FLSE-NAKFAEILEDHHIK-FIGPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMP-IAK-EIGFPVL-- 154 (443)
Q Consensus 84 -fLsE-n~~fa~~~e~~Gi~-fIGPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~-~a~-~iGyPvi-- 154 (443)
++.- -..|++.|.++|+. +|=|. .+ .....+..++++|+..++.....++++.++ .++ .-||=..
T Consensus 87 ~i~~~G~e~F~~~~~~~Gv~GviipDLP~e------e~~~~~~~~~~~~i~~I~lvsPtt~~~ri~~i~~~s~gfiY~vs 160 (242)
T cd04724 87 PILQYGLERFLRDAKEAGVDGLIIPDLPPE------EAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVS 160 (242)
T ss_pred HHHHHCHHHHHHHHHHCCCCEEEECCCCHH------HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 766528999999999759975870699957------84689999986598388996898878999999974798499985
Q ss_pred HHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEC
Q ss_conf 00023457821688875066899999875432125899816884434201103
Q gi|254780268|r 155 VKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHI 207 (443)
Q Consensus 155 iKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhi 207 (443)
.+.+- |.+. ...+++.+.++..++.. +-++++===|..+.|+
T Consensus 161 ~~GvT-----G~~~-~~~~~~~~~i~~ik~~t-----~~Pv~vGFGI~~~e~v 202 (242)
T cd04724 161 RTGVT-----GART-ELPDDLKELIKRIRKYT-----DLPIAVGFGISTPEQA 202 (242)
T ss_pred CCCCC-----CCCC-CCHHHHHHHHHHHHHHC-----CCCEEEECCCCCHHHH
T ss_conf 77777-----8775-56499999999998716-----8974874387999999
No 462
>PRK09492 treR trehalose repressor; Provisional
Probab=38.80 E-value=12 Score=17.95 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHC-CEEEECCCCCCCCHHC-CHHHHHHHHHHCCCCEEE
Q ss_conf 9999999988880965999858557718776758-5799918998530006-989999999870998994
Q gi|254780268|r 12 EIALRILRACKELGIPTVAVHSTADSGAMHVRLA-DESVCIGPPSSKDSYL-NIQQIVAACEVTGADAIH 79 (443)
Q Consensus 12 eia~riira~~elGi~tv~v~s~~D~~a~~~~~A-De~~~i~~~~~~~sYl-di~~ii~~a~~~~~daih 79 (443)
|..-||.++++||||.. +.-..+.-.+.. --.+.++. .....|. =+..+.+.+.++|.+.+.
T Consensus 34 eTr~rV~~~a~elgY~P-----n~~Ar~L~~~~t~~Ig~i~~~-~~~~~~~~~~~~i~~~~~~~gy~~~i 97 (315)
T PRK09492 34 RTRERVEAVINQHGFSP-----SKSARAMRGQSDKVVGIIVSR-LDSPSENLAVQTMLPAFYQQGYDPII 97 (315)
T ss_pred HHHHHHHHHHHHHCCCC-----CHHHHHHHCCCCCEEEEECCC-CCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99999999999969980-----778897504888646662267-78836789999999999974981899
No 463
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=38.79 E-value=17 Score=16.75 Aligned_cols=46 Identities=30% Similarity=0.447 Sum_probs=21.5
Q ss_pred HHCCEEEECCCCCC----CCHHCCHHHHHHHHHHCCCCE--EECCCC-----HHHCCHHH
Q ss_conf 75857999189985----300069899999998709989--945853-----13109766
Q gi|254780268|r 43 RLADESVCIGPPSS----KDSYLNIQQIVAACEVTGADA--IHPGYG-----FLSENAKF 91 (443)
Q Consensus 43 ~~ADe~~~i~~~~~----~~sYldi~~ii~~a~~~~~da--ihPGyG-----fLsEn~~f 91 (443)
-+-||||.|--+-. .|+ ||.|++.+.+..-+- |..||- ||+-||-+
T Consensus 109 LFiDEAYSLaRGGEKDFGKEA---IDtLVK~mEd~~~~lvlILAGY~~EM~yFL~~NPGL 165 (261)
T TIGR02881 109 LFIDEAYSLARGGEKDFGKEA---IDTLVKAMEDQRNELVLILAGYSDEMDYFLSLNPGL 165 (261)
T ss_pred HHHHHHHHHHCCCCCCCCCHH---HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCC
T ss_conf 055777776148888766208---889999876156986899708768999986207797
No 464
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=38.77 E-value=28 Score=15.23 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=28.2
Q ss_pred CCEE--EEEECCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 9706--86644709999999988880965999858
Q gi|254780268|r 1 MISK--ILIANRGEIALRILRACKELGIPTVAVHS 33 (443)
Q Consensus 1 m~~~--iLianrGeia~riira~~elGi~tv~v~s 33 (443)
|-++ |+|++-|+-..-....|.++|.++.+|..
T Consensus 1 Ms~~YDviVIG~GpAG~~AA~~aa~~G~kValiE~ 35 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 99618899999888999999999978991999972
No 465
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=38.72 E-value=18 Score=16.65 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=16.2
Q ss_pred HHHHHHHHHCCCEEEEECCC
Q ss_conf 99999888809659998585
Q gi|254780268|r 15 LRILRACKELGIPTVAVHST 34 (443)
Q Consensus 15 ~riira~~elGi~tv~v~s~ 34 (443)
.||-|.|+|++.+||.|.|.
T Consensus 33 ~~lG~~~~e~rp~tIiV~Sa 52 (268)
T COG3384 33 RELGRELPELRPDTIIVFSA 52 (268)
T ss_pred HHHHHHHHHCCCCEEEEEEC
T ss_conf 99977656608987999835
No 466
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=38.67 E-value=28 Score=15.22 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=26.7
Q ss_pred EEEEECCCHH-----HHHHHHHHHHCCCEEEEECCCHHHCCC
Q ss_conf 6866447099-----999999888809659998585577187
Q gi|254780268|r 4 KILIANRGEI-----ALRILRACKELGIPTVAVHSTADSGAM 40 (443)
Q Consensus 4 ~iLianrGei-----a~riira~~elGi~tv~v~s~~D~~a~ 40 (443)
||-|.+.|=| +.-+.-++-++|.++..|-.||...++
T Consensus 2 kiaiyGKGGIGKSTttaNl~aaLA~~G~kVl~IgcDpk~Dst 43 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDST 43 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
T ss_conf 799977996578778999999999879959997789951556
No 467
>CHL00067 rps2 ribosomal protein S2
Probab=38.54 E-value=28 Score=15.21 Aligned_cols=37 Identities=11% Similarity=0.124 Sum_probs=21.9
Q ss_pred HHHHHHHHHCC--CEEECCCHHHHHHHHCHHHHHHHHHHCCCCCC
Q ss_conf 76668898459--21626898999872189988776642244332
Q gi|254780268|r 89 AKFAEILEDHH--IKFIGPSSEHIKIMGDKITAKKTAQQLGIPVV 131 (443)
Q Consensus 89 ~~fa~~~e~~G--i~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~ 131 (443)
..|...+...| +-|+|..+.+-+. .++.+.+.|-|-+
T Consensus 54 ~~~i~~~~~~~g~ILfVgTk~~~~~~------i~~~A~~~~~~yV 92 (227)
T CHL00067 54 CDLVFDAASRGKKFLFVGTKKQAADL------VASAAIRARCHYV 92 (227)
T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHH------HHHHHHHHCCCEE
T ss_conf 99999998549947999765878999------9999998199715
No 468
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=38.49 E-value=28 Score=15.20 Aligned_cols=19 Identities=32% Similarity=0.172 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHCCCCEEE
Q ss_conf 6989999999870998994
Q gi|254780268|r 61 LNIQQIVAACEVTGADAIH 79 (443)
Q Consensus 61 ldi~~ii~~a~~~~~daih 79 (443)
..+.+++++|.+.+...|.
T Consensus 29 e~~~Avi~AAee~~sPvIl 47 (285)
T PRK07709 29 EWTQAILAAAEEEKSPVIL 47 (285)
T ss_pred HHHHHHHHHHHHHCCCEEE
T ss_conf 9999999999997889999
No 469
>CHL00175 minD septum-site determining protein; Validated
Probab=38.37 E-value=29 Score=15.19 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 99999999888809659998585
Q gi|254780268|r 12 EIALRILRACKELGIPTVAVHST 34 (443)
Q Consensus 12 eia~riira~~elGi~tv~v~s~ 34 (443)
-+++-..-++.++|.++.++..|
T Consensus 29 T~a~NLa~aLA~~G~kVlliD~D 51 (279)
T CHL00175 29 TTTANLGMSIARLGYRVALIDAD 51 (279)
T ss_pred HHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99999999999789988999578
No 470
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=38.02 E-value=29 Score=15.15 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=26.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 68664470999999998888096599985
Q gi|254780268|r 4 KILIANRGEIALRILRACKELGIPTVAVH 32 (443)
Q Consensus 4 ~iLianrGeia~riira~~elGi~tv~v~ 32 (443)
-++|++-|+-.......|.++|.++.+|-
T Consensus 5 DviVIG~GpaG~~aA~~aa~~G~~ValIE 33 (441)
T PRK08010 5 QAVIIGFGKAGKTLAVTLAKAGWRVALIE 33 (441)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 98999978899999999997899299997
No 471
>TIGR00274 TIGR00274 glucokinase regulator homolog; InterPro: IPR005488 The glucokinase regulatory protein (GCKR) is a vertebrate protein that inhibits glucokinase by forming an inactive complex with the enzyme. It is a protein of about 70 Kd which seems to be evolutionary related to a number of uncharacterised bacterial proteins which are about half the size of GCKR..
Probab=37.91 E-value=29 Score=15.14 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEEC
Q ss_conf 4709999999988880965999858557718776758579991
Q gi|254780268|r 9 NRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCI 51 (443)
Q Consensus 9 nrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i 51 (443)
+|=|=+.=..+.||.+|-+||.|-++|.+..+. .||.++.+
T Consensus 137 GrTPYv~gaL~yAr~~Ga~Ti~iacnp~S~~s~--~Ad~~I~~ 177 (291)
T TIGR00274 137 GRTPYVIGALEYARKLGAKTIAIACNPESAVSK--QADVAIEV 177 (291)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC--CCCCCCEE
T ss_conf 975789999999997078257774177422312--14430023
No 472
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=37.75 E-value=29 Score=15.13 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=9.3
Q ss_pred EECHHHHHHHHHHHHH
Q ss_conf 7506689999987543
Q gi|254780268|r 170 YSENDLSEAIDQARSE 185 (443)
Q Consensus 170 ~~~~el~~a~~~a~~e 185 (443)
++.+|..+.++.|+..
T Consensus 157 kt~~ea~~l~~dA~~l 172 (266)
T PRK00311 157 RDEEAAEQLLEDAKAL 172 (266)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 473
>PRK06361 hypothetical protein; Provisional
Probab=37.70 E-value=29 Score=15.12 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=10.2
Q ss_pred HHHHHHHHCCCEEEEE
Q ss_conf 9999888809659998
Q gi|254780268|r 16 RILRACKELGIPTVAV 31 (443)
Q Consensus 16 riira~~elGi~tv~v 31 (443)
..+++|+++|++.++|
T Consensus 19 Ema~aA~~~G~~yiaI 34 (216)
T PRK06361 19 ELVRRARVLGYRAIAI 34 (216)
T ss_pred HHHHHHHHCCCCEEEE
T ss_conf 9999999869909999
No 474
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=37.57 E-value=29 Score=15.11 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=20.7
Q ss_pred CCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 99844677760238770777684338999955998999999998
Q gi|254780268|r 358 GGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNR 401 (443)
Q Consensus 358 ~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~ 401 (443)
.-.|+|++..-.+-..-|+...| +-++.+=++|.++|-+-+.+
T Consensus 401 ~~DGik~~~~dgwiliRpSgTEP-~iriy~Ea~~~e~a~~l~~~ 443 (445)
T cd05803 401 TLDGLRLDSEDSWVHVRPSNTEP-IVRIIAEAPTQDEAEALADR 443 (445)
T ss_pred CCCEEEEECCCEEEEEECCCCCE-EEEEEEEECCHHHHHHHHHH
T ss_conf 14638997598899998119811-68999975999999999875
No 475
>pfam07071 DUF1341 Protein of unknown function (DUF1341). This family consists of several hypothetical bacterial proteins of around 220 residues in length. The function of this family is unknown.
Probab=37.45 E-value=30 Score=15.09 Aligned_cols=159 Identities=19% Similarity=0.137 Sum_probs=75.6
Q ss_pred ECCCHHHHHHHHHHHHCCCEEEEE----CCCHHHCC----CCHHHCCE--EEECCCCCCCCHHCCHHHHHHHHHHC---C
Q ss_conf 447099999999888809659998----58557718----77675857--99918998530006989999999870---9
Q gi|254780268|r 8 ANRGEIALRILRACKELGIPTVAV----HSTADSGA----MHVRLADE--SVCIGPPSSKDSYLNIQQIVAACEVT---G 74 (443)
Q Consensus 8 anrGeia~riira~~elGi~tv~v----~s~~D~~a----~~~~~ADe--~~~i~~~~~~~sYldi~~ii~~a~~~---~ 74 (443)
|+.-+=|..|+.++. |.-.+.| |++.+.-- .+-...|. ++-||.+.+..+. .+.+++++. .
T Consensus 11 A~d~~NAkei~eAae--G~v~vGvlskny~tveeav~~mk~y~~~~~~~vSVGLGaGDp~Q~~----~Va~Ia~~~~P~H 84 (218)
T pfam07071 11 AGSIENAKEIYEAAE--GHVLVGVLSKNYPTVEEAVEDMKEYQAEIDNAISVGLGAGDPNQSA----MVADISRHVQPQH 84 (218)
T ss_pred CCCHHHHHHHHHHHC--CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHH----HHHHHHHHCCCCC
T ss_conf 286552999998745--8679888606789889999999999974898568842899979999----9999998749765
Q ss_pred CCEEECCCCHHH----CCHHHHH----HHHHCCCEEE--CCCH-HHHHHHHCHHHHHHHHHHCCCCCCCCCC---CCCHH
Q ss_conf 989945853131----0976668----8984592162--6898-9998721899887766422443324333---45579
Q gi|254780268|r 75 ADAIHPGYGFLS----ENAKFAE----ILEDHHIKFI--GPSS-EHIKIMGDKITAKKTAQQLGIPVVPGSG---EVYPH 140 (443)
Q Consensus 75 ~daihPGyGfLs----En~~fa~----~~e~~Gi~fI--GPs~-~ai~~~gDK~~~k~~a~~~GVP~~p~~~---~~~~~ 140 (443)
+.-++||-||-- .+-.+.. .--+-|...| ||.+ +.-+..-+=..+-.+++..|++.+.++. ....+
T Consensus 85 VNQvFt~ag~sr~~Lg~~~T~vN~LvsPTG~~G~VkIsTGp~Ss~~~~~iV~vetAiaml~dmG~~SiKffPm~Gl~~le 164 (218)
T pfam07071 85 INQVFTGVGTSRALLGQNDTVVNGLVSPTGKVGEVKISTGPLSSQKEDAIVPVETAIAMLKDMGGSSVKFFPMGGLKHLD 164 (218)
T ss_pred CCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 46415422777887079861787666578865358835677544577751309999999997298805664267611099
Q ss_pred HHH---HHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHH
Q ss_conf 998---7320033012200023457821688875066899999875
Q gi|254780268|r 141 TAM---PIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQAR 183 (443)
Q Consensus 141 ea~---~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~ 183 (443)
|.. +++.+.|| .+-|..| + +.+.+++.++.+.
T Consensus 165 E~~avA~aca~~g~--~lEPTGG---I------dl~N~~~I~~i~l 199 (218)
T pfam07071 165 EYRAVAKACAEHGF--YLEPTGG---I------DLDNFEEIVQIAL 199 (218)
T ss_pred HHHHHHHHHHHCCC--EECCCCC---C------CHHHHHHHHHHHH
T ss_conf 99999999997693--6666788---4------6777999999999
No 476
>PRK05939 hypothetical protein; Provisional
Probab=37.37 E-value=30 Score=15.09 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=12.8
Q ss_pred EEEECCCHHHHHHHHHHHHH
Q ss_conf 99955998999999998765
Q gi|254780268|r 385 LIVHGKNRKECMMRLNRALN 404 (443)
Q Consensus 385 iI~~g~~R~~Ai~~l~~aL~ 404 (443)
+-+-=+|-++=++-+.+||+
T Consensus 375 lSvGlEd~~DLi~DL~qAL~ 394 (396)
T PRK05939 375 VSVGIEDTADLIADFEQALD 394 (396)
T ss_pred EEEEECCHHHHHHHHHHHHH
T ss_conf 99410999999999999984
No 477
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=37.30 E-value=30 Score=15.08 Aligned_cols=68 Identities=21% Similarity=0.183 Sum_probs=32.0
Q ss_pred EEECCCHHHHHHHHHHHHCCCEEEE----ECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE
Q ss_conf 6644709999999988880965999----858557718776758579991899853000698999999987099899
Q gi|254780268|r 6 LIANRGEIALRILRACKELGIPTVA----VHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI 78 (443)
Q Consensus 6 LianrGeia~riira~~elGi~tv~----v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai 78 (443)
|..-.||+++ .|+|.+.|+-.++ .+|-.|-......-...-+.|...... . -...+++-|++.|+.++
T Consensus 77 l~hp~gE~a~--AraA~~~gi~~~lSt~ss~slEdVa~a~~~~~~~wfQLY~~~dr-~--~~~~li~RA~~aG~~al 148 (344)
T cd02922 77 LAHPDGELNL--ARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDR-T--KTEELLKRAEKLGAKAI 148 (344)
T ss_pred HCCCCHHHHH--HHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCH-H--HHHHHHHHHHHCCCCEE
T ss_conf 3288456999--99999748865740577788899998656898669998247767-9--99999999998699889
No 478
>TIGR00032 argG argininosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate , . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process.
Probab=37.29 E-value=30 Score=15.08 Aligned_cols=97 Identities=21% Similarity=0.183 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHCCCCEEECCCCHHHCCHH--H--HHHHHHCCCEEECC--CHHHHHHHHCHHHHHHHHHHCCCCCCCCC
Q ss_conf 698999999987099899458531310976--6--68898459216268--98999872189988776642244332433
Q gi|254780268|r 61 LNIQQIVAACEVTGADAIHPGYGFLSENAK--F--AEILEDHHIKFIGP--SSEHIKIMGDKITAKKTAQQLGIPVVPGS 134 (443)
Q Consensus 61 ldi~~ii~~a~~~~~daihPGyGfLsEn~~--f--a~~~e~~Gi~fIGP--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~ 134 (443)
|=...++++|++.||+||==|=++= =|.+ | .-...+.+++.|-| ..+-++.++-|...-+-+.+.|||++--.
T Consensus 100 lIA~~lVe~Ak~~Ga~AvaHGCTGK-GNDQ~RFe~~~~~~~p~LkviaP~R~~~~~e~lgGR~e~~eYa~~~Gip~p~~~ 178 (420)
T TIGR00032 100 LIAKKLVEVAKKEGAEAVAHGCTGK-GNDQVRFERSIRALNPDLKVIAPWRDLNLTEELGGREEEIEYAAQKGIPVPMTK 178 (420)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCC-CCCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf 9999999998466954987076877-741357658887526898587473464677640594889999996688876546
Q ss_pred CC-CCHHH-HHH---HHHCCCCH-HHHHCC
Q ss_conf 34-55799-987---32003301-220002
Q gi|254780268|r 135 GE-VYPHT-AMP---IAKEIGFP-VLVKAS 158 (443)
Q Consensus 135 ~~-~~~~e-a~~---~a~~iGyP-viiKp~ 158 (443)
.. -|.|+ ... -+..+-.| -..||.
T Consensus 179 ~K~YSiD~Nl~grs~Ea~~LEdP~~~~Ppe 208 (420)
T TIGR00032 179 EKPYSIDENLWGRSIEAGILEDPSDTEPPE 208 (420)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 777762366775555055357887888814
No 479
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=37.23 E-value=30 Score=15.07 Aligned_cols=59 Identities=10% Similarity=0.053 Sum_probs=30.6
Q ss_pred HHHHHHHHCCCCC----CCCCCCCCHHHHHHHHHCC-CCHHHHHCCCCCCCCEEEEEEECHHHHHHH
Q ss_conf 8877664224433----2433345579998732003-301220002345782168887506689999
Q gi|254780268|r 118 TAKKTAQQLGIPV----VPGSGEVYPHTAMPIAKEI-GFPVLVKASAGGGGRGMRIAYSENDLSEAI 179 (443)
Q Consensus 118 ~~k~~a~~~GVP~----~p~~~~~~~~ea~~~a~~i-GyPviiKp~~gGGG~Gi~vv~~~~el~~a~ 179 (443)
++.++++..|+++ .||....+.++..++.++- .+-.+. -++.=-+-|+ .++-+++.+..
T Consensus 94 R~~~ia~~~g~~v~~l~~~~g~~~~~~~ve~~L~~~~~~~~v~-~vH~ETSTGv--ln~l~~i~~~~ 157 (368)
T PRK13479 94 RIAKIAEYLGIAHVVLDTGEDEPPDAAAVEAALAADPRITHVA-LVHCETTTGI--LNPLDEIAAVV 157 (368)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEE-EEECCCCCCC--CCCHHHHHHHH
T ss_conf 9999999819975998789999889999999997499967899-9850677203--16799999999
No 480
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=37.21 E-value=30 Score=15.07 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=30.1
Q ss_pred HHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf 20002345782168887506689999987543212589981688443420
Q gi|254780268|r 154 LVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLEN 203 (443)
Q Consensus 154 iiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~ 203 (443)
..|-+.+-|.+|. .|++++||..++++|+.. +++++||=-++.
T Consensus 143 f~~~A~a~G~~g~-~V~~~~eL~~Al~~Al~~------~gP~vIev~vdP 185 (205)
T cd02003 143 FAANARSLGARVE-KVKTIEELKAALAKAKAS------DRTTVIVIKTDP 185 (205)
T ss_pred HHHHHHHCCCEEE-EECCHHHHHHHHHHHHHC------CCCEEEEEEECC
T ss_conf 9999987497089-938889999999999968------996999999379
No 481
>pfam00551 Formyl_trans_N Formyl transferase. This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.
Probab=37.15 E-value=30 Score=15.06 Aligned_cols=80 Identities=19% Similarity=0.208 Sum_probs=47.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCC--CEEEEECCCHH-HCCCCH--HHCCEEEECCCCC-CCCHHCCHHHHHHHHHHCCCCE
Q ss_conf 6866447099999999888809--65999858557-718776--7585799918998-5300069899999998709989
Q gi|254780268|r 4 KILIANRGEIALRILRACKELG--IPTVAVHSTAD-SGAMHV--RLADESVCIGPPS-SKDSYLNIQQIVAACEVTGADA 77 (443)
Q Consensus 4 ~iLianrGeia~riira~~elG--i~tv~v~s~~D-~~a~~~--~~ADe~~~i~~~~-~~~sYldi~~ii~~a~~~~~da 77 (443)
-||+-++|--+..+++++++-+ ++.++|.|+.+ ...... +.--....+.... ...+ +.-+++++..++.++|-
T Consensus 4 avl~SG~Gsnl~~Il~a~~~~~l~~~I~~Visn~~~~~~~~~a~~~~ip~~~~~~~~~~~r~-~~~~~~~~~l~~~~~Dl 82 (181)
T pfam00551 4 AVLISGTGSNLQALLDALRKGGHEVEIVAVVTNKDKAAGLERAEQAGIPVEVFEHKNFTPRS-QFDSELADSLAALAPDL 82 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCHH-HHHHHHHHHHHHHCCCE
T ss_conf 99990796659999999981999988999995895728888999859998980677899834-61899999999749999
Q ss_pred E-ECCCCH
Q ss_conf 9-458531
Q gi|254780268|r 78 I-HPGYGF 84 (443)
Q Consensus 78 i-hPGyGf 84 (443)
| ..||+.
T Consensus 83 iv~~g~~~ 90 (181)
T pfam00551 83 IVLAGYMR 90 (181)
T ss_pred EEEECHHH
T ss_conf 99801633
No 482
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=37.03 E-value=16 Score=17.06 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=37.8
Q ss_pred HHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
Q ss_conf 7320033012200023457821688875066899999875432125899816884434201
Q gi|254780268|r 144 PIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENP 204 (443)
Q Consensus 144 ~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~ 204 (443)
+.+..+||+-+.|.+. ..+.....+.+.+..+.++-.+-.|-++||+=+|=+.+
T Consensus 124 e~~~~l~f~h~~k~a~-------~~lq~a~~l~~l~~~~tqeVr~~tGfDRVMlYrF~~d~ 177 (750)
T COG4251 124 ETASFLGFYHLAKLAM-------NRLQSAANLRDLLSRTTQEVRRMTGFDRVMLYRFDEDG 177 (750)
T ss_pred CCCCCCCHHHHHHHHH-------HHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 6543222488999999-------99863864999999999999986087548999605788
No 483
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=36.97 E-value=30 Score=15.04 Aligned_cols=101 Identities=26% Similarity=0.435 Sum_probs=55.8
Q ss_pred ECCCC---HHHCCHHHHHHHHHCCCEE----ECCC-H-HHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 45853---1310976668898459216----2689-8-999872189988776642244332433345579998732003
Q gi|254780268|r 79 HPGYG---FLSENAKFAEILEDHHIKF----IGPS-S-EHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEI 149 (443)
Q Consensus 79 hPGyG---fLsEn~~fa~~~e~~Gi~f----IGPs-~-~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~i 149 (443)
.||-| |+| .|...+.+.|++. |=|+ | .-=.++|||.++.+++.+-.+=+-|+
T Consensus 46 ~PGaGKSTl~~---~l~~~lrRrG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~dPg---------------- 106 (333)
T TIGR00750 46 VPGAGKSTLVE---KLIMELRRRGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTDPG---------------- 106 (333)
T ss_pred CCCCCHHHHHH---HHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC----------------
T ss_conf 88885777999---99899976597689998879759755145456887754422223322898----------------
Q ss_pred CCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEE
Q ss_conf 301220002345782168887506689999987543212589981688443420110331577
Q gi|254780268|r 150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIF 212 (443)
Q Consensus 150 GyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl 212 (443)
++++|...-|..|- +-....|+-..++ +||=+.||||--=-| =.||+|+
T Consensus 107 ---~FIRs~ptrG~lGG-ls~at~~~~~lld--------A~G~DVI~vETVGVG--QSEVdi~ 155 (333)
T TIGR00750 107 ---VFIRSMPTRGSLGG-LSKATRELVKLLD--------AAGYDVILVETVGVG--QSEVDII 155 (333)
T ss_pred ---CEECCCCCCCCHHH-HHHHHHHHHHHHH--------HCCCCEEEEEEECCC--HHHHHHH
T ss_conf ---56767766675257-8799999999998--------638987999841575--2487887
No 484
>PRK08199 acetolactate synthase 2 catalytic subunit; Validated
Probab=36.72 E-value=30 Score=15.02 Aligned_cols=130 Identities=18% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEE--CCCCHHHCCHHHHHHH-HHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 9999999870998994--5853131097666889-845921626898999872189988776642244332433345579
Q gi|254780268|r 64 QQIVAACEVTGADAIH--PGYGFLSENAKFAEIL-EDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPH 140 (443)
Q Consensus 64 ~~ii~~a~~~~~daih--PGyGfLsEn~~fa~~~-e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ 140 (443)
+.|++.-++.|++-|+ || +.+..|..++ +..+++||...-|......==--+|..=+-.-+-+..|-...+.-
T Consensus 6 ~~l~~~L~~~Gv~~vFg~pG----~~~~~l~dal~~~~~i~~v~~~hE~~A~~aAdgyar~tg~pgv~~~t~GpG~~N~~ 81 (553)
T PRK08199 6 QILVDALRANGVERVFCVPG----ESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNAS 81 (553)
T ss_pred HHHHHHHHHCCCCEEEEECC----CCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHH
T ss_conf 99999999879998999689----87799999997359974991287899999999999986998899985474599999
Q ss_pred HHHHHHHCCCCHHH--------------------HHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 99873200330122--------------------00023457821688875066899999875432125899816884
Q gi|254780268|r 141 TAMPIAKEIGFPVL--------------------VKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 141 ea~~~a~~iGyPvi--------------------iKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
....-|..=+-|++ ....+.--.|-...+.+++++.+.+++|.+.+... .-++|+++
T Consensus 82 ~~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~~-~~GPV~l~ 158 (553)
T PRK08199 82 IGVHTAFQDSTPMILFVGQVAREFREREAFQEIDYRRMFGPMAKWVAEIDDAARIPELVARAFHVATSG-RPGPVVLA 158 (553)
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCCHHHHCCCCEECEEECCCHHHHHHHHHHHHHHHHCC-CCCCEEEE
T ss_conf 999999972998899958898454688876311244220230103047899999899999999997428-99738999
No 485
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=36.49 E-value=31 Score=14.99 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=0.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 068664470999999998888096599985855
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAVHSTA 35 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v~s~~ 35 (443)
+||+|.+-|.+|+.+...++++|.++..++..+
T Consensus 137 ~~v~VvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 169 (277)
T pfam07992 137 KRVVVVGGGYIGLELAAALAKLGAEVTVVERRD 169 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 669997998759999999997299379998657
No 486
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=36.47 E-value=31 Score=14.99 Aligned_cols=107 Identities=18% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCC-HHHHHHHHCHHHHHHHHHHCCCCCCCCCCC-----
Q ss_conf 89999999870998994585313109766688984592162689-899987218998877664224433243334-----
Q gi|254780268|r 63 IQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPS-SEHIKIMGDKITAKKTAQQLGIPVVPGSGE----- 136 (443)
Q Consensus 63 i~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs-~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~----- 136 (443)
.+.+.+++.+.+.+.++-| .|-++-...--.|=||. .+.++.+ +++-++.|+|++--...
T Consensus 36 A~~l~~~~~~~~~~~ifK~--------sfdkaNRTS~~sfqG~G~eegL~~L------~~ik~~~gl~viTeVh~~~q~~ 101 (281)
T PRK12457 36 CGEYVEVTRKLGIPFVFKA--------SFDKANRSSIHSYRGVGLDEGLRIF------EEVKARFGVPVITDVHEVEQAA 101 (281)
T ss_pred HHHHHHHHHHCCCCEEECC--------CCCCCCCCCCCCCCCCCHHHHHHHH------HHHHHHHCCCEEEEECCHHHHH
T ss_conf 9999999997299878437--------7887768999777898889999999------9999987996799858888999
Q ss_pred ---------------CCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf ---------------5579998732003301220002345782168887506689999987543212589981688
Q gi|254780268|r 137 ---------------VYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYI 197 (443)
Q Consensus 137 ---------------~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlv 197 (443)
....+++..+.+.|-||.+|--...+ ++|+..+.+... +.|+.+|++
T Consensus 102 ~v~e~vDilQIpAr~~rqtdLL~a~~~t~kpV~lKkGq~~s---------~~e~~~aaeki~-----s~Gn~~vil 163 (281)
T PRK12457 102 PVAEVADVLQVPAFLARQTDLVVAIAKTGKPVNIKKPQFMS---------PTQMKHVVSKCR-----EAGNDRVIL 163 (281)
T ss_pred HHHHHHHHEEECHHHCCCCHHHHHHHHCCCEEEECCCCCCC---------HHHHHHHHHHHH-----HCCCCEEEE
T ss_conf 99865021234437502818999999739927955877699---------999999999999-----759984999
No 487
>PRK13127 consensus
Probab=36.45 E-value=31 Score=14.99 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCEE----ECCCCHHHCCHHHHHHHHHCCCEEEC-----CCHHHHHHHHC------------------
Q ss_conf 8999999987099899----45853131097666889845921626-----89899987218------------------
Q gi|254780268|r 63 IQQIVAACEVTGADAI----HPGYGFLSENAKFAEILEDHHIKFIG-----PSSEHIKIMGD------------------ 115 (443)
Q Consensus 63 i~~ii~~a~~~~~dai----hPGyGfLsEn~~fa~~~e~~Gi~fIG-----Ps~~ai~~~gD------------------ 115 (443)
++..++-|++.|+|++ .| .-|+.+|.+.|.++|+.+|= .+.+-|+....
T Consensus 104 ~e~F~~~~~~~GvdGlIipDLP----~eE~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~ 179 (262)
T PRK13127 104 VEKFVKKAAEAGVSGLIIPDLP----VEEATDLREACKKHGLDLVFLVAPTTPEERLKRIDEASSGFVYLVSRLGVTGAR 179 (262)
T ss_pred HHHHHHHHHHCCCCEEEECCCC----HHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 9999999987599769966999----789999999998558327998589998999999984389818998435556876
Q ss_pred -------HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf -------99887766422443324333455799987320
Q gi|254780268|r 116 -------KITAKKTAQQLGIPVVPGSGEVYPHTAMPIAK 147 (443)
Q Consensus 116 -------K~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~ 147 (443)
+...+++-+...+|++-|.+..+++++..+.+
T Consensus 180 ~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~ 218 (262)
T PRK13127 180 EDVEEATFDLLKRARTTCKNKIAVGFGISKGEHAEELLD 218 (262)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHH
T ss_conf 555288999999999617998489933488999999986
No 488
>PRK13115 consensus
Probab=36.41 E-value=31 Score=14.98 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEEC-----CCHHHHHHHHC----------------------
Q ss_conf 899999998709989945853131097666889845921626-----89899987218----------------------
Q gi|254780268|r 63 IQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIG-----PSSEHIKIMGD---------------------- 115 (443)
Q Consensus 63 i~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIG-----Ps~~ai~~~gD---------------------- 115 (443)
++.-++-|++.|+|++.--==.+-|..+|.+.|.++|+.+|- ++.+-|+..-.
T Consensus 116 ~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gi~~I~LvaPtt~~eRi~~i~~~a~GFIY~Vs~~GvTG~~~~~~ 195 (269)
T PRK13115 116 VDRFARDLAAAGGAGLITPDLIPDEAGEWLAASERHGLDRIFLVAPSSTPERLAETVEASRGFVYAASTMGVTGARDAVS 195 (269)
T ss_pred HHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
T ss_conf 99999999973998076478997899999999986581289985899988999999844888089975454567764441
Q ss_pred ---HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf ---99887766422443324333455799987320
Q gi|254780268|r 116 ---KITAKKTAQQLGIPVVPGSGEVYPHTAMPIAK 147 (443)
Q Consensus 116 ---K~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~ 147 (443)
+...+++=+...+|++-|.+..+++++..+.+
T Consensus 196 ~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~~~~~~~ 230 (269)
T PRK13115 196 SAAPELVARVRAASDIPVCVGLGVSSAAQAAEIAG 230 (269)
T ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHH
T ss_conf 77999999999717998179727899999999980
No 489
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.38 E-value=31 Score=14.98 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=0.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEE--
Q ss_conf 06866447099999999888809-659998585577187767585799918998530006989999999870998994--
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELG-IPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH-- 79 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elG-i~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daih-- 79 (443)
|||||.+=|.-..-+.|.+++.| -.++.++.+.+.......+.+....+.+.... .+-.++|.|.
T Consensus 9 kkv~V~GlG~sG~aaa~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~l~~~d~vv~S 76 (468)
T PRK04690 9 KRVALWGWGREGRAAYRALRAQLPAQPLTVFCNAEEVREVGALADAALLVETEASA------------QRLAAFEVVVKS 76 (468)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCCEEECCCCH------------HHHHCCCEEEEC
T ss_conf 97999834787999999999669904999728832464667620457567467785------------576148899989
Q ss_pred CCCCHHHCCHHHHHHHHHCCCEEEC
Q ss_conf 5853131097666889845921626
Q gi|254780268|r 80 PGYGFLSENAKFAEILEDHHIKFIG 104 (443)
Q Consensus 80 PGyGfLsEn~~fa~~~e~~Gi~fIG 104 (443)
||. +-+..+.+...+.|+.++|
T Consensus 77 PGi---~~~~p~~~~a~~~~i~i~~ 98 (468)
T PRK04690 77 PGI---SPYRPEALAAAAQGTPFIG 98 (468)
T ss_pred CCC---CCCCHHHHHHHHCCCCEEE
T ss_conf 957---9868999999987994886
No 490
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=36.35 E-value=31 Score=14.98 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=0.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 068664470999999998888096599985855
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAVHSTA 35 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v~s~~ 35 (443)
||++|.+-|-|++.....+..+|.++..+...+
T Consensus 176 k~v~ViGgG~ig~E~A~~~~~lG~~Vtii~~~~ 208 (464)
T PRK05976 176 KSLVVVGGGYIGLEWGSMLRKFGVEVTVVEAAD 208 (464)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 559998996899999999995398699998536
No 491
>PRK13116 consensus
Probab=36.30 E-value=31 Score=14.97 Aligned_cols=87 Identities=21% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHCC------HHHHHHHHHHCCCCEE----ECCCCHHHCCHHHHHHHHHCCCEEEC-----CCHHHHHHHHC--------
Q ss_conf 0069------8999999987099899----45853131097666889845921626-----89899987218--------
Q gi|254780268|r 59 SYLN------IQQIVAACEVTGADAI----HPGYGFLSENAKFAEILEDHHIKFIG-----PSSEHIKIMGD-------- 115 (443)
Q Consensus 59 sYld------i~~ii~~a~~~~~dai----hPGyGfLsEn~~fa~~~e~~Gi~fIG-----Ps~~ai~~~gD-------- 115 (443)
+|+| ++..++-|++.|+|++ .| +-|..+|...|.++|+.+|= ++.+-+...-.
T Consensus 101 ~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP----~eE~~~~~~~~~~~~i~~I~l~~ptt~~~ri~~I~~~s~GFiY~ 176 (278)
T PRK13116 101 IYGNVPFTRGLDRFYQEFAEAGADSILLPDVP----VREGAPFSAAAAAAGIDPIYIAPANASEKTLEGVSAASKGYIYA 176 (278)
T ss_pred ECCCHHHHCCHHHHHHHHHHCCCCEEEECCCC----HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEE
T ss_conf 05728877279999999977697589946999----78889999999865766699937999599999999718973999
Q ss_pred ------------------HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf ------------------9988776642244332433345579998732003
Q gi|254780268|r 116 ------------------KITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEI 149 (443)
Q Consensus 116 ------------------K~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~i 149 (443)
+..-+++=+...+|++-|.+..+++++.+.....
T Consensus 177 VS~~GvTG~~~~~~~~~l~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~~~~~ 228 (278)
T PRK13116 177 ISRDGVTGTERESSTDGLSAVVDNIKKFDGAPILLGFGISSPQHVADAIAAG 228 (278)
T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 8635222688666678999999999845799879981679899999998668
No 492
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=36.22 E-value=31 Score=14.96 Aligned_cols=98 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCC--------CEEEEECCC-HHHCCCCHHHCCEEEECCCCCCCC-------------HHC
Q ss_conf 6866447099999999888809--------659998585-577187767585799918998530-------------006
Q gi|254780268|r 4 KILIANRGEIALRILRACKELG--------IPTVAVHST-ADSGAMHVRLADESVCIGPPSSKD-------------SYL 61 (443)
Q Consensus 4 ~iLianrGeia~riira~~elG--------i~tv~v~s~-~D~~a~~~~~ADe~~~i~~~~~~~-------------sYl 61 (443)
||++.+=|.-..||+....+.+ .+++++||+ .|-.....--++.-+.||...... ..-
T Consensus 2 ri~vIGvGgAG~nivd~l~~~~~~~~~~~~~~~iAvNTd~~dL~~l~~~~a~~ki~iG~~~t~G~GaG~~pe~G~~aaee 81 (349)
T cd02202 2 RVLIIGVGQAGGRIVDALNRHDKRSGFGYCVGALAINTAKNDLKGLKHIPAEDRILIGQSEVKGHGVGADRELGAEVAEE 81 (349)
T ss_pred EEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 59999845602899999998376567665178999988899997554788110798266666788899985999999996
Q ss_pred CHHHHHHHHHH---CCCCEEEC--------CCCHHHCCHHHHHHHHHC-CCEEEC
Q ss_conf 98999999987---09989945--------853131097666889845-921626
Q gi|254780268|r 62 NIQQIVAACEV---TGADAIHP--------GYGFLSENAKFAEILEDH-HIKFIG 104 (443)
Q Consensus 62 di~~ii~~a~~---~~~daihP--------GyGfLsEn~~fa~~~e~~-Gi~fIG 104 (443)
|.+.|.+.... +.+|+++- |.|.. +-+|+.+.+. +++.+|
T Consensus 82 ~~~~I~~~l~~~~~~d~d~vfi~aG~GGGTGtgaa---pvia~~~~~~~~~~v~~ 133 (349)
T cd02202 82 DLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGA---PVLAKELKERYEEPVYA 133 (349)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCH---HHHHHHHHHHCCCCEEE
T ss_conf 49999999842476664579999446898777633---99999999825997799
No 493
>PRK06116 glutathione reductase; Validated
Probab=36.18 E-value=31 Score=14.96 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 068664470999999998888096599985855
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAVHSTA 35 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v~s~~ 35 (443)
++++|.+-|-|++.....+.++|.++..+...+
T Consensus 168 ~~v~IiGgG~ig~E~A~~~~~lG~~Vtlv~~~~ 200 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLHGLGSETHLFVRGD 200 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCEEEEEEECC
T ss_conf 779999996669999999996098489999448
No 494
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=35.94 E-value=31 Score=14.93 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=0.0
Q ss_pred CHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 012200023457821688875066899999875432125899816884
Q gi|254780268|r 151 FPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 151 yPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
|.-+.|+-..++|.=-..|++++||.++++.|+..+ +++++||
T Consensus 128 f~~~A~a~G~~~g~~g~rV~~~~el~~al~~Al~~~-----~~P~lie 170 (183)
T cd02005 128 YTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNR-----DKLSLIE 170 (183)
T ss_pred HHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCC-----CCEEEEE
T ss_conf 999999947866842899789999999999999728-----9829999
No 495
>pfam02775 TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
Probab=35.92 E-value=31 Score=14.93 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=0.0
Q ss_pred CCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 033012200023457821688875066899999875432125899816884
Q gi|254780268|r 148 EIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 (443)
Q Consensus 148 ~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE 198 (443)
....|=+.+=+.+-|..|.++ .+.+||.+++++|... +++.+||
T Consensus 106 ~~~~~d~~~lA~a~G~~~~~v-~~~~el~~al~~a~~~------~gP~~ie 149 (150)
T pfam02775 106 DLPPVDFAKLAEAYGAKGARV-ESPEELEEALKEALAH------DGPALID 149 (150)
T ss_pred CCCCCCHHHHHHHCCCEEEEE-CCHHHHHHHHHHHHHC------CCCEEEE
T ss_conf 888878999999859869997-8999999999999828------9998995
No 496
>PRK05942 aspartate aminotransferase; Provisional
Probab=35.91 E-value=31 Score=14.93 Aligned_cols=71 Identities=23% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHCCCEEECCC------HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCC
Q ss_conf 6688984592162689------8999872189988776642244332433345579998732003301220002345782
Q gi|254780268|r 91 FAEILEDHHIKFIGPS------SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGR 164 (443)
Q Consensus 91 fa~~~e~~Gi~fIGPs------~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~ 164 (443)
+.+.+.+.|+.+.-|. .+.-..+.+...+++++++.||-++||+ .+|-+|.
T Consensus 309 l~~~L~~~g~~~~~p~g~~y~w~~~~~~~~~~~f~~~ll~~~gV~v~PG~-----------------------~Fg~~g~ 365 (394)
T PRK05942 309 LIQGLGELGWDIPPTKATMYLWVPCPVGMGSTDFALNVLQKTGVVVTPGN-----------------------AFGEGGE 365 (394)
T ss_pred HHHHHHHCCCEECCCCEEEEEEEECCCCCCHHHHHHHHHHHCCEEEECCH-----------------------HHCCCCC
T ss_conf 99989876967537885889988689997989999999984999998873-----------------------1178999
Q ss_pred E---EEEEEECHHHHHHHHHHHH
Q ss_conf 1---6888750668999998754
Q gi|254780268|r 165 G---MRIAYSENDLSEAIDQARS 184 (443)
Q Consensus 165 G---i~vv~~~~el~~a~~~a~~ 184 (443)
| +..+.+.++|.+++++..+
T Consensus 366 ~~iRlsf~~~~~~l~ea~~Rl~~ 388 (394)
T PRK05942 366 GYVRISLIADCDRLGEALHRIKQ 388 (394)
T ss_pred CEEEEEEECCHHHHHHHHHHHHH
T ss_conf 87999971889999999999999
No 497
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=35.66 E-value=31 Score=14.90 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHC-----CCCEEECCCCHHHCCHHHHHHHHHCC----CEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCC
Q ss_conf 989999999870-----99899458531310976668898459----216268989998721899887766422443324
Q gi|254780268|r 62 NIQQIVAACEVT-----GADAIHPGYGFLSENAKFAEILEDHH----IKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVP 132 (443)
Q Consensus 62 di~~ii~~a~~~-----~~daihPGyGfLsEn~~fa~~~e~~G----i~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p 132 (443)
+++.++++...- ++..+.-|-| .+-..+.+..++.| +.|+|.- +......++..+.|=+.|
T Consensus 207 G~d~Li~A~~~l~~~~p~~~lvIvGdG--p~~~~L~~l~~~~~l~~~V~flG~v--------~~~~l~~~~~~aDvfv~P 276 (398)
T cd03796 207 GIDLLVGIIPEICKKHPNVRFIIGGDG--PKRILLEEMREKYNLQDRVELLGAV--------PHERVRDVLVQGHIFLNT 276 (398)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHHHHHHCCCCEEEECCCC--------CHHHHHHHHHHHHEEECC
T ss_conf 099999999999965899599993787--1189999999872336728975888--------567778888774421276
Q ss_pred CCCCCCHHHHHHHHHCCCCHHHHHCCCCCC-------CCEEEEEEECHHHHHHHHHHHH
Q ss_conf 333455799987320033012200023457-------8216888750668999998754
Q gi|254780268|r 133 GSGEVYPHTAMPIAKEIGFPVLVKASAGGG-------GRGMRIAYSENDLSEAIDQARS 184 (443)
Q Consensus 133 ~~~~~~~~ea~~~a~~iGyPviiKp~~gGG-------G~Gi~vv~~~~el~~a~~~a~~ 184 (443)
+....-.--++++. ..|-||+ +++.|| |.+.-...++++|.+++..+..
T Consensus 277 S~~Egfglv~lEAm-A~G~PVV--at~vgG~~Evv~~~~~~~~~~d~~~la~~l~~ll~ 332 (398)
T cd03796 277 SLTEAFCIAIVEAA-SCGLLVV--STRVGGIPEVLPPDMILLAEPDVESIVRKLEEAIS 332 (398)
T ss_pred CCCCCCCHHHHHHH-HCCCCEE--ECCCCCCCCEEECCCEEECCCCHHHHHHHHHHHHC
T ss_conf 54246667999999-8399899--88899861134189368748999999999999976
No 498
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=35.64 E-value=31 Score=14.90 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=0.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 06866447099999999888809659998
Q gi|254780268|r 3 SKILIANRGEIALRILRACKELGIPTVAV 31 (443)
Q Consensus 3 ~~iLianrGeia~riira~~elGi~tv~v 31 (443)
+++|+.+-||++--+++.+.+.|+..|.+
T Consensus 175 ~~vLvIGaGem~~l~~k~L~~~g~~~i~v 203 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGYSRITF 203 (338)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 86999866299999999998769997999
No 499
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=35.56 E-value=31 Score=14.89 Aligned_cols=77 Identities=10% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCC--------HHHCCCCHHHCCEEEE-CCCCCCCCHHCCHHHHHHHHH
Q ss_conf 9706866447099999999888809659998585--------5771877675857999-189985300069899999998
Q gi|254780268|r 1 MISKILIANRGEIALRILRACKELGIPTVAVHST--------ADSGAMHVRLADESVC-IGPPSSKDSYLNIQQIVAACE 71 (443)
Q Consensus 1 m~~~iLianrGeia~riira~~elGi~tv~v~s~--------~D~~a~~~~~ADe~~~-i~~~~~~~sYldi~~ii~~a~ 71 (443)
.+.+-..=++|.+. ++-..++++|++.+.|.++ -|..-.....+.-.+. .++..+.-++-++++.++.++
T Consensus 5 ~~~~~~~FG~g~l~-~l~~~~~~~G~k~~lvvtd~~~~k~g~~~~v~~~L~~~~i~~~vf~~v~pnP~~~~V~~~~~~~r 83 (381)
T PRK10624 5 ILNETAYFGRGAVG-ALTDEVKRRGYHKALIVTDKTLVQCGVVAKVTDKLDAAGLAYEIYDGVKPNPTISVVKEGLEVFQ 83 (381)
T ss_pred ECCCCEEECCCHHH-HHHHHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 37987589976999-99999997499879999696545563699999999876983999889258989999999999998
Q ss_pred HCCCCEE
Q ss_conf 7099899
Q gi|254780268|r 72 VTGADAI 78 (443)
Q Consensus 72 ~~~~dai 78 (443)
+.++|.|
T Consensus 84 ~~~~D~I 90 (381)
T PRK10624 84 ASGADYL 90 (381)
T ss_pred HCCCCEE
T ss_conf 6499989
No 500
>TIGR02022 hutF formiminoglutamate deiminase; InterPro: IPR010252 In some species, histidine utilisation goes via urocanate to glutamate in four step, the last being removal of formamide. This entry describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (IPR010247 from INTERPRO) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by ) would yield glutamate..
Probab=35.55 E-value=25 Score=15.60 Aligned_cols=19 Identities=42% Similarity=0.552 Sum_probs=0.0
Q ss_pred ECCCHHHHHHHHHHHHCCC
Q ss_conf 4470999999998888096
Q gi|254780268|r 8 ANRGEIALRILRACKELGI 26 (443)
Q Consensus 8 anrGeia~riira~~elGi 26 (443)
||.+|.+-||++||++-||
T Consensus 136 Ad~~em~~ri~~AA~~~Gi 154 (466)
T TIGR02022 136 ADPAEMAERIAAAAADAGI 154 (466)
T ss_pred CCHHHHHHHHHHHHHHHCC
T ss_conf 7778999999999986077
Done!