Query         gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 443
No_of_seqs    236 out of 5391
Neff          6.1 
Searched_HMMs 39220
Date          Tue May 24 17:31:36 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780268.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR00514 accC acetyl-CoA carb 100.0       0       0 1387.3  29.8  441    1-441     1-447 (451)
  2 TIGR02712 urea_carbox urea car 100.0       0       0 1307.6  30.0  438    2-439     1-450 (1226)
  3 TIGR01235 pyruv_carbox pyruvat 100.0       0       0 1295.6  27.8  437    4-440     1-456 (1169)
  4 PRK08591 acetyl-CoA carboxylas 100.0       0       0 1247.5  42.1  442    1-442     1-444 (449)
  5 PRK12999 pyruvate carboxylase; 100.0       0       0 1244.8  36.3  440    1-440     4-455 (1147)
  6 COG4770 Acetyl/propionyl-CoA c 100.0       0       0 1247.7  28.0  443    1-443     1-447 (645)
  7 PRK06111 acetyl-CoA carboxylas 100.0       0       0 1230.5  39.0  443    1-443     1-446 (449)
  8 PRK08654 pyruvate carboxylase  100.0       0       0 1228.6  39.9  440    1-440     1-443 (497)
  9 PRK07178 acetyl-CoA carboxylas 100.0       0       0 1221.4  38.7  440    1-441     1-443 (471)
 10 PRK05586 biotin carboxylase; V 100.0       0       0 1219.2  39.1  442    1-442     1-446 (447)
 11 PRK08463 acetyl-CoA carboxylas 100.0       0       0 1221.4  37.3  442    1-443     1-447 (478)
 12 PRK08462 biotin carboxylase; V 100.0       0       0 1203.4  39.6  440    1-441     3-446 (446)
 13 PRK12833 acetyl-CoA carboxylas 100.0       0       0 1204.1  38.4  441    2-443     5-450 (458)
 14 KOG0238 consensus              100.0       0       0 1167.8  28.5  439    5-443     1-444 (670)
 15 COG1038 PycA Pyruvate carboxyl 100.0       0       0 1113.1  31.0  440    1-440     6-457 (1149)
 16 COG0439 AccC Biotin carboxylas 100.0       0       0 1007.1  37.2  442    1-442     1-446 (449)
 17 KOG0369 consensus              100.0       0       0 1018.3  28.2  439    2-440    33-480 (1176)
 18 KOG0368 consensus              100.0       0       0  817.0  29.1  439    1-443    53-553 (2196)
 19 TIGR01369 CPSaseII_lrg carbamo 100.0       0       0  534.1  24.3  373    2-411     6-407 (1089)
 20 TIGR01369 CPSaseII_lrg carbamo 100.0       0       0  450.7  23.2  370    3-429   574-986 (1089)
 21 PRK12815 carB carbamoyl phosph 100.0       0       0  432.6  29.3  388    2-426     7-429 (1068)
 22 PRK05294 carB carbamoyl phosph 100.0       0       0  432.4  29.3  390    2-426     7-427 (1063)
 23 PRK05294 carB carbamoyl phosph 100.0       0       0  400.5  25.8  298    3-321   554-871 (1063)
 24 PRK12815 carB carbamoyl phosph 100.0       0       0  393.7  27.9  295    3-321   555-869 (1068)
 25 pfam02786 CPSase_L_D2 Carbamoy 100.0       0       0  382.8  16.5  206  115-320     1-210 (211)
 26 PRK09288 purT phosphoribosylgl 100.0       0       0  360.4  31.7  379    2-410    12-394 (395)
 27 COG0458 CarB Carbamoylphosphat 100.0       0       0  355.4  26.0  361   14-410    18-393 (400)
 28 PRK12767 carbamoyl phosphate s 100.0   4E-42       0  319.5  25.0  289    2-318     1-296 (325)
 29 KOG0370 consensus              100.0 3.1E-43       0  327.5  11.1  380    2-421   377-784 (1435)
 30 PRK06019 phosphoribosylaminoim 100.0 1.3E-35 3.4E-40  273.3  29.7  362    2-410     7-375 (377)
 31 TIGR01205 D_ala_D_alaTIGR D-al 100.0 6.1E-36 1.5E-40  275.7  18.6  251   14-289    20-343 (375)
 32 PRK02186 argininosuccinate lya 100.0 2.3E-33 5.8E-38  257.4  28.8  362    8-403    10-393 (892)
 33 PRK01372 ddl D-alanine--D-alan 100.0 8.5E-35 2.2E-39  267.5  21.1  246    1-289     3-269 (304)
 34 KOG0370 consensus              100.0 2.4E-35 6.2E-40  271.4  15.4  356    4-397   920-1313(1435)
 35 COG0027 PurT Formate-dependent 100.0 1.9E-32   5E-37  250.8  27.1  366    3-410    13-394 (394)
 36 pfam00289 CPSase_L_chain Carba 100.0 7.7E-36   2E-40  274.9   9.6  109    2-110     1-109 (109)
 37 pfam02785 Biotin_carb_C Biotin 100.0 4.1E-36   1E-40  276.9   4.9  106  333-438     1-107 (107)
 38 PRK01966 ddl D-alanyl-alanine  100.0 3.3E-32 8.4E-37  249.1  19.1  275    2-289     3-311 (344)
 39 smart00878 Biotin_carb_C Bioti 100.0 6.2E-35 1.6E-39  268.5   4.5  106  333-438     1-107 (107)
 40 TIGR01161 purK phosphoribosyla 100.0 2.9E-31 7.5E-36  242.4  22.5  263    4-291     1-286 (386)
 41 PRK07206 hypothetical protein; 100.0 6.9E-29 1.8E-33  225.6  26.2  390    1-410     1-410 (415)
 42 COG0026 PurK Phosphoribosylami 100.0 8.6E-29 2.2E-33  224.9  24.3  293    2-320     1-297 (375)
 43 PRK13789 phosphoribosylamine-- 100.0 5.6E-27 1.4E-31  212.0  28.6  374    4-410     6-414 (426)
 44 PRK13790 phosphoribosylamine-- 100.0 1.1E-26 2.8E-31  210.0  26.2  371    4-411     2-401 (415)
 45 PRK00885 phosphoribosylamine-- 100.0 2.1E-25 5.2E-30  200.9  30.1  375    4-410     2-407 (424)
 46 pfam01071 GARS_A Phosphoribosy 100.0 8.7E-28 2.2E-32  217.7  15.4  174  114-291     1-189 (193)
 47 pfam02222 ATP-grasp ATP-grasp  100.0 3.3E-28 8.5E-33  220.7  13.2  162  123-294     1-164 (171)
 48 COG0151 PurD Phosphoribosylami 100.0 3.7E-25 9.3E-30  199.1  26.9  373    4-411     2-412 (428)
 49 pfam07478 Dala_Dala_lig_C D-al  99.9 1.5E-27 3.9E-32  216.0  11.3  162  122-291     1-174 (201)
 50 PRK05784 phosphoribosylamine--  99.9 1.2E-23 3.1E-28  188.3  27.8  373    4-410     2-432 (485)
 51 PRK06395 phosphoribosylamine--  99.9 1.4E-23 3.7E-28  187.8  27.1  364    1-407     1-408 (435)
 52 COG1181 DdlA D-alanine-D-alani  99.9   1E-24 2.5E-29  196.0  17.1  248   14-292    23-288 (317)
 53 TIGR00877 purD phosphoribosyla  99.9 6.2E-23 1.6E-27  183.3  18.4  374    4-411     2-447 (459)
 54 pfam08443 RimK RimK-like ATP-g  99.9 2.7E-23 6.8E-28  185.9  14.7  179  113-309     1-186 (190)
 55 PRK06849 hypothetical protein;  99.9 1.5E-20 3.9E-25  166.3  20.9  279    3-313     5-290 (387)
 56 pfam02655 ATP-grasp_3 ATP-gras  99.9 2.2E-21 5.7E-26  172.2  10.9  156  113-292     1-159 (160)
 57 PRK10446 ribosomal protein S6   99.9 2.4E-19 6.1E-24  157.8  20.2  272    4-312     2-285 (300)
 58 COG2232 Predicted ATP-dependen  99.9 1.8E-19 4.6E-24  158.7  19.4  339    3-404    12-370 (389)
 59 KOG0237 consensus               99.8 5.2E-18 1.3E-22  148.3  24.2  384    1-418     1-425 (788)
 60 TIGR00768 rimK_fam alpha-L-glu  99.8 9.8E-19 2.5E-23  153.4  18.5  270   12-312    18-320 (321)
 61 TIGR02144 LysX_arch Lysine bio  99.8 2.8E-19 7.1E-24  157.3  14.3  247   17-314    15-284 (289)
 62 TIGR01142 purT phosphoribosylg  99.8   3E-17 7.7E-22  142.8  19.2  378    4-408     1-406 (407)
 63 COG0189 RimK Glutathione synth  99.7 5.6E-16 1.4E-20  133.9  17.9  274   15-312    20-310 (318)
 64 TIGR03103 trio_acet_GNAT GNAT-  99.7 1.2E-16 3.1E-21  138.6  13.0  261    4-290   195-522 (547)
 65 TIGR02068 cya_phycin_syn cyano  99.7 1.5E-17 3.9E-22  144.9   6.7  156   46-225   157-322 (876)
 66 PRK02471 bifunctional glutamat  99.4 2.2E-12 5.6E-17  108.4  11.4  213   61-290   433-727 (753)
 67 PRK06524 biotin carboxylase-li  99.4 2.3E-12 5.8E-17  108.2  11.3  229   62-302    78-321 (480)
 68 COG1821 Predicted ATP-utilizin  99.4 1.5E-12 3.8E-17  109.5  10.3  185   63-291    63-257 (307)
 69 COG3919 Predicted ATP-grasp en  99.3 9.7E-11 2.5E-15   96.6  14.9  271   17-317    18-314 (415)
 70 PRK13278 purP 5-formaminoimida  99.2 4.3E-09 1.1E-13   84.9  15.9  256   12-291    27-311 (356)
 71 PRK13277 5-formaminoimidazole-  99.1 3.3E-08 8.5E-13   78.6  17.7  256   12-291    23-317 (363)
 72 COG1759 5-formaminoimidazole-4  99.0 1.5E-07 3.9E-12   73.9  16.3  252   13-291    28-316 (361)
 73 pfam08442 ATP-grasp_2 ATP-gras  98.9 3.7E-09 9.4E-14   85.4   6.1  164  117-289     5-200 (202)
 74 PRK00696 sucC succinyl-CoA syn  98.7 8.6E-08 2.2E-12   75.7   8.3  103  117-219     6-120 (388)
 75 COG0045 SucC Succinyl-CoA synt  98.7 4.2E-08 1.1E-12   77.9   6.0  167  117-290     6-200 (387)
 76 TIGR01016 sucCoAbeta succinyl-  98.6   2E-07 5.2E-12   73.1   8.2  178  117-315     6-219 (389)
 77 PRK05246 glutathione synthetas  98.3 1.9E-05 4.9E-10   59.0  11.5  265   11-310    18-306 (316)
 78 pfam02955 GSH-S_ATP Prokaryoti  98.3 1.8E-05 4.6E-10   59.2  10.9  141  131-288    13-160 (176)
 79 TIGR02291 rimK_rel_E_lig alpha  98.2 3.8E-05 9.7E-10   56.9  11.9  193  114-336    36-293 (320)
 80 pfam05770 Ins134_P3_kin Inosit  97.4  0.0044 1.1E-07   42.3  11.4  173   98-288    77-287 (307)
 81 PRK12458 glutathione synthetas  97.4 0.00094 2.4E-08   47.0   7.9  195   93-311   114-325 (349)
 82 pfam11379 DUF3182 Protein of u  97.4 0.00031 7.9E-09   50.4   5.1  162   23-209    29-192 (355)
 83 pfam03133 TTL Tubulin-tyrosine  96.9   0.013 3.4E-07   38.9   9.0   44  150-204    66-109 (291)
 84 KOG3895 consensus               96.6   0.027 6.9E-07   36.7   8.9  202   70-289   151-366 (488)
 85 pfam02844 GARS_N Phosphoribosy  96.4   0.053 1.3E-06   34.6   9.8   93    4-112     1-98  (99)
 86 pfam02750 Synapsin_C Synapsin,  96.4   0.046 1.2E-06   35.0   9.5  149  124-289    27-177 (203)
 87 pfam06849 DUF1246 Protein of u  95.8   0.062 1.6E-06   34.1   7.6  109   13-132     8-121 (124)
 88 TIGR01380 glut_syn glutathione  95.7   0.019 4.7E-07   37.8   4.6  246   15-307    21-312 (322)
 89 PRK06241 phosphoenolpyruvate s  95.6    0.11 2.8E-06   32.3   8.2   45  242-288   263-307 (870)
 90 PRK06988 putative formyltransf  93.6    0.19 4.8E-06   30.7   5.3   39    1-39      1-39  (313)
 91 COG1748 LYS9 Saccharopine dehy  93.4    0.75 1.9E-05   26.4   9.0  164    2-180     1-179 (389)
 92 PRK09248 putative hydrolase; V  93.3    0.36 9.2E-06   28.7   6.4   16   16-31     23-38  (246)
 93 PRK00912 ribonuclease P protei  93.2    0.25 6.3E-06   29.8   5.4  140   13-157    20-177 (237)
 94 CHL00194 ycf39 Ycf39; Provisio  93.1    0.84 2.1E-05   26.1  12.4  169    4-185     2-192 (319)
 95 cd01968 Nitrogenase_NifE_I Nit  93.1    0.76 1.9E-05   26.4   7.8   15   64-78     76-90  (410)
 96 pfam09370 TIM-br_sig_trns TIM-  92.5    0.95 2.4E-05   25.7   7.7  113   56-184    90-206 (268)
 97 KOG2799 consensus               92.5    0.45 1.1E-05   28.0   6.0   72  111-182    21-105 (434)
 98 TIGR01241 FtsH_fam ATP-depende  92.4    0.09 2.3E-06   33.0   2.2   94   98-238    93-189 (505)
 99 cd06451 AGAT_like Alanine-glyo  92.2    0.89 2.3E-05   25.9   7.2   59  348-406   290-354 (356)
100 TIGR01285 nifN nitrogenase mol  91.5     1.1 2.9E-05   25.2   7.0  140  115-266   164-328 (451)
101 KOG2157 consensus               91.4    0.65 1.7E-05   26.9   5.7   53  150-204   199-252 (497)
102 PRK10124 putative UDP-glucose   91.1     1.4 3.6E-05   24.5   8.1  113    2-135   144-263 (464)
103 cd01990 Alpha_ANH_like_I This   91.0     1.4 3.5E-05   24.5   7.1  120   11-170    39-163 (202)
104 cd01976 Nitrogenase_MoFe_alpha  90.8     1.2   3E-05   25.1   6.6   16  118-133   121-136 (421)
105 cd01965 Nitrogenase_MoFe_beta_  90.7     1.5 3.7E-05   24.4   7.0   16   63-78     70-85  (428)
106 PRK09195 gatY tagatose-bisphos  90.1     1.7 4.3E-05   23.9  10.3   75   60-158    28-106 (284)
107 COG2099 CobK Precorrin-6x redu  89.7     1.8 4.7E-05   23.7   8.3  120    1-150     1-128 (257)
108 COG0821 gcpE 1-hydroxy-2-methy  89.6     1.2   3E-05   25.0   5.8  210   15-277    39-264 (361)
109 cd03466 Nitrogenase_NifN_2 Nit  89.5     1.4 3.5E-05   24.6   6.1   17   63-79     73-89  (429)
110 TIGR01182 eda 2-dehydro-3-deox  89.4     1.9 4.9E-05   23.5   9.2   88    5-103    13-106 (205)
111 TIGR00268 TIGR00268 conserved   88.6     1.7 4.3E-05   23.9   6.0  132    3-161    16-175 (263)
112 pfam05690 ThiG Thiazole biosyn  88.5     2.2 5.6E-05   23.1   7.2   72  120-205   115-187 (246)
113 TIGR03190 benz_CoA_bzdN benzoy  88.5    0.97 2.5E-05   25.6   4.7   16  396-411   302-317 (377)
114 TIGR03023 WcaJ_sugtrans Undeca  88.4     2.2 5.7E-05   23.1   8.2   88    3-102   129-221 (451)
115 COG0800 Eda 2-keto-3-deoxy-6-p  88.3     2.3 5.7E-05   23.0   6.6   27    5-31     18-44  (211)
116 PRK13114 consensus              88.1     2.3 5.9E-05   22.9   6.9  174   12-207    27-216 (266)
117 PRK00208 thiG thiazole synthas  87.6     2.5 6.4E-05   22.7   6.9   74  118-205   115-189 (256)
118 TIGR01326 OAH_OAS_sulfhy O-ace  87.1     1.6 4.1E-05   24.1   5.1   63   17-79    113-180 (434)
119 pfam01820 Dala_Dala_lig_N D-al  87.0    0.45 1.1E-05   28.0   2.3   86   14-105    21-110 (110)
120 TIGR01435 glu_cys_lig_rel puta  86.8    0.74 1.9E-05   26.5   3.3   98  111-215   486-588 (754)
121 PRK03659 glutathione-regulated  86.8     2.2 5.6E-05   23.1   5.7   36  383-418   492-527 (602)
122 PRK07525 sulfoacetaldehyde ace  86.7     2.8 7.1E-05   22.4   8.9   31  166-198   130-160 (589)
123 cd01076 NAD_bind_1_Glu_DH NAD(  86.4     2.9 7.4E-05   22.3   7.5   67    3-86     32-98  (227)
124 KOG1447 consensus               85.8     3.1 7.8E-05   22.1   8.9  103  116-218    24-145 (412)
125 cd01974 Nitrogenase_MoFe_beta   85.8     3.1 7.9E-05   22.1   6.3   17   63-79     74-90  (435)
126 TIGR03234 OH-pyruv-isom hydrox  85.6     1.1 2.9E-05   25.2   3.7   21  256-276   222-242 (254)
127 cd04728 ThiG Thiazole synthase  85.4     3.2 8.2E-05   21.9   6.8   75  118-206   114-189 (248)
128 CHL00162 thiG thiamin biosynth  84.9     3.4 8.6E-05   21.8   6.9   72  119-204   129-201 (267)
129 PRK04165 acetyl-CoA decarbonyl  84.5     3.5 8.9E-05   21.7   7.6   29  129-157   180-208 (454)
130 pfam01081 Aldolase KDPG and KH  83.9     3.7 9.4E-05   21.5   6.7  109    5-152    13-123 (196)
131 PRK11840 bifunctional sulfur c  83.8     3.7 9.5E-05   21.5   7.3   20   59-78     93-112 (327)
132 PRK03562 glutathione-regulated  83.7     2.8 7.1E-05   22.4   5.0   18  384-401   492-509 (615)
133 PRK00509 argininosuccinate syn  83.6     3.8 9.7E-05   21.4   8.3   34    1-34      1-36  (398)
134 cd05145 RIO1_like RIO kinase f  83.3     3.9   1E-04   21.3   5.8   56  246-301   119-176 (190)
135 PRK09259 putative oxalyl-CoA d  82.8     4.1  0.0001   21.2   9.3  130   63-198    16-170 (572)
136 PRK13209 L-xylulose 5-phosphat  82.8     1.6   4E-05   24.2   3.5   18   61-78     21-38  (283)
137 cd01967 Nitrogenase_MoFe_alpha  82.4     4.2 0.00011   21.1   7.4   17  114-130   173-189 (406)
138 PRK08329 threonine synthase; V  82.4     4.2 0.00011   21.1   6.1   32   96-127   172-203 (348)
139 cd00452 KDPG_aldolase KDPG and  82.3     4.3 0.00011   21.1   7.4  101    5-145     9-113 (190)
140 TIGR01514 NAPRTase nicotinate   81.6     1.4 3.5E-05   24.5   2.8   89  328-416   256-365 (430)
141 COG1810 Uncharacterized protei  81.0     4.7 0.00012   20.8   5.8  124    2-155     1-139 (224)
142 PRK05638 threonine synthase; V  80.4     4.9 0.00013   20.6   8.5   31   97-127   182-212 (443)
143 PRK09496 trkA potassium transp  80.1       5 0.00013   20.5   6.8   69    4-79      2-70  (455)
144 PRK08904 consensus              79.7     5.2 0.00013   20.5   7.2  120    5-163    15-137 (207)
145 TIGR03025 EPS_sugtrans exopoly  79.6     5.2 0.00013   20.4   8.7   87    3-102   126-218 (445)
146 PRK09997 hydroxypyruvate isome  79.6     5.2 0.00013   20.4   7.9   23  255-277   222-244 (258)
147 PRK02645 ppnK inorganic polyph  79.5     5.2 0.00013   20.4   7.2   31    2-32      3-39  (304)
148 cd02006 TPP_Gcl Thiamine pyrop  79.5     3.1 7.9E-05   22.0   4.1   48  153-203   148-195 (202)
149 PRK07710 acetolactate synthase  79.1     5.4 0.00014   20.3   9.0  131   63-199    19-172 (571)
150 PRK06552 keto-hydroxyglutarate  79.0     5.4 0.00014   20.3   8.5   27    5-31     18-44  (209)
151 PRK13210 putative L-xylulose 5  79.0       4  0.0001   21.3   4.5   21  257-277   238-258 (284)
152 PRK08401 L-aspartate oxidase;   79.0     4.5 0.00011   20.9   4.8   35    2-36      1-35  (464)
153 PRK13820 argininosuccinate syn  78.9     5.4 0.00014   20.3   7.1   21   59-79     95-115 (395)
154 PRK00045 hemA glutamyl-tRNA re  78.9     5.5 0.00014   20.3   9.2   11  393-403   374-384 (429)
155 PRK13122 consensus              78.1     5.7 0.00015   20.1   7.6  173   12-206    13-200 (242)
156 COG2100 Predicted Fe-S oxidore  77.9     5.8 0.00015   20.1   8.4   96   90-203   205-300 (414)
157 TIGR02311 HpaI 2,4-dihydroxyhe  77.7     3.7 9.3E-05   21.5   4.0   73    8-82     93-171 (249)
158 pfam01326 PPDK_N Pyruvate phos  77.3       6 0.00015   20.0   5.8   45  242-288   257-301 (327)
159 pfam00148 Oxidored_nitro Nitro  76.9     6.2 0.00016   19.9   7.5   17  114-130   159-175 (398)
160 PRK07502 cyclohexadienyl dehyd  76.9     5.8 0.00015   20.1   4.8   34    1-34      5-40  (307)
161 pfam02571 CbiJ Precorrin-6x re  76.9     6.2 0.00016   19.9   7.6  121    4-150     2-127 (246)
162 PTZ00081 enolase (2-phospho-D-  76.6     6.3 0.00016   19.9   5.2   20  385-404   401-421 (442)
163 KOG2270 consensus               76.5     6.3 0.00016   19.8   5.8   50  248-297   268-319 (520)
164 PRK05718 keto-hydroxyglutarate  76.3     6.4 0.00016   19.8   7.2  121    5-163    20-142 (212)
165 pfam05368 NmrA NmrA-like famil  76.2     6.4 0.00016   19.8  12.7   92    5-105     1-100 (232)
166 PRK08104 consensus              76.1     6.5 0.00017   19.8   7.3  120    5-163    20-142 (212)
167 PRK07455 keto-hydroxyglutarate  76.0     6.5 0.00017   19.7   7.8  107    5-152    18-128 (210)
168 PRK00005 fmt methionyl-tRNA fo  75.8     4.6 0.00012   20.8   4.1   37    4-40      2-38  (309)
169 PRK07053 glutamine amidotransf  75.6     6.7 0.00017   19.7   5.6   89    1-108     1-92  (235)
170 pfam00208 ELFV_dehydrog Glutam  75.4     6.7 0.00017   19.6   7.7   57    3-76     33-89  (237)
171 COG1064 AdhP Zn-dependent alco  75.2     6.8 0.00017   19.6  10.2   46    4-49    169-215 (339)
172 PRK09989 hypothetical protein;  75.1     6.9 0.00017   19.6   7.1   22  256-277   223-244 (258)
173 TIGR03451 mycoS_dep_FDH mycoth  74.9     6.9 0.00018   19.6   9.6   11  348-358   269-279 (358)
174 COG1718 RIO1 Serine/threonine   74.8     4.9 0.00013   20.6   4.0   54  247-300   169-224 (268)
175 TIGR02776 NHEJ_ligase_prk DNA   74.6     6.4 0.00016   19.8   4.5   59  236-307   486-545 (645)
176 PRK05265 pyridoxine 5'-phospha  74.6     6.6 0.00017   19.7   4.6  104   15-135    27-155 (240)
177 TIGR03457 sulphoacet_xsc sulfo  74.3     7.2 0.00018   19.4   9.5   30  167-198   127-156 (579)
178 PRK05396 tdh L-threonine 3-deh  74.2     7.2 0.00018   19.4  10.3   14  346-359   254-267 (341)
179 cd00003 PNPsynthase Pyridoxine  74.2     7.2 0.00018   19.4   4.8  103   15-134    24-151 (234)
180 TIGR02643 T_phosphoryl thymidi  74.2     7.2 0.00018   19.4   5.1   99   74-181   125-247 (440)
181 TIGR03499 FlhF flagellar biosy  73.8     6.8 0.00017   19.6   4.5   37  385-421   229-267 (282)
182 TIGR02053 MerA mercuric reduct  73.5     3.9 9.9E-05   21.4   3.2  240  116-404   166-453 (494)
183 PRK08782 consensus              73.4     7.5 0.00019   19.3   8.5  120    5-163    22-144 (219)
184 pfam01488 Shikimate_DH Shikima  73.0     6.5 0.00016   19.8   4.2   30    3-32     13-42  (134)
185 PRK09260 3-hydroxybutyryl-CoA   72.9     7.7  0.0002   19.2   4.8   37    1-37      1-37  (289)
186 TIGR03127 RuMP_HxlB 6-phospho   72.0     7.9  0.0002   19.2   4.5   16   63-78     88-103 (179)
187 PRK11269 glyoxylate carboligas  71.7     6.1 0.00016   20.0   3.9   15  140-154   221-235 (591)
188 PRK05481 lipoyl synthase; Prov  71.3     3.9 9.9E-05   21.3   2.8   53  141-203   184-236 (289)
189 cd05119 RIO RIO kinase family,  71.2     8.4 0.00021   19.0   5.7   56  246-301   116-173 (187)
190 COG0445 GidA Flavin-dependent   71.0     8.5 0.00022   18.9   4.8   98    4-126     6-109 (621)
191 TIGR01702 CO_DH_cata carbon-mo  70.8     6.3 0.00016   19.9   3.8   17   61-77    113-129 (647)
192 COG1181 DdlA D-alanine-D-alani  70.4    0.34 8.8E-06   28.8  -2.8  131   59-218    19-154 (317)
193 TIGR03254 oxalate_oxc oxalyl-C  70.2     8.8 0.00022   18.8   8.6   32  166-198   129-160 (554)
194 TIGR01828 pyru_phos_dikin pyru  70.1     8.2 0.00021   19.1   4.2  204   43-290   107-361 (920)
195 COG0223 Fmt Methionyl-tRNA for  69.8     6.2 0.00016   19.9   3.6   39    2-40      1-39  (307)
196 TIGR01283 nifE nitrogenase MoF  69.8       9 0.00023   18.8   6.8   38  119-156   271-311 (470)
197 TIGR00692 tdh L-threonine 3-de  69.8       6 0.00015   20.0   3.5   29    3-31    163-191 (341)
198 PRK06015 keto-hydroxyglutarate  69.6     9.1 0.00023   18.7   8.6  107    5-152    20-130 (212)
199 PRK13111 trpA tryptophan synth  69.5     9.1 0.00023   18.7   8.1  217   12-264    23-254 (256)
200 pfam00899 ThiF ThiF family. Th  69.3     6.5 0.00017   19.7   3.6  117    3-134     2-123 (134)
201 PRK11302 DNA-binding transcrip  69.3     9.2 0.00023   18.7   5.4   10   18-27     52-61  (284)
202 cd05005 SIS_PHI Hexulose-6-pho  69.1     9.3 0.00024   18.7   4.4   12  173-184    89-100 (179)
203 TIGR03542 DAPAT_plant LL-diami  68.7     6.3 0.00016   19.8   3.4   13  391-403   390-402 (402)
204 pfam03599 CdhD CO dehydrogenas  68.6     9.5 0.00024   18.6   7.3   61   89-158    82-150 (384)
205 PRK06895 para-aminobenzoate sy  68.6     9.5 0.00024   18.6   5.8   32    1-32      1-33  (191)
206 TIGR01316 gltA glutamate synth  68.5       7 0.00018   19.5   3.6  184    3-222   143-358 (462)
207 PRK06801 hypothetical protein;  68.5     9.5 0.00024   18.6  11.7   75   61-159    29-107 (286)
208 TIGR01361 DAHP_synth_Bsub phos  68.3     6.4 0.00016   19.8   3.4   52  140-203   122-173 (262)
209 PRK09140 2-dehydro-3-deoxy-6-p  68.1     9.7 0.00025   18.5   9.4  107    6-152    16-126 (206)
210 PRK12928 lipoyl synthase; Prov  67.9     5.7 0.00015   20.2   3.0   13  170-182   216-228 (290)
211 PRK05703 flhF flagellar biosyn  67.9     9.8 0.00025   18.5   4.7   16  166-181   270-285 (412)
212 TIGR02015 BchY chlorophyllide   67.4      10 0.00026   18.4   4.6   65  326-401   336-406 (426)
213 PRK13361 molybdenum cofactor b  67.2      10 0.00026   18.4   8.8  126   15-185    51-182 (329)
214 pfam00070 Pyr_redox Pyridine n  67.2     9.9 0.00025   18.5   4.2   29    4-32      1-29  (82)
215 cd07039 TPP_PYR_POX Pyrimidine  67.0      10 0.00026   18.4   9.3   44  149-198   112-155 (164)
216 TIGR01124 ilvA_2Cterm threonin  66.8     7.2 0.00018   19.4   3.4   62   17-105    82-144 (508)
217 cd05565 PTS_IIB_lactose PTS_II  66.8      10 0.00026   18.3   6.7   77   58-146    13-97  (99)
218 PRK07979 acetolactate synthase  66.3     8.8 0.00022   18.8   3.7   30  168-198   131-160 (574)
219 TIGR03470 HpnH hopanoid biosyn  66.2      11 0.00027   18.3   9.3   99   60-183    86-188 (318)
220 TIGR02720 pyruv_oxi_spxB pyruv  66.0      11 0.00027   18.2   5.0   88   63-156   138-232 (577)
221 pfam02254 TrkA_N TrkA-N domain  65.7      11 0.00027   18.2   6.1   67    5-80      1-67  (115)
222 PRK10669 putative cation:proto  65.6      11 0.00028   18.2   9.4   13  384-396   510-522 (558)
223 PRK05878 pyruvate phosphate di  65.6      11 0.00028   18.2   4.5   37  247-285   256-292 (529)
224 cd05014 SIS_Kpsf KpsF-like pro  65.3      11 0.00028   18.2   4.4   72    4-79      2-79  (128)
225 COG1488 PncB Nicotinic acid ph  65.3     1.9 4.9E-05   23.5   0.2   58  359-416   264-327 (405)
226 cd02010 TPP_ALS Thiamine pyrop  64.7     9.8 0.00025   18.5   3.7   47  151-204   126-172 (177)
227 TIGR00693 thiE thiamine-phosph  64.7      11 0.00029   18.1   5.6   84   67-154    75-170 (210)
228 PRK07226 fructose-bisphosphate  64.7     4.1  0.0001   21.2   1.8   38   46-86     27-64  (266)
229 pfam06973 DUF1297 Domain of un  64.6      11 0.00029   18.1   5.3   50  241-291    87-143 (188)
230 COG5564 Predicted TIM-barrel e  64.5      11 0.00029   18.1   6.8  118   58-191    98-219 (276)
231 PRK07418 acetolactate synthase  64.5     9.8 0.00025   18.5   3.7   31  167-198   148-178 (615)
232 COG2022 ThiG Uncharacterized e  64.4      11 0.00029   18.0   8.4   18   60-77     26-43  (262)
233 smart00090 RIO RIO-like kinase  64.2      11 0.00029   18.0   5.5   55  247-301   151-207 (237)
234 PRK03202 6-phosphofructokinase  64.0      12 0.00029   18.0   7.4   36    1-36      1-43  (323)
235 COG0647 NagD Predicted sugar p  63.9      12  0.0003   18.0   6.4   67   79-148    20-87  (269)
236 PRK05568 flavodoxin; Provision  63.7      12  0.0003   18.0   8.6  102    2-105     1-116 (142)
237 COG0794 GutQ Predicted sugar p  63.7      12  0.0003   17.9   4.8   18   14-31     54-71  (202)
238 PRK03369 murD UDP-N-acetylmura  63.7      12  0.0003   17.9   7.4   87    3-104    13-99  (487)
239 PRK05370 argininosuccinate syn  63.6      12  0.0003   17.9   6.4   30    3-32     12-42  (447)
240 cd01018 ZntC Metal binding pro  63.6     9.5 0.00024   18.6   3.5   32   51-84     30-62  (266)
241 pfam02776 TPP_enzyme_N Thiamin  63.6      12  0.0003   17.9   9.4   35  163-198   124-158 (172)
242 TIGR01116 ATPase-IIA1_Ca calci  63.4      12  0.0003   17.9   4.3   33  257-289   496-531 (800)
243 PHA02117 glutathionylspermidin  63.3      12  0.0003   17.9   5.4   15  356-370   368-382 (395)
244 TIGR00715 precor6x_red precorr  63.2      12  0.0003   17.9   6.0   90    4-104     2-99  (260)
245 PRK07114 keto-hydroxyglutarate  63.2      12  0.0003   17.9  10.4  114    5-152    21-135 (223)
246 PRK06048 acetolactate synthase  63.1      12 0.00031   17.9   9.0   34  164-198   130-163 (562)
247 pfam00743 FMO-like Flavin-bind  62.8      12 0.00031   17.8   4.0   32    3-34      2-33  (532)
248 cd01981 Pchlide_reductase_B Pc  62.5      12 0.00031   17.8   8.3   31  100-130   165-195 (430)
249 PRK06882 acetolactate synthase  62.4      11 0.00028   18.1   3.7   34  164-198   127-160 (574)
250 COG0673 MviM Predicted dehydro  62.3      12 0.00031   17.8   6.6  141    1-160     2-156 (342)
251 cd01065 NAD_bind_Shikimate_DH   61.7      13 0.00032   17.7   4.0   35    3-37     20-55  (155)
252 COG1671 Uncharacterized protei  61.5      13 0.00032   17.7  11.1  131    3-148     2-138 (150)
253 PRK06857 consensus              61.3      13 0.00033   17.7   8.6  118    5-163    17-139 (209)
254 cd05146 RIO3_euk RIO kinase fa  61.3      13 0.00033   17.7   6.0   53  248-300   128-182 (197)
255 TIGR01628 PABP-1234 polyadenyl  61.2     6.9 0.00018   19.6   2.4  109   81-204    43-168 (860)
256 TIGR03201 dearomat_had 6-hydro  61.1      13 0.00033   17.6  10.3   13  346-358   263-275 (349)
257 PRK11572 copper homeostasis pr  61.1      13 0.00033   17.6   4.0   72   62-184    10-81  (248)
258 TIGR01323 nitrile_alph nitrile  61.0      11 0.00028   18.2   3.4  126  220-377    25-155 (186)
259 PRK06995 flhF flagellar biosyn  60.9      13 0.00033   17.6   5.3   70  101-183   180-253 (404)
260 PRK09856 fructoselysine 3-epim  60.9      11 0.00028   18.2   3.4   19  257-275   231-249 (276)
261 cd06811 PLPDE_III_yhfX_like Ty  60.9      13 0.00033   17.6   3.8   57   62-130    41-99  (382)
262 TIGR01885 Orn_aminotrans ornit  60.7      13 0.00033   17.6   6.3  100    2-104   101-242 (426)
263 PRK07590 L,L-diaminopimelate a  60.6      13 0.00034   17.6   4.6   17  169-185   192-208 (409)
264 TIGR00789 flhB_rel FlhB domain  60.3       9 0.00023   18.7   2.9   57    4-70     19-77  (84)
265 PRK05192 tRNA uridine 5-carbox  60.3      13 0.00034   17.5   4.8   97    5-126     9-111 (621)
266 COG4948 L-alanine-DL-glutamate  59.6      14 0.00035   17.5   8.0   12  353-364   345-356 (372)
267 pfam05185 PRMT5 PRMT5 arginine  59.6      14 0.00035   17.5   4.4   23  274-296   327-351 (447)
268 PRK07092 benzoylformate decarb  59.4      11 0.00028   18.2   3.2   20   15-34      7-26  (521)
269 PRK05301 pyrroloquinoline quin  59.2      14 0.00036   17.4  11.6  118   13-152    51-185 (375)
270 PRK08125 bifunctional UDP-gluc  59.2      14 0.00036   17.4   3.8   77    4-83      2-85  (660)
271 TIGR00874 talAB transaldolase;  58.9      12 0.00031   17.9   3.3   60   57-134    29-94  (324)
272 PRK04527 argininosuccinate syn  58.9      14 0.00036   17.4   8.8   32    3-34      4-36  (397)
273 PRK05321 nicotinate phosphorib  58.8     1.8 4.5E-05   23.8  -1.0   56  360-415   277-341 (400)
274 PRK12724 flagellar biosynthesi  58.6      14 0.00036   17.3   4.7   16   63-78     12-27  (432)
275 pfam01163 RIO1 RIO1 family. Th  58.1      15 0.00037   17.3   4.7   55  247-301   106-162 (186)
276 TIGR02049 gshA_ferroox glutama  58.0     4.8 0.00012   20.7   1.2  171   16-203    99-319 (436)
277 PRK13117 consensus              57.7      15 0.00037   17.2   8.1  218   12-264    31-266 (268)
278 PRK12723 flagellar biosynthesi  57.7      15 0.00038   17.2   4.6   30  139-181   222-251 (388)
279 TIGR00694 thiM hydroxyethylthi  57.5      15 0.00038   17.2   7.7  108  117-245    69-202 (282)
280 pfam02548 Pantoate_transf Keto  57.2      15 0.00038   17.2   6.2   95  120-217   101-206 (261)
281 pfam00113 Enolase_C Enolase, C  57.2      15 0.00038   17.2   5.9   11  257-267   220-230 (296)
282 cd01483 E1_enzyme_family Super  57.0      15 0.00038   17.2   5.7   37    4-41      1-37  (143)
283 cd05147 RIO1_euk RIO kinase fa  56.8      15 0.00039   17.1   5.9   53  249-301   122-176 (190)
284 cd07085 ALDH_F6_MMSDH Methylma  56.6      13 0.00033   17.6   3.2  220   67-320   157-407 (478)
285 pfam08886 GshA Glutamate-cyste  56.6     3.4 8.8E-05   21.7   0.2   30  153-182   263-292 (404)
286 PRK13112 consensus              56.6      15 0.00039   17.1   8.1  219   14-265    34-271 (279)
287 PRK06965 acetolactate synthase  56.3      15 0.00039   17.1   3.7  132   61-198    22-177 (587)
288 COG3494 Uncharacterized protei  56.2      16  0.0004   17.1   7.2   63    5-78      8-72  (279)
289 TIGR00853 pts-lac PTS system,   56.2      16  0.0004   17.1   5.7   72   48-131    49-122 (142)
290 PRK08057 cobalt-precorrin-6x r  55.8      16  0.0004   17.0   7.7   88    2-103     1-93  (241)
291 cd00316 Oxidoreductase_nitroge  55.5      16 0.00041   17.0   8.7   16  115-130   167-182 (399)
292 PRK11081 tRNA guanosine-2'-O-m  55.4      16 0.00041   17.0   5.9   35   43-80     16-50  (229)
293 PRK08611 pyruvate oxidase; Pro  55.1      16 0.00041   17.0   9.9   44  149-198   117-160 (576)
294 pfam04842 DUF639 Plant protein  55.0     9.7 0.00025   18.5   2.3   31  393-423   467-497 (682)
295 PRK13398 3-deoxy-7-phosphohept  54.9      16 0.00041   16.9   5.9   48  140-201   124-172 (266)
296 pfam04227 Indigoidine_A Indigo  54.9     9.1 0.00023   18.7   2.2  184   63-277    34-261 (293)
297 pfam02593 DUF166 Uncharacteriz  54.9      16 0.00041   16.9   7.5   35    7-41      2-36  (215)
298 PRK07789 acetolactate synthase  54.7      16 0.00042   16.9   3.6  131   62-198    33-187 (612)
299 PRK08175 aminotransferase; Val  54.7      16 0.00042   16.9   4.0   14  392-405   376-389 (395)
300 pfam11394 DUF2875 Protein of u  54.5     6.5 0.00017   19.7   1.4   24  115-138    99-122 (451)
301 PRK07328 histidinol-phosphatas  54.4      17 0.00042   16.9   4.7   17   62-78     18-34  (268)
302 cd01545 PBP1_SalR Ligand-bindi  54.2      17 0.00042   16.9   6.7   23   11-33     15-37  (270)
303 PRK07695 transcriptional regul  54.1      17 0.00043   16.8   5.7   17   66-82     65-81  (202)
304 PRK00164 moaA molybdenum cofac  54.0      17 0.00043   16.8   8.7  130   14-185    56-188 (334)
305 PRK02910 light-independent pro  53.9      17 0.00043   16.8   4.7   31  100-130   161-191 (524)
306 PRK13136 consensus              53.7      17 0.00043   16.8   7.4  172   12-205    26-211 (253)
307 TIGR00838 argH argininosuccina  53.7     9.4 0.00024   18.6   2.1  100   64-180   136-239 (469)
308 TIGR01980 sufB FeS assembly pr  53.5      17 0.00042   16.9   3.3   38  151-203   158-196 (469)
309 cd07038 TPP_PYR_PDC_IPDC_like   53.4      17 0.00044   16.8   8.9   39  154-198   121-159 (162)
310 PRK12831 putative oxidoreducta  53.2      17 0.00044   16.7   4.4   28    3-30    141-168 (464)
311 PRK02615 thiamine-phosphate py  53.2      17 0.00044   16.7   4.6   45  219-272   218-267 (345)
312 TIGR01804 BADH betaine aldehyd  53.1     7.4 0.00019   19.3   1.5  158  158-341   244-433 (471)
313 TIGR02668 moaA_archaeal probab  53.1      17 0.00044   16.7   5.8  127   15-184    52-184 (324)
314 cd02004 TPP_BZL_OCoD_HPCL Thia  53.0      17 0.00044   16.7   3.7   41  154-201   131-171 (172)
315 cd01570 NAPRTase_A Nicotinate   53.0     4.3 0.00011   21.0   0.3   57  360-416   251-312 (327)
316 cd01137 PsaA Metal binding pro  52.9      17 0.00045   16.7   4.1   33   50-84     44-77  (287)
317 cd01966 Nitrogenase_NifN_1 Nit  52.5      18 0.00045   16.7   7.1   25   63-87     70-94  (417)
318 cd02002 TPP_BFDC Thiamine pyro  52.3      16 0.00042   16.9   3.1   40  153-199   137-176 (178)
319 cd06556 ICL_KPHMT Members of t  52.2      18 0.00046   16.6   4.4   45  170-217   150-200 (240)
320 PRK06725 acetolactate synthase  52.1      18 0.00046   16.6   9.3  128   63-198    18-170 (570)
321 PRK11749 putative oxidoreducta  52.0      18 0.00046   16.6   3.9   29    3-31    141-169 (460)
322 PRK13113 consensus              51.7      18 0.00046   16.6   8.0  173   13-207    32-220 (263)
323 cd01567 NAPRTase_PncB Nicotina  51.6     5.3 0.00014   20.4   0.6   57  359-415   264-329 (343)
324 TIGR03013 EpsB_2 sugar transfe  51.5      18 0.00047   16.6   6.5   29  306-334   278-306 (442)
325 pfam03575 Peptidase_S51 Peptid  51.5      18 0.00047   16.6   5.6   77   16-113     4-83  (154)
326 CHL00099 ilvB acetohydroxyacid  51.2      19 0.00047   16.5   3.6   31  167-198   138-168 (588)
327 PRK09414 glutamate dehydrogena  51.0      19 0.00048   16.5  10.6   14  153-166   191-204 (446)
328 COG0685 MetF 5,10-methylenetet  50.9      19 0.00048   16.5  10.2  122    9-149    88-226 (291)
329 COG1387 HIS2 Histidinol phosph  50.6      19 0.00048   16.5   5.7   20   59-78     14-33  (237)
330 KOG2518 consensus               50.5      19 0.00048   16.5   5.5   34   11-44    127-160 (556)
331 pfam06189 5-nucleotidase 5'-nu  50.4      14 0.00035   17.5   2.5   12   12-23     47-58  (263)
332 cd06839 PLPDE_III_Btrk_like Ty  50.0      19 0.00049   16.4   5.7   13   63-75     43-55  (382)
333 CHL00176 ftsH cell division pr  50.0      19 0.00049   16.4   3.7   15   63-77     96-110 (631)
334 COG2873 MET17 O-acetylhomoseri  49.9      19 0.00049   16.4   4.6   12   23-34      5-16  (426)
335 TIGR00737 nifR3_yhdG putative   49.7      19  0.0005   16.4   5.9   92   60-157   121-250 (336)
336 cd00308 enolase_like Enolase-s  49.2      20 0.00051   16.3   4.4   52   89-145   111-163 (229)
337 TIGR02386 rpoC_TIGR DNA-direct  49.1      19 0.00048   16.5   3.0  100  195-318   943-1054(1552)
338 TIGR03385 CoA_CoA_reduc CoA-di  48.9      20 0.00051   16.3   4.3   10   90-99    151-160 (427)
339 COG4091 Predicted homoserine d  48.9     4.5 0.00011   20.9  -0.2   89  118-220   143-238 (438)
340 COG1042 Acyl-CoA synthetase (N  48.7      20 0.00051   16.3   3.8   15   11-25     23-37  (598)
341 cd06810 PLPDE_III_ODC_DapDC_li  48.7      20 0.00051   16.3   6.2   13   63-75     37-49  (368)
342 PRK06953 short chain dehydroge  48.6      20 0.00052   16.3   6.1   36    2-38      1-38  (222)
343 cd05710 SIS_1 A subgroup of th  48.5      20 0.00052   16.2   4.2   16   63-78     63-78  (120)
344 TIGR02025 BchH magnesium chela  48.5     8.2 0.00021   19.1   1.1   18   16-33    287-304 (1384)
345 TIGR02313 HpaI-NOT-DapA 2,4-di  48.4      20 0.00052   16.2   4.2  199   99-326    37-283 (294)
346 PRK13134 consensus              48.4      20 0.00052   16.2   7.7  104   89-207   113-221 (257)
347 TIGR03581 EF_0839 conserved hy  48.3      20 0.00052   16.2   5.0  145    8-160    11-185 (236)
348 PRK05282 peptidase E; Validate  48.2      21 0.00052   16.2   7.0   73   16-110    52-124 (233)
349 PRK13120 consensus              48.1      21 0.00052   16.2   7.6  221   12-265    35-276 (285)
350 cd07035 TPP_PYR_POX_like Pyrim  48.0      21 0.00053   16.2   8.0   34  164-198   119-152 (155)
351 pfam00290 Trp_syntA Tryptophan  48.0      21 0.00053   16.2   7.1  174   12-207    23-212 (258)
352 PRK10637 cysG siroheme synthas  47.7      21 0.00053   16.2   7.2   32    3-34     13-44  (457)
353 PRK05647 purN phosphoribosylgl  47.7      20  0.0005   16.3   2.9   77    2-82      1-89  (200)
354 PRK08978 acetolactate synthase  47.6      21 0.00053   16.2   9.8   32  166-198   125-156 (548)
355 PRK11557 putative DNA-binding   47.6      21 0.00053   16.2   4.3   12   17-28     51-62  (282)
356 PRK07102 short chain dehydroge  47.5      21 0.00053   16.1   4.4   36    2-38      1-38  (243)
357 PRK09484 3-deoxy-D-manno-octul  47.4      21 0.00054   16.1   7.8   71   64-146    79-151 (186)
358 PRK06719 precorrin-2 dehydroge  47.2      21 0.00054   16.1   4.7   29    3-31     14-42  (157)
359 PRK02769 histidine decarboxyla  47.1      14 0.00035   17.4   2.1   51  127-180   136-187 (380)
360 TIGR02483 PFK_mixed phosphofru  47.0      21 0.00054   16.1   3.0   91   17-112    22-142 (339)
361 PRK07313 phosphopantothenoylcy  46.9      21 0.00055   16.1   4.5   36    1-36      1-40  (180)
362 PRK13123 consensus              46.7      22 0.00055   16.1   7.7  171   14-208    31-216 (256)
363 TIGR00033 aroC chorismate synt  46.6      13 0.00034   17.6   1.9   64  227-291   190-262 (391)
364 PRK13125 trpA tryptophan synth  46.5      22 0.00055   16.0   5.0  175   12-207    19-203 (247)
365 PRK06847 hypothetical protein;  46.4      22 0.00056   16.0   4.2   33    2-34      4-36  (375)
366 PRK12778 putative bifunctional  46.4      22 0.00056   16.0   4.4   74    3-79     99-184 (760)
367 PRK12814 putative NADPH-depend  46.4      22 0.00056   16.0   3.2   93    3-105   194-286 (652)
368 cd01489 Uba2_SUMO Ubiquitin ac  46.2      22 0.00056   16.0   3.4  117    4-134     1-122 (312)
369 PRK13143 hisH imidazole glycer  46.2      22 0.00056   16.0   5.9   46    2-53      1-47  (201)
370 TIGR02518 EutH_ACDH acetaldehy  45.5      22 0.00055   16.0   2.9  102   99-202   133-260 (528)
371 PRK09148 aminotransferase; Val  45.3      23 0.00058   15.9   4.3   15  391-405   377-391 (406)
372 PRK11636 mrcA peptidoglycan sy  45.2      20 0.00052   16.2   2.7   81  120-220   519-603 (850)
373 PRK07064 hypothetical protein;  45.1      23 0.00058   15.9   3.3   32  166-198   131-162 (544)
374 COG0205 PfkA 6-phosphofructoki  44.8      23 0.00059   15.9   5.7  100    1-104     1-123 (347)
375 cd02811 IDI-2_FMN Isopentenyl-  44.7      23 0.00059   15.8   6.2   15   88-102    71-85  (326)
376 PRK08286 cbiC precorrin-8X met  44.6      11 0.00027   18.2   1.2   93   59-164   101-198 (213)
377 COG0754 Gsp Glutathionylspermi  44.5      14 0.00037   17.3   1.8   25  347-371   351-375 (387)
378 PRK10310 galactitol-specific P  44.4      23 0.00059   15.8   4.6   50    1-50      1-56  (94)
379 TIGR02194 GlrX_NrdH Glutaredox  44.3      12 0.00031   17.9   1.4   39  118-157    14-55  (72)
380 PRK05858 hypothetical protein;  44.2      23  0.0006   15.8   9.3   34  165-199   130-163 (543)
381 TIGR00021 rpiA ribose 5-phosph  44.2     9.5 0.00024   18.6   0.9   57   91-156    34-95  (236)
382 PRK01390 murD UDP-N-acetylmura  44.2      23 0.00058   15.9   2.8   33    3-35     10-42  (457)
383 PRK09191 two-component respons  44.1      24  0.0006   15.8   8.4   16  171-186   117-132 (261)
384 COG0320 LipA Lipoate synthase   44.1      24  0.0006   15.8   4.1   16   63-78     38-53  (306)
385 COG3248 Tsx Nucleoside-binding  44.1     9.2 0.00023   18.7   0.8   22  280-306    97-118 (284)
386 PRK05868 hypothetical protein;  44.0      24  0.0006   15.8   4.3   30    2-31      1-30  (372)
387 cd00568 TPP_enzymes Thiamine p  43.9      24 0.00061   15.8   3.3   43  149-198   123-165 (168)
388 cd07047 BMC_PduB_repeat1 1,2-p  43.7      24 0.00061   15.8   3.0   66  139-213    52-124 (134)
389 pfam03932 CutC CutC family. Co  43.3      24 0.00062   15.7   5.3   73   62-185     9-81  (202)
390 PRK09860 putative alcohol dehy  43.2      24 0.00062   15.7   6.3   75    5-80     11-94  (383)
391 PRK13138 consensus              43.0      24 0.00062   15.7   8.3  220   12-264    27-263 (264)
392 cd04950 GT1_like_1 Glycosyltra  43.0      24 0.00062   15.7   7.6   21  385-405   320-340 (373)
393 TIGR01027 proB glutamate 5-kin  42.9      25 0.00063   15.7   3.3  222   14-269   117-368 (379)
394 cd01401 PncB_like Nicotinate p  42.9     4.1  0.0001   21.2  -1.1   56  360-415   275-339 (377)
395 PRK13940 glutamyl-tRNA reducta  42.8      25 0.00063   15.7   4.1   18  388-405   362-379 (414)
396 PRK09124 pyruvate dehydrogenas  42.8      25 0.00063   15.7   7.0   33  164-198   126-158 (574)
397 COG0352 ThiE Thiamine monophos  42.8      25 0.00063   15.7   3.0   77    4-83      8-90  (211)
398 cd01484 E1-2_like Ubiquitin ac  42.5      25 0.00063   15.6   3.6   36    4-40      1-36  (234)
399 PRK08942 D,D-heptose 1,7-bisph  42.3      25 0.00064   15.6   3.7   20   14-34     34-53  (181)
400 cd00945 Aldolase_Class_I Class  42.2      25 0.00064   15.6   8.8  144   15-160    16-180 (201)
401 PRK00124 hypothetical protein;  42.2      25 0.00064   15.6  11.1  129    4-148     2-137 (149)
402 PRK08617 acetolactate synthase  42.1      25 0.00064   15.6   9.5   34  164-198   127-160 (552)
403 cd06334 PBP1_ABC_ligand_bindin  42.0      25 0.00064   15.6   7.9   40   66-107    59-98  (351)
404 TIGR02024 FtcD glutamate formi  42.0      25 0.00065   15.6   3.5  150   12-187    18-210 (331)
405 PRK13135 consensus              41.8      25 0.00065   15.5   8.3  214   13-265    32-263 (267)
406 TIGR00624 tag DNA-3-methyladen  41.8      11 0.00027   18.3   0.8   66   96-188    43-108 (185)
407 PRK05920 aromatic acid decarbo  41.8      25 0.00065   15.5   4.1   38    1-38      3-44  (205)
408 PRK06466 acetolactate synthase  41.4      26 0.00066   15.5   3.7   31  167-198   130-160 (574)
409 PRK09238 bifunctional aconitat  41.4      26 0.00065   15.5   2.7   56    6-82    336-391 (841)
410 COG0214 SNZ1 Pyridoxine biosyn  41.4      21 0.00054   16.1   2.3   15  142-156    69-83  (296)
411 COG2308 Uncharacterized conser  41.4      26 0.00066   15.5   8.5   29  332-360   430-459 (488)
412 PTZ00124 adenosine deaminase;   41.3      26 0.00066   15.5   6.7   16   61-76     48-63  (362)
413 pfam02826 2-Hacid_dh_C D-isome  41.1      26 0.00066   15.5   4.1   29    3-31     37-65  (176)
414 PRK08609 hypothetical protein;  41.1      26 0.00067   15.5   6.0   49  365-413   416-467 (570)
415 PRK09246 amidophosphoribosyltr  41.0      26 0.00067   15.5   5.1   14  429-442   461-474 (503)
416 PRK13118 consensus              41.0      26 0.00067   15.5   9.0  216   12-265    31-265 (269)
417 COG1964 Predicted Fe-S oxidore  40.9      16  0.0004   17.0   1.6   84   87-181    75-163 (475)
418 pfam04321 RmlD_sub_bind RmlD s  40.8      26 0.00067   15.5   8.0   84    5-110     1-102 (284)
419 COG2089 SpsE Sialic acid synth  40.8      26 0.00067   15.4   8.3  152   11-202    29-184 (347)
420 pfam04748 Polysacc_deac_2 Dive  40.7      26 0.00067   15.4   7.9  110   14-136    34-150 (213)
421 PRK05569 flavodoxin; Provision  40.7      26 0.00067   15.4  10.3  101    2-104     1-116 (141)
422 TIGR00118 acolac_lg acetolacta  40.6      26 0.00068   15.4   3.8  334   16-422     6-372 (593)
423 PRK09196 fructose-1,6-bisphosp  40.6      27 0.00068   15.4   6.7   74   61-158    29-107 (347)
424 TIGR02463 MPGP_rel mannosyl-3-  40.4      18 0.00047   16.6   1.9   32   13-44     20-51  (224)
425 cd01490 Ube1_repeat2 Ubiquitin  40.4      27 0.00068   15.4   2.9   34    4-38      1-39  (435)
426 TIGR00421 ubiX_pad polyprenyl   40.4      27 0.00068   15.4   3.1   29   10-38     10-39  (181)
427 pfam04309 G3P_antiterm Glycero  40.4      27 0.00068   15.4   7.0   13  168-180   147-159 (174)
428 PRK06740 histidinol-phosphatas  40.3      27 0.00068   15.4   6.7   26  140-165   156-181 (338)
429 COG0465 HflB ATP-dependent Zn   40.3      27 0.00068   15.4   5.3   31   95-130   181-211 (596)
430 cd05008 SIS_GlmS_GlmD_1 SIS (S  40.3      27 0.00068   15.4   4.4   73    4-78      1-77  (126)
431 COG4109 Predicted transcriptio  40.3      24  0.0006   15.8   2.4   48  110-157   117-164 (432)
432 pfam01380 SIS SIS domain. SIS   40.2      27 0.00068   15.4   4.9   74    2-78      5-84  (131)
433 PRK06546 pyruvate dehydrogenas  40.2      27 0.00068   15.4   7.0   33  164-198   126-158 (578)
434 PRK06264 cbiC precorrin-8X met  40.2      13 0.00033   17.6   1.1  140   12-165    40-194 (210)
435 TIGR01011 rpsB_bact ribosomal   40.2      20 0.00051   16.3   2.0   38   87-130    51-91  (227)
436 cd01985 ETF The electron trans  40.2      27 0.00069   15.4   5.6   50   99-162    93-142 (181)
437 PRK13133 consensus              40.1      27 0.00069   15.4   8.5  177   12-208    29-227 (267)
438 COG0656 ARA1 Aldo/keto reducta  40.0      27 0.00069   15.4   5.5  149    9-164    25-197 (280)
439 TIGR00970 leuA_yeast 2-isoprop  39.9      17 0.00044   16.7   1.7  125   14-149    54-198 (615)
440 cd02014 TPP_POX Thiamine pyrop  39.8      27 0.00069   15.3   3.7   46  150-202   128-173 (178)
441 PRK10676 DNA-binding transcrip  39.8      27 0.00069   15.3   4.0   80   97-185    11-95  (262)
442 TIGR03586 PseI pseudaminic aci  39.8      27 0.00069   15.3   4.6  140   12-184    17-158 (327)
443 TIGR00289 TIGR00289 conserved   39.7      19 0.00049   16.4   1.9   62  114-178   102-171 (227)
444 PRK08322 acetolactate synthase  39.4      28  0.0007   15.3   9.2   31  167-198   126-156 (547)
445 PRK08636 aspartate aminotransf  39.3      28 0.00071   15.3   3.9   22  386-407   378-402 (403)
446 pfam06050 HGD-D 2-hydroxygluta  39.3      28 0.00071   15.3   5.9   15  254-268   272-286 (345)
447 COG0569 TrkA K+ transport syst  39.3      28 0.00071   15.3   7.8   70    3-80      1-72  (225)
448 PRK07945 hypothetical protein;  39.3      28 0.00071   15.3   6.3   73  132-216   105-180 (335)
449 PRK09107 acetolactate synthase  39.2      28 0.00071   15.3   3.7   33  165-198   135-167 (594)
450 PRK06855 aminotransferase; Val  39.2      28 0.00071   15.3   3.9   17  169-185   187-203 (433)
451 PRK00077 eno phosphopyruvate h  39.1      23 0.00057   15.9   2.2   17  388-404   390-406 (427)
452 cd01488 Uba3_RUB Ubiquitin act  39.1      28 0.00071   15.3   3.4   36    4-40      1-36  (291)
453 PRK05575 cbiC precorrin-8X met  39.1      13 0.00033   17.6   0.9   92   59-163    96-191 (204)
454 PRK00143 trmU tRNA (5-methylam  39.1       7 0.00018   19.5  -0.5   40  137-181   171-210 (355)
455 pfam02563 Poly_export Polysacc  39.1      28 0.00071   15.3   5.9   60  341-407     9-72  (83)
456 TIGR03549 conserved hypothetic  39.0      26 0.00065   15.5   2.4   46  241-291   360-413 (718)
457 PRK00881 purH bifunctional pho  39.0      28 0.00071   15.3   6.6  142    1-182     3-159 (514)
458 PRK06718 precorrin-2 dehydroge  39.0      28 0.00071   15.3   4.5   29    3-31     11-39  (202)
459 cd05211 NAD_bind_Glu_Leu_Phe_V  38.9      28 0.00072   15.2   9.2  104    3-131    24-132 (217)
460 PRK09754 phenylpropionate diox  38.9      28 0.00072   15.2   4.3   33    3-35      4-37  (400)
461 cd04724 Tryptophan_synthase_al  38.8      28 0.00072   15.2   8.1  172   12-207    14-202 (242)
462 PRK09492 treR trehalose repres  38.8      12  0.0003   18.0   0.7   62   12-79     34-97  (315)
463 TIGR02881 spore_V_K stage V sp  38.8      17 0.00044   16.7   1.5   46   43-91    109-165 (261)
464 PRK06327 dihydrolipoamide dehy  38.8      28 0.00072   15.2   4.0   33    1-33      1-35  (475)
465 COG3384 Aromatic ring-opening   38.7      18 0.00045   16.7   1.6   20   15-34     33-52  (268)
466 cd02032 Bchl_like This family   38.7      28 0.00072   15.2   6.3   37    4-40      2-43  (267)
467 CHL00067 rps2 ribosomal protei  38.5      28 0.00072   15.2   3.3   37   89-131    54-92  (227)
468 PRK07709 fructose-bisphosphate  38.5      28 0.00073   15.2  12.3   19   61-79     29-47  (285)
469 CHL00175 minD septum-site dete  38.4      29 0.00073   15.2   6.7   23   12-34     29-51  (279)
470 PRK08010 pyridine nucleotide-d  38.0      29 0.00074   15.2   5.2   29    4-32      5-33  (441)
471 TIGR00274 TIGR00274 glucokinas  37.9      29 0.00074   15.1   3.3   41    9-51    137-177 (291)
472 PRK00311 panB 3-methyl-2-oxobu  37.8      29 0.00074   15.1   6.2   16  170-185   157-172 (266)
473 PRK06361 hypothetical protein;  37.7      29 0.00075   15.1   5.1   16   16-31     19-34  (216)
474 cd05803 PGM_like4 This PGM-lik  37.6      29 0.00075   15.1   7.2   43  358-401   401-443 (445)
475 pfam07071 DUF1341 Protein of u  37.4      30 0.00075   15.1   5.1  159    8-183    11-199 (218)
476 PRK05939 hypothetical protein;  37.4      30 0.00075   15.1   5.5   20  385-404   375-394 (396)
477 cd02922 FCB2_FMN Flavocytochro  37.3      30 0.00076   15.1   3.6   68    6-78     77-148 (344)
478 TIGR00032 argG argininosuccina  37.3      30 0.00076   15.1   7.0   97   61-158   100-208 (420)
479 PRK13479 2-aminoethylphosphona  37.2      30 0.00076   15.1   6.4   59  118-179    94-157 (368)
480 cd02003 TPP_IolD Thiamine pyro  37.2      30 0.00076   15.1   3.7   43  154-203   143-185 (205)
481 pfam00551 Formyl_trans_N Formy  37.1      30 0.00076   15.1   6.9   80    4-84      4-90  (181)
482 COG4251 Bacteriophytochrome (l  37.0      16  0.0004   17.1   1.1   54  144-204   124-177 (750)
483 TIGR00750 lao LAO/AO transport  37.0      30 0.00076   15.0   3.6  101   79-212    46-155 (333)
484 PRK08199 acetolactate synthase  36.7      30 0.00077   15.0   9.0  130   64-198     6-158 (553)
485 pfam07992 Pyr_redox_2 Pyridine  36.5      31 0.00078   15.0   4.1   33    3-35    137-169 (277)
486 PRK12457 2-dehydro-3-deoxyphos  36.5      31 0.00078   15.0   7.0  107   63-197    36-163 (281)
487 PRK13127 consensus              36.5      31 0.00078   15.0   7.6   81   63-147   104-218 (262)
488 PRK13115 consensus              36.4      31 0.00078   15.0   8.2   85   63-147   116-230 (269)
489 PRK04690 murD UDP-N-acetylmura  36.4      31 0.00078   15.0   7.5   87    3-104     9-98  (468)
490 PRK05976 dihydrolipoamide dehy  36.3      31 0.00078   15.0   4.2   33    3-35    176-208 (464)
491 PRK13116 consensus              36.3      31 0.00078   15.0   7.8   87   59-149   101-228 (278)
492 cd02202 FtsZ_type2 FtsZ is a G  36.2      31 0.00078   15.0   8.6   98    4-104     2-133 (349)
493 PRK06116 glutathione reductase  36.2      31 0.00079   15.0   4.2   33    3-35    168-200 (450)
494 cd02005 TPP_PDC_IPDC Thiamine   35.9      31 0.00079   14.9   3.9   43  151-198   128-170 (183)
495 pfam02775 TPP_enzyme_C Thiamin  35.9      31 0.00079   14.9   3.3   44  148-198   106-149 (150)
496 PRK05942 aspartate aminotransf  35.9      31 0.00079   14.9   3.6   71   91-184   309-388 (394)
497 cd03796 GT1_PIG-A_like This fa  35.7      31  0.0008   14.9   8.1  110   62-184   207-332 (398)
498 PRK00676 hemA glutamyl-tRNA re  35.6      31  0.0008   14.9   4.1   29    3-31    175-203 (338)
499 PRK10624 L-1,2-propanediol oxi  35.6      31  0.0008   14.9   6.0   77    1-78      5-90  (381)
500 TIGR02022 hutF formiminoglutam  35.5      25 0.00064   15.6   1.9   19    8-26    136-154 (466)

No 1  
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549   This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=100.00  E-value=0  Score=1387.34  Aligned_cols=441  Identities=63%  Similarity=1.049  Sum_probs=435.3

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf             97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP   80 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP   80 (443)
                      |++|||||||||||+||+|||+||||+||||||..|+++.||.+|||++|||+.++..|||||+.||.+|+.+|+|||||
T Consensus         1 ~~~K~lIANRGEIA~RIiRAC~ElGi~TVAVyS~aD~dalHV~LADEavCIGea~S~kSYL~IpnI~aAA~~tG~~AiHP   80 (451)
T TIGR00514         1 MLDKILIANRGEIALRIIRACKELGIATVAVYSTADRDALHVLLADEAVCIGEAPSAKSYLNIPNIIAAAEITGADAIHP   80 (451)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCEECC
T ss_conf             98548995260678899998886498639860044133234343025300686221124411588999887748807628


Q ss_pred             CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC-C--CHHHHHHHHHCCCCHHHHHC
Q ss_conf             85313109766688984592162689899987218998877664224433243334-5--57999873200330122000
Q gi|254780268|r   81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE-V--YPHTAMPIAKEIGFPVLVKA  157 (443)
Q Consensus        81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~-~--~~~ea~~~a~~iGyPviiKp  157 (443)
                      |||||||||+||+.|++.|++||||+|++|++||||..||++|+++||||+||+.. .  +.++..+.|++|||||||||
T Consensus        81 GYGFLSENA~FAe~c~~~g~~FIGP~pe~Ir~MGDK~~A~~~mKkaGVP~VPGS~GP~~~~~~e~~~~A~~IGyPv~IKA  160 (451)
T TIGR00514        81 GYGFLSENADFAEICEDHGITFIGPSPEAIRLMGDKVTAKETMKKAGVPVVPGSDGPLVEDEEEAVRIAKEIGYPVIIKA  160 (451)
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             87734431247889873882666787120112688689999997488766238888631027889999974789689996


Q ss_pred             CCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             23457821688875066899999875432125899816884434201103315777347870236566542113562255
Q gi|254780268|r  158 SAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIW  237 (443)
Q Consensus       158 ~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkii  237 (443)
                      +.||||||||+|++++||.++|..++.||.++|+|+.|++||||++|||||+|||+|.|||+||||||||||||||||+|
T Consensus       161 ~AGGGGRGmR~vR~~~El~~~~~~a~~EA~AAF~N~~VYiEKfienPRH~E~QVLAD~~GN~vyLgERDCSiQRR~QKll  240 (451)
T TIGR00514       161 TAGGGGRGMRVVREEDELVKLIKAARAEAAAAFNNDGVYIEKFIENPRHVEIQVLADKYGNVVYLGERDCSIQRRNQKLL  240 (451)
T ss_pred             ECCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEECCCCCCHHCCCCCEE
T ss_conf             25899722588628689999999999999740287962786333699407999875178887897121462000465446


Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCC-EEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHC
Q ss_conf             4034455889999999999999886515434102458972-883-49982276543320167886325620112322210
Q gi|254780268|r  238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQ-FYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASE  315 (443)
Q Consensus       238 EeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~-~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g  315 (443)
                      ||||||.|++++|++|-+.|+++++.+||.|+||||||+| +++ |||||||||+|||||||||||||||+++||+||.|
T Consensus       241 EEaPsP~Lt~ElR~~~G~~Av~aA~~iGY~GaGTvEFLld~~~~rFYFmEMNTRIQVEHPVTEmvtGvDL~keQirvA~G  320 (451)
T TIGR00514       241 EEAPSPALTSELREKMGDAAVKAAKSIGYTGAGTVEFLLDKNGQRFYFMEMNTRIQVEHPVTEMVTGVDLIKEQIRVAAG  320 (451)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHHCCCEECCEEEEEEECCCCEEEEEEECCEEEEEECCEEEEECHHHHHHHHHHHCC
T ss_conf             54688877889999998999999986498003516888625887357765176021110320146002578889987378


Q ss_pred             CCCCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHH
Q ss_conf             22222113333201245330245662-21111244215886689984467776023877077768433899995599899
Q gi|254780268|r  316 NRLSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKE  394 (443)
Q Consensus       316 ~~l~~~~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~  394 (443)
                      ++|+++|++|.++||||||||||||| +||+||||+|+.|.+|+|+||||||++|+||.|||||||||||||+||+||++
T Consensus       321 ~~L~~kQe~v~~~GHaieCRINAEDP~~~F~PsPG~i~~ylpPGG~gVR~DSh~Y~gY~iPPyYDSmIaKlI~~G~~R~~  400 (451)
T TIGR00514       321 EKLSLKQEDVKLRGHAIECRINAEDPIKNFLPSPGRITSYLPPGGPGVRVDSHVYSGYTIPPYYDSMIAKLITYGKTREE  400 (451)
T ss_pred             CCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEECCCCCCCCCCHHCCEEEEECCCCHHH
T ss_conf             95664311479998899865145587877868885015546879752201003448787698402020124640589889


Q ss_pred             HHHHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHC
Q ss_conf             99999987654088263778889998968988955886531687510
Q gi|254780268|r  395 CMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKY  441 (443)
Q Consensus       395 Ai~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~  441 (443)
                      ||+||.|||+|+.|.||+|||+||+.||++|.|.+|+++|+||+++-
T Consensus       401 AI~rMKrAL~E~~I~G~~TtI~fH~~iL~~e~F~~G~~~~~f~~~~~  447 (451)
T TIGR00514       401 AIARMKRALSEFIITGIKTTIPFHQRILENENFLSGGVNIKFLEKKL  447 (451)
T ss_pred             HHHHHHHHHHHHEECCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf             99999887542220771058468988627865224873379998774


No 2  
>TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084   Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast). The allophanate hydrolase domain of the yeast enzyme is not included in this entry and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from O. sagaranensis was shown to be highly active on acetamide and formamide as well as urea..
Probab=100.00  E-value=0  Score=1307.58  Aligned_cols=438  Identities=44%  Similarity=0.767  Sum_probs=428.9

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf             70686644709999999988880965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r    2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG   81 (443)
Q Consensus         2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG   81 (443)
                      |+|||||||||||||||||+|+|||+||||||++|+.|+||..||++++|++.+..+|||++|+||++||++|++|||||
T Consensus         1 F~~vLiANRGEIA~RiirTL~~lgi~sVAvYS~aD~~s~HV~~AD~A~~Lg~~~A~esYL~~dkil~~Ak~tGA~AI~PG   80 (1226)
T TIGR02712         1 FKTVLIANRGEIAVRIIRTLRKLGIRSVAVYSDADRASQHVLDADEAVCLGGATAAESYLDIDKILAIAKKTGAQAIHPG   80 (1226)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCEECCCCCCHHHHHCCHHHHHHHHHHCCCCEEECC
T ss_conf             96567764437999999998771863798632100215782360502605895413222147899999975589387458


Q ss_pred             CCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf             53131097666889845921626898999872189988776642244332433345-57999873200330122000234
Q gi|254780268|r   82 YGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV-YPHTAMPIAKEIGFPVLVKASAG  160 (443)
Q Consensus        82 yGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~-~~~ea~~~a~~iGyPviiKp~~g  160 (443)
                      ||||||||+||++|+++||.||||+|+.|+.+|-|+.||++|+++|||.+||+... +.+||++.|++||||||||+++|
T Consensus        81 YGFLSENA~FA~~C~~aGI~FvGPtpe~ir~fGLKHtAR~lA~~aGVPL~PGTgLL~sl~eA~~~A~~IGYPVMlKSTAG  160 (1226)
T TIGR02712        81 YGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLESLDEALEAAKEIGYPVMLKSTAG  160 (1226)
T ss_pred             CCCCCCCHHHHHHHHHCCCEEECCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             87235787799899847957877870667443832568999996688988851558779999999864699547987078


Q ss_pred             CCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf             57821688875066899999875432125899816884434201103315777347870236566542113562255403
Q gi|254780268|r  161 GGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEA  240 (443)
Q Consensus       161 GGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEea  240 (443)
                      |||+||+.|++.+||.++|+.+++.++++|+|..||+||||+.+|||||||+|||+|++++|||||||+||||||||||+
T Consensus       161 GGGIGl~~c~~~~eL~~aFe~Vkrlg~~~F~daGVFlErfv~~ARHvEVQifGDG~G~v~aLGeRDCSLQRRNQKVvEET  240 (1226)
T TIGR02712       161 GGGIGLQKCDNAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEET  240 (1226)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEC
T ss_conf             76524511189899999999989988632363514340320378428998752697336997116754444566558727


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf             4455889999999999999886515434102458972--88349982276543320167886325620112322210222
Q gi|254780268|r  241 HSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE--NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRL  318 (443)
Q Consensus       241 Pap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~--~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l  318 (443)
                      |||+||+++|++|.++|.+|+++|+|+++|||||+||  .++||||||||||||||||||+|||||||+|||++|+|..+
T Consensus       241 PAP~LP~~~R~~L~~AA~~Lg~~V~YrSAGTVEFiYD~~~d~FYFLEVNTRLQVEHPvTE~VtGlDLVEWM~r~AAg~~p  320 (1226)
T TIGR02712       241 PAPNLPEETRAALLAAAEKLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVEHPVTEMVTGLDLVEWMVRIAAGELP  320 (1226)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHCCCCC
T ss_conf             74686489999999999999997187637604774022108712113234111335730178464089899997168888


Q ss_pred             CCCCCCC------CCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCC--CCEEEECCCCCCCEECCCCCCCEEEEEEEC
Q ss_conf             2211333------3201245330245662-211112442158866899--844677760238770777684338999955
Q gi|254780268|r  319 SVQQKDI------TFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGG--LGIRMDSASYQGYTVPSYYDSLIAKLIVHG  389 (443)
Q Consensus       319 ~~~~~~i------~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~~--~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g  389 (443)
                      ++.+-.+      .++|||||+||||||| +||.||||.||...||+.  ..|||||||..|.+|||+|||||||||+||
T Consensus       321 ~~~~~~~~~~~~l~p~G~aiEaRvYAEnP~k~F~PSpG~Lt~V~FP~~~G~~~RvDTWV~~Gtevsp~YDPmlAKiIv~g  400 (1226)
T TIGR02712       321 DFDSLNIEIFDNLTPRGAAIEARVYAENPAKNFQPSPGLLTEVQFPDDGGKAVRVDTWVETGTEVSPEYDPMLAKIIVHG  400 (1226)
T ss_pred             CHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEECEECCCCEECCCCCCCEEEEEECC
T ss_conf             85244300035788750389999844077677726986068877278889537870211278356776587424466436


Q ss_pred             CCHHHHHHHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHH
Q ss_conf             99899999999876540882637788899989689889558865316875
Q gi|254780268|r  390 KNRKECMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLEN  439 (443)
Q Consensus       390 ~~R~~Ai~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~  439 (443)
                      +||++|++||..||++|+|.|+.||++||++|+.++.|++|+.+|++|+.
T Consensus       401 ~~R~~A~~kL~~AL~~T~v~Gi~TNLdYLr~i~~s~~F~~g~~sT~~L~~  450 (1226)
T TIGR02712       401 KDREDAIAKLSQALDETRVYGIETNLDYLRSILSSEVFRSGQVSTRLLNS  450 (1226)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf             79789999999887301012354247899988401334102577664005


No 3  
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930    In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys.    Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis.  ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate  Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=1295.61  Aligned_cols=437  Identities=48%  Similarity=0.832  Sum_probs=425.5

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCC-------CCCCHHCCHHHHHHHHHHCCCC
Q ss_conf             686644709999999988880965999858557718776758579991899-------8530006989999999870998
Q gi|254780268|r    4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPP-------SSKDSYLNIQQIVAACEVTGAD   76 (443)
Q Consensus         4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~-------~~~~sYldi~~ii~~a~~~~~d   76 (443)
                      |||||||||||+||.|||+||||+||||||..|+.|+|...|||+|.+|.+       .+.++||+||.||.+||++++|
T Consensus         1 kvLVANRgEIAIRvFRAa~EL~i~tVAvYs~eD~~~~Hr~KADEaY~vG~g~~lard~~Pv~AYL~I~eiI~vAk~~~vD   80 (1169)
T TIGR01235         1 KVLVANRGEIAIRVFRAANELGIRTVAVYSEEDKLSLHRQKADEAYLVGEGPQLARDLKPVEAYLSIDEIIRVAKKNKVD   80 (1169)
T ss_pred             CEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf             91453166520246423101387269996531574557402341001147631010268721304715698996007897


Q ss_pred             EEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC--CHHHHHHHHHCCCCHHH
Q ss_conf             9945853131097666889845921626898999872189988776642244332433345--57999873200330122
Q gi|254780268|r   77 AIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV--YPHTAMPIAKEIGFPVL  154 (443)
Q Consensus        77 aihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~--~~~ea~~~a~~iGyPvi  154 (443)
                      ||||||||||||.+||++|.++||.||||+++.|+++|||..||++|.++|||++||+..+  +.+|+++|++++|||||
T Consensus        81 aiHPGYGfLSE~~~Fa~~v~~aGi~FIGP~a~~~~~~GdKV~AR~~A~~aGvPvvPgt~Gp~~t~eev~~f~~~~GYPvi  160 (1169)
T TIGR01235        81 AIHPGYGFLSENSEFADAVVKAGIVFIGPKAEVLDQLGDKVAARNLAIKAGVPVVPGTDGPVETLEEVLDFAKAIGYPVI  160 (1169)
T ss_pred             EEECCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf             77088562248878999998689567379747775405768999888877887636886875259999999975699589


Q ss_pred             HHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             00023457821688875066899999875432125899816884434201103315777347870236566542113562
Q gi|254780268|r  155 VKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQ  234 (443)
Q Consensus       155 iKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~q  234 (443)
                      +||++||||||||||++.+|+.++|++|++||+++||++.|||||||+.|||||||||||.+||+|||+|||||||||||
T Consensus       161 ~KAs~GGGGRGMRvvR~~~dv~~~~~rA~sEA~AAFGnd~~yvEklie~pkHiEvQ~LGD~~GNVVHLFERDCSVQRRhQ  240 (1169)
T TIGR01235       161 IKASYGGGGRGMRVVRSEEDVADAFQRAKSEAKAAFGNDEVYVEKLIERPKHIEVQLLGDKHGNVVHLFERDCSVQRRHQ  240 (1169)
T ss_pred             EEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCCEEECC
T ss_conf             87216889720168607567999988876887310489806985102488207898763488987888750776200055


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-C-CCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHH
Q ss_conf             2554034455889999999999999886515434102458972-8-8349982276543320167886325620112322
Q gi|254780268|r  235 KIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-N-GQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYV  312 (443)
Q Consensus       235 kiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~-~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~  312 (443)
                      ||||.||||.||+++|++|.++|+|+++++||.|+||||||+| + |+||||||||||||||||||+|||||||++||+|
T Consensus       241 KVvE~APA~~Ls~e~Rd~~~~~AvkLAk~~nY~nAGTvEFL~d~~~G~FYFIEvNpRiQVEHTvTE~iTGiDiV~aQI~v  320 (1169)
T TIGR01235       241 KVVEVAPAPSLSREVRDEIAEYAVKLAKEVNYINAGTVEFLVDNDTGKFYFIEVNPRIQVEHTVTEEITGIDIVQAQIRV  320 (1169)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEEEEECCCHHHHHHHHH
T ss_conf             07886788778888999999999999874289888724885554889377899888000115586467340377789999


Q ss_pred             HHCCCCC-----CC-CCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECC-CCCCCEECCCCCCCEEE
Q ss_conf             2102222-----21-13333201245330245662-21111244215886689984467776-02387707776843389
Q gi|254780268|r  313 ASENRLS-----VQ-QKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSA-SYQGYTVPSYYDSLIAK  384 (443)
Q Consensus       313 a~g~~l~-----~~-~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~-~~~G~~i~~~yDsmlaK  384 (443)
                      |.|.+|+     +. |++|..+||||||||+.||| +||+|++|+|+.||.-+|.|||+||| -|+|..|||||||||-|
T Consensus       321 a~G~sL~~~~~g~~~Q~~I~t~GyAiQcRvTTEDP~~dF~PdtGri~~YRSa~G~GvRLD~G~sY~GAiItpYYDsLLVK  400 (1169)
T TIGR01235       321 AEGASLPSKQLGVPEQEDIKTRGYAIQCRVTTEDPANDFQPDTGRIEVYRSAGGFGVRLDGGNSYAGAIITPYYDSLLVK  400 (1169)
T ss_pred             HCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEE
T ss_conf             65574687757788654403501488722544586426688967278998178431761676641463016752331010


Q ss_pred             EEEECCCHHHHHHHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHH
Q ss_conf             99955998999999998765408826377888999896898895588653168751
Q gi|254780268|r  385 LIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENK  440 (443)
Q Consensus       385 iI~~g~~R~~Ai~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~  440 (443)
                      +++||.|.++|.+||.|||+||+|+||+||||||.+|+.||.|++|.|+|.|||++
T Consensus       401 ~~~~A~~~~~a~~kM~RaL~EFRIRGvkTNipFL~~v~~~~kF~~g~Y~T~FID~t  456 (1169)
T TIGR01235       401 VSAWASTFEEAAAKMVRALREFRIRGVKTNIPFLLNVLKHPKFLEGSYDTSFIDTT  456 (1169)
T ss_pred             EEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEECCCEEEEEECCC
T ss_conf             01037898999999754201110022112537999985387121570568773388


No 4  
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00  E-value=0  Score=1247.48  Aligned_cols=442  Identities=67%  Similarity=1.098  Sum_probs=437.2

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf             97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP   80 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP   80 (443)
                      ||||||||||||||+||+||||||||+||+|||++|++|+|+++|||+|+||+++..+||||+++||++|+++++|||||
T Consensus         1 M~~kvLIANRGEIA~RiiRt~~elgi~tVavys~~D~~a~hv~~ADeav~ig~~~~~~sYln~~~Ii~~A~~~g~dAihP   80 (449)
T PRK08591          1 MFDKILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHP   80 (449)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHHCCCCHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEC
T ss_conf             96448896784999999999998499499986857527852885988899589884333048999999999829998972


Q ss_pred             CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHCCCCHHHHHCC
Q ss_conf             8531310976668898459216268989998721899887766422443324333--45579998732003301220002
Q gi|254780268|r   81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG--EVYPHTAMPIAKEIGFPVLVKAS  158 (443)
Q Consensus        81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~--~~~~~ea~~~a~~iGyPviiKp~  158 (443)
                      ||||||||++||++|+++|++||||++++|+.||||..+|++|+++|||++||+.  ..+.+++.++++++||||||||+
T Consensus        81 GYGFLSEna~FA~~~~~~Gi~fIGP~~~~i~~~GdK~~ar~~a~~agVPvvpgs~~~~~~~~ea~~~a~~iGyPv~iKA~  160 (449)
T PRK08591         81 GYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKAT  160 (449)
T ss_pred             CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             74243258999999998799999929999998769899999999839997888766556899999999874996698852


Q ss_pred             CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             34578216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r  159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE  238 (443)
Q Consensus       159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE  238 (443)
                      +|||||||++|++++||.++|+++++||+++|||+.||+||||+++|||||||++|++||++||||||||+||||||+||
T Consensus       161 ~GGGGrGmrvv~~~~el~~~~~~~~~Ea~~aFg~~~v~iEk~i~~~RHIEVQilgD~~Gn~vhl~eRdCSiQRR~QKvIE  240 (449)
T PRK08591        161 AGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLE  240 (449)
T ss_pred             CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEECCCCCCCHHHCCCEEEE
T ss_conf             68987769998567899999999999999737998567877125653678999863899889874775672014613799


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf             03445588999999999999988651543410245897288349982276543320167886325620112322210222
Q gi|254780268|r  239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRL  318 (443)
Q Consensus       239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l  318 (443)
                      |||||.|+++++++|.++|+++++++||+|+||||||+|+++||||||||||||||||||++||+|||++||++|.|.+|
T Consensus       241 EaPap~l~~~~r~~m~~~A~~la~~v~Y~~aGTvEFL~d~~~fyFlEmNtRlQVEHpVTE~vtGiDLV~~Qi~iA~G~~L  320 (449)
T PRK08591        241 EAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYENGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQIRIAAGEPL  320 (449)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEEEEECCCCCCCCCCHHHHCCCHHHHHHHHHCCCCC
T ss_conf             77998789999999999999999974964210389999789089996243412456522665077199999998679999


Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHH
Q ss_conf             22113333201245330245662211112442158866899844677760238770777684338999955998999999
Q gi|254780268|r  319 SVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMR  398 (443)
Q Consensus       319 ~~~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~  398 (443)
                      ++.|+++.++|||||||||||||+||+||+|+|+.|++|+|+|||+||++++|++|||+|||||||+|+||+||++|++|
T Consensus       321 ~~~q~~i~~~GhAIE~Ri~AEdP~~f~Ps~G~i~~~~~P~g~gvRvDt~~~~G~~v~~~YDsmlaKlI~~g~~R~~Ai~r  400 (449)
T PRK08591        321 SIKQEDIVFRGHAIECRINAEDPKNFMPSPGKITRYHPPGGPGVRVDSHVYTGYTIPPYYDSMIGKLIVHGETREEAIAR  400 (449)
T ss_pred             CCCCCCCCCCCCCHHEEECCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCEECCCCCCHHCEEEEECCCHHHHHHH
T ss_conf             97710067576112101013584546788727879974899988995881568984887455320388978999999999


Q ss_pred             HHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHCC
Q ss_conf             99876540882637788899989689889558865316875106
Q gi|254780268|r  399 LNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKYL  442 (443)
Q Consensus       399 l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~~  442 (443)
                      |.+||+++.|.|++||++||++||++|+|++|+++|+|||+|++
T Consensus       401 l~~AL~e~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fle~~la  444 (449)
T PRK08591        401 MKRALSEFVIDGIKTTIPLHLRLLNDPNFQAGDYNIHYLEKKLA  444 (449)
T ss_pred             HHHHHHCCEEECCCCCHHHHHHHHCCHHHCCCCCCHHHHHHHHH
T ss_conf             99997366997966869999999679212289975148888633


No 5  
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00  E-value=0  Score=1244.76  Aligned_cols=440  Identities=50%  Similarity=0.880  Sum_probs=428.6

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCC-CCCHHCCHHHHHHHHHHCCCCEEE
Q ss_conf             9706866447099999999888809659998585577187767585799918998-530006989999999870998994
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPS-SKDSYLNIQQIVAACEVTGADAIH   79 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~-~~~sYldi~~ii~~a~~~~~daih   79 (443)
                      -|||||||||||||+||+|||+||||+||+|||++|++|+|+.+|||+|+||++. +.+||||+++||++|++++|||||
T Consensus         4 ~~~kvLiANRGEIA~Ri~Ra~~elgi~tVavys~~D~~s~h~~~ADea~~ig~~~~p~~sYL~~~~ii~~A~~~~~dAiH   83 (1147)
T PRK12999          4 KIKKVLVANRGEIAIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKGPIEAYLDIDEIIRVAKQAGVDAIH   83 (1147)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHCCEEEEECCCCCHHHHHCCHHHHHHHHHHHCCCEEE
T ss_conf             68789996681999999999998399589997846457825885885677289997131112999999999994989997


Q ss_pred             CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC--CCHHHHHHHHHCCCCHHHHHC
Q ss_conf             585313109766688984592162689899987218998877664224433243334--557999873200330122000
Q gi|254780268|r   80 PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE--VYPHTAMPIAKEIGFPVLVKA  157 (443)
Q Consensus        80 PGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~--~~~~ea~~~a~~iGyPviiKp  157 (443)
                      |||||||||++||++|+++||+||||++++|+.+|||..+|++|+++|||++||+..  .+.+++.++++++|||+||||
T Consensus        84 PGYGFLSEn~~Fa~~~~~~gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvpgs~~~~~~~~~~~~~a~~iGyPv~iKA  163 (1147)
T PRK12999         84 PGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGTEGPIDDLEEALEFAEEIGYPLMLKA  163 (1147)
T ss_pred             CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             79622007999999999878999894999999855999999999983989888989988999999999987199789997


Q ss_pred             CCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             23457821688875066899999875432125899816884434201103315777347870236566542113562255
Q gi|254780268|r  158 SAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIW  237 (443)
Q Consensus       158 ~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkii  237 (443)
                      +.||||||||+|++++||.++|++|++||+++|||+.||+||||+++|||||||+||++||++||+|||||+||||||+|
T Consensus       164 ~~GGGGrGmrvv~~~~~l~~~~~~a~~EA~~aFG~~~v~~Ek~i~~~rHiEvQilgD~~Gnvvhl~eRdCSiQRR~QKvi  243 (1147)
T PRK12999        164 SAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKVV  243 (1147)
T ss_pred             CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEECCCCCCHHHCCCEEE
T ss_conf             77898051489589899999999999999983699756885503678647999996288988871476564322351357


Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             4034455889999999999999886515434102458972-883499822765433201678863256201123222102
Q gi|254780268|r  238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASEN  316 (443)
Q Consensus       238 EeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~  316 (443)
                      ||||||.|++++|++|.++|+++++++||+|+||||||+| +++||||||||||||||||||++||+|||++||+||.|+
T Consensus       244 EeaPap~l~~~~r~~l~~~A~~~a~~v~Y~~aGTvEFL~d~~~~fyFiE~N~RlQVEH~VTE~vtGiDlV~~Qi~iA~G~  323 (1147)
T PRK12999        244 EIAPAPGLSPELREEICEAAVKLARAVGYVNAGTVEFLVDADGNFYFIEVNPRIQVEHTVTEMVTGIDIVQSQILIAEGA  323 (1147)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCHHHEECCCHHHHHHHHHCCC
T ss_conf             86689999999999999999999997697643227899838887899986656564565302101550899999985799


Q ss_pred             CCC------CCCCCCCCCHHHHHHHCCCCCCC-CCCCCCCCEEEEECCCCCCEEEECC-CCCCCEECCCCCCCEEEEEEE
Q ss_conf             222------21133332012453302456622-1111244215886689984467776-023877077768433899995
Q gi|254780268|r  317 RLS------VQQKDITFSGHAIECRINAEDPE-NFIPNPGEITYFHAPGGLGIRMDSA-SYQGYTVPSYYDSLIAKLIVH  388 (443)
Q Consensus       317 ~l~------~~~~~i~~~g~aie~Ri~aEdp~-~f~Ps~G~i~~~~~p~~~gvRvDt~-~~~G~~i~~~yDsmlaKiI~~  388 (443)
                      +|+      +.|++|.++|||||||||||||. ||+|++|+|+.|++|+|+|||+|+| .++|++|||||||||+|+|+|
T Consensus       324 ~L~~~~~~~~~Q~~i~~~G~Aie~Ri~aEdp~~~F~P~~G~i~~~~~p~G~gvR~D~g~~~~G~~v~p~yDsllaK~i~~  403 (1147)
T PRK12999        324 TLGDLEVGIPSQEDIRLRGHAIQCRITTEDPANNFMPDTGRITAYRSPGGFGVRLDGGNAYAGAVITPYYDSLLVKLTTW  403 (1147)
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCHHHHHEEE
T ss_conf             75667678775446776648999998611775256788774037846999998967786767896688757042522266


Q ss_pred             CCCHHHHHHHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHH
Q ss_conf             5998999999998765408826377888999896898895588653168751
Q gi|254780268|r  389 GKNRKECMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENK  440 (443)
Q Consensus       389 g~~R~~Ai~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~  440 (443)
                      |+||++|++||.|||+|+.|+||+||++||++||+||+|++|+++|+|||+|
T Consensus       404 g~~r~~ai~r~~raL~e~~i~Gv~Tni~fl~~vl~~~~F~~g~~~T~fid~~  455 (1147)
T PRK12999        404 GRTFEEAIARMDRALREFRIRGVKTNIPFLENVLKHPDFLAGDYTTSFIDET  455 (1147)
T ss_pred             CCCHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHCCCCEECCCCCCCCCCCC
T ss_conf             6989999999999864239979767999999985792401578602102089


No 6  
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00  E-value=0  Score=1247.65  Aligned_cols=443  Identities=54%  Similarity=0.908  Sum_probs=436.2

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf             97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP   80 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP   80 (443)
                      ||+|||||||||||||+|||||+|||.||+||||+|++++||++|||+|+|||.+..+||||+++||++|+++|+|||||
T Consensus         1 mf~KiLIANRGEIAcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHP   80 (645)
T COG4770           1 MFSKILIANRGEIACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHP   80 (645)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCHHHHCCCCCHHHHHCCHHHHHHHHHHHCCCCCCC
T ss_conf             96248872464346899999998099569997257778526664122443179960121226889999999738321368


Q ss_pred             CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC--CHHHHHHHHHCCCCHHHHHCC
Q ss_conf             853131097666889845921626898999872189988776642244332433345--579998732003301220002
Q gi|254780268|r   81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV--YPHTAMPIAKEIGFPVLVKAS  158 (443)
Q Consensus        81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~--~~~ea~~~a~~iGyPviiKp~  158 (443)
                      ||||||||++||++|+++|++||||++++|+.||||+.+|++|.++|||++||+...  +.+++..++++|||||+||++
T Consensus        81 GYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAs  160 (645)
T COG4770          81 GYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKAS  160 (645)
T ss_pred             CCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             84212359899999997791897889799998446799999999749980689787445899999999863985899963


Q ss_pred             CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             34578216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r  159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE  238 (443)
Q Consensus       159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE  238 (443)
                      .|||||||++|++++|+.++|++|++||+++|||++||||||++.|||||+||++|+|||++||||||||+||||||+||
T Consensus       161 aGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQKVIE  240 (645)
T COG4770         161 AGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIE  240 (645)
T ss_pred             CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCEEEEEEEECCCCCEEEEECCCCCHHHHCCHHHH
T ss_conf             68997753762688999999999999988504886476245517874489999862778788863253324231122320


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf             034455889999999999999886515434102458972-8834998227654332016788632562011232221022
Q gi|254780268|r  239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENR  317 (443)
Q Consensus       239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~  317 (443)
                      |||||+|++++|++|.+.|+++++++||.|+|||||++| ++.||||||||||||||||||++||+|||+|||++|.|++
T Consensus       241 EAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQVEHPVTE~iTGiDLVewqiRVA~Gek  320 (645)
T COG4770         241 EAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQVEHPVTELITGIDLVEWQIRVASGEK  320 (645)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEECCEECCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             08999999999999999999999862977575589998389868999862202025641224201389999999743885


Q ss_pred             CCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHH
Q ss_conf             222113333201245330245662-2111124421588668998446777602387707776843389999559989999
Q gi|254780268|r  318 LSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECM  396 (443)
Q Consensus       318 l~~~~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai  396 (443)
                      |++.|++++.+|||||+||||||| +||+|++|+|++|++|.+++||+|||+.+|++||+||||||||||+||+||++|+
T Consensus       321 L~~~Q~di~l~GhAiE~RiyAEDp~r~FLPs~G~l~~~~~P~~~~vRvDsGV~~G~~Is~~YDpMiAKLi~~G~dR~eAl  400 (645)
T COG4770         321 LPFTQDDIPLNGHAIEARIYAEDPARGFLPSTGRLTRYRPPAGPGVRVDSGVREGDEISPFYDPMIAKLIVHGADREEAL  400 (645)
T ss_pred             CCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf             77665665446505788873347555766788505766288888431236743387235553558888864388899999


Q ss_pred             HHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHCCC
Q ss_conf             99998765408826377888999896898895588653168751069
Q gi|254780268|r  397 MRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKYLK  443 (443)
Q Consensus       397 ~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~~~  443 (443)
                      ++|.+||+++.|.|+.||++||+.++.||.|+.|+.+|.||.++|.+
T Consensus       401 ~rl~~AL~~~~v~Gi~tn~~Fl~al~~~~~F~~g~~~T~~i~r~~~~  447 (645)
T COG4770         401 DRLRRALAEFEVEGIATNIPFLRALMADPRFRGGDLDTGFIAREIED  447 (645)
T ss_pred             HHHHHHHHHHEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCC
T ss_conf             99999998608447414699999985296400477763021110234


No 7  
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00  E-value=0  Score=1230.51  Aligned_cols=443  Identities=52%  Similarity=0.871  Sum_probs=436.7

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf             97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP   80 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP   80 (443)
                      ||||||||||||||+||+|||||||++||+|||++|++++|+++||++|+|+++++.+||||+++||++|++++||||||
T Consensus         1 M~~kvLIANRGEIA~Ri~rt~~elgi~tvavys~~D~~a~hv~~Ade~v~ig~~~~~~sYln~~~Ii~~A~~~g~dAIHP   80 (449)
T PRK06111          1 MFQKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADEDALHVKLADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHP   80 (449)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHHCCCHHHHHCCEEEEECCCCHHHHHCCHHHHHHHHHHHCCCEEEC
T ss_conf             97618998787999999999998499799991736456835874989888089974543339999999999839999977


Q ss_pred             CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC--CCHHHHHHHHHCCCCHHHHHCC
Q ss_conf             85313109766688984592162689899987218998877664224433243334--5579998732003301220002
Q gi|254780268|r   81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE--VYPHTAMPIAKEIGFPVLVKAS  158 (443)
Q Consensus        81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~--~~~~ea~~~a~~iGyPviiKp~  158 (443)
                      ||||||||++||++|+++|++||||++++|+.||||..+|++|+++|||++||+..  .+.+++.+++++|||||||||+
T Consensus        81 GYGFLSEna~FA~~~~~~gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvPG~~~~~~~~~ea~~~a~~iGyPvliKAa  160 (449)
T PRK06111         81 GYGLLSENASFAERCKEEGIVFIGPSAEIIAKMGSKIEARRAMQAAGVPVVPGITTALEDAEEAIAIARQIGYPVMLKAS  160 (449)
T ss_pred             CCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             98731169899999998899899929999998648699999999839985578677789999999999865980266203


Q ss_pred             CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             34578216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r  159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE  238 (443)
Q Consensus       159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE  238 (443)
                      +|||||||++|++++||.++|+.+++||+++|||+.||+||||+++|||||||++|++||++||||||||+||||||+||
T Consensus       161 ~GGGGrGmriv~~~~el~~~~~~~~~eA~~~Fg~~~v~iEk~i~~~RHIEVQvl~D~~Gn~vhlgeRdCSiQRr~QKviE  240 (449)
T PRK06111        161 AGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYLEKYIEDARHIEIQLLADTHGNTVYLWERECSVQRRHQKVIE  240 (449)
T ss_pred             CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCEEE
T ss_conf             58986720895799999999999999999863996025544135773379999970688888830512266357741699


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf             034455889999999999999886515434102458972-8834998227654332016788632562011232221022
Q gi|254780268|r  239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENR  317 (443)
Q Consensus       239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~  317 (443)
                      |||||.|+++++++|.++|+++++++||+|+||||||+| +++||||||||||||||||||++||+|||++|+++|.|.+
T Consensus       241 eaPap~l~~~~r~~~~~~A~~la~~v~Y~g~gTvEFl~d~~~~fyFlEvNtRlQVEHpVTE~vtGiDLV~~Qi~iA~G~~  320 (449)
T PRK06111        241 EAPSPFLDEETRKAMGEAAVQAAKAIGYTNAGTIEFLVDNQKNFYFLEMNTRLQVEHPVTEEITGIDLVEQQLRIAAGEK  320 (449)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHCCCC
T ss_conf             78999999999999999999998871710246899999489868999534354446640455538848999999867998


Q ss_pred             CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHH
Q ss_conf             22211333320124533024566221111244215886689984467776023877077768433899995599899999
Q gi|254780268|r  318 LSVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMM  397 (443)
Q Consensus       318 l~~~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~  397 (443)
                      |+++|+++.++|||||||||||||++|.||+|+|+.|++|+|+|||+||+++.|++|||+|||||||||+||+||++|++
T Consensus       321 L~~~q~~i~~~GhAIe~Ri~AEdp~~f~Ps~G~i~~~~~P~g~gvRvDs~~~~G~~v~~~yDsmlaKlI~~g~~R~~Ai~  400 (449)
T PRK06111        321 LSFTQDDIKRSGHAIEVRIYAEDPKTFFPSPGKITDLTLPGGEGVRHDHAVENGVTVTPFYDPMIAKVIAHGETREEAIA  400 (449)
T ss_pred             CCCCHHHCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCEECCCCCCHHHEEEEECCCHHHHHH
T ss_conf             99896666856120555551378565789986999998489998888536668597088756533256798799999999


Q ss_pred             HHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHCCC
Q ss_conf             9998765408826377888999896898895588653168751069
Q gi|254780268|r  398 RLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKYLK  443 (443)
Q Consensus       398 ~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~~~  443 (443)
                      ||.+||+++.|.|++||++||++||++|+|++|+++|+|||+|++|
T Consensus       401 rl~~aL~e~~I~Gv~Tni~~l~~il~~~~f~~g~~~T~~l~~~l~~  446 (449)
T PRK06111        401 RLHDALEELKVEGIKTNIPLLLQILEDPVFKKGGYTTGFLTKQLVK  446 (449)
T ss_pred             HHHHHHHCCEEECCCCCHHHHHHHHCCHHHCCCCCCHHHHHHHHHH
T ss_conf             9999985169989438599999985884330799550699986465


No 8  
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00  E-value=0  Score=1228.60  Aligned_cols=440  Identities=56%  Similarity=0.964  Sum_probs=434.7

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf             97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP   80 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP   80 (443)
                      ||||||||||||||+||+||||||||+||+|||++|++++|+++||++|+||++++.+||||+++|+++|+++++|||||
T Consensus         1 Mf~kvLIANRGEIA~RiiRa~relGi~tVaVyS~~D~~s~hv~~ADe~~~ig~~~~~~sYLni~~Ii~~A~~~g~dAIhP   80 (497)
T PRK08654          1 MFKKILIANRGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNMERILEVAKKAGAEAIHP   80 (497)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHCCCCHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEC
T ss_conf             97608998787999999999998599399988837854899788898998489883212168999999999809999957


Q ss_pred             CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHCCCCHHHHHCC
Q ss_conf             8531310976668898459216268989998721899887766422443324333--45579998732003301220002
Q gi|254780268|r   81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG--EVYPHTAMPIAKEIGFPVLVKAS  158 (443)
Q Consensus        81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~--~~~~~ea~~~a~~iGyPviiKp~  158 (443)
                      ||||||||++||++|+++||+||||++++|+.+|||..+|++|+++|||++||+.  ..+.+++.+++++|||||||||+
T Consensus        81 GYGFLSEn~~fA~~~~~~Gi~fIGP~~~~I~~~GDK~~ar~la~~~gVPvvPG~~~~v~~~~ea~~~A~~IGyPV~iKAs  160 (497)
T PRK08654         81 GYGFLSENPKFAKACEKEGITFIGPSSNVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEVAEEIGYPVIIKAS  160 (497)
T ss_pred             CHHHHHHCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             77675548999999998799999939999998658899999999809986899756679999999999864984587652


Q ss_pred             CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             34578216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r  159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE  238 (443)
Q Consensus       159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE  238 (443)
                      +|||||||++|++++||.++|++++++|.++|||++|||||||+++|||||||++|++||++|+||||||+||||||+||
T Consensus       161 ~GGGGrGmriV~~~~eL~~~~~~a~~eA~~~fgd~~v~iEk~i~~~RHIEVQvl~D~~GnvihlgeRdCSiQRr~QKvIE  240 (497)
T PRK08654        161 AGGGGIGMRVVYNEEELEEAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQVLADKHGNVIHLGDRECSIQRRHQKLIE  240 (497)
T ss_pred             CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEECCEECCEEECCCCEEE
T ss_conf             68888865899602568999999999988745998457988415553789999984479786714602343626863699


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf             03445588999999999999988651543410245897288349982276543320167886325620112322210222
Q gi|254780268|r  239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRL  318 (443)
Q Consensus       239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l  318 (443)
                      |||||.|+++++++|.++|+++++++||+|+|||||++|+|+||||||||||||||||||++||+|||++|+++|.|.+|
T Consensus       241 eaPap~l~~~~r~~m~~~Av~la~~vgY~gaGTVEFl~d~g~fyFlEmNtRlQVEHpVTE~vTGiDLV~~Qi~iA~G~~L  320 (497)
T PRK08654        241 EAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSNGNFYFLEMNTRLQVEHPITEMVTGIDIVKEQIKIAAGEKL  320 (497)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHCEECCCEEEEEEECCEEEEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHCCCCC
T ss_conf             78999898899999999999988873430233279987488399996124422455421666087199999998679988


Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHH
Q ss_conf             22113333201245330245662-21111244215886689984467776023877077768433899995599899999
Q gi|254780268|r  319 SVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMM  397 (443)
Q Consensus       319 ~~~~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~  397 (443)
                      ++.|+++.++||||||||||||| .+|.|++|+|+.|++|+|+|||+||+++.|++|||+|||||||+|+||+||++|++
T Consensus       321 ~~~q~~i~~~GhAIe~Ri~AEdP~~~F~Ps~G~i~~~~~P~g~gvRvD~~v~~G~~v~~~yDsmlaKli~~g~~R~~Ai~  400 (497)
T PRK08654        321 SFKQEDITIRGHAIECRINAEDPLNDFAPSPGKIKRYRSPGGPGVRVDSGVHMGYTIPPYYDSMISKLIVWGRTREEAIA  400 (497)
T ss_pred             CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCHHCEEEEECCCHHHHHH
T ss_conf             91003777751399998103588878645873660797599998899645646897388654333036798899999999


Q ss_pred             HHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHH
Q ss_conf             9998765408826377888999896898895588653168751
Q gi|254780268|r  398 RLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENK  440 (443)
Q Consensus       398 ~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~  440 (443)
                      ||.+||+++.|.|++||++||++||++|+|++|+++|+|||+|
T Consensus       401 r~~rAL~e~~I~Gv~Tni~~l~~il~~~~F~~g~~~T~fle~~  443 (497)
T PRK08654        401 RMKRALYEYIILGVKTNIPFHKAVMRNPNFIRGNLHTHFIEEL  443 (497)
T ss_pred             HHHHHHHCCEEECCCCCHHHHHHHHCCCCEECCCCCCHHHHCC
T ss_conf             9999985469989548799999985790200799734267448


No 9  
>PRK07178 acetyl-CoA carboxylase; Validated
Probab=100.00  E-value=0  Score=1221.43  Aligned_cols=440  Identities=50%  Similarity=0.841  Sum_probs=432.4

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf             97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP   80 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP   80 (443)
                      ||||||||||||||+||+||||||||+||+|||++|++|+|+++||++|+|++ .+.+||||+++||++|++++||||||
T Consensus         1 M~~kvLIANRGEIA~RiiRt~~elgi~tVavys~~D~~a~hv~~ADea~~ig~-~~~~sYln~~~Ii~~A~~~g~dAiHP   79 (471)
T PRK07178          1 MIKKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAHSIGA-DPLAGYLNPRKLVNLAVETGCDALHP   79 (471)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHCCEEEECCC-CHHHHHCCHHHHHHHHHHHCCCEEEC
T ss_conf             97608997786999999999998399489990837566836884888887188-72665449999999999969999977


Q ss_pred             CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC--CCHHHHHHHHHCCCCHHHHHCC
Q ss_conf             85313109766688984592162689899987218998877664224433243334--5579998732003301220002
Q gi|254780268|r   81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE--VYPHTAMPIAKEIGFPVLVKAS  158 (443)
Q Consensus        81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~--~~~~ea~~~a~~iGyPviiKp~  158 (443)
                      ||||||||++||++|+++|++||||++++|+.+|||..+|++|.++|||++||+..  .+.+++.++++++|||||+||+
T Consensus        80 GYGFLSEn~~FA~~~~~~gi~FIGPs~~~i~~~GdK~~ar~~a~~~gvPv~pgs~~~v~~~eea~~~A~~iGyPV~lKAa  159 (471)
T PRK07178         80 GYGFLSENAELAEICAERGIKFIGPSADVIRRMGDKTEARRSMIKAGVPVTPGSEGNLADIDEALAEAERIGYPVMLKAT  159 (471)
T ss_pred             CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             83331159899999997899899959999998748398999999869982689688656699999999866981586320


Q ss_pred             CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             34578216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r  159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE  238 (443)
Q Consensus       159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE  238 (443)
                      +|||||||++|++++||.++|+++++|++++|||++||+|||++++|||||||++|++||++||+|||||+||||||+||
T Consensus       160 ~GGGGrGmrvv~~~~el~~~~~~~~~EA~~aFg~~~v~lEk~i~~~RHIEVQilgD~~Gnvihl~eRdCSiQRr~QKvIE  239 (471)
T PRK07178        160 SGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSFGNVVHLFERDCSIQRRNQKLIE  239 (471)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCCEEE
T ss_conf             26876644997660568899999999999844997368766046762899999980789888884123465107873278


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf             03445588999999999999988651543410245897288349982276543320167886325620112322210222
Q gi|254780268|r  239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRL  318 (443)
Q Consensus       239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l  318 (443)
                      |||||.|+++++++|.++|+++++++||+|+||||||+++++||||||||||||||||||++||+|||++||++|.|.+|
T Consensus       240 eaPa~~l~~~~r~~l~~~A~~la~~v~Y~gaGTvEFlv~~~~~yFlEvNtRlQVEH~VTE~vtGiDLV~~Qi~iA~G~~L  319 (471)
T PRK07178        240 IAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLADGEVYFMEMNTRVQVEHTITEEITGIDIVREQIRIASGLPL  319 (471)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf             76999888999999988999999964865012699998679479983246665554213666167589999998679978


Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCC-CCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHH
Q ss_conf             221133332012453302456622-1111244215886689984467776023877077768433899995599899999
Q gi|254780268|r  319 SVQQKDITFSGHAIECRINAEDPE-NFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMM  397 (443)
Q Consensus       319 ~~~~~~i~~~g~aie~Ri~aEdp~-~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~  397 (443)
                      ++.|+++.++|||||||||||||. +|+||+|+|+.|++|+|+|||+||++++|++|||+|||||||||+||+||++|++
T Consensus       320 ~~~q~~i~~~GhAIe~Ri~AEDp~~~F~Ps~G~i~~~~~P~g~gvR~Dt~~~~G~~v~~~yDsmlaKli~~g~~R~~Ai~  399 (471)
T PRK07178        320 SVKQEDIQHRGFALQFRINAEDPKNNFLPSFGKITRYYAPGGPGVRTDTAIYTGYTIPPYYDSMCLKLIVWALTWEEALD  399 (471)
T ss_pred             CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCEECCCCCCHHHHHEEECCCHHHHHH
T ss_conf             83102445588589999851377668656872577897699998898667768896188744253610488899999999


Q ss_pred             HHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHC
Q ss_conf             99987654088263778889998968988955886531687510
Q gi|254780268|r  398 RLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKY  441 (443)
Q Consensus       398 ~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~  441 (443)
                      ||++||+++.|.|++||++||++||++|+|++|+++|+|||+|.
T Consensus       400 rl~~aL~e~~I~Gv~Tni~~l~~il~~~~F~~g~~~T~fle~~~  443 (471)
T PRK07178        400 RGLRALDDMRVQGVKTTAPYYQEILRNPEFRSGQFNTSFVESHP  443 (471)
T ss_pred             HHHHHHHCCEEECCCCCHHHHHHHHCCHHHCCCCCCCCHHHCCH
T ss_conf             99998626599794686999999867811227995010341797


No 10 
>PRK05586 biotin carboxylase; Validated
Probab=100.00  E-value=0  Score=1219.23  Aligned_cols=442  Identities=60%  Similarity=1.013  Sum_probs=435.8

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf             97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP   80 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP   80 (443)
                      ||||||||||||||+||+|||++|||+||+|||++|++++|+++||++|+|+++.+.+||||+++|+++|+++++|||||
T Consensus         1 M~~kvLIANRGEIA~Ri~rt~~~lgi~tVavys~~D~~a~hv~~Ade~~~lg~~~~~~sYln~~~ii~~A~~~g~dAihP   80 (447)
T PRK05586          1 MFKKILIANRGEIAVRIIRACREMGIETVAVYSEIDKDALHVQLADEAVCIGPASSKDSYLNIYNILSATVLTGAQAIHP   80 (447)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCHHHHHCCHHHHHHHHHHHCCCEEEC
T ss_conf             97549998987999999999998399599991703367854764989987399995651148999999999849989971


Q ss_pred             CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHCCCCHHHHHCC
Q ss_conf             8531310976668898459216268989998721899887766422443324333--45579998732003301220002
Q gi|254780268|r   81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG--EVYPHTAMPIAKEIGFPVLVKAS  158 (443)
Q Consensus        81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~--~~~~~ea~~~a~~iGyPviiKp~  158 (443)
                      ||||||||++||++|+++|++||||++++|+.||||..+|++|+++|||++||+.  ..+.++++++++++|||||+||+
T Consensus        81 GYGFLSEna~Fa~~~~~~Gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPv~pg~~~~v~~~~ea~~~a~~iGyPv~lKAa  160 (447)
T PRK05586         81 GFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMKKAGVPVVPGSEGEIENEEEALKIAEEIGYPVMVKAS  160 (447)
T ss_pred             CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf             85532238999999998798798959999998538499999999849976568688889999999999862982376305


Q ss_pred             CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             34578216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r  159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE  238 (443)
Q Consensus       159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE  238 (443)
                      +|||||||++|++++||.++|+.+++||+++|||+++|+||||+++|||||||++|++||++||||||||+||||||+||
T Consensus       161 ~GGGGrGmriv~~~~el~~~~~~a~~ea~~aFg~~~v~vEk~i~~~RHIEVQvl~D~~Gn~vhlgeRdCSiQRr~QKvIE  240 (447)
T PRK05586        161 AGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPRHIEFQILGDNYGNVVHLGERDCSLQRRNQKVLE  240 (447)
T ss_pred             CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCEEE
T ss_conf             69997736998999999999999999999827998468877247871799999970799888840642466568863799


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf             034455889999999999999886515434102458972-8834998227654332016788632562011232221022
Q gi|254780268|r  239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENR  317 (443)
Q Consensus       239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~  317 (443)
                      |||||.|+++++++|.++|+++++++||+|+||||||+| +++||||||||||||||||||++||+|||++|+++|+|.+
T Consensus       241 eaPap~l~~~~r~~m~~~A~~la~~vgY~gaGTvEFl~d~~~~fyFlEvNtRlQVEH~VTE~vtGvDLV~~Qi~iA~G~~  320 (447)
T PRK05586        241 EAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKIAYGEK  320 (447)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEECCCCCHHHHHHHHHCCCC
T ss_conf             88999888999999999999888860603332478887589978999334355556641100037768999999867999


Q ss_pred             CCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHH
Q ss_conf             222113333201245330245662-2111124421588668998446777602387707776843389999559989999
Q gi|254780268|r  318 LSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECM  396 (443)
Q Consensus       318 l~~~~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai  396 (443)
                      |++.|+++.++||||||||||||| ++|.|++|+|+.|++|+|+|||+||+++.|+++|++|||||||+|+||+||++|+
T Consensus       321 L~~~q~~i~~~GhAIe~Ri~AEdp~~~f~Ps~G~i~~~~~P~g~gvRvDt~~~~G~~v~~~yDsllaK~I~~g~~R~~Ai  400 (447)
T PRK05586        321 LSITQEDIKINGHAIECRINAEDPENGFMPCPGKIEELYIPGGLGVRLDSAIYSGYTIPPYYDSMIGKLIVYGKDREEAI  400 (447)
T ss_pred             CCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCHHCEEEEECCCHHHHH
T ss_conf             99770107878569999821457887850587566589769999889878745879648864622324779889999999


Q ss_pred             HHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHCC
Q ss_conf             9999876540882637788899989689889558865316875106
Q gi|254780268|r  397 MRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKYL  442 (443)
Q Consensus       397 ~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~~  442 (443)
                      +||.+||+++.|.|++||++||+++|++|+|++|+++|+|||+|++
T Consensus       401 ~rl~~aL~~~~i~Gv~Tni~~l~~il~~~~F~~g~~~T~fle~~l~  446 (447)
T PRK05586        401 QKMKRALGEFIIEGVKTNIDFQFIILENENFIKGTYDTSFIEKKLV  446 (447)
T ss_pred             HHHHHHHHCCEEECCCCCHHHHHHHHCCHHHCCCCCCCHHHHHHCC
T ss_conf             9999998437997934879999998679302079831158775378


No 11 
>PRK08463 acetyl-CoA carboxylase; Validated
Probab=100.00  E-value=0  Score=1221.37  Aligned_cols=442  Identities=49%  Similarity=0.823  Sum_probs=432.3

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf             97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP   80 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP   80 (443)
                      ||||||||||||||+||+||||||||+||+|||++|++|+|+++||++|++|+ .+.+||||+++||++|+++++|||||
T Consensus         1 M~~kvLIANRGEIA~Riirt~relgi~tVavys~~D~~s~hv~~Adea~~lg~-~~~~sYLn~~~Ii~~A~~~gadAiHP   79 (478)
T PRK08463          1 MIHKILIANRGEIAVRIIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGT-DPIKGYLDVKRIVEIAKACGADAIHP   79 (478)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHCCCCHHHHCCEEEECCC-CHHHHHCCHHHHHHHHHHHCCCEEEC
T ss_conf             97617896686999999999998399789997857657834775787665288-73453069999999999849999936


Q ss_pred             CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC---CHHHHHHHHHCCCCHHHHHC
Q ss_conf             853131097666889845921626898999872189988776642244332433345---57999873200330122000
Q gi|254780268|r   81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV---YPHTAMPIAKEIGFPVLVKA  157 (443)
Q Consensus        81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~---~~~ea~~~a~~iGyPviiKp  157 (443)
                      ||||||||++||++|+++|++||||++++|+.+|||..+|++|.++|||++||+...   +.+++.++++++|||||+||
T Consensus        80 GYGFLSEna~FA~~~~~~Gi~FIGPs~~~i~~~GdK~~Ar~~a~~~gVPvvpg~~~~~~~~~~~~~~~a~~iGyPv~lKA  159 (478)
T PRK08463         80 GYGFLSENYEFAKAVEDAGLIFIGPKSEVIRKMGNKNIARKLMAKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKA  159 (478)
T ss_pred             CCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             87623469999999997899899949999999864899999999839984667677887679999999986598047840


Q ss_pred             CCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             23457821688875066899999875432125899816884434201103315777347870236566542113562255
Q gi|254780268|r  158 SAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIW  237 (443)
Q Consensus       158 ~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkii  237 (443)
                      ++|||||||++|++++||.++|+++++||+++|||+.||+||||+++|||||||+||++||++||||||||+||||||+|
T Consensus       160 ~~GGGGrGmrvv~~~~el~~~~~~a~~ea~~~Fg~~~v~iEk~i~~~RHiEVQvlgD~~Gnvi~l~eRdCSiQRr~QKvi  239 (478)
T PRK08463        160 SGGGGGRGIRVVWKEEDLENAFESCKREAKAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVI  239 (478)
T ss_pred             CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCEEE
T ss_conf             35999871178557899999999999999984699854788750245178999986179978896305134334675168


Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             4034455889999999999999886515434102458972-883499822765433201678863256201123222102
Q gi|254780268|r  238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASEN  316 (443)
Q Consensus       238 EeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~  316 (443)
                      ||||||.|+++++++|.++|+++++++||+|+||||||+| +++||||||||||||||||||++||+|||++|+++|.|.
T Consensus       240 EeaPap~l~~~~r~~m~~~A~~la~~v~Y~~aGTvEFL~d~~~~fyFlEmNtRlQVEHpVTE~vTGvDLV~~Qi~iA~G~  319 (478)
T PRK08463        240 EIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNNFYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIAAGE  319 (478)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCEECCCCHHHHHHHHHCCC
T ss_conf             96699987889999998899876663051665338988838997899960755455665411003886899999986799


Q ss_pred             CCCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHH
Q ss_conf             2222113333201245330245662-211112442158866899844677760238770777684338999955998999
Q gi|254780268|r  317 RLSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKEC  395 (443)
Q Consensus       317 ~l~~~~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~A  395 (443)
                      +|++.|+++.++||||||||||||| ++|+||+|+|+.|.+|+|+|||+||+++.|++||++|||||||||+||+||++|
T Consensus       320 ~L~~~q~~i~~~GhAIE~RI~AEdp~~~F~Ps~G~i~~~~~p~g~gvRvDs~~~~G~~v~~~yDsmiaKlI~~g~~R~~A  399 (478)
T PRK08463        320 ILDLEQSDIKPRGFAIEARITAENVWKNFIPSPGKITGYYPALGPSVRVDSHIYKDYTIPPFYDSMLAKLIVKATSYDLA  399 (478)
T ss_pred             CCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCHHHCEEEEECCCHHHH
T ss_conf             88854003466745999998514776674658748878972899998980886786980897570453488988999999


Q ss_pred             HHHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHCCC
Q ss_conf             999998765408826377888999896898895588653168751069
Q gi|254780268|r  396 MMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKYLK  443 (443)
Q Consensus       396 i~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~~~  443 (443)
                      ++||.+||+++.|.||+||++||++||++|+|++|+++|+|||+|+.|
T Consensus       400 i~rl~~AL~e~~I~Gv~Tni~~l~~il~~~~F~~g~~~T~fle~~~~e  447 (478)
T PRK08463        400 VNKLERALKEFTIEGVRTTIPFLIAISKTREFRRGYFDTSYIETHMQE  447 (478)
T ss_pred             HHHHHHHHHCCEEECCCCCHHHHHHHHCCCCEECCCCCCHHHHHHHHH
T ss_conf             999999972669989558599999986791422799621277640786


No 12 
>PRK08462 biotin carboxylase; Validated
Probab=100.00  E-value=0  Score=1203.44  Aligned_cols=440  Identities=53%  Similarity=0.894  Sum_probs=432.8

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf             97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP   80 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP   80 (443)
                      .|||||||||||||+||+|||||||++||+|||++|++++|+++||++++|++.++.+||||+++||++|+++++|||||
T Consensus         3 ~~kkvLIANRGEIA~Ri~ra~~elgi~tVavys~~D~~a~~v~~ad~~~~ig~~~~~~sYln~~~Ii~~a~~~~~dAihP   82 (446)
T PRK08462          3 ELKRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFP   82 (446)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEC
T ss_conf             78889998960999999999998299699993767716762875989898289984334148999999999959198986


Q ss_pred             CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHCCCCHHHHHCC
Q ss_conf             8531310976668898459216268989998721899887766422443324333--45579998732003301220002
Q gi|254780268|r   81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG--EVYPHTAMPIAKEIGFPVLVKAS  158 (443)
Q Consensus        81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~--~~~~~ea~~~a~~iGyPviiKp~  158 (443)
                      ||||||||++||++|+++|++||||++++|+.+|||..+|++|+++|||++||+.  ..+.+++.+++++|||||||||+
T Consensus        83 GyGfLSEn~~fa~~~~~~Gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvpg~~~~v~~~~ea~~~a~~iGyPV~lKas  162 (446)
T PRK08462         83 GYGFLSENQNFVEICSHHSIKFIGPSVEVMALMSDKSKAKQVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAA  162 (446)
T ss_pred             CCHHHHHCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf             82055408799999997799898959999998409598999999859980678678779999999999972995687632


Q ss_pred             CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             34578216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r  159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE  238 (443)
Q Consensus       159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE  238 (443)
                      +|||||||++|++++||.++|+++.+||+++|||++||+||||+++|||||||++|++||++||+|||||+||||||+||
T Consensus       163 ~GGGGrGmriv~~~~el~~~~~~a~~ea~~~fg~~~v~vEk~i~~~rHIEvQvl~D~~Gn~ihl~eRdCSiQRr~QKviE  242 (446)
T PRK08462        163 AGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSMQRRHQKLIE  242 (446)
T ss_pred             CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCEEE
T ss_conf             78998742895767999999999987788605888669998503550789998852899888853212366346787589


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             034455889999999999999886515434102458972--883499822765433201678863256201123222102
Q gi|254780268|r  239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE--NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASEN  316 (443)
Q Consensus       239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~--~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~  316 (443)
                      |||||.|+++++++|.++|+++++++||+|+|||||++|  +++||||||||||||||||||++||+|||++|+++|.|.
T Consensus       243 eaPa~~l~~~~r~~m~~~A~~la~~vgY~gaGTvEFl~d~~~~~fyFlE~NtRlQVEH~VTE~vtGiDLV~~Qi~iA~G~  322 (446)
T PRK08462        243 ESPAVVLDEKTRERLLETAIKAAKAIGYVGAGTFEFLLDSNMKDFYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGE  322 (446)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEECCCCEECCCCCCCCCCCHHHHHHHHHCCC
T ss_conf             78999899899999888999999864836543389998079971899974334210011112214877999999986799


Q ss_pred             CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHH
Q ss_conf             22221133332012453302456622111124421588668998446777602387707776843389999559989999
Q gi|254780268|r  317 RLSVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECM  396 (443)
Q Consensus       317 ~l~~~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai  396 (443)
                      +| +.|+++.++|||||||||||||++|+|++|+|+.|++|+|+|||+||++++|+.||++|||||||||+||+||++|+
T Consensus       323 ~l-~~q~~i~~~GhaIe~Ri~AEdp~~F~Ps~G~i~~~~~P~g~gvRvDt~~~~G~~v~~~yDsmlaKlI~~g~~R~~Ai  401 (446)
T PRK08462        323 EL-PSQESIKLKGHAIECRITAEDPKKFYPSPGKITKWIAPGGRNVRMDSHAYAGYVVPPYYDSMIGKLIVWGEDRNRAI  401 (446)
T ss_pred             CC-CCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCEECCCCCCHHHEEEEECCCHHHHH
T ss_conf             98-75666672643422342045877679987588789879999989638877859879765574135889899999999


Q ss_pred             HHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHC
Q ss_conf             999987654088263778889998968988955886531687510
Q gi|254780268|r  397 MRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKY  441 (443)
Q Consensus       397 ~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~  441 (443)
                      +||.+||+++.|.|++||++||++||++|+|++|+++|+|||+||
T Consensus       402 ~rl~~aL~e~~I~Gv~Tni~~l~~il~~~~F~~g~~~T~~l~~~~  446 (446)
T PRK08462        402 AKMKRALDEFKVEGIKTTIPFHLEMMENADFINNKYDTKYLEEHF  446 (446)
T ss_pred             HHHHHHHHCCEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHC
T ss_conf             999999844599893284999999857820107995211203229


No 13 
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00  E-value=0  Score=1204.10  Aligned_cols=441  Identities=51%  Similarity=0.874  Sum_probs=433.4

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf             70686644709999999988880965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r    2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG   81 (443)
Q Consensus         2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG   81 (443)
                      |||||||||||||+||+||||||||+||+|||++|++++|+++||++|+|++....+||||+++||++|+++++||||||
T Consensus         5 ikkvLIANRGEIA~Riirt~relgi~tVavys~~D~~~~hv~~ADeav~ig~~~~~~sYln~~~Ii~~A~~~g~dAiHPG   84 (458)
T PRK12833          5 IRTVLVANRGEIAVRVIRAAHELGMRAVAVVSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIHPG   84 (458)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEECC
T ss_conf             87899977869999999999983998999918576558358749999982898700132699999999998299999768


Q ss_pred             CCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHCCCCHHHHHCCC
Q ss_conf             531310976668898459216268989998721899887766422443324333--455799987320033012200023
Q gi|254780268|r   82 YGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG--EVYPHTAMPIAKEIGFPVLVKASA  159 (443)
Q Consensus        82 yGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~--~~~~~ea~~~a~~iGyPviiKp~~  159 (443)
                      |||||||++||++|+++||+||||++++|+.+|||..+|++|+++|||++||+.  ..+.+++.+++++||||+||||++
T Consensus        85 YGFLSEna~FA~~~~~~gi~fIGPs~~~i~~~GdK~~ar~~a~~~gvPvvpgs~~~v~~~~ea~~~a~~iGyPv~iKAs~  164 (458)
T PRK12833         85 YGFLSENAAFAAQVEAAGLIFVGPDAQVIATMGDKARARETARRAGVPTVPGSDGVVASLDAALEVAARIGYPVMIKAAA  164 (458)
T ss_pred             CCHHHHCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHCC
T ss_conf             66255299999999978998999499999985096999999998499966896676677999999998659754213325


Q ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             45782168887506689999987543212589981688443420110331577734787023656654211356225540
Q gi|254780268|r  160 GGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEE  239 (443)
Q Consensus       160 gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEe  239 (443)
                      |||||||++|++++||.++|+.|++|++++|||+.||+||||+++|||||||++|++ |++||+|||||+||||||+|||
T Consensus       165 GGGGrGmriv~~~~el~~~~~~a~~ea~~~Fg~~~v~iEk~i~~~RHIEVQvl~D~~-~~vhl~eRdCSiQRr~QKviEe  243 (458)
T PRK12833        165 GGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-NVVHLFERECSLQRRRQKILEE  243 (458)
T ss_pred             CCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEECCC-CEEEEEECCCCCCCCCCCEEEE
T ss_conf             899871079526411489999999999972699764787613675079999985478-7699850256565677755887


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf             34455889999999999999886515434102458972--8834998227654332016788632562011232221022
Q gi|254780268|r  240 AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE--NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENR  317 (443)
Q Consensus       240 aPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~--~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~  317 (443)
                      ||||.|+++++++|.++|+++++++||+|+||||||+|  +++||||||||||||||||||++||+|||++|+++|.|.+
T Consensus       244 aPsp~l~~~~r~~l~~~a~~la~~v~y~gagTvEFl~d~~~~~fyFlEvNtRlQVEH~VTE~vtGiDLV~~Qi~iA~G~~  323 (458)
T PRK12833        244 APSPSLTPAQRDALCASATRLARAVGYRGAGTLEYLFDDARGEFYFIEMNTRIQVEHPVTEAITGIDLVREMLRIADGEP  323 (458)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEHHHCCCCHHHHHHHHHCCCC
T ss_conf             79997899999999889999988533100002666786588968999621364444421223318859999999977997


Q ss_pred             CCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHH
Q ss_conf             222113333201245330245662-2111124421588668998446777602387707776843389999559989999
Q gi|254780268|r  318 LSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECM  396 (443)
Q Consensus       318 l~~~~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai  396 (443)
                      |++.|+++.++||||||||||||| ++|+|++|+|+.|++|+|+|||+||+++.|++||++|||||||+|+||+||++|+
T Consensus       324 L~~~q~~i~~~GhaIe~RI~AEdp~~~f~Ps~G~i~~~~~P~g~gvRvDt~v~~G~~v~~~yDsllaKlI~~g~~R~~Ai  403 (458)
T PRK12833        324 LRFAQGDIALRGAALECRINAEDPLQDFRPNPGRIDALVWPAGPGVRVDSLLYPGYAVPPFYDSLLAKLIVHDESRAAAL  403 (458)
T ss_pred             CCCCHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCHHHEEEEECCCHHHHH
T ss_conf             78642106667508999752258877867688385268639999888888702779748875504300368889999999


Q ss_pred             HHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHCCC
Q ss_conf             99998765408826377888999896898895588653168751069
Q gi|254780268|r  397 MRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKYLK  443 (443)
Q Consensus       397 ~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~~~  443 (443)
                      +||.+||+++.|.|++||++||++||+||+|++|+++|+|||++++|
T Consensus       404 ~rl~~aL~e~~I~Gv~TNi~~l~~il~~~~F~~g~~~T~fle~~~~e  450 (458)
T PRK12833        404 ARAARALEELRIDGMKTTAPLHRALLADADVRAGRYHTNFLEAWMAE  450 (458)
T ss_pred             HHHHHHHHCCEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99999984479989338799999986790011799760788866686


No 14 
>KOG0238 consensus
Probab=100.00  E-value=0  Score=1167.79  Aligned_cols=439  Identities=51%  Similarity=0.888  Sum_probs=431.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCH
Q ss_conf             86644709999999988880965999858557718776758579991899853000698999999987099899458531
Q gi|254780268|r    5 ILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGF   84 (443)
Q Consensus         5 iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGf   84 (443)
                      ||||||||||||+|||||+|||+||+|||++|++|+|+.+|||+|||++++...|||+.+.||++|++++++||||||||
T Consensus         1 iLiANRGEIAcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGF   80 (670)
T KOG0238           1 ILIANRGEIACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGF   80 (670)
T ss_pred             CEECCCCCEEEHHHHHHHHHCCEEEEEECCCCCCCCEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCC
T ss_conf             92224660651156679972975899971576343200004510342887344434137899999986288462178553


Q ss_pred             HHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC--CCHHHHHHHHHCCCCHHHHHCCCCCC
Q ss_conf             3109766688984592162689899987218998877664224433243334--55799987320033012200023457
Q gi|254780268|r   85 LSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE--VYPHTAMPIAKEIGFPVLVKASAGGG  162 (443)
Q Consensus        85 LsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~--~~~~ea~~~a~~iGyPviiKp~~gGG  162 (443)
                      ||||++||+.|+++|++||||++++|+.||||..+|++|+++|||++||+..  .+.+++...+++|||||||||++|||
T Consensus        81 LSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGG  160 (670)
T KOG0238          81 LSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGG  160 (670)
T ss_pred             CCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             23553899999876986879887998873125778999986499613685643266799999998619857999515788


Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             82168887506689999987543212589981688443420110331577734787023656654211356225540344
Q gi|254780268|r  163 GRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHS  242 (443)
Q Consensus       163 G~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEeaPa  242 (443)
                      |||||++++++|+.+.|+.+++||.++|||+.+|+||||++||||||||+||++||++||+|||||+||||||+||||||
T Consensus       161 GkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSvQRRnQKiiEEaPa  240 (670)
T KOG0238         161 GKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSVQRRNQKIIEEAPA  240 (670)
T ss_pred             CCCEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf             76317514868899999988888876318641107776368754899997347776888504544242321156630899


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCC
Q ss_conf             55889999999999999886515434102458972-88349982276543320167886325620112322210222221
Q gi|254780268|r  243 PVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRLSVQ  321 (443)
Q Consensus       243 p~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l~~~  321 (443)
                      |+|++++|.+|.++|+++++++||.|+|||||++| .++||||||||||||||||||++||+|||+||||+|.|+||+++
T Consensus       241 p~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQVEHPvTEmItg~DLVewqiRvA~ge~lp~~  320 (670)
T KOG0238         241 PNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQVEHPVTEMITGTDLVEWQIRVAAGEPLPLK  320 (670)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECEEEECCCCHHHCCCHHHHHHHHHHHCCCCCCCC
T ss_conf             99998999999999999988638764444999983788579998402253036416321222789999998649999977


Q ss_pred             CCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCC-CCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf             13333201245330245662-21111244215886689-98446777602387707776843389999559989999999
Q gi|254780268|r  322 QKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPG-GLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRL  399 (443)
Q Consensus       322 ~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~-~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l  399 (443)
                      |.+|+.+|||+||||||||| .+|+|++|+|..|.+|. +++||+|||+++|++||++|||||||||+||+||++|+.||
T Consensus       321 q~ei~l~GhafE~RiyAEdp~~~f~P~~G~L~~~~~p~~~~~vRvdtgV~~g~~vs~~YDpmiaKlvvwg~dR~~Al~kl  400 (670)
T KOG0238         321 QEEIPLNGHAFEARIYAEDPYKGFLPSAGRLVYYSFPGHSPGVRVDTGVRSGDEVSIHYDPMIAKLVVWGKDREEALNKL  400 (670)
T ss_pred             CCEEEECCEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCHHEEEEEECCCHHHHHHHH
T ss_conf             02013645478999850077546777874111202678899725555730287446113650015667648789999999


Q ss_pred             HHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHCCC
Q ss_conf             98765408826377888999896898895588653168751069
Q gi|254780268|r  400 NRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKYLK  443 (443)
Q Consensus       400 ~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~~~  443 (443)
                      ..||++++|.|++|||+||+.|+.+|+|..|+++|.||++|+.+
T Consensus       401 ~~aL~~~~I~Gv~tnI~~l~~i~~~~~F~~g~V~T~fi~~~~~e  444 (670)
T KOG0238         401 KDALDNYVIRGVPTNIDFLRDIISHPEFAKGNVSTKFIPEHQPE  444 (670)
T ss_pred             HHHHHHCEEECCCCCHHHHHHHHCCHHHHCCCCCCCCCHHCCCC
T ss_conf             99986068846756668999875476663276301534010744


No 15 
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00  E-value=0  Score=1113.05  Aligned_cols=440  Identities=50%  Similarity=0.845  Sum_probs=426.6

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCC-CCCHHCCHHHHHHHHHHCCCCEEE
Q ss_conf             9706866447099999999888809659998585577187767585799918998-530006989999999870998994
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPS-SKDSYLNIQQIVAACEVTGADAIH   79 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~-~~~sYldi~~ii~~a~~~~~daih   79 (443)
                      +|||||||||||||+|+.|||.|||++||+||+..|+.|.|...|||+|.+|.+. +.++|||||.||.+|+++|+||||
T Consensus         6 ~~~KvLVANRgEIAIRvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaIh   85 (1149)
T COG1038           6 KIKKVLVANRGEIAIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAIH   85 (1149)
T ss_pred             HHHEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHCCCCCEEECCCCCCCHHHHCCHHHHHHHHHHCCCCEEC
T ss_conf             10202550453366999998886086489985144543044303551066067887268743299999999970887313


Q ss_pred             CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC--CHHHHHHHHHCCCCHHHHHC
Q ss_conf             5853131097666889845921626898999872189988776642244332433345--57999873200330122000
Q gi|254780268|r   80 PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV--YPHTAMPIAKEIGFPVLVKA  157 (443)
Q Consensus        80 PGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~--~~~ea~~~a~~iGyPviiKp  157 (443)
                      |||||||||++||++|.++||+||||+++.++++|||.++|.++.++|||++|++..+  +.++++++++++|||+|||+
T Consensus        86 PGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmiKA  165 (1149)
T COG1038          86 PGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIKA  165 (1149)
T ss_pred             CCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             78432447989999999759789688879998844288899999975998556999982129999999986698589997


Q ss_pred             CCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             23457821688875066899999875432125899816884434201103315777347870236566542113562255
Q gi|254780268|r  158 SAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIW  237 (443)
Q Consensus       158 ~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkii  237 (443)
                      +.||||||||+|++++||.+++++|++||+++||++.|++||||++||||||||+||.+||++||+|||||+||||||+|
T Consensus       166 ~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRhQKVV  245 (1149)
T COG1038         166 AAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKVV  245 (1149)
T ss_pred             CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCEEEEEEEECCCCCEEEEEECCCCHHHCCCEEE
T ss_conf             14798665266258889999999988999974189806656552486526899860577878888623553310144037


Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             4034455889999999999999886515434102458972-883499822765433201678863256201123222102
Q gi|254780268|r  238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASEN  316 (443)
Q Consensus       238 EeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~  316 (443)
                      |.||||.|++++|++|+++|+|+++.+||.|+||||||+| +++|||||||||+||||+|||++||||+|+.||.||.|.
T Consensus       246 E~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~G~  325 (1149)
T COG1038         246 EVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQVEHTITEEITGIDIVKAQIHIAAGA  325 (1149)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEEEEEECHHHHHHHHHHHCCC
T ss_conf             85688889999999999999999997397656647888738886899995473456776455441216788789885356


Q ss_pred             CCC------CCCCCCCCCHHHHHHHCCCCCCC-CCCCCCCCEEEEECCCCCCEEEECC-CCCCCEECCCCCCCEEEEEEE
Q ss_conf             222------21133332012453302456622-1111244215886689984467776-023877077768433899995
Q gi|254780268|r  317 RLS------VQQKDITFSGHAIECRINAEDPE-NFIPNPGEITYFHAPGGLGIRMDSA-SYQGYTVPSYYDSLIAKLIVH  388 (443)
Q Consensus       317 ~l~------~~~~~i~~~g~aie~Ri~aEdp~-~f~Ps~G~i~~~~~p~~~gvRvDt~-~~~G~~i~~~yDsmlaKiI~~  388 (443)
                      .|.      .+|++|..+||||||||+.|||. ||+|.+|+|+.|+.++|.|||.|+| .+.|.+|+|||||||-|+.+|
T Consensus       326 ~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~n~F~PDtGrI~aYRs~gGfGVRLD~Gn~~~GavItpyyDslLVK~t~~  405 (1149)
T COG1038         326 TLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGFIPDTGRITAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTCW  405 (1149)
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCEECCCCCCCEEEEEEC
T ss_conf             56874459974444033643788774133745477888752788862787438745776656646314455414456324


Q ss_pred             CCCHHHHHHHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHH
Q ss_conf             5998999999998765408826377888999896898895588653168751
Q gi|254780268|r  389 GKNRKECMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENK  440 (443)
Q Consensus       389 g~~R~~Ai~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~  440 (443)
                      |.++++|++||.|+|.||+|+||+|||+||+++|+||.|++|+|+|+|||+.
T Consensus       406 ~~t~e~a~~km~RaL~EfrIrGVkTNi~FL~~vl~h~~F~~g~y~T~FId~t  457 (1149)
T COG1038         406 GSTFEEAIRKMIRALREFRIRGVKTNIPFLEAVLNHPDFRSGRYTTSFIDTT  457 (1149)
T ss_pred             CCCHHHHHHHHHHHHHHHEECCEECCCHHHHHHHCCCCCCCCCCEEEECCCC
T ss_conf             8998999999999888845112132818999985595302686323340589


No 16 
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00  E-value=0  Score=1007.10  Aligned_cols=442  Identities=63%  Similarity=1.058  Sum_probs=433.7

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf             97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP   80 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP   80 (443)
                      ||+|||||||||||+|++|||++||++||+|||++|..+.|+.+|||+++++|.+..+||||++.++.+|++.++|||||
T Consensus         1 m~~kiLIanrGeia~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~p   80 (449)
T COG0439           1 MFKKILIANRGEIAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHP   80 (449)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEECC
T ss_conf             97369995585368999999998498589996610022525663756798388650345651888998998608766723


Q ss_pred             CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC--CCHHHHHHHHHCCCCHHHHHCC
Q ss_conf             85313109766688984592162689899987218998877664224433243334--5579998732003301220002
Q gi|254780268|r   81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE--VYPHTAMPIAKEIGFPVLVKAS  158 (443)
Q Consensus        81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~--~~~~ea~~~a~~iGyPviiKp~  158 (443)
                      ||||||||+.|++.|+++|+.||||++++|+.||||+.+|++|+++|||++||+..  .+.+++.+.+++|||||||||+
T Consensus        81 Gygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~  160 (449)
T COG0439          81 GYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAA  160 (449)
T ss_pred             CCHHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             50342178899999997497510849899997445899999999749995899787768889999999871997899977


Q ss_pred             CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             34578216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r  159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE  238 (443)
Q Consensus       159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE  238 (443)
                      +||||+||++|++.+||.++|+.+++++..+|+++.|++||||+++||+|+||++|++||++|++|||||+||||||++|
T Consensus       161 ~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcsiqrr~qkvie  240 (449)
T COG0439         161 AGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVIE  240 (449)
T ss_pred             CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEE
T ss_conf             88996547997999999999999998888755897278634105884689999876866589998646687677661553


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf             034455889999999999999886515434102458972-8834998227654332016788632562011232221022
Q gi|254780268|r  239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENR  317 (443)
Q Consensus       239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~  317 (443)
                      ++|+|.++++.+.++...+.++++.+||.|+||+|||++ +++|||+||||||||||||||++||+|||++||++|+|++
T Consensus       241 eapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~~~yfiEmN~Rlqveh~vte~vtGiDlv~~qi~ia~ge~  320 (449)
T COG0439         241 EAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIEMNTRLQVEHPVTEMVTGIDLVKEQIRIAAGEP  320 (449)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHCCCC
T ss_conf             05888899999999999999999863877775699998279987999986411367630100000428999999976998


Q ss_pred             CCCCCCCCCCCHHHHHHHCCCCCCC-CCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHH
Q ss_conf             2221133332012453302456622-111124421588668998446777602387707776843389999559989999
Q gi|254780268|r  318 LSVQQKDITFSGHAIECRINAEDPE-NFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECM  396 (443)
Q Consensus       318 l~~~~~~i~~~g~aie~Ri~aEdp~-~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai  396 (443)
                      +++.|+++.++|||+|||||+|||. ||.||+|+++.+.+|+++|||+|++.+.|+.+|++||||++|+|+||.+|.+|+
T Consensus       321 l~~~q~~~~~~g~aie~Ri~aedp~~~f~pspG~i~~~~~P~g~gvr~d~~~~~~~~i~~~yds~i~k~i~~~~~r~~ai  400 (449)
T COG0439         321 LSLKQEDIKFRGHAIECRINAEDPLGNFLPSPGKITRYAPPGGPGVRVDSGVYDGYRVPPYYDSMIGKVIVHGRTRDEAI  400 (449)
T ss_pred             CCCCCCCCCCCCEEEECEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCHHHHEEEEEEECCCHHHHH
T ss_conf             88777775613313100010568887857899765014079988668873213585248641401368999648869999


Q ss_pred             HHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHCC
Q ss_conf             9999876540882637788899989689889558865316875106
Q gi|254780268|r  397 MRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENKYL  442 (443)
Q Consensus       397 ~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~~~  442 (443)
                      .+|.+||+++.|.|++||++|++.+++++.|.+|+++|+||+++..
T Consensus       401 ~~~~~aL~e~~i~G~~t~~~~~~~~~~~~~~~~g~~~t~~l~~~~~  446 (449)
T COG0439         401 ARMRRALDELVIDGIKTNIPLLQEILRDPDFLAGDLDTHFLETHLE  446 (449)
T ss_pred             HHHHHHHHHEEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHCCC
T ss_conf             9999878762744865786999988619476538766366531022


No 17 
>KOG0369 consensus
Probab=100.00  E-value=0  Score=1018.27  Aligned_cols=439  Identities=47%  Similarity=0.783  Sum_probs=427.3

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCC-CHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf             70686644709999999988880965999858557718776758579991899853-00069899999998709989945
Q gi|254780268|r    2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSK-DSYLNIQQIVAACEVTGADAIHP   80 (443)
Q Consensus         2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~-~sYldi~~ii~~a~~~~~daihP   80 (443)
                      .+|||||||||||+|+.|+|.||+++||+|||+.|+.++|...|||+|.+|.+.++ ..||.|+.||++|+++++|+|||
T Consensus        33 ~~kvlVANRgEIaIRvFRa~tEL~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHP  112 (1176)
T KOG0369          33 KNKVLVANRGEIAIRVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHP  112 (1176)
T ss_pred             HCEEEEECCCCCHHHHHHHHHHHCCEEEEEEECCCHHHHHHHCCCHHEECCCCCCCHHHHHCHHHHHHHHHHCCCCEECC
T ss_conf             03478852762004788777762544799973111124656304301232677782676514799999998728873257


Q ss_pred             CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC--CHHHHHHHHHCCCCHHHHHCC
Q ss_conf             853131097666889845921626898999872189988776642244332433345--579998732003301220002
Q gi|254780268|r   81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV--YPHTAMPIAKEIGFPVLVKAS  158 (443)
Q Consensus        81 GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~--~~~ea~~~a~~iGyPviiKp~  158 (443)
                      ||||||||++||++|.++|+.||||||++|+.||||..+|.++.++|||++||+..+  +.+|+.+|+++.|||+++|++
T Consensus       113 GYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAA  192 (1176)
T KOG0369         113 GYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAA  192 (1176)
T ss_pred             CCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             74212212489999986596696889799988420888889999719971589999754299999999861983899610


Q ss_pred             CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             34578216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r  159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE  238 (443)
Q Consensus       159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE  238 (443)
                      +||||||||+|++.+|++++|++|.+||+++|||+.+|||||++.|||||||+++|.+||++||+|||||+||||||++|
T Consensus       193 yGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDCSvQRRHQKVVE  272 (1176)
T KOG0369         193 YGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSVQRRHQKVVE  272 (1176)
T ss_pred             CCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCEEEEEEECCCCCCEEEEEECCCCHHHHHCCEEE
T ss_conf             16897643775025569999998889999861786153786625865268987213568789876145516432010367


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf             034455889999999999999886515434102458972-8834998227654332016788632562011232221022
Q gi|254780268|r  239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENR  317 (443)
Q Consensus       239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~  317 (443)
                      +|||+.|++++|++|.+.|+|+++.+||.++||+|||+| .|++||+||||||||||+|||++||||||+.||++|.|.+
T Consensus       273 iAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~vAeG~t  352 (1176)
T KOG0369         273 IAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIHVAEGAS  352 (1176)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEEEEECCCCHHHHHHHHHCCCC
T ss_conf             34556599899999999999999984756577078877167978999954643566552310045201011113431787


Q ss_pred             C---CCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECC-CCCCCEECCCCCCCEEEEEEECCCH
Q ss_conf             2---22113333201245330245662-21111244215886689984467776-0238770777684338999955998
Q gi|254780268|r  318 L---SVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSA-SYQGYTVPSYYDSLIAKLIVHGKNR  392 (443)
Q Consensus       318 l---~~~~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~-~~~G~~i~~~yDsmlaKiI~~g~~R  392 (443)
                      |   .+.|+.|..+|+|||||++.||| ++|.|.+|+|+.|+.-+|.|||.|++ .+.|..|||+||||+.|+|++|.+.
T Consensus       353 Lp~lgl~QdkI~trG~aIQCRvTTEDPa~~FqPdtGriEVfRSgeGmGiRLD~asafaGavIsPhYDSllVK~i~h~~~~  432 (1176)
T KOG0369         353 LPDLGLTQDKITTRGFAIQCRVTTEDPAKGFQPDTGRIEVFRSGEGMGIRLDGASAFAGAVISPHYDSLLVKVICHGSTY  432 (1176)
T ss_pred             CCCCCCCCCCEEECCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCC
T ss_conf             53235430203204337998872358554689987507999707874476247543566411655553278898538865


Q ss_pred             HHHHHHHHHHHHHCEECCCCCCHHHHHHHHCCHHHHCCCCCHHHHHHH
Q ss_conf             999999998765408826377888999896898895588653168751
Q gi|254780268|r  393 KECMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLENK  440 (443)
Q Consensus       393 ~~Ai~~l~~aL~~~~I~Gv~TN~~~l~~il~~~~f~~g~~~T~fi~~~  440 (443)
                      +.+.+||.|||.||+|+||+||||||.++|.+|.|++|.++|.|||++
T Consensus       433 ~~~a~KMiRaL~eFRiRGVKTNIpFllnvL~n~~Fl~g~~~T~FIDe~  480 (1176)
T KOG0369         433 EIAARKMIRALIEFRIRGVKTNIPFLLNVLTNPVFLEGTVDTTFIDET  480 (1176)
T ss_pred             HHHHHHHHHHHHHHHHCCEECCCHHHHHHHCCCHHEEEEEEEEEECCC
T ss_conf             678999999999872203202747999986474101001124772488


No 18 
>KOG0368 consensus
Probab=100.00  E-value=0  Score=817.04  Aligned_cols=439  Identities=34%  Similarity=0.587  Sum_probs=416.6

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHC---------CCEEEEECCCHH--HCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHH
Q ss_conf             970686644709999999988880---------965999858557--718776758579991899853000698999999
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKEL---------GIPTVAVHSTAD--SGAMHVRLADESVCIGPPSSKDSYLNIQQIVAA   69 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~el---------Gi~tv~v~s~~D--~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~   69 (443)
                      .|+||||||.|-.|++.+|+.|.+         -|+.|++.|++|  .+|.+.++||+.+..|++++...|.|+|.|+++
T Consensus        53 vI~kILIAnNGiAAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrmADqyvevPgGtNnNNyANVdlIvdi  132 (2196)
T KOG0368          53 VIKRILIANNGIAAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRMADQYVEVPGGTNNNNYANVDLIVDI  132 (2196)
T ss_pred             EEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHH
T ss_conf             36788870565889999999999999973876608999966878887668886310114337888887773018999988


Q ss_pred             HHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC-------------
Q ss_conf             9870998994585313109766688984592162689899987218998877664224433243334-------------
Q gi|254780268|r   70 CEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE-------------  136 (443)
Q Consensus        70 a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~-------------  136 (443)
                      |++..+||||+|||..|||+++.+.+.+.||.||||+.++|..+|||+.+--+|+.+||||+||++.             
T Consensus       133 Ae~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~~  212 (2196)
T KOG0368         133 AERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNL  212 (2196)
T ss_pred             HHHCCCCEEEECCCCCCCCCCHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCE
T ss_conf             87435535761555445684257889767928988946777763216877898875499721446886314455056762


Q ss_pred             -------------CCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf             -------------5579998732003301220002345782168887506689999987543212589981688443420
Q gi|254780268|r  137 -------------VYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLEN  203 (443)
Q Consensus       137 -------------~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~  203 (443)
                                   .+.+|.++.+++||||+||||+-||||||+|.|++.||+...|+++..|-    +.+++|+.|...+
T Consensus       213 v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~Ev----PGSPIFlMK~a~~  288 (2196)
T KOG0368         213 VSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNEV----PGSPIFLMKLADQ  288 (2196)
T ss_pred             EECCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHC----CCCCEEHHHHCCC
T ss_conf             735789865343088889999998629836999545789766130456678999999998558----9995552003367


Q ss_pred             EEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--CCCCE
Q ss_conf             1103315777347870236566542113562255403445588999999999999988651543410245897--28834
Q gi|254780268|r  204 PRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY--ENGQF  281 (443)
Q Consensus       204 ~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~--~~~~~  281 (443)
                      +||+|||+|+|.|||++.|+.|||||||||||||||||+.-.+.++.++|.++|+++++-+||.++||||||+  ++|+|
T Consensus       289 ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~~f  368 (2196)
T KOG0368         289 ARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDGEY  368 (2196)
T ss_pred             CCEEEEEHHHHHHCCEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEECCEEEEEEECCCCCE
T ss_conf             54021002245308787774366237787778876188541788999999999999987636111336899972589817


Q ss_pred             EEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCC---------------------CCCCCCCHHHHHHHCCCCC
Q ss_conf             9982276543320167886325620112322210222221---------------------1333320124533024566
Q gi|254780268|r  282 YFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRLSVQ---------------------QKDITFSGHAIECRINAED  340 (443)
Q Consensus       282 yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l~~~---------------------~~~i~~~g~aie~Ri~aEd  340 (443)
                      ||||.|||||||||.||++.||+|..+|+.||.|.||.-.                     +.-+.++||.|.|||++||
T Consensus       369 yFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~GdS~idfe~~~~p~pkgHciA~RITsEd  448 (2196)
T KOG0368         369 YFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTGDSPIDFENAKLPCPKGHCIAARITSED  448 (2196)
T ss_pred             EEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEECCC
T ss_conf             99962763024677525551578608999998598510054889970899999998771111378998418999863158


Q ss_pred             C-CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECC-CCCCHHHH
Q ss_conf             2-211112442158866899844677760238770777684338999955998999999998765408826-37788899
Q gi|254780268|r  341 P-ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDG-IKTTIPLF  418 (443)
Q Consensus       341 p-~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~G-v~TN~~~l  418 (443)
                      | ++|.||+|++..+.+++.++|+-..++..|..|..|.||.++++.+||.+|++|++.|.-||+++.|+| ++|+++||
T Consensus       449 PddgFkPSsG~v~eLnFrSssnvWgYFSV~~~g~iHeFadSQFGHiFa~Ge~R~eAi~nMv~aLKelsIRgdFrT~VeYL  528 (2196)
T KOG0368         449 PDDGFKPSSGTVQELNFRSSSNVWGYFSVGNGGGIHEFADSQFGHIFAFGESRQEAIANMVVALKELSIRGDFRTTVEYL  528 (2196)
T ss_pred             CCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCEECCCCCCCEEEEECCCHHHHHHHHHHHHHHCEECCCCCCHHHHH
T ss_conf             88775889870688414777771489994379850242433340146625768999999999887615146677628999


Q ss_pred             HHHHCCHHHHCCCCCHHHHHHHCCC
Q ss_conf             9896898895588653168751069
Q gi|254780268|r  419 QKLIKNEDIIEGNYDIHWLENKYLK  443 (443)
Q Consensus       419 ~~il~~~~f~~g~~~T~fi~~~~~~  443 (443)
                      +.+|.+.+|.++.++|.|||..+++
T Consensus       529 I~LLet~dF~~N~i~TgWLD~~Ia~  553 (2196)
T KOG0368         529 IDLLETEDFESNKIDTGWLDKRIAM  553 (2196)
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             9987765533146750468999998


No 19 
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275   Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC).   Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain.   Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains .    This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=100.00  E-value=0  Score=534.10  Aligned_cols=373  Identities=23%  Similarity=0.327  Sum_probs=341.6

Q ss_pred             CEEEEEECCCHHHH-----------HHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHH
Q ss_conf             70686644709999-----------9999888809659998585577187767585799918998530006989999999
Q gi|254780268|r    2 ISKILIANRGEIAL-----------RILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAAC   70 (443)
Q Consensus         2 ~~~iLianrGeia~-----------riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a   70 (443)
                      ||||||.+.|+|-+           ..++|+||.||+||+|||||.+.+++-.+||+.|.+|        |..+.|-+|.
T Consensus         6 i~kvLviGSGPi~IGQAaEFDYSGsQAcKALkEEGy~viLVNsNpATimTD~~~AD~vY~eP--------lT~e~V~~II   77 (1089)
T TIGR01369         6 IKKVLVIGSGPIVIGQAAEFDYSGSQACKALKEEGYEVILVNSNPATIMTDPEMADKVYIEP--------LTPEAVEKII   77 (1089)
T ss_pred             CCEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHCCCCCCCC--------CCHHHHHHHH
T ss_conf             87899966673113120230247899999987649579997588472338866866002525--------4588886665


Q ss_pred             HHCCCCEEEC---CCCHHHCCHHHH--HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf             8709989945---853131097666--88984592162689899987218998877664224433243334557999873
Q gi|254780268|r   71 EVTGADAIHP---GYGFLSENAKFA--EILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPI  145 (443)
Q Consensus        71 ~~~~~daihP---GyGfLsEn~~fa--~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~  145 (443)
                      ++..+|||.|   |++.|+..-+|-  ..|++.|+..||.+.++|...+||..||.+|.+.|+|||++..+.+.+||+++
T Consensus        78 EKERPDgiL~t~GGQTALNlav~L~~~GVL~kYgV~vLGT~~eaI~kaEDRe~F~~~M~ei~~pvp~S~~~~~~eEA~~~  157 (1089)
T TIGR01369        78 EKERPDGILPTLGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPKSEIVHSVEEALKA  157 (1089)
T ss_pred             HHCCCCCHHCCCCCHHHHHHHHHHHHCCCCHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf             31686600025760357777886620685145291785234243520202799999999738998811002788999999


Q ss_pred             HHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf             20033012200023457821688875066899999875432125899816884434201103315777347870236566
Q gi|254780268|r  146 AKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGER  225 (443)
Q Consensus       146 a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~er  225 (443)
                      |+++||||||+|++..||.|-.+|+|.+||.+..+.+.+.|.    =++|||||.|.||+|||..|+||.+|||+.+   
T Consensus       158 a~~~GyPviVRpAftLGG~GgGiA~n~eEL~~~~~~aL~~Sp----I~qvL~EkSl~GWKE~EYEVmRD~~dNCItV---  230 (1089)
T TIGR01369       158 AKEIGYPVIVRPAFTLGGTGGGIASNEEELKEIVERALSASP----INQVLVEKSLAGWKEIEYEVMRDSKDNCITV---  230 (1089)
T ss_pred             HHHCCCCEEECCCHHCCCCCCCEECCHHHHHHHHHHHHHHCC----CCEEEEEEECCCCEEEEEEEEEECCCCEEEE---
T ss_conf             962689689810032388998522577899999998863088----8557501100331788988986268788999---


Q ss_pred             CCCCCCCCCEEEE------ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CEEEEEEC--CCCEEEEECCCCCCCCCHH
Q ss_conf             5421135622554------0344558899999999999998865154341-02458972--8834998227654332016
Q gi|254780268|r  226 DCSVQRRNQKIWE------EAHSPVISAQDRTEIGETCVKAMKKIDYRGA-GTIEFLYE--NGQFYFIEMNTRLQVEHPV  296 (443)
Q Consensus       226 dCSiQrr~qkiiE------eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~-~tvEFl~~--~~~~yflEvN~Rlqveh~v  296 (443)
                       |++++-++..||      .|||++||+...|.|+++|+|+.|++|..|- +||||.+|  ++++|+||||||+||+.+.
T Consensus       231 -CNmEN~DPmGVHTGdSIVVAPSQTLtD~EYQ~LR~~sikIIR~lGi~GgGCNvQFAL~P~s~~Y~vIEvNPRvSRSSAL  309 (1089)
T TIGR01369       231 -CNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIVGGGCNVQFALDPDSGRYYVIEVNPRVSRSSAL  309 (1089)
T ss_pred             -ECCCCCCCCCEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCEEEEECCCCCCEEEEEECCCCCHHHHH
T ss_conf             -7454768984570783365076368807899999999999987391216742132150789706999867882135898


Q ss_pred             HHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCE--EEEECCCCCCEEEECCCCCCCEE
Q ss_conf             7886325620112322210222221133332012453302456622111124421--58866899844677760238770
Q gi|254780268|r  297 TEAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEI--TYFHAPGGLGIRMDSASYQGYTV  374 (443)
Q Consensus       297 te~~tgvdlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i--~~~~~p~~~gvRvDt~~~~G~~i  374 (443)
                      .+|+||+||.+.+.+||+|.+|+..+++|+-+.           |..|.||-.-|  +-.|||=+.--.+|..+.+    
T Consensus       310 ASKATGYPiAkvAAKLAvGY~LdEl~N~vT~~T-----------~A~FEPSLDYvVvKIPRW~f~KF~~v~r~LGt----  374 (1089)
T TIGR01369       310 ASKATGYPIAKVAAKLAVGYGLDELKNPVTKTT-----------PASFEPSLDYVVVKIPRWDFDKFEGVDRKLGT----  374 (1089)
T ss_pred             HHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCC-----------CCCCCCCCCEEEECCCCCCCHHHCCCCCCCCC----
T ss_conf             766516628999999846887876568888853-----------54104674808860678872210578854152----


Q ss_pred             CCCCCCC--EEEEEEECCCHHHHHHHHHHHHHHCEECCC
Q ss_conf             7776843--389999559989999999987654088263
Q gi|254780268|r  375 PSYYDSL--IAKLIVHGKNRKECMMRLNRALNEIIIDGI  411 (443)
Q Consensus       375 ~~~yDsm--laKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv  411 (443)
                           .|  +|.||+.|+|++||++|+.|.|+. ...|+
T Consensus       375 -----~MKSvGEVMAIGRtFEEALQKA~Rsle~-~~~Gf  407 (1089)
T TIGR01369       375 -----QMKSVGEVMAIGRTFEEALQKALRSLEI-GLLGF  407 (1089)
T ss_pred             -----EEEEEEEEECCCCCHHHHHHHHHHHHCC-CCCCC
T ss_conf             -----1015777734671389999898876537-84113


No 20 
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275   Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC).   Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain.   Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains .    This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=100.00  E-value=0  Score=450.68  Aligned_cols=370  Identities=23%  Similarity=0.340  Sum_probs=312.1

Q ss_pred             EEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHH
Q ss_conf             06866447099-----------9999998888096599985855771877675857999189985300069899999998
Q gi|254780268|r    3 SKILIANRGEI-----------ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACE   71 (443)
Q Consensus         3 ~~iLianrGei-----------a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~   71 (443)
                      |||||.+.|++           +|..++|+|++|++||+||+||++.|++...||.+|+-|        |-.|.++++.+
T Consensus       574 k~~lvlGSGp~RIGqgvEFDYc~Vh~~~aLr~~Gye~ImiN~NPETVSTDyD~sDrLYFEp--------lt~E~Vm~I~e  645 (1089)
T TIGR01369       574 KKVLVLGSGPNRIGQGVEFDYCCVHAVLALREAGYETIMINYNPETVSTDYDTSDRLYFEP--------LTFEDVMNIIE  645 (1089)
T ss_pred             CEEEEECCCCEECCCCEEEHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHCCCCC--------CCCCCCEEHEE
T ss_conf             5689987845140663120567899999998729959999778997436666510115876--------35031001100


Q ss_pred             HCCCCEE---ECCCCHHHCCHHHHHHHHHCC-CEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             7099899---458531310976668898459-216268989998721899887766422443324333455799987320
Q gi|254780268|r   72 VTGADAI---HPGYGFLSENAKFAEILEDHH-IKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAK  147 (443)
Q Consensus        72 ~~~~dai---hPGyGfLsEn~~fa~~~e~~G-i~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~  147 (443)
                      ..++++|   +.|+..+    .+|+.++++| ++.+|+|+++|+.++||.+|.++++++|||+|+|....+.+++.++|+
T Consensus       646 ~E~~~GVIVq~GGQtp~----nlA~~L~~~GG~~iLGTS~~~ID~AEDR~kFs~~l~~Lgi~QP~~~~a~s~eea~~~A~  721 (1089)
T TIGR01369       646 LEKPEGVIVQFGGQTPL----NLAKELEEAGGVPILGTSPESIDRAEDREKFSELLDELGIPQPEWKIATSVEEAKEFAS  721 (1089)
T ss_pred             ECCCCEEEEECCCHHHH----HHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHH
T ss_conf             05866799974873267----89999997089317368857875131867999999715879898852728799999985


Q ss_pred             CCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCC--------
Q ss_conf             033012200023457821688875066899999875432125899816884434201103315777347870--------
Q gi|254780268|r  148 EIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNA--------  219 (443)
Q Consensus       148 ~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~--------  219 (443)
                      +|||||+|+|||..||++|.||+|.+||...++.|..-|.    ..||+|.|||+++.|+||+.++||. ++        
T Consensus       722 ~iGYPvlvRPSYVLgG~aM~iv~~~eeL~~yl~~a~~~S~----~~PVlidky~e~A~E~dVD~v~Dg~-~v~i~gI~EH  796 (1089)
T TIGR01369       722 EIGYPVLVRPSYVLGGRAMEIVYNEEELARYLEEAVEVSP----EHPVLIDKYLEDAVEIDVDAVSDGE-EVLIPGIMEH  796 (1089)
T ss_pred             HCCCCEEECCCCCCCCCCHHEECCHHHHHHHHHHHHHHCC----CCCEEEEEECCCCEEEEEEEEEECC-EEEEEEHHHH
T ss_conf             4699289816830033621002678899999999997208----9976988852888899998997288-4899623123


Q ss_pred             -----CCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-CCEEEEECCCCCCCC
Q ss_conf             -----23656654211356225540344558899999999999998865154341024589728-834998227654332
Q gi|254780268|r  220 -----IHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYEN-GQFYFIEMNTRLQVE  293 (443)
Q Consensus       220 -----v~l~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~-~~~yflEvN~Rlqve  293 (443)
                           ||-|+--|++           |++.|+++..++|.+++.+++++|+++|+.||||++++ |++|+||+|||.||+
T Consensus       797 iE~AGVHSGDs~~~~-----------Pp~~L~~~~~~~i~~~~~~iA~~L~v~Gl~NiQf~~~~E~~~yVIE~NpRASRt  865 (1089)
T TIGR01369       797 IEEAGVHSGDSTCVL-----------PPQTLSEDIVKRIKDIVRKIAKELNVKGLFNIQFVVKDEGEVYVIEVNPRASRT  865 (1089)
T ss_pred             HHHCCCCCCCHHHCC-----------CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEECCCCCCC
T ss_conf             421367613053117-----------697778899999999999999870660722245556169967999971742066


Q ss_pred             CHHHHHHHCCCCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEECC
Q ss_conf             016788632562011232221022222113------33320124533024566221111244215886689984467776
Q gi|254780268|r  294 HPVTEAITGIDLVHEQIYVASENRLSVQQK------DITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGLGIRMDSA  367 (443)
Q Consensus       294 h~vte~~tgvdlv~~~~~~a~g~~l~~~~~------~i~~~g~aie~Ri~aEdp~~f~Ps~G~i~~~~~p~~~gvRvDt~  367 (443)
                      .|+.+|+|||||++.++++.+|.+|.....      +..++.+++                 |...|.|-.-+|+=+-=|
T Consensus       866 VPFvSKa~Gipl~~~A~~~~~G~~l~~~~~~~gv~~~~~~~~vav-----------------K~~vFSF~kL~g~Dp~LG  928 (1089)
T TIGR01369       866 VPFVSKATGIPLAKLAVRVMLGKKLEELGKDLGVGKEKESKYVAV-----------------KVPVFSFSKLAGVDPVLG  928 (1089)
T ss_pred             CCCEEEECCCCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCEEEE-----------------EEEECCCHHHCCCCEEEC
T ss_conf             541321037887999999970882010275401123268872799-----------------642377122148871117


Q ss_pred             CCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCE--------ECCCCCCHHHHHHHHCCHHHHC
Q ss_conf             0238770777684338999955998999999998765408--------8263778889998968988955
Q gi|254780268|r  368 SYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEII--------IDGIKTTIPLFQKLIKNEDIIE  429 (443)
Q Consensus       368 ~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~--------I~Gv~TN~~~l~~il~~~~f~~  429 (443)
                      .+    ..+     -|.+++.|.|+.+|+.|...+=. +.        +.+-..+.+-+..+.+  .|.+
T Consensus       929 pE----MkS-----TGEvmg~g~d~~~A~~Ka~~~~~-~~~p~kg~~~~~~~d~dk~~~~~~a~--~L~~  986 (1089)
T TIGR01369       929 PE----MKS-----TGEVMGIGRDLEEAFLKAMLSSG-NRIPKKGSVLLSVRDKDKEELLDLAK--KLAE  986 (1089)
T ss_pred             CC----CCC-----CCEEEEECCCHHHHHHHHHHHCC-CCCCCCCEEEEEECCCCHHHHHHHHH--HHHH
T ss_conf             75----551-----32256412788999999999818-70578877999803443457999999--9986


No 21 
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00  E-value=0  Score=432.60  Aligned_cols=388  Identities=21%  Similarity=0.277  Sum_probs=326.8

Q ss_pred             CEEEEEECCCHHH-----------HHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHH
Q ss_conf             7068664470999-----------99999888809659998585577187767585799918998530006989999999
Q gi|254780268|r    2 ISKILIANRGEIA-----------LRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAAC   70 (443)
Q Consensus         2 ~~~iLianrGeia-----------~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a   70 (443)
                      ||||||.+.|+|-           ..+++++||.||++|+||+||.+.+++..+||..|..|        |..+.+.++.
T Consensus         7 ikkvLiiGsGpi~IGqa~EfDysg~qA~~aLkeeG~~vvlvN~NPaTi~TD~~~ad~vY~eP--------lt~e~v~~Ii   78 (1068)
T PRK12815          7 IKKILVIGSGPIIIGQAAEFDYSGTQACKALKEEGYQVVLVNPNPATIMTDPEPADTVYFEP--------LTLEFVKRII   78 (1068)
T ss_pred             CCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCEEEECC--------CCHHHHHHHH
T ss_conf             88899989881531234465656999999999869989998898326208987444378858--------9899999999


Q ss_pred             HHCCCCEEECCCC---HHHCCHHHHH--HHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf             8709989945853---1310976668--8984592162689899987218998877664224433243334557999873
Q gi|254780268|r   71 EVTGADAIHPGYG---FLSENAKFAE--ILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPI  145 (443)
Q Consensus        71 ~~~~~daihPGyG---fLsEn~~fa~--~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~  145 (443)
                      ++.++|||.|.+|   .|+-..++.+  .+++.|+..+|.++++|+..+|+..|+++|.+.|+|++++..+.+.+++.++
T Consensus        79 ~~E~Pd~il~~~GGqtaLnla~~L~~~GiL~k~~v~llGt~~~~I~~aedR~~f~~~m~~ig~~~~~s~~~~s~~ea~~~  158 (1068)
T PRK12815         79 RREKPDALLATLGGQTALNLAVKLLEAGILEQYGVELLGTNVEAIQKGEDRERFRALMKELGEPVPESEIVDSEEEALRF  158 (1068)
T ss_pred             HHHCCCEEEECCCCHHHHHHHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHH
T ss_conf             97499989867778479999999997597786596496799999986459999999999769999970521999999999


Q ss_pred             HHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf             20033012200023457821688875066899999875432125899816884434201103315777347870236566
Q gi|254780268|r  146 AKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGER  225 (443)
Q Consensus       146 a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~er  225 (443)
                      ++++||||+|+|++..||+|+.+|+|++||.+.++.+...+.    .++|+||++|.||+|+|+.|++|+.||++.+   
T Consensus       159 a~~ig~PvivRps~~lGg~g~~i~~n~~eL~~~~~~~~~~S~----~~~vlie~sl~gwkEie~ev~RD~~~n~i~v---  231 (1068)
T PRK12815        159 AEKIGFPIIVRPAYTLGGDGGGIAENEEELEQLARQGLQASP----IHQCLLEESIAGWKEIEYEVMRDRNDNCVTV---  231 (1068)
T ss_pred             HHHCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHCC----CCCEEEEHHCCCCEEEEEEEEEECCCCEEEE---
T ss_conf             986699899983610668965044599999999999996399----9857865011797699999999889897998---


Q ss_pred             CCCCCCCCCEEEE------ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--CCCEEEEECCCCCCCCCHHH
Q ss_conf             5421135622554------034455889999999999999886515434102458972--88349982276543320167
Q gi|254780268|r  226 DCSVQRRNQKIWE------EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE--NGQFYFIEMNTRLQVEHPVT  297 (443)
Q Consensus       226 dCSiQrr~qkiiE------eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~--~~~~yflEvN~Rlqveh~vt  297 (443)
                       |++++-.+..|+      .+|+..|+++..++|+++|.++++++|..|.+||||.++  ++++|++|||||++|+.++.
T Consensus       232 -c~mEnidP~GIHTGDSi~vaP~qTL~d~e~q~lR~~a~~I~~~lgv~G~~NiQFAv~p~~~~~~VIEvNPR~SRssala  310 (1068)
T PRK12815        232 -CNMENIDPVGVHTGDSIVVAPSQTLTDDEYQMLRSASLKIIRALGVVGGCNIQFALDPRSKQYYVIEVNPRVSRSSALA  310 (1068)
T ss_pred             -EECCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCEECCEEEEEEECCCCCCEEEEECCCCCCCHHHHH
T ss_conf             -5412354454356774534578126999999999999999997280101057998869998289996478622024788


Q ss_pred             HHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC--EEEEECCCCCCEEEECCCCCCCEEC
Q ss_conf             88632562011232221022222113333201245330245662211112442--1588668998446777602387707
Q gi|254780268|r  298 EAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGE--ITYFHAPGGLGIRMDSASYQGYTVP  375 (443)
Q Consensus       298 e~~tgvdlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~--i~~~~~p~~~gvRvDt~~~~G~~i~  375 (443)
                      +++||+|+.+.+.++|.|.+|+...+++.-.           .+..|.|+...  ++..+||=..--..|....      
T Consensus       311 SKATGyPiAkvaaklalG~~L~ei~n~iTg~-----------t~A~fEP~lDyvvvK~P~~~F~kf~~~d~~Lg------  373 (1068)
T PRK12815        311 SKATGYPIAKIAAKLAVGYTLDEIKNPLTGL-----------TYASFEPTLDYVVVKFPRWPFDKFGYADRTLG------  373 (1068)
T ss_pred             HHHCCCCHHHHHHHHHCCCCHHHCCCCCCCC-----------CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC------
T ss_conf             8750884899999986388777706641377-----------30333775776999740566444678875447------


Q ss_pred             CCCCCC--EEEEEEECCCHHHHHHHHHHHHHHCEECCCC-------CCHHHHHHHHCCHH
Q ss_conf             776843--3899995599899999999876540882637-------78889998968988
Q gi|254780268|r  376 SYYDSL--IAKLIVHGKNRKECMMRLNRALNEIIIDGIK-------TTIPLFQKLIKNED  426 (443)
Q Consensus       376 ~~yDsm--laKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv~-------TN~~~l~~il~~~~  426 (443)
                      +   .|  .+.+|..|+++++|++|+.|+|+ ....|+.       .+.+-|...|.+|.
T Consensus       374 t---~Mks~Gevm~igr~f~eA~~KAlrsle-~~~~g~~~~~~~~~~~~~~l~~~L~~p~  429 (1068)
T PRK12815        374 T---QMKATGEVMAIGRNFESAFQKALRSLE-IKRNGLSLPELESGKSEEELLQDLRTPD  429 (1068)
T ss_pred             C---CCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             5---123332220030028999999998633-5767767765455678999999855899


No 22 
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00  E-value=0  Score=432.36  Aligned_cols=390  Identities=23%  Similarity=0.336  Sum_probs=326.9

Q ss_pred             CEEEEEECCCHHH-----------HHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHH
Q ss_conf             7068664470999-----------99999888809659998585577187767585799918998530006989999999
Q gi|254780268|r    2 ISKILIANRGEIA-----------LRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAAC   70 (443)
Q Consensus         2 ~~~iLianrGeia-----------~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a   70 (443)
                      +|||||.+.|+|-           ..+++++||.||++|+||+||.+.+++...||+.|..|        |+.+.+.++.
T Consensus         7 ikkvLviGsGp~~IGqa~EfDysg~qa~~al~e~g~~vilvN~NpaTv~Td~~~ad~vY~eP--------lt~e~v~~Ii   78 (1063)
T PRK05294          7 IKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEP--------ITPEFVEKII   78 (1063)
T ss_pred             CCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCCCCEEEECC--------CCHHHHHHHH
T ss_conf             78899989882510372332656999999999869989998798544107877664378727--------9899999999


Q ss_pred             HHCCCCEEECCCC---HHHCCHHHHH--HHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf             8709989945853---1310976668--8984592162689899987218998877664224433243334557999873
Q gi|254780268|r   71 EVTGADAIHPGYG---FLSENAKFAE--ILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPI  145 (443)
Q Consensus        71 ~~~~~daihPGyG---fLsEn~~fa~--~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~  145 (443)
                      ++.++|+|.|++|   .|+-..++.+  .+++.|++.+|.+.++|+.+.|+..|++++.+.|+|++++....+.+|+.++
T Consensus        79 ~~E~Pd~il~~~GGQtaLnla~~L~~~GiL~~~~v~lLGt~~~~I~~aedR~~F~~~l~~i~~p~~~s~~~~s~~ea~~~  158 (1063)
T PRK05294         79 EKERPDAILPTMGGQTALNLALELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHTMEEALEV  158 (1063)
T ss_pred             HHHCCCEEEECCCCHHHHHHHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHH
T ss_conf             97599978866778059999999997596776497275699999997778999999999769999972530999999999


Q ss_pred             HHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf             20033012200023457821688875066899999875432125899816884434201103315777347870236566
Q gi|254780268|r  146 AKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGER  225 (443)
Q Consensus       146 a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~er  225 (443)
                      ++++||||+|+|++..||+|+.+|++++||.+.++.+...+    +.++|+||+++.||+|||+.|++|+.||++.+   
T Consensus       159 a~~igyPvivRps~~LGG~g~~i~~n~~eL~~~~~~~~~~S----~~~qvLie~sl~gwkEie~ev~rD~~~n~i~v---  231 (1063)
T PRK05294        159 AEEIGYPVIIRPSFTLGGTGGGIAYNREELEEIVERGLDLS----PTTEVLIEESLLGWKEYEMEVMRDKADNCIIV---  231 (1063)
T ss_pred             HHHCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHC----CCCCEEEEHHCCCCEEEEEEEEEECCCCEEEE---
T ss_conf             98659988998442167876404349999999999999619----99868966111798899999998189998999---


Q ss_pred             CCCCCCCCCEEEE------ECCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEC--CCCEEEEECCCCCCCCCHH
Q ss_conf             5421135622554------03445588999999999999988651543-4102458972--8834998227654332016
Q gi|254780268|r  226 DCSVQRRNQKIWE------EAHSPVISAQDRTEIGETCVKAMKKIDYR-GAGTIEFLYE--NGQFYFIEMNTRLQVEHPV  296 (443)
Q Consensus       226 dCSiQrr~qkiiE------eaPap~l~~~~~~~i~~~A~~~~~~~g~~-g~~tvEFl~~--~~~~yflEvN~Rlqveh~v  296 (443)
                       |++++-.+-.|+      .+|+..|+++..++|+++|.++++++|.. |.+||||.++  ++++|++|||||++|+.++
T Consensus       232 -~~mEnidp~GIHtGDSi~vaP~qTL~d~e~q~lR~~a~kI~~~L~iv~G~~NiQfA~~p~~~~~~VIEvNPR~SRssal  310 (1063)
T PRK05294        232 -CSIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAILREIGVETGGSNVQFAVNPKDGRYVVIEMNPRVSRSSAL  310 (1063)
T ss_pred             -EEECCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCHHH
T ss_conf             -5411354564566672535688658989999999999999998295736447999874899848999637750010688


Q ss_pred             HHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCE--EEEECCCCCCEEEECCCCCCCEE
Q ss_conf             7886325620112322210222221133332012453302456622111124421--58866899844677760238770
Q gi|254780268|r  297 TEAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEI--TYFHAPGGLGIRMDSASYQGYTV  374 (443)
Q Consensus       297 te~~tgvdlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i--~~~~~p~~~gvRvDt~~~~G~~i  374 (443)
                      .+++||+||.+.+.++|+|.+|+...+++.-.           .+.-|.|+-..+  +..+||=..--..|...  |.+.
T Consensus       311 aSKaTGyPiA~vaaklalG~~L~ei~n~vT~~-----------t~A~fEP~ldyv~vK~p~~~f~kf~~~~~~L--g~~m  377 (1063)
T PRK05294        311 ASKATGYPIAKVAAKLAVGYTLDEIKNDITGK-----------TPASFEPSIDYVVTKIPRFAFEKFPGADRRL--TTQM  377 (1063)
T ss_pred             HHHHHCCCHHHHHHHHHHCCCHHHHCCCCCCC-----------CCCCCCCCCCEEEEEECCCCCCCCCCCCHHH--CCCC
T ss_conf             88873887899999987179757836764466-----------3144477566599970477710035854432--4301


Q ss_pred             CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECCCC----CCHHHHHHHHCCHH
Q ss_conf             77768433899995599899999999876540882637----78889998968988
Q gi|254780268|r  375 PSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIK----TTIPLFQKLIKNED  426 (443)
Q Consensus       375 ~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv~----TN~~~l~~il~~~~  426 (443)
                      ..     .+.+|..|+++++|++|+.|.|+ ....|+.    .+.+-|.+.|.+|.
T Consensus       378 ks-----~Gevm~igr~feea~~KAirSle-~~~~gl~~~~~~~~eel~~~L~~p~  427 (1063)
T PRK05294        378 KS-----VGEVMAIGRTFEESLQKALRSLE-IGLTGLDEKEDLALEEIRRELKKPT  427 (1063)
T ss_pred             CC-----CCHHHHHCCHHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             13-----41022222328999999998442-5866777777789999999863799


No 23 
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00  E-value=0  Score=400.52  Aligned_cols=298  Identities=24%  Similarity=0.345  Sum_probs=267.0

Q ss_pred             EEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHH
Q ss_conf             06866447099-----------9999998888096599985855771877675857999189985300069899999998
Q gi|254780268|r    3 SKILIANRGEI-----------ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACE   71 (443)
Q Consensus         3 ~~iLianrGei-----------a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~   71 (443)
                      +||||.+.|++           .+..++++|++||++|+||+||++.|++...+|..|+.|        |..|.++++++
T Consensus       554 ~kvlvlGsGp~rIGqgiEFDY~~v~a~~alk~~G~~~imIN~NPETVSTD~d~sDrLYFEp--------lt~E~V~~I~~  625 (1063)
T PRK05294        554 KKVMILGGGPNRIGQGIEFDYCCVHAALALREAGYETIMVNCNPETVSTDYDTSDRLYFEP--------LTLEDVLEIIE  625 (1063)
T ss_pred             CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEECC--------CCHHHHHHHHH
T ss_conf             6379965777320444230067999999999659815895378111115656676145436--------88999999999


Q ss_pred             HCCCCEEEC---CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             709989945---85313109766688984592162689899987218998877664224433243334557999873200
Q gi|254780268|r   72 VTGADAIHP---GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKE  148 (443)
Q Consensus        72 ~~~~daihP---GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~  148 (443)
                      ..++++|.+   |+..+    .+|..++++|++++|.++++|+.++||.+|++++.++|+++|||....+.+++++++++
T Consensus       626 ~E~p~gvi~qfGGQt~~----nla~~L~~~g~~ilGts~~~Id~aEDR~~F~~~l~~l~i~qp~~~~a~s~~ea~~~a~~  701 (1063)
T PRK05294        626 KEKPKGVIVQFGGQTPL----KLAKALEAAGVPILGTSPDAIDLAEDRERFQKLLEKLGIKQPPNGTATSVEEALEIAEE  701 (1063)
T ss_pred             HHCCCEEEEECCCCCHH----HHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHH
T ss_conf             75898799973883678----99999998799477788788787875888999998659999997076689999999986


Q ss_pred             CCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCC
Q ss_conf             33012200023457821688875066899999875432125899816884434201103315777347870236566542
Q gi|254780268|r  149 IGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCS  228 (443)
Q Consensus       149 iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCS  228 (443)
                      +||||+|+|++..||+||.+|++.+||.+.++.+...    .++.+|+|+|||++++|+||++++||.. ++.-+    -
T Consensus       702 iGyPvlvRPSyVLGG~~M~iv~~~~eL~~yl~~a~~v----s~~~pvlIdkfl~ga~E~eVDai~Dg~~-v~I~g----I  772 (1063)
T PRK05294        702 IGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKV----SPDHPVLIDRFLEDAIEVDVDAICDGED-VLIGG----I  772 (1063)
T ss_pred             CCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHH----CCCCCEEEEHHHHHCHHHHHHEEECCCE-EEEEE----E
T ss_conf             4986684343102577147856999999999999863----8999778635432024544302314884-89999----8


Q ss_pred             CCCCCCEEEE------ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHC
Q ss_conf             1135622554------0344558899999999999998865154341024589728834998227654332016788632
Q gi|254780268|r  229 VQRRNQKIWE------EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITG  302 (443)
Q Consensus       229 iQrr~qkiiE------eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tg  302 (443)
                      +|+-.+-.|+      ..|+..|++++.++|.+++.++++++++.|..|+||++.++++|+||+|||.||+.|+.+++||
T Consensus       773 mEHIE~AGVHSGDS~~V~Pp~~Ls~~~~~~i~~~t~~ia~~l~v~G~~NiQf~vk~~~vyVIE~NpRaSRtvPfvSKatg  852 (1063)
T PRK05294        773 MEHIEEAGVHSGDSACSLPPYTLSEEIIDEIREQTKKLALELNVVGLMNVQFAVKDDEVYVIEVNPRASRTVPFVSKATG  852 (1063)
T ss_pred             EEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCCHHHHHHCC
T ss_conf             72001457566784288168558999999999999999985566664203355409838999944744453044576419


Q ss_pred             CCCHHHHHHHHHCCCCCCC
Q ss_conf             5620112322210222221
Q gi|254780268|r  303 IDLVHEQIYVASENRLSVQ  321 (443)
Q Consensus       303 vdlv~~~~~~a~g~~l~~~  321 (443)
                      +||++.+.++++|.+|...
T Consensus       853 ~pl~~iAtk~~lG~~l~~l  871 (1063)
T PRK05294        853 VPLAKIAARVMLGKKLAEL  871 (1063)
T ss_pred             CCHHHHHHHHHCCCCHHHC
T ss_conf             9799999999829973442


No 24 
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00  E-value=0  Score=393.71  Aligned_cols=295  Identities=24%  Similarity=0.400  Sum_probs=264.2

Q ss_pred             EEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHH
Q ss_conf             06866447099-----------9999998888096599985855771877675857999189985300069899999998
Q gi|254780268|r    3 SKILIANRGEI-----------ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACE   71 (443)
Q Consensus         3 ~~iLianrGei-----------a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~   71 (443)
                      +||||.+.|++           .+..++++|++||+||+||+||++.|++...+|.+|+-|        |+.+.++++++
T Consensus       555 ~kvliLGsGP~RIGqgiEFDYc~vha~~aLr~~G~etImiN~NPETVSTDyD~sDrLYFEP--------lt~E~V~~I~~  626 (1068)
T PRK12815        555 KKVLILGSGPIRIGQGIEFDYMCVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEP--------ITLEDILNVAE  626 (1068)
T ss_pred             CEEEEECCCCCEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEECC--------CCHHHHHHHHH
T ss_conf             3499956787142244240025899999999689748996278431236745577357536--------87999999999


Q ss_pred             HCCCCEEEC---CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             709989945---85313109766688984592162689899987218998877664224433243334557999873200
Q gi|254780268|r   72 VTGADAIHP---GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKE  148 (443)
Q Consensus        72 ~~~~daihP---GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~  148 (443)
                      ..++++|..   |+..+    .+|..++++|++++|.++++|+.++||.+|++++.++|++.+||....+.+++++++++
T Consensus       627 ~E~p~gVivqfGGQt~l----nla~~L~~~gv~IlGts~~~Id~aEdR~~F~~ll~~l~i~~p~~~~~~~~~ea~~~a~~  702 (1068)
T PRK12815        627 AENIKGVIVQFGGQTAI----NLAKPLEEAGLPILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATSEEEALAFAKR  702 (1068)
T ss_pred             HHCCCEEEEECCCCCHH----HHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHH
T ss_conf             85899799964882367----99999997699498278688642413999999999738999996354566799999986


Q ss_pred             CCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCC
Q ss_conf             33012200023457821688875066899999875432125899816884434201103315777347870236566542
Q gi|254780268|r  149 IGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCS  228 (443)
Q Consensus       149 iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCS  228 (443)
                      +||||+|+|++..||+||.+|++.+||.+.++.+.+      .+.+|+|+|||++ +|+||++++|+...+++ |    .
T Consensus       703 iGyPvlvRPSyvLgG~~m~iv~~~~eL~~y~~~a~~------~~~pvlIdkfl~g-~E~evDai~Dg~~v~I~-g----I  770 (1068)
T PRK12815        703 IGYPVLIRPSYVIGGQGMAVVYDEPALEAYLEENVQ------QLYPILIDQFIDG-KEYEVDAISDGEDVTIP-G----I  770 (1068)
T ss_pred             CCCCEEECCCCCCCCCEEEEECCHHHHHHHHHHHCC------CCCCEEEEECCCC-CEEEEEEEECCCCEEEE-E----E
T ss_conf             499778424433577423897599999999985157------8885562300054-04688999649955999-9----6


Q ss_pred             CCCCCCEEEE------ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHC
Q ss_conf             1135622554------0344558899999999999998865154341024589728834998227654332016788632
Q gi|254780268|r  229 VQRRNQKIWE------EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITG  302 (443)
Q Consensus       229 iQrr~qkiiE------eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tg  302 (443)
                      +++-.|-.|+      ..|+..|+++..++|.+++.+++++++++|+.|+||++.++++|+||+|||.||+.|+.+++||
T Consensus       771 mEHIE~AGVHSGDS~~v~Pp~~Ls~~~~~~i~~~t~kia~~L~v~Gl~NiQfavk~~~vyVIEvNpRASRTvPFvSKatG  850 (1068)
T PRK12815        771 IEHIEQAGVHSGDSIAVLPPQSLSPEQQAKIRDQAIKIAKKLGFRGIMNIQFLLAGDEIYVLEVNPRASRTVPFVSKATG  850 (1068)
T ss_pred             EECHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCEEECCEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCC
T ss_conf             42113146656885488389878999999999999999964835451269999979989999961875543266787329


Q ss_pred             CCCHHHHHHHHHCCCCCCC
Q ss_conf             5620112322210222221
Q gi|254780268|r  303 IDLVHEQIYVASENRLSVQ  321 (443)
Q Consensus       303 vdlv~~~~~~a~g~~l~~~  321 (443)
                      +||++.+.++++|.+|...
T Consensus       851 ~pl~~iAtkvmlG~~L~~l  869 (1068)
T PRK12815        851 VPLAKLATKVLLGKSLAEL  869 (1068)
T ss_pred             CCHHHHHHHHHCCCCHHHC
T ss_conf             8899999999849975662


No 25 
>pfam02786 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.
Probab=100.00  E-value=0  Score=382.75  Aligned_cols=206  Identities=45%  Similarity=0.710  Sum_probs=199.2

Q ss_pred             CHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCC
Q ss_conf             899887766422443324333--455799987320033012200023457821688875066899999875432125899
Q gi|254780268|r  115 DKITAKKTAQQLGIPVVPGSG--EVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGN  192 (443)
Q Consensus       115 DK~~~k~~a~~~GVP~~p~~~--~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd  192 (443)
                      ||..+|++++++|||++||..  ..+.+++.++++++|||+||||++||||+||++|++.+||.++|+.+.+++...|++
T Consensus         1 Dk~~~k~~l~~~GvP~~~~~~~~~~s~ee~~~~a~~iG~PvvvKp~~~g~g~G~~~v~~~~eL~~a~~~a~~~a~~~~~~   80 (211)
T pfam02786         1 DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNEEELAELFALALAEAPAAFGN   80 (211)
T ss_pred             CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             98999999998698919987888799999999999859978997377789987512412778999999998751431699


Q ss_pred             CCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             81688443420110331577734787023656654211356225540344558899999999999998865154341024
Q gi|254780268|r  193 DAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTI  272 (443)
Q Consensus       193 ~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tv  272 (443)
                      ++|++|+||+|+||+|+++++|++|+++++++++|+.|++.++.++.+|+|.|+++++++|.++|.++++++||.|+++|
T Consensus        81 ~~vlvEe~i~g~~ei~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Pa~~l~~~~~e~i~~~a~~~~~~lg~~G~~~v  160 (211)
T pfam02786        81 PQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQRRTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTV  160 (211)
T ss_pred             CCEEEEECCCCCEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEECCCEE
T ss_conf             83899740477658999999827998999996332250335844468179999999999999999998752644233247


Q ss_pred             EEEEC--CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf             58972--8834998227654332016788632562011232221022222
Q gi|254780268|r  273 EFLYE--NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRLSV  320 (443)
Q Consensus       273 EFl~~--~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l~~  320 (443)
                      ||+++  ++++||||||||+|++|++|+++||+||++.|+++|+|+||+.
T Consensus       161 ef~~~~~~~~~~~iEvNpR~~~~~~~t~~~tg~~l~~~~~~~a~G~~l~e  210 (211)
T pfam02786       161 EFALDPFSGEYYFIEMNTRLQVSHALAEKATGYDLAKEAAKIALGYPLPE  210 (211)
T ss_pred             EEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf             89996799959999670896834778899879489999999977999786


No 26 
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00  E-value=0  Score=360.35  Aligned_cols=379  Identities=18%  Similarity=0.240  Sum_probs=292.7

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf             70686644709999999988880965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r    2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG   81 (443)
Q Consensus         2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG   81 (443)
                      .|||+|.|+|+.+...+++|++||+++++++  ++.+++..+.||+.++.       +|.|.+++.+.++++++|+|..-
T Consensus        12 ~kkIgIlGgGQLg~Mla~aA~~LG~~vivld--~~~d~PA~~vAd~~~~~-------~~~D~~al~~~a~~~~~DvvT~E   82 (395)
T PRK09288         12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVD--RYANAPAMQVAHRSHVI-------DMLDGDALRAVIEREKPDLIVPE   82 (395)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEC--CCCCCCHHHHCCEEEEC-------CCCCHHHHHHHHHHHCCCEEEEC
T ss_conf             8889998988999999999998799899984--89959446728657977-------87899999999998389989978


Q ss_pred             CCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf             531310976668898459216268989998721899887766-4224433243334557999873200330122000234
Q gi|254780268|r   82 YGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTA-QQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAG  160 (443)
Q Consensus        82 yGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a-~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~g  160 (443)
                      .  =+-+.+..+.+++.|+.++ |++++++.++||...|+++ +++|||++||....+.+++.++++++|||+|+||++|
T Consensus        83 ~--E~V~~~~L~~le~~G~~v~-Ps~~al~i~qdR~~~k~~~~~~lgIPt~~f~~v~s~~el~~~~~~lG~P~vlK~~~G  159 (395)
T PRK09288         83 I--EAIATDALVELEAEGFNVV-PTARATRLTMNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEEIGYPCVVKPVMS  159 (395)
T ss_pred             C--CCCCHHHHHHHHHCCCEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHCCCEEEECCCC
T ss_conf             5--4478899999986893367-999999998767899999997469999995470899999999998298758722415


Q ss_pred             CCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf             57821688875066899999875432125899816884434201103315777347870236566542113562255403
Q gi|254780268|r  161 GGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEA  240 (443)
Q Consensus       161 GGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEea  240 (443)
                      ++|||++++++.+|+.++|+.+...+..  +.+++++|+||+..+|+.|.+.++..|.+..++--+ .+|+++....-.+
T Consensus       160 ~DGKGq~~v~~~~dl~~a~~~a~~~~~~--~~~~~ivE~~v~f~~E~Svi~aR~~~g~~~~~~pve-~~~~~gil~~s~~  236 (395)
T PRK09288        160 SSGKGQSVVRSPEDIEAAWEYAQEGGRG--GAGRVIVEEFIDFDYEITLLTVRAVDGGTHFCAPIG-HRQEDGDYRESWQ  236 (395)
T ss_pred             CCCCCEEEECCHHHHHHHHHHHHHHCCC--CCCCEEEEEEECCCEEEEEEEEECCCCCEEEECCCC-CEEECCEEEEEEC
T ss_conf             7887528966878889999999850757--897089988853617999999996999889966854-2553342799715


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf             44558899999999999998865154341024589728834998227654332016788632562011232221022222
Q gi|254780268|r  241 HSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRLSV  320 (443)
Q Consensus       241 Pap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l~~  320 (443)
                      |++ +++++.++++++|.+++++++|+|+.+|||++.++++||+|+|||..-+.-+|-.....+--+.++|..+|.||+.
T Consensus       237 Pa~-i~~~v~~~a~~ia~~i~~~L~~vGvl~VEfFv~~d~llvNEiAPR~HNSGH~Ti~~~~~sQFe~hlRai~glPlg~  315 (395)
T PRK09288        237 PQP-MSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGDEVYFSEVSPRPHDTGMVTLISQNLSEFELHARAILGLPIPD  315 (395)
T ss_pred             CCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEECCCCCCCCEEEEHHCCCCHHHHHHHHHCCCCCCC
T ss_conf             778-9999999999999999997487144889999978908999920787786217621035419999999980998898


Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCCCC-CCCEEEEECCCCCCEEEECC--CCCCCEECCCCCCCEEEEEEECCCHHHHHH
Q ss_conf             113333201245330245662211112-44215886689984467776--023877077768433899995599899999
Q gi|254780268|r  321 QQKDITFSGHAIECRINAEDPENFIPN-PGEITYFHAPGGLGIRMDSA--SYQGYTVPSYYDSLIAKLIVHGKNRKECMM  397 (443)
Q Consensus       321 ~~~~i~~~g~aie~Ri~aEdp~~f~Ps-~G~i~~~~~p~~~gvRvDt~--~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~  397 (443)
                      .+.    ..-+.-+.+..++.. ..|. .|.=+....|+ -.+.+++-  ...|        -=++++.+.|+|.++|++
T Consensus       316 ~~~----~~p~a~~~~lg~~~~-~~~~~~~~~~~~~~p~-~~~h~YGK~~~r~g--------RKmGHvt~~g~~~~~a~~  381 (395)
T PRK09288        316 IRL----YGPAASAVILAEGES-ANPSFDGLAEALAVPG-TDVRLFGKPEIRGG--------RRMGVALATAEDVEEARE  381 (395)
T ss_pred             CCC----CCCCEEEEEECCCCC-CCCCHHHHHHHHCCCC-CEEEEECCCCCCCC--------CCEEEEEEEECCHHHHHH
T ss_conf             520----367379999526667-7866346999971999-87999289999899--------833899986099999999


Q ss_pred             HHHHHHHHCEECC
Q ss_conf             9998765408826
Q gi|254780268|r  398 RLNRALNEIIIDG  410 (443)
Q Consensus       398 ~l~~aL~~~~I~G  410 (443)
                      |+..|++..+|+|
T Consensus       382 ~a~~a~~~i~v~g  394 (395)
T PRK09288        382 KAKKAAAKVKVRG  394 (395)
T ss_pred             HHHHHHHHEEECC
T ss_conf             9999974458278


No 27 
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00  E-value=0  Score=355.41  Aligned_cols=361  Identities=25%  Similarity=0.341  Sum_probs=300.4

Q ss_pred             HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC---HHHCCHH
Q ss_conf             9999998888096599985855771877675857999189985300069899999998709989945853---1310976
Q gi|254780268|r   14 ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG---FLSENAK   90 (443)
Q Consensus        14 a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG---fLsEn~~   90 (443)
                      ...+++++|+.|+++|.|+++|.+.+++..+||+.|+.|        +..+.+..++++..+|||.|..|   .|+-..+
T Consensus        18 G~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP--------~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~   89 (400)
T COG0458          18 GTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEP--------ITKEPVEKIIEKERPDAILPTLGGQTALNAALE   89 (400)
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEEC--------CCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHH
T ss_conf             789999998669759997288721247800053026624--------737889999975376626324687413468899


Q ss_pred             HH--HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEE
Q ss_conf             66--8898459216268989998721899887766422443324333455799987320033012200023457821688
Q gi|254780268|r   91 FA--EILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRI  168 (443)
Q Consensus        91 fa--~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~v  168 (443)
                      +.  ..|++.|+..||.++++|+.+.||.+||+.++++|+|+| .....+.+++.++++++|||++|||+++.||.|..+
T Consensus        90 l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i  168 (400)
T COG0458          90 LKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIGYPVIVKPSFGLGGSGGGI  168 (400)
T ss_pred             HHHHCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCEEE
T ss_conf             8772645644977994587895564209999999998399988-412356777765576369977980685788875168


Q ss_pred             EEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE------ECCC
Q ss_conf             8750668999998754321258998168844342011033157773478702365665421135622554------0344
Q gi|254780268|r  169 AYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE------EAHS  242 (443)
Q Consensus       169 v~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE------eaPa  242 (443)
                      ++|++||.+..+...+.+    +..+|++|++|.|++|+|..|++|+++|++.+    |++.+-....++      .+||
T Consensus       169 ~~n~eel~~~~~~~l~~s----~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivv----c~men~dp~gvhtgdsi~vapa  240 (400)
T COG0458         169 AYNEEELEEIIEEGLRAS----PVEEVLIEESIIGWKEFEYEVVRDGKDNCIVV----CNMENLDPMGVHTGDSITVAPA  240 (400)
T ss_pred             EECHHHHHHHHHHCCCCC----CCCCCEEEEEECCCEEEEEEEEEECCCCEEEE----EECCCCCCCCCCCCCEEEECCC
T ss_conf             718999999987322447----64200124421685699999998379987999----8678656566444323652145


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf             558899999999999998865154341024589728--834998227654332016788632562011232221022222
Q gi|254780268|r  243 PVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYEN--GQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRLSV  320 (443)
Q Consensus       243 p~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~--~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l~~  320 (443)
                      +.+++...+.+++++.++.+++|..|-+||||.++.  +++||+|||||.++..++++++||.++.+...++|.|..|+.
T Consensus       241 qtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrssaLaskAtgypia~vaakla~g~~l~E  320 (400)
T COG0458         241 QTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSSALASKATGYPIAKVAAKLAVGYTLDE  320 (400)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCHH
T ss_conf             56543788998887777888741147873148986998559999956876764031554468769999997503567065


Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCE--EEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHH
Q ss_conf             1133332012453302456622111124421--58866899844677760238770777684338999955998999999
Q gi|254780268|r  321 QQKDITFSGHAIECRINAEDPENFIPNPGEI--TYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMR  398 (443)
Q Consensus       321 ~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i--~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~  398 (443)
                      .++++.-++++           .|.|+..-+  +-.+||-..-.+.|....      ....| .+.+++.|+++++|++|
T Consensus       321 i~n~it~~t~a-----------~fePsldyvv~k~pr~~f~kf~~~~~~l~------~~mks-~gevm~igr~f~eal~k  382 (400)
T COG0458         321 IRNDITGRTPA-----------SFEPSLDYVVTKIPRFDFEKFPGADRRLG------TQMKS-VGEVMAIGRTFEEALQK  382 (400)
T ss_pred             HCCCCCCCCCC-----------CCCCCCCEEEEECCCCCCCCCCCCCCCEE------EEEEC-CCEEEEECCHHHHHHHH
T ss_conf             44766444344-----------45776660366347787321345563310------02300-10289963129999999


Q ss_pred             HHHHHHHCEECC
Q ss_conf             998765408826
Q gi|254780268|r  399 LNRALNEIIIDG  410 (443)
Q Consensus       399 l~~aL~~~~I~G  410 (443)
                      +.|+|+ ....|
T Consensus       383 a~~~l~-~~~~~  393 (400)
T COG0458         383 ALRSLE-IGLAG  393 (400)
T ss_pred             HHHHHC-CCCCC
T ss_conf             998611-46651


No 28 
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=100.00  E-value=4e-42  Score=319.54  Aligned_cols=289  Identities=20%  Similarity=0.319  Sum_probs=243.3

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf             70686644709999999988880965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r    2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG   81 (443)
Q Consensus         2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG   81 (443)
                      |.+|||-+-|- .+-++|++|+.++.+.++.+|.|..++....||+.|.+|.. ..++|  ++.|+++|+++++|+|.||
T Consensus         1 m~nILvt~~G~-~~~ii~~lk~~~~~~~Vi~~D~~~~a~~~~~aD~~y~~P~~-~d~~y--~~~ll~i~~~~~id~iiP~   76 (325)
T PRK12767          1 MMNILVTSAGR-RVQLVKALKKSLLGGKVIGADISPLAPALYFADKFYVVPKV-TDPNY--IDALLDICKKENIDALIPL   76 (325)
T ss_pred             CCEEEEECCCC-HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCEEEECCCC-CCHHH--HHHHHHHHHHHCCCEEEEC
T ss_conf             94899986786-89999999976998599996899899534454889987888-98789--9999999998799999977


Q ss_pred             CC----HHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHHHCCCCHHHHH
Q ss_conf             53----131097666889845921626898999872189988776642244332433345579998-7320033012200
Q gi|254780268|r   82 YG----FLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAM-PIAKEIGFPVLVK  156 (443)
Q Consensus        82 yG----fLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~-~~a~~iGyPviiK  156 (443)
                      ..    ++|   ..+..+++.|+.+++|++++++.+.||..++++++++|+|+|+.....+.+++. ..++++|||+++|
T Consensus        77 ~d~El~~la---~~~~~l~~~gi~v~~~~~e~i~~~~DK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~fP~vvK  153 (325)
T PRK12767         77 IDPELPLLA---QHRDEFKEIGVKVLVSSKEVIEICNDKWLTYEFLKENGINTPKSYLPEDLEDLLKALAEELGFPLIVK  153 (325)
T ss_pred             CCHHHHHHH---HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             850266899---99999996799895697999998549999999999759998982055899999999986569966985


Q ss_pred             CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             02345782168887506689999987543212589981688443420110331577734787023656654211356225
Q gi|254780268|r  157 ASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKI  236 (443)
Q Consensus       157 p~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qki  236 (443)
                      |++|+||+|++++++.+||..++..          ..++++++||+| +|++|+++.|.+|++++.      ++|++.++
T Consensus       154 P~~g~gs~Gv~~i~~~~el~~~~~~----------~~~~ivqe~i~G-~E~tvdv~~d~~g~~~~~------~~~~r~~~  216 (325)
T PRK12767        154 PRDGSGSIGVFKVNNREELEFLLRY----------NPNLIIQEFIEG-QEYTVDVLCDLNGEVISI------VPRKRIEV  216 (325)
T ss_pred             ECCCCCCCCEEEECCHHHHHHHHHH----------CCCEEEEECCCC-CEEEEEEEEECCCCEEEE------EEEEECCC
T ss_conf             3567887754997999999999974----------897498703489-889999999789999999------99873364


Q ss_pred             E--EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHH
Q ss_conf             5--40344558899999999999998865154341024589728834998227654332016788632562011232221
Q gi|254780268|r  237 W--EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVAS  314 (443)
Q Consensus       237 i--EeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~  314 (443)
                      .  +..++....   ..++.+++.++++++|+.|..+|||++++|++||+|+|||.+-..|++ ...|+|++++.++..+
T Consensus       217 ~~G~~~~~~~~~---~~~l~~~~~~i~~~l~~~G~~~vq~~~~~g~~~iiEiNPRf~g~~~l~-~~aG~n~p~~~~~~~l  292 (325)
T PRK12767        217 RAGETSKGVTVK---NPELFKLAERIAEKLGARGPLNIQCFVVDGEPYLFEINPRFGGGYPLR-AMAGFNEPDILIRNLL  292 (325)
T ss_pred             CCCCCCCCEECC---HHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHH-HHHCCCHHHHHHHHHC
T ss_conf             457867753057---999999999999981985459999999899699999978878646739-8839899999999984


Q ss_pred             CCCC
Q ss_conf             0222
Q gi|254780268|r  315 ENRL  318 (443)
Q Consensus       315 g~~l  318 (443)
                      |+..
T Consensus       293 g~~~  296 (325)
T PRK12767        293 GGEN  296 (325)
T ss_pred             CCCC
T ss_conf             9998


No 29 
>KOG0370 consensus
Probab=100.00  E-value=3.1e-43  Score=327.48  Aligned_cols=380  Identities=19%  Similarity=0.279  Sum_probs=323.6

Q ss_pred             CEEEEEECCCHHH-----------HHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHH
Q ss_conf             7068664470999-----------99999888809659998585577187767585799918998530006989999999
Q gi|254780268|r    2 ISKILIANRGEIA-----------LRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAAC   70 (443)
Q Consensus         2 ~~~iLianrGeia-----------~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a   70 (443)
                      -+|+||.+.|-..           -..||++||.||.||.++.+..+..+...+||+.|+|+-        ..+.+-++.
T Consensus       377 ~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflpv--------T~~~vt~vi  448 (1435)
T KOG0370         377 VKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLPV--------TPEYVTKVI  448 (1435)
T ss_pred             CCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEEEC--------CHHHHHHHH
T ss_conf             517999815873321240355407889876553261799978960100025552128999505--------879999998


Q ss_pred             HHCCCCEEE---CCCCHHHCCHHHHH--HHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf             870998994---58531310976668--8984592162689899987218998877664224433243334557999873
Q gi|254780268|r   71 EVTGADAIH---PGYGFLSENAKFAE--ILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPI  145 (443)
Q Consensus        71 ~~~~~daih---PGyGfLsEn~~fa~--~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~  145 (443)
                      +...+|+|.   .|++.|+..-++-+  .+++.|++.+|.+.+.+-...|+..+-+.+.+.+.++.|+....+.++++++
T Consensus       449 ~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~a~~sie~al~a  528 (1435)
T KOG0370         449 KAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSEAVSTIEEALEA  528 (1435)
T ss_pred             HHHCCCEEEEECCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             86187737884277654456435300210000341543787552123142788999987631505625667679999988


Q ss_pred             HHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf             20033012200023457821688875066899999875432125899816884434201103315777347870236566
Q gi|254780268|r  146 AKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGER  225 (443)
Q Consensus       146 a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~er  225 (443)
                      ++++|||||+++++..||.|-..+.|++||.+....+...      ..+++|||.+.||+|+|..|++|.++||+.+   
T Consensus       529 ae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~------s~QilvekSlkGwkevEyevvrDa~~nciTv---  599 (1435)
T KOG0370         529 AERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALAL------SPQILVEKSLKGWKEVEYEVVRDAYDNCITV---  599 (1435)
T ss_pred             HHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC------CCEEEEHHHHCCCCCEEEEEEECCCCCHHHH---
T ss_conf             8862828999999985376643344489999997643125------8615422332443434899980200040533---


Q ss_pred             CCCCCCCCCEEEE------ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--CCCEEEEECCCCCCCCCHHH
Q ss_conf             5421135622554------034455889999999999999886515434102458972--88349982276543320167
Q gi|254780268|r  226 DCSVQRRNQKIWE------EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE--NGQFYFIEMNTRLQVEHPVT  297 (443)
Q Consensus       226 dCSiQrr~qkiiE------eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~--~~~~yflEvN~Rlqveh~vt  297 (443)
                       |.+++-++..|+      .||++.|+++..+.++..|+++.+++|..|-++|||.++  .-++|++|||.||++.....
T Consensus       600 -cnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGEcniQyaL~p~s~~y~IiEVNarLSrssaLA  678 (1435)
T KOG0370         600 -CNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNIQYALNPYSLEYRIIEVNARLSRSSALA  678 (1435)
T ss_pred             -CCCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHCCHHHEECCCCCCCCCCEEEECCCCEEEEEEEEEEEEEEHHHHH
T ss_conf             -5773457620101650799614225768899987502021102687665653044166630479999875774013443


Q ss_pred             HHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCE--EEEECCCCCCEEEECCCCCCCEEC
Q ss_conf             886325620112322210222221133332012453302456622111124421--588668998446777602387707
Q gi|254780268|r  298 EAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEI--TYFHAPGGLGIRMDSASYQGYTVP  375 (443)
Q Consensus       298 e~~tgvdlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i--~~~~~p~~~gvRvDt~~~~G~~i~  375 (443)
                      +++||.+|.-.+.++|+|.||+...+.+.-.  ..         .+|.||-.-+  +-.+|.-+.-.|+.+.+.+     
T Consensus       679 SkaTgypLAy~aAKlalg~~lpe~~n~Vt~~--T~---------AcFEpslDY~v~KiprWDl~kf~~vs~~igs-----  742 (1435)
T KOG0370         679 SKATGYPLAYTAAKLALGIPLPELKNSVTKT--TT---------ACFEPSLDYCVVKIPRWDLSKFQRVSTEIGS-----  742 (1435)
T ss_pred             CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC--EE---------CCCCCCHHHEEEECCCCCHHHHHHHHHHHCH-----
T ss_conf             2676675899999870486034677611252--00---------1457532013440565337878788876252-----


Q ss_pred             CCCCCC--EEEEEEECCCHHHHHHHHHHHHHHCEECCCCCCHHHHHHH
Q ss_conf             776843--3899995599899999999876540882637788899989
Q gi|254780268|r  376 SYYDSL--IAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLFQKL  421 (443)
Q Consensus       376 ~~yDsm--laKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv~TN~~~l~~i  421 (443)
                          ||  ++.+++.|+++++|++|+.|..+. .+.|+. ..+++..+
T Consensus       743 ----smKSvgEvm~iGR~feea~QKalr~vd~-~~~Gf~-~~~~~~~~  784 (1435)
T KOG0370         743 ----SMKSVGEVMAIGRTFEEAFQKALRMVDP-SLLGFM-STPFLDDL  784 (1435)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHCCCC-CCCCHHHH
T ss_conf             ----5652466662213079999887751492-323730-10214457


No 30 
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=100.00  E-value=1.3e-35  Score=273.26  Aligned_cols=362  Identities=20%  Similarity=0.293  Sum_probs=274.1

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf             70686644709999999988880965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r    2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG   81 (443)
Q Consensus         2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG   81 (443)
                      -++|.|.+-|+.+.-.+.+++.||++++++  +||.+++....||+.+.-       +|.|.+++.+.++.  ||.|-. 
T Consensus         7 ~~tIGIlGgGQLgrMla~aA~~lG~~v~vl--dp~~~~PA~~va~~~~~~-------~~~D~~al~~fa~~--~DviT~-   74 (377)
T PRK06019          7 GKTIGIIGGGQLGRMLALAAAPLGYKVIVL--DPDADCPAAQVADRVIVA-------DYDDVAALRELAEQ--CDVITY-   74 (377)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE--CCCCCCCHHHHCCEEEEC-------CCCCHHHHHHHHHC--CCEEEE-
T ss_conf             999999878689999999999789989998--489849847837848986-------88989999999845--999997-


Q ss_pred             CCHHHCC--HHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCC
Q ss_conf             5313109--76668898459216268989998721899887766422443324333455799987320033012200023
Q gi|254780268|r   82 YGFLSEN--AKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASA  159 (443)
Q Consensus        82 yGfLsEn--~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~  159 (443)
                         =.||  .+.-+.+++.+-  +-|++++++.++||...|+++.++|+||+||....+.+++.++.+++|||+|+|++.
T Consensus        75 ---E~EnI~~~~L~~le~~~~--v~P~~~al~i~QdR~~eK~~l~~lgiptapf~~v~s~~dl~~~~~~lg~P~vlKt~~  149 (377)
T PRK06019         75 ---EFENVPAEALDLLAARVP--VPPGPDALAIAQDRLTEKQFLDELGIPVAPFALVDSAEDLDAAIADLGLPAVLKTRR  149 (377)
T ss_pred             ---CCCCCCHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEECCC
T ss_conf             ---817689999999970896--687989999886279999999976999888067189999999999729976995133


Q ss_pred             CCC-CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             457-8216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r  160 GGG-GRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE  238 (443)
Q Consensus       160 gGG-G~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE  238 (443)
                      +|+ |||+.++++.+|+.++|...        ++.++++|+||+..+|+.|.+.++..|+++.++--+ .+|+++.-.--
T Consensus       150 ~GYDGKGq~~i~s~~dl~~a~~~l--------~~~~~i~E~~i~f~~ElSvivaR~~~G~~~~yP~~e-n~h~~gil~~s  220 (377)
T PRK06019        150 GGYDGKGQWVLRSEADLDAAWAAL--------GSGPCILEEFVPFEREVSVIVARGRDGEVVFYPLVE-NVHRNGILRTS  220 (377)
T ss_pred             CCCCCCCCEEECCHHHHHHHHHHC--------CCCCEEEEEEECCEEEEEEEEEECCCCCEEEECCHH-CEEECCEEEEE
T ss_conf             461887018977888999999865--------699889996543518999999984899999944411-47777755899


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf             03445588999999999999988651543410245897288349982276543320167886325620112322210222
Q gi|254780268|r  239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRL  318 (443)
Q Consensus       239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l  318 (443)
                      .+||+ +++++.++++++|.+++++++|+|+..|||+++++++||+|+.||..-+=-.|-...-..=-+.++|.-+|.||
T Consensus       221 ~~Pa~-~~~~~~~~a~~ia~~i~~~l~~vGvl~VE~F~~~~~llvNEiAPRpHNSGH~Ti~~~~~SQFe~HlRAi~glpl  299 (377)
T PRK06019        221 IAPAP-ISADLQAQAEEIASRIAEELDYVGVLAVEFFVTGDGLLVNEIAPRVHNSGHWTIDACSTSQFEQHLRAIAGLPL  299 (377)
T ss_pred             ECCCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             88999-99999999999999999974876249999999189389997258876875476423412489999999829988


Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCC----CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHH
Q ss_conf             22113333201245330245662----21111244215886689984467776023877077768433899995599899
Q gi|254780268|r  319 SVQQKDITFSGHAIECRINAEDP----ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKE  394 (443)
Q Consensus       319 ~~~~~~i~~~g~aie~Ri~aEdp----~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~  394 (443)
                      +....    ..-++-.-|-.++-    ...+-.++  ..+++.+-+.+|      .|-        =++++-+.|+|.++
T Consensus       300 ~~~~~----~~pa~M~NilG~~~~~~~~~~~~~~~--~~~h~YgK~e~r------~gR--------KmGHit~~~~~~~~  359 (377)
T PRK06019        300 GSTEL----LSPAVMVNLLGDDVEPDWDDLLALPG--AHLHWYGKAEAR------PGR--------KMGHVTVLGDDVEA  359 (377)
T ss_pred             CCCCC----CCCEEEEEEECCCCCHHHHHHHHCCC--CEEEECCCCCCC------CCC--------CEEEEEEECCCHHH
T ss_conf             88544----47669999837753136999971999--889976898788------998--------26899983199999


Q ss_pred             HHHHHHHHHHHCEECC
Q ss_conf             9999998765408826
Q gi|254780268|r  395 CMMRLNRALNEIIIDG  410 (443)
Q Consensus       395 Ai~~l~~aL~~~~I~G  410 (443)
                      +++++..+..-..+..
T Consensus       360 ~~~~~~~~~~~l~~~~  375 (377)
T PRK06019        360 LLEKAEALAALLPIEY  375 (377)
T ss_pred             HHHHHHHHHHHCCCCC
T ss_conf             9999999997658644


No 31 
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase; InterPro: IPR005905    D-alanine--D-alanine ligase (6.3.2.4 from EC) is a bacterial enzyme involved in cell-wall biosynthesis. It participates in forming UDP-N-acetylmuramoyl pentapeptide, the peptidoglycan precursor. These enzymes are proteins of 300 to 360 amino acids containing many conserved regions. The N-terminal Gly-rich region could be involved in ATP-binding.    This family of enzymes represent chromosomal versions of species not specifically resistant to glycopeptide antibiotics such as vancomycin. The mechanism of glycopeptide antibiotic resistance involves the production of D-alanine-D-lactate (VanA and VanB families) or D-alanine-D-serine (VanC). This model attempts to exclude the VanA/VanB and VanC subfamilies while capturing most other D-Ala-D-Ala ligases above the trusted cut-off. However, changes in small numbers of amino acids, as demonstrated crystallographically, can alter specificity. In chlamydial species, this enzyme is found as a fusion protein with UDP-N-acetylmuramate--alanine ligase. ; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005737 cytoplasm.
Probab=100.00  E-value=6.1e-36  Score=275.66  Aligned_cols=251  Identities=24%  Similarity=0.385  Sum_probs=195.7

Q ss_pred             HHHHHHHHHHC--------CCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC------------
Q ss_conf             99999988880--------9659998585577187767585799918998530006989999999870------------
Q gi|254780268|r   14 ALRILRACKEL--------GIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT------------   73 (443)
Q Consensus        14 a~riira~~el--------Gi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~------------   73 (443)
                      |..|.+++++.        |+..+.|+-+.  .-.++...-..+.          |++..+.+...+.            
T Consensus        20 a~~v~~aL~~~~~FIF~deg~~v~~~~~~~--~g~w~~~~~~~~~----------L~~~~~~~~~~~~~~~~~~~~~~~~   87 (375)
T TIGR01205        20 AQAVLKALRSLLEFIFLDEGYDVYPVDIDK--QGSWVFSDAKTEA----------LVYKDLLQKLLEQGGPINLSSLAQV   87 (375)
T ss_pred             HHHHHHHHHHCCCEEEEECCEEEEEEEECC--CCCEECCCCCCCC----------CCCCCHHHHHHHCCCCEECCCCCCC
T ss_conf             999999865208766531664899986226--7733003456555----------2111004677635897401466741


Q ss_pred             ------------------CCCE----EECC-CCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCC
Q ss_conf             ------------------9989----9458-5313109766688984592162689899987218998877664224433
Q gi|254780268|r   74 ------------------GADA----IHPG-YGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPV  130 (443)
Q Consensus        74 ------------------~~da----ihPG-yGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~  130 (443)
                                        .+|.    +|.. ||   |+.+.+..++-+||+|+||...+=....||..+|++++++|||+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~D~vF~~LHG~~~G---EDGtiQGlLe~~gIPY~Gsgv~aSA~smDK~~tK~~~~~~Glp~  164 (375)
T TIGR01205        88 SLLGESFLLEAESAEALEEIDVVFPVLHGPPYG---EDGTIQGLLELLGIPYTGSGVLASALSMDKLLTKLLLKSLGLPT  164 (375)
T ss_pred             CCCCCCCCCCCCCCHHHCCCCEEEEEECCCCCC---CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             003556666644530204798899812185668---55528999997078703747899998742899999998757974


Q ss_pred             CCCCCC--CCH---H--HHH--HHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEE-
Q ss_conf             243334--557---9--998--732003301220002345782168887506689999987543212589981688443-
Q gi|254780268|r  131 VPGSGE--VYP---H--TAM--PIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKY-  200 (443)
Q Consensus       131 ~p~~~~--~~~---~--ea~--~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~-  200 (443)
                      +||...  .+.   +  +..  ...+.+|||++|||+..|||.||.+|.+++||+.+++.|+++      |.+|+||+| 
T Consensus       165 ~~y~~l~~~~~~~~~~~~~~~~~~~~~lg~P~~VKPa~~GSSvG~~~V~~~~eL~~a~~~Af~~------d~~v~vE~~~  238 (375)
T TIGR01205       165 PDYAVLRRKERSSEDEAECENVAVLEKLGFPVFVKPAREGSSVGISKVKSEEELEAALDEAFKY------DERVIVEEFK  238 (375)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHCC------CCEEEEEECC
T ss_conf             4704675045445613468999999836897899734677757789846778999999986155------9659998111


Q ss_pred             --EEEEEECCEEEEEECCC-------CCCC------CCCCCCCC-CCC-CCEEEEECCCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf             --42011033157773478-------7023------65665421-135-62255403445-5889999999999999886
Q gi|254780268|r  201 --LENPRHIEVQIFGDGMG-------NAIH------FGERDCSV-QRR-NQKIWEEAHSP-VISAQDRTEIGETCVKAMK  262 (443)
Q Consensus       201 --i~~~rhiEvqVl~D~~g-------~~v~------l~erdCSi-Qrr-~qkiiEeaPap-~l~~~~~~~i~~~A~~~~~  262 (443)
                        |++ ||+||.||+++.+       +...      |+++|+-- .-+ +|.+|   ||+ .|+++..++|+++|.|+++
T Consensus       239 ~~i~g-rEl~v~~L~~~~~lp~~~~~~~~~~~g~~~FYDY~~KY~~~~g~~~~~---pa~~~L~~~~~~~i~~~a~~ay~  314 (375)
T TIGR01205       239 QRIKG-RELEVSILGNEEALPIISIVPEIEPDGGSDFYDYEAKYLDGDGTEYVI---PAPAGLDEELEEKIKELALKAYK  314 (375)
T ss_pred             CCCCC-CEEEEEEEECCCCCEEEECCCCCCCCCCCEECCHHHCCCCCCCCEEEE---CCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             47898-526898870797432454067535676760000211427788732651---56567888999999999999998


Q ss_pred             HHCCCCCCEEEEEEC-C-CCEEEEECCCC
Q ss_conf             515434102458972-8-83499822765
Q gi|254780268|r  263 KIDYRGAGTIEFLYE-N-GQFYFIEMNTR  289 (443)
Q Consensus       263 ~~g~~g~~tvEFl~~-~-~~~yflEvN~R  289 (443)
                      +++|+|+++|||+++ + |++|+|||||=
T Consensus       315 ~~~~~G~~R~DFf~~~~~G~~yLnEiNT~  343 (375)
T TIGR01205       315 ALGCRGLARVDFFLDKETGEIYLNEINTI  343 (375)
T ss_pred             HCCCCCEEEEEEEEECCCCEEEEEEECCC
T ss_conf             40887448998998728886999987688


No 32 
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00  E-value=2.3e-33  Score=257.36  Aligned_cols=362  Identities=20%  Similarity=0.229  Sum_probs=257.4

Q ss_pred             ECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC-CCCEEECCCCHHH
Q ss_conf             447099999999888809659998585577187767585799918998530006989999999870-9989945853131
Q gi|254780268|r    8 ANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT-GADAIHPGYGFLS   86 (443)
Q Consensus         8 anrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~-~~daihPGyGfLs   86 (443)
                      .|--=...+.+++++++|+++|.+-.+|.+...-.....+.+.+.      + -|.++|+..+.+. ++.+|.-    .|
T Consensus        10 sNTTGTG~l~lk~A~~lG~~pv~LT~dP~rY~~L~~~~~evI~vD------T-~d~dal~~~v~~~~~IaGV~s----~s   78 (892)
T PRK02186         10 SNTTGTGELLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISAD------T-SDPDRIHRFVSSLDGVAGIMS----SS   78 (892)
T ss_pred             ECCCCHHHHHHHHHHHCCCEEEEEECCHHHCHHHHHCCCEEEEEC------C-CCHHHHHHHHHCCCCCCEEEE----CC
T ss_conf             078772799999999749855898368343524675176599936------9-999999999742368526987----40


Q ss_pred             CC--HHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCC
Q ss_conf             09--7666889845921626898999872189988776642244332433345579998732003301220002345782
Q gi|254780268|r   87 EN--AKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGR  164 (443)
Q Consensus        87 En--~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~  164 (443)
                      |-  ..-++.++..|++  ||++++++.+.||..+|+.+.++|||++.+..+.+.+++..++++||||+||||+.+.||.
T Consensus        79 Dyyl~~AA~LA~~LGLP--Gp~peAV~~cRdK~~~Rq~L~~aGVp~P~~~lv~~~~e~~~aAa~IGfPvVVKP~dgSGS~  156 (892)
T PRK02186         79 EYFIEVASEVARRLGLP--AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALDAVALDALDGLTYPVVVKPRMGSGSV  156 (892)
T ss_pred             HHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf             54499999999981989--9899999998719999999996699999568835887899999847999897168888776


Q ss_pred             EEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCC-CCCCCCCCCCCCCCCCCEEEEE---C
Q ss_conf             16888750668999998754321258998168844342011033157773478-7023656654211356225540---3
Q gi|254780268|r  165 GMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMG-NAIHFGERDCSVQRRNQKIWEE---A  240 (443)
Q Consensus       165 Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g-~~v~l~erdCSiQrr~qkiiEe---a  240 (443)
                      |+++|++.+|+.++++...+.     ....+|||+|++|+ |+.|..+...-+ .++-+..++-   ...+.-||.   .
T Consensus       157 GVrLc~s~aEL~e~~~~l~~~-----r~~~vLVEEFieGp-EYSVEt~s~~G~~~VIGIT~K~l---~~~P~FVE~GH~f  227 (892)
T PRK02186        157 GVRLCASVAEAAAHCAALRRA-----GTRAALVQAYVEGD-EYSVETLTVARGHQVLGITRKHL---GPPPHFVEIGHDF  227 (892)
T ss_pred             CEEEECCHHHHHHHHHHHHHC-----CCCCEEEEECCCCC-EEEEEEEEECCCEEEEEEEEEEC---CCCCEEEEECCCC
T ss_conf             858768999999999999715-----48866999715688-78999999779679999986533---8997178706767


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEECCCCEEEEECCCCCCCCC-H-HHHHHHCCCCHHHHHHHHHCCC
Q ss_conf             445588999999999999988651543-410245897288349982276543320-1-6788632562011232221022
Q gi|254780268|r  241 HSPVISAQDRTEIGETCVKAMKKIDYR-GAGTIEFLYENGQFYFIEMNTRLQVEH-P-VTEAITGIDLVHEQIYVASENR  317 (443)
Q Consensus       241 Pap~l~~~~~~~i~~~A~~~~~~~g~~-g~~tvEFl~~~~~~yflEvN~Rlqveh-~-vte~~tgvdlv~~~~~~a~g~~  317 (443)
                      |+| |+++..++|.+++.+..+++||. |..++||.+.++.++++||||||-=-+ | ..|++|||||....|++-+|.+
T Consensus       228 PAp-L~~~~~~~I~d~v~raL~AlGl~~GpAHTEvklT~~GPvVIEINPRLAGGmIP~Lve~A~GvDll~~~~~~~~g~~  306 (892)
T PRK02186        228 PAP-LSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDTVVIIEINPRLAGGMIPVLLEEAFGVDLLDHVIDLHLGVA  306 (892)
T ss_pred             CCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf             899-9858999999999999997086668832899993897389997885446765899988718418999999863877


Q ss_pred             CCCCCCCCCCCHHH-HHHHCCCCCCCCCCCCCCCEEEEECC-----CCCCEEEECCC-CCCCEECCCCC--CCEEEEEEE
Q ss_conf             22211333320124-53302456622111124421588668-----99844677760-23877077768--433899995
Q gi|254780268|r  318 LSVQQKDITFSGHA-IECRINAEDPENFIPNPGEITYFHAP-----GGLGIRMDSAS-YQGYTVPSYYD--SLIAKLIVH  388 (443)
Q Consensus       318 l~~~~~~i~~~g~a-ie~Ri~aEdp~~f~Ps~G~i~~~~~p-----~~~gvRvDt~~-~~G~~i~~~yD--smlaKiI~~  388 (443)
                      -..   ++.+++|+ |.+++-+.        .|++....++     .++-+|-...+ .+|+.+.+..|  --+|-+|+.
T Consensus       307 ~~~---~~~~~~~~ai~f~~p~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gdf~dr~~~vi~~  375 (892)
T PRK02186        307 AFA---DPTAKRYGAIRFVLPAR--------SGVLRGPLALPADRAARPELRHFHPIKQPGDALRLEGDFRDRIAAVVCA  375 (892)
T ss_pred             CCC---CCCCCCCCEEEEEECCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf             778---97500123168984565--------5520466567410136753102466589986424477766543633103


Q ss_pred             CCCHHHH---HHHHHHHH
Q ss_conf             5998999---99999876
Q gi|254780268|r  389 GKNRKEC---MMRLNRAL  403 (443)
Q Consensus       389 g~~R~~A---i~~l~~aL  403 (443)
                      |.+++.+   ..++.+.|
T Consensus       376 ~~~~~~~~~~~~~~~~~l  393 (892)
T PRK02186        376 GDHRDSVAAAAERAVAGL  393 (892)
T ss_pred             CCCHHHHHHHHHHHHHHH
T ss_conf             788778998888776676


No 33 
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=100.00  E-value=8.5e-35  Score=267.51  Aligned_cols=246  Identities=23%  Similarity=0.362  Sum_probs=199.3

Q ss_pred             CCEEEEEECCCHH---------HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHH
Q ss_conf             9706866447099---------9999998888096599985855771877675857999189985300069899999998
Q gi|254780268|r    1 MISKILIANRGEI---------ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACE   71 (443)
Q Consensus         1 m~~~iLianrGei---------a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~   71 (443)
                      |.+||.|.-=|.-         |..+.+++++.|++++.+..+.|                             .+...+
T Consensus         3 ~~~kI~vl~GG~S~E~eVSl~S~~~v~~aL~~~~y~v~~id~~~~-----------------------------~~~~l~   53 (304)
T PRK01372          3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGED-----------------------------PAAELK   53 (304)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-----------------------------HHHHHH
T ss_conf             777189993678712899999999999988375997999828964-----------------------------677875


Q ss_pred             HCCCCE----EECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             709989----9458531310976668898459216268989998721899887766422443324333455799987320
Q gi|254780268|r   72 VTGADA----IHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAK  147 (443)
Q Consensus        72 ~~~~da----ihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~  147 (443)
                      +.+.|.    +|.+||   |+..+...|+..||+|+|+++.+..++.||..+|++++++||||+||......+......+
T Consensus        54 ~~~~D~vf~~lHG~~G---EDG~iQglLe~~~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~~~~~~  130 (304)
T PRK01372         54 ELGFDRVFNALHGRGG---EDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTAPWVVLTRAEDLLAAID  130 (304)
T ss_pred             HCCCCEEEEECCCCCC---CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHH
T ss_conf             3399999990689998---5649999999859983579989987765389999999986999898499865313999987


Q ss_pred             CCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCC-
Q ss_conf             0330122000234578216888750668999998754321258998168844342011033157773478702365665-
Q gi|254780268|r  148 EIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERD-  226 (443)
Q Consensus       148 ~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erd-  226 (443)
                      ++|||++|||+.+|+|.|+.+|++.+||.++++.+.++      |+.+|||+||+| ||++|.|++|.   +.+..|-. 
T Consensus       131 ~l~~P~iVKP~~~GSSiGv~~V~~~~el~~ai~~a~~~------~~~vLvE~~I~G-rEitv~Vlg~~---~lp~~eI~~  200 (304)
T PRK01372        131 KLGLPLVVKPAREGSSVGVTKVKEADELPAALELAFKY------DDEVLVEKYIKG-RELTVAVLGGK---ALPVIRIVP  200 (304)
T ss_pred             HHCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHC------CCCCEEEEEECC-EEEEEEEECCC---CCCEEEEEC
T ss_conf             61898799766888666538966988999999998744------886254502565-69999998997---775389945


Q ss_pred             ----CCCCCCC--CEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCC
Q ss_conf             ----4211356--22554034455889999999999999886515434102458972-883499822765
Q gi|254780268|r  227 ----CSVQRRN--QKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTR  289 (443)
Q Consensus       227 ----CSiQrr~--qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~R  289 (443)
                          .+.+..+  .+-.++.||+ |++++.+++++.|.++++++||+|+++|||+++ +|++||||+||=
T Consensus       201 ~~~fyDy~aKY~~~~s~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~g~aRvDf~~~~~g~~~~lEiNt~  269 (304)
T PRK01372        201 PGEFYDYEAKYLAGDTQYLCPAG-LPAELEAELQALALRAYKALGCRGWGRVDFMLDEDGKPYLLEVNTS  269 (304)
T ss_pred             CCCCCCHHHCCCCCCCCEECCCC-CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEECCC
T ss_conf             99875776612557741100689-9999999999999999998499736988999907997899983399


No 34 
>KOG0370 consensus
Probab=100.00  E-value=2.4e-35  Score=271.37  Aligned_cols=356  Identities=21%  Similarity=0.325  Sum_probs=277.0

Q ss_pred             EEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHH
Q ss_conf             6866447099-----------99999988880965999858557718776758579991899853000698999999987
Q gi|254780268|r    4 KILIANRGEI-----------ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEV   72 (443)
Q Consensus         4 ~iLianrGei-----------a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~   72 (443)
                      -++|-+.|.-           |+..+|++|.+|++||+||-+|++.|++..++|.+|+-.        +..+.++++-..
T Consensus       920 g~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~g~kTimvNyNPETVSTDyDecdrLYFee--------is~E~vmDiYe~  991 (1435)
T KOG0370         920 GVMVLGSGVYRIGSSVEFDWCAVGCARTLRKLGKKTIMVNYNPETVSTDYDECDRLYFEE--------ISYERVMDIYEL  991 (1435)
T ss_pred             CEEEECCCCEECCCCEEECHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHH--------HHHHHHHHHHHH
T ss_conf             659972432563562055133554799999709846999568654357567776676754--------236653435543


Q ss_pred             CCCCEEE---CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf             0998994---5853131097666889845921626898999872189988776642244332433345579998732003
Q gi|254780268|r   73 TGADAIH---PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEI  149 (443)
Q Consensus        73 ~~~daih---PGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~i  149 (443)
                      .++.++.   .|+  |..|  .|-.+.++|.+++|.||+.|+.++|+.+|-+++.+.||..++|....+.+++..|++++
T Consensus       992 E~~~G~iis~GGQ--~pnN--iA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wkelt~~~eA~~F~~~V 1067 (1435)
T KOG0370         992 ENSEGIIISVGGQ--LPNN--IALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKELTSLEEAKKFAEKV 1067 (1435)
T ss_pred             CCCCCEEEEECCC--CCCH--HHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHC
T ss_conf             0677269983684--8620--21375862886754885761114567789998877278861023322688999999865


Q ss_pred             CCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEE-ECCCCCC--CCCCC-
Q ss_conf             3012200023457821688875066899999875432125899816884434201103315777-3478702--36566-
Q gi|254780268|r  150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFG-DGMGNAI--HFGER-  225 (443)
Q Consensus       150 GyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~-D~~g~~v--~l~er-  225 (443)
                      |||++++|++..+|-.|.+|++++||+..+++|...+    .|.+|.+-|||+++|||||+.++ ||  +++  ++.|. 
T Consensus      1068 gYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs----~dhPVVisKfie~AkEidvDAVa~~G--~~~~haiSEHv 1141 (1435)
T KOG0370        1068 GYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVS----PDHPVVISKFIEGAKEIDVDAVASDG--KVLVHAISEHV 1141 (1435)
T ss_pred             CCCEEECCCCEECCHHHHHHHCHHHHHHHHHHHHHCC----CCCCEEHHHHHCCCCEECHHHHCCCC--EEEEEEHHHHH
T ss_conf             9966851101331015552104788999999776408----77977727754445010312310478--18998623341


Q ss_pred             --------CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHH
Q ss_conf             --------542113562255403445588999999999999988651543410245897288349982276543320167
Q gi|254780268|r  226 --------DCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVT  297 (443)
Q Consensus       226 --------dCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vt  297 (443)
                              |.+       +  ..|++.|+++..+++.+.+.++++++...|..|+||+.+++++-++|.|-|.++..|+.
T Consensus      1142 EnAGVHSGDAt-------l--v~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k~n~lkVIECN~RaSRSFPFv 1212 (1435)
T KOG0370        1142 ENAGVHSGDAT-------L--VLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAKDNELKVIECNVRASRSFPFV 1212 (1435)
T ss_pred             HCCCCCCCCEE-------E--ECCCHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEEEEEEECCCCCE
T ss_conf             12465578603-------7--57811249889999999999998886166874379995498078999640343366630


Q ss_pred             HHHHCCCCHHHHHHHHHCCCCCCCCCCC------CCCHHHHHHHCCCCCCC-C-CCCCCCCEEEEECCCCCCEEEECC--
Q ss_conf             8863256201123222102222211333------32012453302456622-1-111244215886689984467776--
Q gi|254780268|r  298 EAITGIDLVHEQIYVASENRLSVQQKDI------TFSGHAIECRINAEDPE-N-FIPNPGEITYFHAPGGLGIRMDSA--  367 (443)
Q Consensus       298 e~~tgvdlv~~~~~~a~g~~l~~~~~~i------~~~g~aie~Ri~aEdp~-~-f~Ps~G~i~~~~~p~~~gvRvDt~--  367 (443)
                      +++-|+|++..+.+...|.++.......      ..-.+|+ -|+-.-||- + -+-|+|.+..|-.     -|.+.+  
T Consensus      1213 SKtlgvdfi~~At~~i~g~~~~~~~~~~~dyV~vKvPqFSf-~RLagADp~LgvEMaSTGEVAcFG~-----~~~eaylk 1286 (1435)
T KOG0370        1213 SKTLGVDFIALATRAIMGVPVPPDLLLHPDYVAVKVPQFSF-SRLAGADPVLGVEMASTGEVACFGE-----DRYEAYLK 1286 (1435)
T ss_pred             EHHCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCC-CCCCCCCCEEEEEECCCCCEEECCC-----CHHHHHHH
T ss_conf             01058319999889973897887535578868997465454-0004898634567515551344265-----26999999


Q ss_pred             --CCCCCEECCCCCCCEEEEEEECCCHHHHHH
Q ss_conf             --023877077768433899995599899999
Q gi|254780268|r  368 --SYQGYTVPSYYDSLIAKLIVHGKNRKECMM  397 (443)
Q Consensus       368 --~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~  397 (443)
                        ..+|..+     |.=.-+|..|..|.+-+.
T Consensus      1287 am~sTgF~i-----Pk~~i~i~ig~~k~ell~ 1313 (1435)
T KOG0370        1287 AMLSTGFKI-----PKKNILISIGSYKPELLP 1313 (1435)
T ss_pred             HHHHCCCCC-----CCCCEEEEECCCHHHHHH
T ss_conf             998537634-----688717883464588889


No 35 
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=100.00  E-value=1.9e-32  Score=250.76  Aligned_cols=366  Identities=20%  Similarity=0.287  Sum_probs=278.3

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf             06866447099999999888809659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY   82 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy   82 (443)
                      +|+|.-+.||....+.=.|++||+++|+|...+|.-+++  .||.+|.+       +.||.++|-.+.++.+.|.|.|-.
T Consensus        13 ~kvmLLGSGELGKEvaIe~QRLG~eVIAVDrY~~APAmq--VAhrs~Vi-------~MlD~~al~avv~re~Pd~IVpEi   83 (394)
T COG0027          13 TKVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQ--VAHRSYVI-------DMLDGDALRAVVEREKPDYIVPEI   83 (394)
T ss_pred             EEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHH--HHHHEEEE-------ECCCHHHHHHHHHHHCCCEEEEHH
T ss_conf             489996388644699998886387799963768980664--21111345-------456999999999865898133135


Q ss_pred             CHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf             31310976668898459216268989998721899887766-42244332433345579998732003301220002345
Q gi|254780268|r   83 GFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTA-QQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGG  161 (443)
Q Consensus        83 GfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a-~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gG  161 (443)
                      -..+-  +---.+|++|...| |++++.+.+.|+..-|+++ +++|+||.++....+.++..+.+++||||+++||..+.
T Consensus        84 EAI~t--d~L~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfPcvvKPvMSS  160 (394)
T COG0027          84 EAIAT--DALVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSS  160 (394)
T ss_pred             HHHHH--HHHHHHHHCCCEEC-CCHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCC
T ss_conf             66647--88999986796675-5327777342689899988997299976632135599999999974997021332026


Q ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEE--E--ECCC-CCCCCCCCC------CCCC
Q ss_conf             782168887506689999987543212589981688443420110331577--7--3478-702365665------4211
Q gi|254780268|r  162 GGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIF--G--DGMG-NAIHFGERD------CSVQ  230 (443)
Q Consensus       162 GG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl--~--D~~g-~~v~l~erd------CSiQ  230 (443)
                      +|+|.++|++++|++++|+.|+.-+..  ++++|++|.||+.-  +|+.+|  +  |+.+ -|-++|.|+      -|+|
T Consensus       161 SGkGqsvv~~~e~ve~AW~~A~~g~R~--~~~RVIVE~fv~fd--~EITlLtvr~~~~~~~Fc~PIGHrq~dgdY~ESWQ  236 (394)
T COG0027         161 SGKGQSVVRSPEDVEKAWEYAQQGGRG--GSGRVIVEEFVKFD--FEITLLTVRAVDGTGSFCAPIGHRQEDGDYRESWQ  236 (394)
T ss_pred             CCCCCEEECCHHHHHHHHHHHHHCCCC--CCCCEEEEEEECCE--EEEEEEEEEEECCCCCCCCCCCCCCCCCCHHCCCC
T ss_conf             889821435987889999999754788--88718999873232--79999999975588776777664057887010368


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHH
Q ss_conf             35622554034455889999999999999886515434102458972883499822765433201678863256201123
Q gi|254780268|r  231 RRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQI  310 (443)
Q Consensus       231 rr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~  310 (443)
                                |. .+++...++.+..|.++..++|-.|+.-||+++..+++||.||.||=.=+--||=-...+.--++++
T Consensus       237 ----------P~-~mS~~al~~A~~IA~~vt~aLGG~GlFGVElfv~gDeV~FsEVSPRPHDTGmVTLiSq~lsEF~LH~  305 (394)
T COG0027         237 ----------PQ-EMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGDEVIFSEVSPRPHDTGMVTLISQDLSEFALHV  305 (394)
T ss_pred             ----------CC-CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCHHHHHHH
T ss_conf             ----------41-0389999999999999998605863036899972887898525789888724999706531899999


Q ss_pred             HHHHCCCCC-CCCCCCCC-CHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCC--CCCCEECCCCCCCEEEEE
Q ss_conf             222102222-21133332-01245330245662211112442158866899844677760--238770777684338999
Q gi|254780268|r  311 YVASENRLS-VQQKDITF-SGHAIECRINAEDPENFIPNPGEITYFHAPGGLGIRMDSAS--YQGYTVPSYYDSLIAKLI  386 (443)
Q Consensus       311 ~~a~g~~l~-~~~~~i~~-~g~aie~Ri~aEdp~~f~Ps~G~i~~~~~p~~~gvRvDt~~--~~G~~i~~~yDsmlaKiI  386 (443)
                      +..+|.|.+ .+|  ++| ..|.|-+-..+.+|.    -.|.-..+..|. ..||+-+--  +.+        --++-..
T Consensus       306 RAiLGLPi~~i~~--~~P~AS~vI~~~~~~~~~~----f~~l~~AL~~p~-t~vRlFGKP~~~~~--------RRmGVaL  370 (394)
T COG0027         306 RAILGLPIPEIRQ--ISPAASAVILAQETSQAPT----FDGLAEALGVPD-TQVRLFGKPEADGG--------RRLGVAL  370 (394)
T ss_pred             HHHHCCCCCCEEE--ECCCCCCEEECCCCCCCCC----HHHHHHHHCCCC-CEEEEECCCCCCCC--------CEEEEEE
T ss_conf             9995897642145--2543001560333346775----222888745898-61798068756667--------5046898


Q ss_pred             EECCCHHHHHHHHHHHHHHCEECC
Q ss_conf             955998999999998765408826
Q gi|254780268|r  387 VHGKNRKECMMRLNRALNEIIIDG  410 (443)
Q Consensus       387 ~~g~~R~~Ai~~l~~aL~~~~I~G  410 (443)
                      +++++-++|+.|++.+.+...|.+
T Consensus       371 A~a~~Ve~Are~A~~aa~~i~v~~  394 (394)
T COG0027         371 ATAESVEEARERARKAASAIEVKG  394 (394)
T ss_pred             ECCCCHHHHHHHHHHHHHHEECCC
T ss_conf             427619999999998876055689


No 36 
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=100.00  E-value=7.7e-36  Score=274.91  Aligned_cols=109  Identities=62%  Similarity=0.958  Sum_probs=107.0

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf             70686644709999999988880965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r    2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG   81 (443)
Q Consensus         2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG   81 (443)
                      |||||||||||||+|++||||+||++||+|||++|++|+|+++||++|++++++..++|||++.|+++|+++++|+||||
T Consensus         1 i~kvLIanrGeiA~ri~rt~re~gi~~v~i~s~~d~~s~~~~~ad~~~~~~~~~~~~~Yl~~~~Ii~ia~~~~~~aihpG   80 (109)
T pfam00289         1 IKKVLVANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPGPASESYLNIERILDIAEKEGADAIHPG   80 (109)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEECC
T ss_conf             94899988879999999999986997999963344152256650576534799832111379999999998188968779


Q ss_pred             CCHHHCCHHHHHHHHHCCCEEECCCHHHH
Q ss_conf             53131097666889845921626898999
Q gi|254780268|r   82 YGFLSENAKFAEILEDHHIKFIGPSSEHI  110 (443)
Q Consensus        82 yGfLsEn~~fa~~~e~~Gi~fIGPs~~ai  110 (443)
                      |||||||++|++.|+++|++||||++++|
T Consensus        81 yGflsEn~~fa~~~~~~Gi~fiGPs~~~i  109 (109)
T pfam00289        81 YGFLSENAEFAEACEKAGITFIGPSPEAI  109 (109)
T ss_pred             CCCCCCCHHHHHHHHHCCCEEECCCHHHC
T ss_conf             76233599999999988898999583549


No 37 
>pfam02785 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=100.00  E-value=4.1e-36  Score=276.87  Aligned_cols=106  Identities=51%  Similarity=0.925  Sum_probs=104.6

Q ss_pred             HHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECCC
Q ss_conf             330245662-2111124421588668998446777602387707776843389999559989999999987654088263
Q gi|254780268|r  333 ECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGI  411 (443)
Q Consensus       333 e~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv  411 (443)
                      ||||||||| +||+|++|+|+.|++|+++|||+|+++++|++|+++|||||||||+||+||++|++||.+||+++.|.|+
T Consensus         1 e~Ri~AEdp~~~F~P~~G~i~~~~~p~g~gvRvDt~v~~G~~v~~~YDsmlAKvI~~g~~R~~Ai~kl~~aL~~~~I~Gv   80 (107)
T pfam02785         1 EARIYAEDPANGFLPSPGKITRYRFPGGPGVRVDSGVYEGDEVSPYYDSMIAKLIVHGPDREEAIARLRRALAETRIEGV   80 (107)
T ss_pred             CCEEEEECCCCCCCCCCEEEEEEECCCCCCEEEECCEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCC
T ss_conf             97897254999912698886899879999989874851598358440369999997089999999999999997650685


Q ss_pred             CCCHHHHHHHHCCHHHHCCCCCHHHHH
Q ss_conf             778889998968988955886531687
Q gi|254780268|r  412 KTTIPLFQKLIKNEDIIEGNYDIHWLE  438 (443)
Q Consensus       412 ~TN~~~l~~il~~~~f~~g~~~T~fi~  438 (443)
                      +||++||++||++|+|++|+++|+|||
T Consensus        81 ~TN~~~l~~il~~~~f~~g~~~T~fld  107 (107)
T pfam02785        81 KTNIPFLRAILEHPDFRAGEVDTGFLE  107 (107)
T ss_pred             CCCHHHHHHHHCCHHHCCCCCCCCCCC
T ss_conf             644999999977831336996133609


No 38 
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=100.00  E-value=3.3e-32  Score=249.15  Aligned_cols=275  Identities=21%  Similarity=0.283  Sum_probs=196.0

Q ss_pred             CEEEEEECCC-----HH----HHHHHHHHHHCCCEEEEECCCHHHCCC-------CHHHCCEEEECCCCCCCCHHCCHHH
Q ss_conf             7068664470-----99----999999888809659998585577187-------7675857999189985300069899
Q gi|254780268|r    2 ISKILIANRG-----EI----ALRILRACKELGIPTVAVHSTADSGAM-------HVRLADESVCIGPPSSKDSYLNIQQ   65 (443)
Q Consensus         2 ~~~iLianrG-----ei----a~riira~~elGi~tv~v~s~~D~~a~-------~~~~ADe~~~i~~~~~~~sYldi~~   65 (443)
                      -+||.|.-=|     ||    |..|.+++++.|++++.+|-+.|..-.       .....+....... ...........
T Consensus         3 k~kI~Vl~GG~S~EreVSl~Sg~~v~~~L~~~~y~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   81 (344)
T PRK01966          3 KIRVALLFGGRSAEHEVSLVSAKNILKALDKDKFEVIPIGIDKDGRWYLIDGSNMELNSDDPLRIEEK-KSAELLLALPG   81 (344)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCHHHCCCCCCCCCCCC-CCCCCCCCCCC
T ss_conf             76899995878821899999999999976150885999998379887725641111024542101234-44322234553


Q ss_pred             HHHHHHHCCCC----EEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCH--
Q ss_conf             99999870998----994585313109766688984592162689899987218998877664224433243334557--
Q gi|254780268|r   66 IVAACEVTGAD----AIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYP--  139 (443)
Q Consensus        66 ii~~a~~~~~d----aihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~--  139 (443)
                      ...-.+...+|    ++|.+||   ||..+...|+..||+|.|+++.+..++.||..+|++++++||||+||......  
T Consensus        82 ~~~~~~~~~~D~vf~alHG~~G---EDG~iQglLe~l~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~  158 (344)
T PRK01966         82 FYEGQLIIEVDVVFPVLHGPPG---EDGTIQGLLELLNIPYVGCGVLASAVSMDKILTKRLLAAAGIPQAPYVVLTRSRR  158 (344)
T ss_pred             CCCCCCCCCCCEEEEECCCCCC---CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf             2210003567899990689997---6709999999759993688489999876699999999987999898399816662


Q ss_pred             -HHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCC
Q ss_conf             -9998732003301220002345782168887506689999987543212589981688443420110331577734787
Q gi|254780268|r  140 -HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGN  218 (443)
Q Consensus       140 -~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~  218 (443)
                       ........+++||++|||+.+|+|.|+.+|++.+||.++++.+.++      +..+|||+||+| ||+.|-|++.. +.
T Consensus       159 ~~~~~~~~~~l~~P~iVKP~~~GSSiGvs~v~~~~el~~ai~~a~~~------~~~vlvEefI~G-rE~tv~vl~~~-~~  230 (344)
T PRK01966        159 EEAIAEVEEKLGLPVFVKPANLGSSVGISKVKNEEELEAALDLAFEY------DRKVLVEQGIKG-REIECAVLGYN-DE  230 (344)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHC------CCCCEEECCCCC-EEEEEEEECCC-CC
T ss_conf             34589999861898799328996343259968999999999999863------975057512444-89999997489-94


Q ss_pred             CCCCC--CCC-----CCCCCCCC---EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECC
Q ss_conf             02365--665-----42113562---2554034455889999999999999886515434102458972-8834998227
Q gi|254780268|r  219 AIHFG--ERD-----CSVQRRNQ---KIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMN  287 (443)
Q Consensus       219 ~v~l~--erd-----CSiQrr~q---kiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN  287 (443)
                      ...+.  |-.     -+.+..++   +.-++.|| .+++++.++++++|.++++++||+|+++|+|++| +|++||||+|
T Consensus       231 ~~~l~~~Ei~~~~~fydy~~KY~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~~lg~rg~~RiDf~~d~~g~~y~lEvN  309 (344)
T PRK01966        231 PVASVPGEIVKDNDFYDYEAKYIDDSGATLVIPA-DLSEELTEQIRELAIKAFKALGCSGLARVDFFLTEDGEIYLNEIN  309 (344)
T ss_pred             EEEECCEEECCCCCCCCHHHCCCCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEEE
T ss_conf             6773115871798751488810468971696678-899999999999999999981997279898999089988999820


Q ss_pred             CC
Q ss_conf             65
Q gi|254780268|r  288 TR  289 (443)
Q Consensus       288 ~R  289 (443)
                      |=
T Consensus       310 t~  311 (344)
T PRK01966        310 TL  311 (344)
T ss_pred             CC
T ss_conf             89


No 39 
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=100.00  E-value=6.2e-35  Score=268.49  Aligned_cols=106  Identities=56%  Similarity=1.054  Sum_probs=104.5

Q ss_pred             HHHCCCCCC-CCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECCC
Q ss_conf             330245662-2111124421588668998446777602387707776843389999559989999999987654088263
Q gi|254780268|r  333 ECRINAEDP-ENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGI  411 (443)
Q Consensus       333 e~Ri~aEdp-~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv  411 (443)
                      ||||||||| ++|+|++|+|+.|++|+++|||+|+|+++|++||++|||||||||+||+||++|++||.+||+++.|.|+
T Consensus         1 E~Ri~AEdp~~~F~P~~G~i~~~~~p~~~gvRvDt~~~~G~~vs~~YDpmiAKlI~~g~~R~~Ai~~l~~aL~~~~i~Gi   80 (107)
T smart00878        1 ECRINAEDPANGFLPSPGRITRYRFPGGPGVRVDSGVYEGYEVPPYYDSMIAKLIVHGETREEAIARLRRALDEFRIEGV   80 (107)
T ss_pred             CCEEEEECCCCCEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCEECCC
T ss_conf             93997465999901698896899858999889985431788458540269999998076699999999998862675173


Q ss_pred             CCCHHHHHHHHCCHHHHCCCCCHHHHH
Q ss_conf             778889998968988955886531687
Q gi|254780268|r  412 KTTIPLFQKLIKNEDIIEGNYDIHWLE  438 (443)
Q Consensus       412 ~TN~~~l~~il~~~~f~~g~~~T~fi~  438 (443)
                      +||++||++||++++|++|+++|+|||
T Consensus        81 ~TN~~~L~~il~~~~f~~g~~~T~~ld  107 (107)
T smart00878       81 KTNIPFLRALLRHPDFRAGDVDTGFLE  107 (107)
T ss_pred             CCCHHHHHHHHCCHHHCCCCCCCCCCC
T ss_conf             644999999978830236996044619


No 40 
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit; InterPro: IPR005875    Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This family represents PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, which catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.    PurK belongs to the ATP grasp superfamily of C-N ligase enzymes. Each subunit of PurK is composed of three domains (A, B, and C). The B domain contains a flexible, glycine-rich loop (B loop, T123-G130) that is disordered in the sulphate-PurK structure and becomes ordered in the MgADP-PurK structure. MgADP is wedged between the B and C domains, as with all members of the ATP grasp superfamily. Other enzymes in this superfamily contain a conserved Omega loop proposed to interact with the B loop, define the specificity of their nonnucleotide substrate, and protect the acyl phosphate intermediate formed from this substrate. PurK contains a minimal Omega loop without conserved residues. In the reaction catalyzed by PurK, carboxyphosphate is the putative acyl phosphate intermediate. The sulphate of the sulphate ion-liganded PurK interacts electrostatically with Arg 242 and the backbone amide group of Asn 245, components of the J loop of the C domain. This sulphate may reveal the location of the carboxyphosphate binding site. Conserved residues within the C-terminus of the C domain define a pocket that is proposed to bind AIR in collaboration with an N-terminal strand loop helix motif in the A domain (P loop, G8-L1). The P loop is proposed to bind the phosphate of AIR on the basis of similar binding sites observed in PurN and PurE and proposed in PurD and PurT, four other enzymes in the purine pathway .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=100.00  E-value=2.9e-31  Score=242.39  Aligned_cols=263  Identities=26%  Similarity=0.387  Sum_probs=225.1

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCC--EEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf             6866447099999999888809659998585577187767585--79991899853000698999999987099899458
Q gi|254780268|r    4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLAD--ESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG   81 (443)
Q Consensus         4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~AD--e~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG   81 (443)
                      +|=|.+-|.-|-=+..+++.||+++.++  +++.++|..+.||  +.+..       +|.|.++|-+.|+.|++-..   
T Consensus         1 ~vGilGGGQLG~M~~~aA~~LG~~~~VL--~~~~~~PA~q~Ad~~~~v~a-------~~~d~~~i~~La~~cDviT~---   68 (386)
T TIGR01161         1 TVGILGGGQLGRMLALAAKKLGIKVAVL--DPDANSPAKQVADSREHVLA-------SFTDPEAIRELAEACDVITF---   68 (386)
T ss_pred             CEEEEECCHHHHHHHHHHHHCCCEEEEE--CCCCCCCCCCCCCCCCEEEE-------EECCHHHHHHHHHHCCEEEE---
T ss_conf             9689718848999999871279589985--48989731112898557998-------51487899999976565543---


Q ss_pred             CCHHHCCHH--HHHHHHHCC--CEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC--CHHHHHHHHHCCCCHHHH
Q ss_conf             531310976--668898459--21626898999872189988776642244332433345--579998732003301220
Q gi|254780268|r   82 YGFLSENAK--FAEILEDHH--IKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV--YPHTAMPIAKEIGFPVLV  155 (443)
Q Consensus        82 yGfLsEn~~--fa~~~e~~G--i~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~--~~~ea~~~a~~iGyPvii  155 (443)
                         =-|+-+  .=+.|+..|  +++. |+++++....||...|++++++|+||+||....  +.++.....+++|||+||
T Consensus        69 ---E~Ehv~~~~L~~L~~~g~~~~~~-P~~~~l~~~~dk~~qK~~L~~~g~~vp~f~~~~~~~~~~~~~~~~~~g~p~Vl  144 (386)
T TIGR01161        69 ---EFEHVDVEALEKLEARGDKVKVR-PSPEALAIIQDKLTQKQFLQKLGLPVPPFVVIEIKDEEELDSALQELGFPVVL  144 (386)
T ss_pred             ---EECCCCCHHHHHHHHCCCEEEEE-CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHCCCCEEE
T ss_conf             ---10137856789998359847760-38899998836589999999668998841202236842578999873984799


Q ss_pred             HCCCCCC-CCEEEEEEECHHHHHHHHHHHHHHHCCCCCC--CEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             0023457-8216888750668999998754321258998--168844342011033157773478702365665421135
Q gi|254780268|r  156 KASAGGG-GRGMRIAYSENDLSEAIDQARSEALAAFGND--AVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRR  232 (443)
Q Consensus       156 Kp~~gGG-G~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~--~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr  232 (443)
                      |...||+ |||.+++++++|+..+++.        +++.  .+++|+||+.-+|+.|-|.|+..|....++--+ ++|+.
T Consensus       145 K~~~gGYDGrGq~~i~~~~~~~~~~~~--------~~~~~~~~~~E~fV~F~~Elsv~vaR~~~G~~~~YP~ve-n~~~d  215 (386)
T TIGR01161       145 KARRGGYDGRGQFVIKSEADLPQALKE--------LGDKEEELIVEEFVPFERELSVIVARSADGEIAFYPVVE-NIHQD  215 (386)
T ss_pred             EEEECCCCCCCCEEECCHHHHHHHHHH--------CCCCCEEEEEEECCCCCEEEEEEEEECCCCCEEECCCEE-EEEEC
T ss_conf             842065277310897474328899985--------288840589852356200699999977897488828612-35652


Q ss_pred             --CCEEEEECCCCCCCHHH---HHHHHHHHHHHHHHHCCCCCCEEE-EEE--CCC----CEEEEECCCCCC
Q ss_conf             --62255403445588999---999999999988651543410245-897--288----349982276543
Q gi|254780268|r  233 --NQKIWEEAHSPVISAQD---RTEIGETCVKAMKKIDYRGAGTIE-FLY--ENG----QFYFIEMNTRLQ  291 (443)
Q Consensus       233 --~qkiiEeaPap~l~~~~---~~~i~~~A~~~~~~~g~~g~~tvE-Fl~--~~~----~~yflEvN~Rlq  291 (443)
                        +=-..=.+|||.+++..   .++++++|.++++.+||+|+.+|| |++  .+|    ++.+||+.||..
T Consensus       216 dagIl~~~~aPAPa~p~~~~Q~~~~A~~~A~~~~~~L~~VG~~avE~F~~Pa~dGP~P~~LLvNElAPR~H  286 (386)
T TIGR01161       216 DAGILRLVVAPAPAVPDALVQQQKKAQELARRLAEELDYVGVLAVEMFLLPAKDGPEPDELLVNELAPRPH  286 (386)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEEEECCCCC
T ss_conf             77877898633777834578999999999999998619617888999830688789512056610257889


No 41 
>PRK07206 hypothetical protein; Provisional
Probab=99.97  E-value=6.9e-29  Score=225.55  Aligned_cols=390  Identities=16%  Similarity=0.180  Sum_probs=265.9

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf             97068664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP   80 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP   80 (443)
                      |+|+|+|.+-=--+.....+++++|+.+|.|.|.++....+...-|+...-. .   ..--|.+.+++..++.+++||.|
T Consensus         1 ~~~~vviVDp~StG~~la~a~~~~G~~~v~V~S~~~~~~~~~~~f~~~~~~~-~---~~~~~~~~~~~~~~~~~~~aVi~   76 (415)
T PRK07206          1 MMKKVVIVDPFSSGKFLAPAFKKRGIELIAVTSACDLDPLYYAGFDENIYRQ-Q---RIIKHIDETIEFLRQLGPDAVIA   76 (415)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHCCCCHHHHHH-H---HCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             9855999867651879999999739828999837988435442324343433-2---10578999999998629729997


Q ss_pred             CCCHHHCCH-HHH-HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHC---CCCHHHH
Q ss_conf             853131097-666-88984592162689899987218998877664224433243334557999873200---3301220
Q gi|254780268|r   81 GYGFLSENA-KFA-EILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKE---IGFPVLV  155 (443)
Q Consensus        81 GyGfLsEn~-~fa-~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~---iGyPvii  155 (443)
                      |.    |.. .+| +..+..|+++ |..+.....-.||..+|+.++++|+|++.+....+.+|+..++++   +|||+||
T Consensus        77 g~----E~gV~lAd~La~~LgLp~-~N~~~~~~aRRdK~~m~~~L~~aGl~~~~~~~~~~~~e~~~~~~~~~~~~~PvVv  151 (415)
T PRK07206         77 GA----ESGVELADRLAERLGLCY-ANAPALSSARRNKYEMINALANAGLPAIRQIDTADWEEASAWIRVNNLWDSPVVI  151 (415)
T ss_pred             CC----HHHHHHHHHHHHHHCCCC-CCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEE
T ss_conf             85----565999999999868998-9955688774599999999997599855388529999999999860557999899


Q ss_pred             HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCC--CCCCEEEEEEEEEEEECCEEEE-EECCCCCCCCCCCCCCCCCC
Q ss_conf             00234578216888750668999998754321258--9981688443420110331577-73478702365665421135
Q gi|254780268|r  156 KASAGGGGRGMRIAYSENDLSEAIDQARSEALAAF--GNDAVYIEKYLENPRHIEVQIF-GDGMGNAIHFGERDCSVQRR  232 (443)
Q Consensus       156 Kp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~f--gd~~vlvEk~i~~~rhiEvqVl-~D~~g~~v~l~erdCSiQrr  232 (443)
                      ||.+|.||.|+++|++.+|+.++|+...... ..+  .+..+++|+||+|+ |+-|..+ .||.-.+..++.++-.--..
T Consensus       152 KP~~gagS~gV~~c~~~~el~~a~~~i~~~~-n~~g~~~~~vLveEyl~G~-EysVe~vs~~G~h~v~~i~~y~k~~~~~  229 (415)
T PRK07206        152 KPLESAGSDGVFFCPDKQDAYHAFNAILGKA-NKLGLVNESVLVQEFLIGT-EYVVNTVSINGNHLVTEIVRYHKTSLNR  229 (415)
T ss_pred             ECCCCCCCCCEEEECCHHHHHHHHHHHHCCC-CCCCCCCCCEEEEECCCCC-EEEEEEEEECCCEEEEEEEEECCCCCCC
T ss_conf             5899998799899799999999999985665-4357867538875414685-7899999878968999999972556899


Q ss_pred             CCEEEEE-CCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEECCCCEEEEECCCCCCC--CCHHHHHHHCCCCHHH
Q ss_conf             6225540-3445588999999999999988651543-4102458972883499822765433--2016788632562011
Q gi|254780268|r  233 NQKIWEE-AHSPVISAQDRTEIGETCVKAMKKIDYR-GAGTIEFLYENGQFYFIEMNTRLQV--EHPVTEAITGIDLVHE  308 (443)
Q Consensus       233 ~qkiiEe-aPap~l~~~~~~~i~~~A~~~~~~~g~~-g~~tvEFl~~~~~~yflEvN~Rlqv--eh~vte~~tgvdlv~~  308 (443)
                      +.-+.+. -+.| .++...++|.+++.++++++|++ |..+.|++++++.+.++|+|+|+.=  --.+.+.+||.+.+.+
T Consensus       230 ~~~~~~~~~~~p-~~~~~~~~l~~y~~~~l~ALGi~~G~~H~Ev~lt~~gp~liE~~~R~~G~~~~~~~~~~~g~~~~~~  308 (415)
T PRK07206        230 GSVVYDYDELLP-CTSPEYQELVDYTKKALDALGIKNGPAHAEIMLTSDGPVLIETGARLDGGLHPDAARVATGFSQLDL  308 (415)
T ss_pred             CCEEEECCEECC-CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCHHHHHHCCCCCHHHH
T ss_conf             865653203569-9848999999999999998387757721899982898289996787789864789987058799999


Q ss_pred             HHHHHHCCCCCCCC-CCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEC----CCCCC-EEEECCCCCCCEECCCCCCC-
Q ss_conf             23222102222211-3333201245330245662211112442158866----89984-46777602387707776843-
Q gi|254780268|r  309 QIYVASENRLSVQQ-KDITFSGHAIECRINAEDPENFIPNPGEITYFHA----PGGLG-IRMDSASYQGYTVPSYYDSL-  381 (443)
Q Consensus       309 ~~~~a~g~~l~~~~-~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i~~~~~----p~~~g-vRvDt~~~~G~~i~~~yDsm-  381 (443)
                      .+...++..-.... ....++.|+..+-+.       -|..|+++.+..    -.-|+ .++..++..|+.+++--|-. 
T Consensus       309 ~v~~~l~~~~~~~~~~~y~~~~~~~~v~Li-------s~~~G~l~~~~gl~~i~~Lpsf~~~~~~~~~G~~v~~T~Dl~s  381 (415)
T PRK07206        309 TAQSLADPDRFRETRESYKLQAHSLNVFLI-------SQAAGVISGKHFLRELQKLPSFKKSVYYVNEGDNVKVTVDLFS  381 (415)
T ss_pred             HHHHHCCCHHCCCCCCCCCCCCEEEEEEEE-------CCCCCEEECCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf             999850931104678876644348999985-------3999358577269999838875379996699798088766789


Q ss_pred             -EEEEEEECCCHHHHHHHHHHHHHHCEECC
Q ss_conf             -38999955998999999998765408826
Q gi|254780268|r  382 -IAKLIVHGKNRKECMMRLNRALNEIIIDG  410 (443)
Q Consensus       382 -laKiI~~g~~R~~Ai~~l~~aL~~~~I~G  410 (443)
                       .+-++-...|.++ +.+-.+.++++.-.|
T Consensus       382 ~pG~v~L~~~d~~~-l~~D~~~iR~le~~g  410 (415)
T PRK07206        382 QPGIVYLVHSDKEQ-LEQDYRKIRKMESDG  410 (415)
T ss_pred             CCEEEEEECCCHHH-HHHHHHHHHHHHHCC
T ss_conf             98799997699999-999999999986458


No 42 
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.97  E-value=8.6e-29  Score=224.87  Aligned_cols=293  Identities=21%  Similarity=0.295  Sum_probs=238.0

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf             70686644709999999988880965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r    2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG   81 (443)
Q Consensus         2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG   81 (443)
                      +++|-|.+-|..+.=..-+++.||++++++  +|+.+++..+.||..+.-       .|-|.+++.+.+.++.+-.    
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vL--dp~~~~PA~~va~~~i~~-------~~dD~~al~ela~~~DViT----   67 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVL--DPDADAPAAQVADRVIVA-------AYDDPEALRELAAKCDVIT----   67 (375)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE--CCCCCCCHHHCCCCEEEC-------CCCCHHHHHHHHHHCCEEE----
T ss_conf             976999768699999999998649779995--699999633414315415-------7788899999986298899----


Q ss_pred             CCHHHCC--HHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCC
Q ss_conf             5313109--76668898459216268989998721899887766422443324333455799987320033012200023
Q gi|254780268|r   82 YGFLSEN--AKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASA  159 (443)
Q Consensus        82 yGfLsEn--~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~  159 (443)
                      |-|  ||  .+-.+.++.. .+ +-|++++++...||...|++++++|+||+||....+.+++..+++++|||.|+|...
T Consensus        68 ~Ef--E~V~~~aL~~l~~~-~~-v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~g~p~VlKtr~  143 (375)
T COG0026          68 YEF--ENVPAEALEKLAAS-VK-VFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLGFPAVLKTRR  143 (375)
T ss_pred             EEE--CCCCHHHHHHHHHH-CC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEECC
T ss_conf             851--46988999999961-67-699989988776689999999976999998278579889999999759956998322


Q ss_pred             CCC-CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             457-8216888750668999998754321258998168844342011033157773478702365665421135622554
Q gi|254780268|r  160 GGG-GRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE  238 (443)
Q Consensus       160 gGG-G~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE  238 (443)
                      ||+ |||++++++.+++.........       .+..++|+|++.-||+.|-+.++..|++..++--+ ++|+..--..-
T Consensus       144 gGYDGkGQ~~i~~~~~~~~~~~~~~~-------~~~~vlE~fV~F~~EiSvi~aR~~~G~~~~yP~~e-N~h~~gIl~~s  215 (375)
T COG0026         144 GGYDGKGQWRIRSDADLELRAAGLAE-------GGVPVLEEFVPFEREISVIVARSNDGEVAFYPVAE-NVHRNGILRTS  215 (375)
T ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHC-------CCCEEEEEECCCCEEEEEEEEECCCCCEEEECCCC-EEEECCEEEEE
T ss_conf             65668870894070102356766513-------68636886035664899999985899789806621-01336789999


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf             034455889999999999999886515434102458972-8834998227654332016788632562011232221022
Q gi|254780268|r  239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENR  317 (443)
Q Consensus       239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~  317 (443)
                      .+|| .+++.+.++.+++|.+++++++|+|+..|||++. +|+++++|+.||..=+--.|.....+.=-+.++|.-+|.|
T Consensus       216 iaPa-~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~glP  294 (375)
T COG0026         216 IAPA-RIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVLGLP  294 (375)
T ss_pred             EECC-CCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCC
T ss_conf             7237-689899999999999999975945789999999789848986136898786651233121248999999982999


Q ss_pred             CCC
Q ss_conf             222
Q gi|254780268|r  318 LSV  320 (443)
Q Consensus       318 l~~  320 (443)
                      |+.
T Consensus       295 Lg~  297 (375)
T COG0026         295 LGS  297 (375)
T ss_pred             CCC
T ss_conf             997


No 43 
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.97  E-value=5.6e-27  Score=211.99  Aligned_cols=374  Identities=19%  Similarity=0.255  Sum_probs=254.5

Q ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf             686644709999999988880-9659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r    4 KILIANRGEIALRILRACKEL-GIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY   82 (443)
Q Consensus         4 ~iLianrGeia~riira~~el-Gi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy   82 (443)
                      ||||.+.|-=---+..++.+- .+..|-++.-....+      ++....   ...-+..|.+.|++.|+++++|.+.+|-
T Consensus         6 kVLviGsGGREHAia~kl~~S~~v~~v~~aPGN~G~~------~~~~~~---~~~i~~~d~~~i~~fa~~~~idLvvvGP   76 (426)
T PRK13789          6 KVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFP------DDELLP---ADSFSILDKSSVQSFLKSNPFDLIVVGP   76 (426)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCC------CCCCCC---CCCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf             8999898889999999996198988799988976112------345454---4433866999999999984999999896


Q ss_pred             CHHHCCH---HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCC
Q ss_conf             3131097---6668898459216268989998721899887766422443324333455799987320033012200023
Q gi|254780268|r   83 GFLSENA---KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASA  159 (443)
Q Consensus        83 GfLsEn~---~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~  159 (443)
                          |.+   .++..++++||+..||+.++.++.++|..+|++|+++||||+.+....+.++++++.++.++|++|||..
T Consensus        77 ----E~PL~~Gi~D~l~~~gi~vfGP~k~aA~LE~SK~faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~~~P~VIKaDG  152 (426)
T PRK13789         77 ----EDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEMLPIVIKADG  152 (426)
T ss_pred             ----CHHHHHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCEEEECCC
T ss_conf             ----6888631799984169916895989950512698999999972999760157368999999998579988996787


Q ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCC--CCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             457821688875066899999875432125899--816884434201103315777347870236566542113562255
Q gi|254780268|r  160 GGGGRGMRIAYSENDLSEAIDQARSEALAAFGN--DAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIW  237 (443)
Q Consensus       160 gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd--~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkii  237 (443)
                      .-+|||+.|+.+.+|..++++..+...  .||+  ..|+||+|++| .|+.++++.||. ++++++    +.|. |..+-
T Consensus       153 LAaGKGV~V~~~~~eA~~al~~i~~~~--~fg~ag~~VvIEE~L~G-~E~S~~a~~dG~-~~~~lp----~aQD-hKR~~  223 (426)
T PRK13789        153 LAAGKGVTVATEKKMAKRALKEIFKDK--KFGQSGNQVVIEEFMEG-QEASIFAISDGD-SYFLLP----AAQD-HKRAF  223 (426)
T ss_pred             CCCCCCEEEECCHHHHHHHHHHHHHHH--HHHCCCCEEEEEECCCC-CCEEEEEEECCC-EEEECC----CCCC-CCCCC
T ss_conf             689996695399999999999975442--33035875999974589-844799997299-778688----6444-42133


Q ss_pred             E------------ECCCCCCCHHHHHHHHH----HHHHHHHHHC--CCCCCEEEEEEC-CCCEEEEECCCCC-----CCC
Q ss_conf             4------------03445588999999999----9999886515--434102458972-8834998227654-----332
Q gi|254780268|r  238 E------------EAHSPVISAQDRTEIGE----TCVKAMKKID--YRGAGTIEFLYE-NGQFYFIEMNTRL-----QVE  293 (443)
Q Consensus       238 E------------eaPap~l~~~~~~~i~~----~A~~~~~~~g--~~g~~tvEFl~~-~~~~yflEvN~Rl-----qve  293 (443)
                      |            .+|+|.+++++.+++.+    -.++..++-|  |+|+-=+.||++ +|++++||.|.|+     ||=
T Consensus       224 dgD~GPNTGGMGaysP~p~~~~~~~~~i~~~ii~pt~~~l~~~g~~y~GvLy~GlMlt~~G~pkVlEfN~RfGDPE~q~i  303 (426)
T PRK13789        224 DGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGEPKVVEFNCRFGDPETQCV  303 (426)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEEEEECCCCHHHHH
T ss_conf             79999999987677778668999999999860489999998589998867653289926997699998853189168889


Q ss_pred             CHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHCCCCC-CCCCCCCCCCEEEEECCCCCCEEEECC-C--
Q ss_conf             0167886325620112322210222221133332-0124533024566-221111244215886689984467776-0--
Q gi|254780268|r  294 HPVTEAITGIDLVHEQIYVASENRLSVQQKDITF-SGHAIECRINAED-PENFIPNPGEITYFHAPGGLGIRMDSA-S--  368 (443)
Q Consensus       294 h~vte~~tgvdlv~~~~~~a~g~~l~~~~~~i~~-~g~aie~Ri~aEd-p~~f~Ps~G~i~~~~~p~~~gvRvDt~-~--  368 (443)
                      -|.    -.-||++.....+.|. |+.  .++.. +++++-.=+-+.. |.  .|..|...........++.+..+ +  
T Consensus       304 Lp~----L~~dl~~~~~a~~~g~-L~~--~~~~~~~~~~v~vvlas~GYP~--~~~kg~~I~~~~~~~~~~~vfhagt~~  374 (426)
T PRK13789        304 LAM----LDGDLLELLYAASTGK-IKV--VNLKLKQGAAAVVVLAAQGYPD--SYEKNIPLNLPETSGQNVVLFHAGTKK  374 (426)
T ss_pred             HHH----HHCCHHHHHHHHHHCC-CCC--CCCCCCCCCCEEEEECCCCCCC--CCCCCCEECCCCCCCCCEEEEEEEEEE
T ss_conf             887----4154999999997088-664--5443026740699974688999--777998851866677986999703441


Q ss_pred             CCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECC
Q ss_conf             238770777684338999955998999999998765408826
Q gi|254780268|r  369 YQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDG  410 (443)
Q Consensus       369 ~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~G  410 (443)
                      ..|..++.-  +=+.-++++|.|.++|.++..++++.....|
T Consensus       375 ~~g~l~t~G--GRVL~v~a~g~tl~eA~~~aY~~i~~I~~~g  414 (426)
T PRK13789        375 KDGKVFSSG--GRILGIVAQGKDLKDSVDQAYSFLEKIQAPK  414 (426)
T ss_pred             ECCEEEECC--CCEEEEEEECCCHHHHHHHHHHHHHHCCCCC
T ss_conf             799899735--9389999976999999999999996068999


No 44 
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.96  E-value=1.1e-26  Score=209.95  Aligned_cols=371  Identities=20%  Similarity=0.251  Sum_probs=251.6

Q ss_pred             EEEEECCCHHHHHHHHHHHHCC-CEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf             6866447099999999888809-659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r    4 KILIANRGEIALRILRACKELG-IPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY   82 (443)
Q Consensus         4 ~iLianrGeia~riira~~elG-i~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy   82 (443)
                      ||||.+.|-=---+..++.+-. +..|-+..--...+   ..+.....+       +-.|.+.|++.|+++++|.+.+|-
T Consensus         2 kVLviGsGgREHAla~~l~~s~~v~~v~~aPGN~g~~---~~a~~~~~i-------~~~d~~~i~~~a~~~~iDLvvvGP   71 (415)
T PRK13790          2 NVLVIGAGGREHALAYKLNQSNLVKQVFVIPGNEAMT---PIAEVHTEI-------SESDHQAILDFAKQQNVDWVVIGP   71 (415)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHH---HHCCCCCCC-------CCCCHHHHHHHHHHCCCCEEEECC
T ss_conf             7999887889999999996298989899978955765---223024676-------855899999999981999999896


Q ss_pred             CHHHCCH---HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCC
Q ss_conf             3131097---6668898459216268989998721899887766422443324333455799987320033012200023
Q gi|254780268|r   83 GFLSENA---KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASA  159 (443)
Q Consensus        83 GfLsEn~---~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~  159 (443)
                          |.+   .++..++++||..+||+.++.++.++|..+|++|+++||||+.+....+.+++.++.++.++|++||+..
T Consensus        72 ----E~PL~~GivD~l~~~gi~vfGP~k~aA~LE~SK~faK~~m~~~~IPTa~~~~f~~~~~A~~~l~~~~~p~VIKaDG  147 (415)
T PRK13790         72 ----EQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCELPVVVKKDG  147 (415)
T ss_pred             ----CHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEECCC
T ss_conf             ----0786634888864389759894979951512699999999982979777255087999999986179988996686


Q ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE-
Q ss_conf             4578216888750668999998754321258998168844342011033157773478702365665421135622554-
Q gi|254780268|r  160 GGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE-  238 (443)
Q Consensus       160 gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiE-  238 (443)
                      ..+|||+.++.+.+|..++++..+...  .|  +.|+||+|++| .|+.++++.||. ++++++   |..|. |..+-| 
T Consensus       148 LAaGKGV~V~~~~~eA~~al~~i~~~~--~~--g~VvIEE~L~G-~E~S~~a~~DG~-~~~p~~---~~aQD-hKR~~dg  217 (415)
T PRK13790        148 LAAGKGVIIADTIEAARSAIEIMYGDE--EE--GTVVFETFLEG-EEFSLMTFVNGD-LAVPFD---CIAQD-HKRAFDH  217 (415)
T ss_pred             CCCCCCEEEECCHHHHHHHHHHHHCCC--CC--CEEEEEEECCC-CCEEEEEEECCC-EEEECC---CCCCC-CCCCCCC
T ss_conf             678995699799999999999985555--47--65999871578-634899997399-799577---54321-2024689


Q ss_pred             -----------ECCCCCCCHHHHHHHH----HHHHHHHHHHC--CCCCCEEEEEECCCCEEEEECCCCCC-CCCHHHHHH
Q ss_conf             -----------0344558899999999----99999886515--43410245897288349982276543-320167886
Q gi|254780268|r  239 -----------EAHSPVISAQDRTEIG----ETCVKAMKKID--YRGAGTIEFLYENGQFYFIEMNTRLQ-VEHPVTEAI  300 (443)
Q Consensus       239 -----------eaPap~l~~~~~~~i~----~~A~~~~~~~g--~~g~~tvEFl~~~~~~yflEvN~Rlq-veh~vte~~  300 (443)
                                 .+|+|.+++++.+++.    +-.++..++-|  |+|+-=+.||++++.+++||.|.|+- -|--+.=..
T Consensus       218 D~GPNTGGMGaysp~p~~~~~~~~~~~~~I~~p~~~~l~~eg~~y~GvLy~GlMlt~~GpkVlEyN~RfGDPE~q~iLp~  297 (415)
T PRK13790        218 DEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNARFGDPEAQVLLSR  297 (415)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHH
T ss_conf             99999998756677744698999999987089999999855998489988779986898669998741189228889876


Q ss_pred             HCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCCCEEEEECCC---CCCEEEECC--CCCCCEE
Q ss_conf             32562011232221022222113333201245330245662-21111244215886689---984467776--0238770
Q gi|254780268|r  301 TGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPG---GLGIRMDSA--SYQGYTV  374 (443)
Q Consensus       301 tgvdlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri~aEdp-~~f~Ps~G~i~~~~~p~---~~gvRvDt~--~~~G~~i  374 (443)
                      -.-||++....++.|.+..+.-.+-..-+..+...-|-+.| +++     .|+-+....   ..|++.+.+  +..|.. 
T Consensus       298 L~~Dl~~~~~~~~~g~~~~~~~~~~~~v~vvlas~GYP~~~~kg~-----~I~g~~~~~~vf~ag~~~~~~~l~t~GGR-  371 (415)
T PRK13790        298 MESDLMQHIIDLDEGKRTEFKWKNESIVGVMLASKGYPDAYEKGH-----KVSGFDLNENYFVSGLKKQGDTFVTSGGR-  371 (415)
T ss_pred             CCCHHHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCCCCCCC-----CCCCCCCCCCEEEEEEEEECCEEEECCCC-
T ss_conf             055199999999759987157637836999964588997777997-----25577777619986678779989977692-


Q ss_pred             CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECCC
Q ss_conf             7776843389999559989999999987654088263
Q gi|254780268|r  375 PSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGI  411 (443)
Q Consensus       375 ~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv  411 (443)
                             +.-+++.|.|.++|.++..++++.....|.
T Consensus       372 -------VL~v~a~g~~l~eA~~~ay~~i~~I~~~g~  401 (415)
T PRK13790        372 -------VILAIGKGDNVQDAQRDAYEKVSQIQSDHL  401 (415)
T ss_pred             -------EEEEEEECCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             -------899999859999999999999852689999


No 45 
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.96  E-value=2.1e-25  Score=200.87  Aligned_cols=375  Identities=23%  Similarity=0.302  Sum_probs=253.8

Q ss_pred             EEEEECCCHHHHHHHHHHHHCC-CEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf             6866447099999999888809-659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r    4 KILIANRGEIALRILRACKELG-IPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY   82 (443)
Q Consensus         4 ~iLianrGeia~riira~~elG-i~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy   82 (443)
                      ||||.+.|-=---+.+++.+-. +..|-+..--...+.   .+ +.+.+       +..|++.|++.|+++++|.+.+|-
T Consensus         2 kVLviGsGgREHAia~kl~~s~~v~~v~~~PGN~G~~~---~~-~~~~i-------~~~d~~~l~~~a~~~~idlviiGP   70 (424)
T PRK00885          2 KVLVIGSGGREHALAWKLAQSPLVEKVYVAPGNAGTAL---EA-ENVAI-------DVTDIEALVAFAKEEGIDLTVVGP   70 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHH---CC-EEECC-------CCCCHHHHHHHHHHCCCCEEEECC
T ss_conf             79998888899999999973979898999289758874---17-36512-------857999999999984999999896


Q ss_pred             CHHHCCH---HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCC
Q ss_conf             3131097---6668898459216268989998721899887766422443324333455799987320033012200023
Q gi|254780268|r   83 GFLSENA---KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASA  159 (443)
Q Consensus        83 GfLsEn~---~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~  159 (443)
                          |.+   .++..++++|++.+||+.++.++.++|..+|++|++++|||+.+....+.+++.++.++.++|++|||..
T Consensus        71 ----E~pL~~Gi~D~l~~~gi~vfGP~k~aA~lE~SK~faK~~m~~~~IPTa~~~~f~~~~~A~~~l~~~~~p~VIKaDG  146 (424)
T PRK00885         71 ----EAPLVAGIVDAFRAAGLKIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYEVFTDAEEAKAYLDEQGAPIVVKADG  146 (424)
T ss_pred             ----CHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEECCC
T ss_conf             ----6788735799995069946894978988766379999999982989875488689999999998579988996176


Q ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCC--CCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             457821688875066899999875432125899--816884434201103315777347870236566542113562255
Q gi|254780268|r  160 GGGGRGMRIAYSENDLSEAIDQARSEALAAFGN--DAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIW  237 (443)
Q Consensus       160 gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd--~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkii  237 (443)
                      ..+|||+.++.+.+|..++++..+..  ..||+  ..|+||+|++|. |+.++++.||. +.++++.    .|. |.++-
T Consensus       147 LAaGKGV~V~~~~~ea~~al~~i~~~--~~fg~ag~~VvIEE~L~G~-E~S~~a~~DG~-~~~~lp~----aqD-hKR~~  217 (424)
T PRK00885        147 LAAGKGVVVAMTLEEAEAAVDDMLAG--NKFGDAGARVVIEEFLDGE-EASFFALVDGE-NVLPLPT----AQD-HKRAG  217 (424)
T ss_pred             CCCCCCEEEECCHHHHHHHHHHHHCC--CCCCCCCCEEEEEECCCCC-EEEEEEEECCC-CCCCCCC----CCC-CCCCC
T ss_conf             56777517637899999999998503--3234568728999705883-17999997899-7264702----114-75056


Q ss_pred             E------------ECCCCCCCHHHHHHHHH----HHHHHHHH--HCCCCCCEEEEEECCCCEEEEECCCCCC-CCCHHHH
Q ss_conf             4------------03445588999999999----99998865--1543410245897288349982276543-3201678
Q gi|254780268|r  238 E------------EAHSPVISAQDRTEIGE----TCVKAMKK--IDYRGAGTIEFLYENGQFYFIEMNTRLQ-VEHPVTE  298 (443)
Q Consensus       238 E------------eaPap~l~~~~~~~i~~----~A~~~~~~--~g~~g~~tvEFl~~~~~~yflEvN~Rlq-veh~vte  298 (443)
                      |            .+|+|.+++++.+++.+    -.++..+.  +.|+|+-=+.+|++++.+++||.|.|+- .|--+.=
T Consensus       218 dgD~GPNTGGMGa~sP~p~~~~~~~~~i~~~Ii~pt~~~l~~eg~~y~GiLy~GlMit~~GpkVlEyN~RfGDPE~qvll  297 (424)
T PRK00885        218 DGDTGPNTGGMGAYSPAPVVTEEVHDRVMEEIIEPTVKGMAAEGIPYTGVLYAGLMITKDGPKVIEFNCRFGDPETQVVL  297 (424)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEECCCCCHHHHHHH
T ss_conf             89999889988566788679999999999987999999998579847999877999867975589863134885888998


Q ss_pred             HHHCCCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHCCCCC-CCCCCCCCCC-EEEEECCCCCCEEEE-CCC--CCCC
Q ss_conf             86325620112322210222221133332-0124533024566-2211112442-158866899844677-760--2387
Q gi|254780268|r  299 AITGIDLVHEQIYVASENRLSVQQKDITF-SGHAIECRINAED-PENFIPNPGE-ITYFHAPGGLGIRMD-SAS--YQGY  372 (443)
Q Consensus       299 ~~tgvdlv~~~~~~a~g~~l~~~~~~i~~-~g~aie~Ri~aEd-p~~f~Ps~G~-i~~~~~p~~~gvRvD-t~~--~~G~  372 (443)
                      ..-.-||++.....+.|. |+.  .++.+ +++++-.=+-++. |.  .|..|. |+-... ..+++.+- +++  ..|.
T Consensus       298 p~L~~dl~~l~~~~~~g~-L~~--~~~~~~~~~~v~Vvlas~GYP~--~~~~g~~I~~~~~-~~~~~~ifhagt~~~~g~  371 (424)
T PRK00885        298 PRLKSDLVELLLAAAEGK-LDE--VPLEWDDRAAVGVVLAAKGYPG--DYRKGDVITGLDE-AEDGVKVFHAGTKLEDGK  371 (424)
T ss_pred             HHCCCCHHHHHHHHHCCC-CCC--CCCCCCCCCEEEEEEECCCCCC--CCCCCCCCCCCCC-CCCCCEEEEEEEEEECCE
T ss_conf             752361999999875398-554--5533347833799991698898--8889987048766-789989997103627998


Q ss_pred             EECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECC
Q ss_conf             70777684338999955998999999998765408826
Q gi|254780268|r  373 TVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDG  410 (443)
Q Consensus       373 ~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~G  410 (443)
                      .++.  -+=+--++++|.|.++|.++..+.++.....|
T Consensus       372 l~t~--GGRVl~vva~g~tl~~A~~~aY~~i~~I~~~~  407 (424)
T PRK00885        372 LVTN--GGRVLCVTALGDTLEEAQKRAYAALDKIDFDG  407 (424)
T ss_pred             EEEC--CCEEEEEEEECCCHHHHHHHHHHHHHCCCCCC
T ss_conf             9977--89489999987999999999999985267899


No 46 
>pfam01071 GARS_A Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02786).
Probab=99.96  E-value=8.7e-28  Score=217.74  Aligned_cols=174  Identities=25%  Similarity=0.366  Sum_probs=139.7

Q ss_pred             HCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             18998877664224433243334557999873200330122000234578216888750668999998754321258998
Q gi|254780268|r  114 GDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGND  193 (443)
Q Consensus       114 gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~  193 (443)
                      |||..+|++++++|||+++|....+.+++.++++++|||++|||++++||+||.+|++++|+..+++.+........+++
T Consensus         1 gdK~~~r~~l~~~gip~p~~~~~~~~~ea~~~~~~~g~P~VvKp~~~~gs~Gv~~v~~~~e~~~a~~~~~~~~~~~~~~~   80 (193)
T pfam01071         1 GSKSFAKDFMKRHGIPTAEYETFTDPEEAKSYIREAGFPAVVKADGLAAGKGVIVAMDNEEAIKAVDEILEQKKFGEAGE   80 (193)
T ss_pred             CCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             98899999999869899990787899999999997699889997434678837995458999999999985230357899


Q ss_pred             CEEEEEEEEEEEECCEEEEEECCCCCCC---------CCCCCCCCCCCCCEEEEECCCCCCCHHHHHH----HHHHHHHH
Q ss_conf             1688443420110331577734787023---------6566542113562255403445588999999----99999998
Q gi|254780268|r  194 AVYIEKYLENPRHIEVQIFGDGMGNAIH---------FGERDCSVQRRNQKIWEEAHSPVISAQDRTE----IGETCVKA  260 (443)
Q Consensus       194 ~vlvEk~i~~~rhiEvqVl~D~~g~~v~---------l~erdCSiQrr~qkiiEeaPap~l~~~~~~~----i~~~A~~~  260 (443)
                      +|+||+||+| .|++|+.+.|+. ++.+         +++.|+..+..++..  .+|+|.++++..++    +.+.+.+.
T Consensus        81 ~vlvEefl~G-~E~sv~~~~dg~-~~~~~~~~~~~k~~~~~d~g~~tg~~g~--~~p~~~~~~~~~~~~~~~i~~~~~~a  156 (193)
T pfam01071        81 PVVIEEFLEG-EEVSVLAFVDGK-TVKPLPPAQDHKRLGEGDTGPNTGGMGA--YSPAPVLTPELLERIKETIVEPTVDG  156 (193)
T ss_pred             CEEEEEECCC-CEEEEEEEEECC-EEEEEEEEEEEEEECCCCCCCCCCCCCE--ECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             7899872057-165578984099-7997142176445015788887799724--63475589899999999999999999


Q ss_pred             HHHHC--CCCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf             86515--43410245897288349982276543
Q gi|254780268|r  261 MKKID--YRGAGTIEFLYENGQFYFIEMNTRLQ  291 (443)
Q Consensus       261 ~~~~g--~~g~~tvEFl~~~~~~yflEvN~Rlq  291 (443)
                      +++.|  |.|+.++||+++++.+|+||||+|+.
T Consensus       157 l~~~g~~~~G~~h~e~~lt~~GP~vIEiN~RlG  189 (193)
T pfam01071       157 LRKEGIPYKGVLYAGLMLTKDGPKVLEFNCRFG  189 (193)
T ss_pred             HHHCCCCCEEEEEEEEEEECCCEEEEEEECCCC
T ss_conf             997499968899999999899579999939998


No 47 
>pfam02222 ATP-grasp ATP-grasp domain. This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.
Probab=99.96  E-value=3.3e-28  Score=220.70  Aligned_cols=162  Identities=19%  Similarity=0.311  Sum_probs=134.8

Q ss_pred             HHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCC-CCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf             642244332433345579998732003301220002345-7821688875066899999875432125899816884434
Q gi|254780268|r  123 AQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGG-GGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYL  201 (443)
Q Consensus       123 a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gG-GG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i  201 (443)
                      |+++||||+||....+.+++.++++++|||+||||..+| ||+|+++|++++||.++++.+        .++++++|+||
T Consensus         1 l~~~Giptp~~~~i~~~~d~~~~~~~iGyP~vvKp~~~G~~g~G~~~v~~~~el~~a~~~~--------~~~~~liE~~I   72 (171)
T pfam02222         1 LQKLGLPTPRFMAAESLEELIEAGQELGYPCVLKARRGGYDGKGQYVVRSEADIPQAWEEL--------GGGPVIVEEFV   72 (171)
T ss_pred             CHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHHC--------CCCCEEEEEEC
T ss_conf             9020989999549899999999999709978999611025898528988999999999855--------89957998604


Q ss_pred             EEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCC
Q ss_conf             2011033157773478702365665421135622554034455889999999999999886515434102458972-883
Q gi|254780268|r  202 ENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQ  280 (443)
Q Consensus       202 ~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~  280 (443)
                      +..+|+++.+++|.+|+++.+.-. ..+|+.+......+|++ +++++.+++++.|.++++++||.|+.+|||+++ +|+
T Consensus        73 ~~~~Ei~~~~~r~~~g~~~~~~~~-e~~~~~g~~~~~~~Pa~-~~~~~~~~i~~~a~ki~~aLg~~G~~~veff~~~dG~  150 (171)
T pfam02222        73 PFDKELSVLVVRSVDGETAFYPPV-ETIQEDGICHESVAPAR-VPDSQQAKAQEIAKKIVDELGGVGIFGVELFVLPDGD  150 (171)
T ss_pred             CCCEEEEEEEEECCCCCEEECCCE-EEEEECCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf             675799987434499989980354-66886781898742888-8989999999999999998397045999999939997


Q ss_pred             EEEEECCCCCCCCC
Q ss_conf             49982276543320
Q gi|254780268|r  281 FYFIEMNTRLQVEH  294 (443)
Q Consensus       281 ~yflEvN~Rlqveh  294 (443)
                      +||+|||||.+.+-
T Consensus       151 ~~v~EvnpR~h~sg  164 (171)
T pfam02222       151 LLVNELAPRPHNSG  164 (171)
T ss_pred             EEEEEECCCCCCCC
T ss_conf             99999649967757


No 48 
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.95  E-value=3.7e-25  Score=199.09  Aligned_cols=373  Identities=22%  Similarity=0.294  Sum_probs=250.2

Q ss_pred             EEEEECCCHHHHHHHHHHHHCC--CEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf             6866447099999999888809--65999858557718776758579991899853000698999999987099899458
Q gi|254780268|r    4 KILIANRGEIALRILRACKELG--IPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG   81 (443)
Q Consensus         4 ~iLianrGeia~riira~~elG--i~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG   81 (443)
                      ||||.+.|-=---|..++.+-+  .+.++-.-|+-...       +.+++....   . .|.+.|++.|++.++|.+..|
T Consensus         2 kVLviGsGGREHAiA~kla~s~~v~~~~~apgN~G~a~-------~~~~~~~~~---~-~~~~~lv~fA~~~~idl~vVG   70 (428)
T COG0151           2 KVLVIGSGGREHALAWKLAQSPLVLYVYVAPGNPGTAL-------EAYLVNIEI---D-TDHEALVAFAKEKNVDLVVVG   70 (428)
T ss_pred             EEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCH-------HHHHCCCCC---C-CCHHHHHHHHHHCCCCEEEEC
T ss_conf             49998688169999999840876249999379974211-------344336765---5-588999999997399989989


Q ss_pred             CCHHHCCHH---HHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCC
Q ss_conf             531310976---66889845921626898999872189988776642244332433345579998732003301220002
Q gi|254780268|r   82 YGFLSENAK---FAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKAS  158 (443)
Q Consensus        82 yGfLsEn~~---fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~  158 (443)
                      -    |.+-   ++..++++||+..||+.++.++.++|..+|++|.++|||++.+....+.++++++.++.|.|++|||.
T Consensus        71 P----E~pL~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~e~a~ayi~~~g~piVVKad  146 (428)
T COG0151          71 P----EAPLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDPEEAKAYIDEKGAPIVVKAD  146 (428)
T ss_pred             C----CHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHCCCCEEEECC
T ss_conf             7----178764468999877996238678898877539999999998199964111008989999999972998899345


Q ss_pred             CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCC--CEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             34578216888750668999998754321258998--1688443420110331577734787023656654211356225
Q gi|254780268|r  159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGND--AVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKI  236 (443)
Q Consensus       159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~--~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qki  236 (443)
                      ..-+|||+.++.+.+|..++....+..  ..||+.  +|+||+|++| -|+.++++.||. +++++.    +.|. |..+
T Consensus       147 GLaaGKGV~V~~~~eeA~~a~~~~l~~--~~fg~~g~~VVIEEfL~G-eE~S~~a~~DG~-~v~p~p----~aQD-hKra  217 (428)
T COG0151         147 GLAAGKGVIVAMTLEEAEAAVDEMLEG--NAFGSAGARVVIEEFLDG-EEFSLQAFVDGK-TVIPMP----TAQD-HKRA  217 (428)
T ss_pred             CCCCCCCEEECCCHHHHHHHHHHHHHH--CCCCCCCCCEEEEECCCC-EEEEEEEEECCC-EEEECC----CCCC-CCCC
T ss_conf             446789859827799999999999740--001478874899853346-179999997698-678785----3145-6433


Q ss_pred             EE------------ECCCCCCCHHHHHHHH----HHHHHHHHHHC--CCCCCEEEEEECCCCEEEEECCCCC-----CCC
Q ss_conf             54------------0344558899999999----99999886515--4341024589728834998227654-----332
Q gi|254780268|r  237 WE------------EAHSPVISAQDRTEIG----ETCVKAMKKID--YRGAGTIEFLYENGQFYFIEMNTRL-----QVE  293 (443)
Q Consensus       237 iE------------eaPap~l~~~~~~~i~----~~A~~~~~~~g--~~g~~tvEFl~~~~~~yflEvN~Rl-----qve  293 (443)
                      -|            .||+|.+++++.+++.    +-+++...+-|  |+|+--.+||++.+.+++||.|.|.     |+-
T Consensus       218 ~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~GPkViEfN~RFGDPEtq~v  297 (428)
T COG0151         218 YDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFNARFGDPETQVV  297 (428)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEECCCCCHHHHHH
T ss_conf             48998998888777779887998999999999999999999971898147887678982899679998566688357777


Q ss_pred             CHHHHHHHCCCCHHHHHHHHHCC--CCCCCCCCC-CCCHHHHHHHCCCCCCCCCCCCCCC-EEEEECCCCCCEEEE-CCC
Q ss_conf             01678863256201123222102--222211333-3201245330245662211112442-158866899844677-760
Q gi|254780268|r  294 HPVTEAITGIDLVHEQIYVASEN--RLSVQQKDI-TFSGHAIECRINAEDPENFIPNPGE-ITYFHAPGGLGIRMD-SAS  368 (443)
Q Consensus       294 h~vte~~tgvdlv~~~~~~a~g~--~l~~~~~~i-~~~g~aie~Ri~aEdp~~f~Ps~G~-i~~~~~p~~~gvRvD-t~~  368 (443)
                      -|.-    -=||++....++.|.  .......+- ..-+-.+.++-|-++     |..|. |+-.......++.+- .++
T Consensus       298 L~~l----~sdl~~~~~a~~~g~L~~~~~~~~~~~a~v~vvlA~~GYP~~-----~~kG~~I~~~~~~~~~~~~vf~Agv  368 (428)
T COG0151         298 LPLL----ESDLVELLLAAVDGKLDEVEILFWDKGAAVGVVLAAEGYPGD-----PEKGDVITGDEEAEEEGAKVFHAGV  368 (428)
T ss_pred             HHHC----CCCHHHHHHHHHHCCCCCCCHHHCCCCCEEEEEEECCCCCCC-----CCCCCEEECCHHHCCCCCEEEEEEE
T ss_conf             8760----260999999997187556442221578569999905888988-----8899887647564266838999667


Q ss_pred             C--CCC-EECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECCC
Q ss_conf             2--387-707776843389999559989999999987654088263
Q gi|254780268|r  369 Y--QGY-TVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGI  411 (443)
Q Consensus       369 ~--~G~-~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv  411 (443)
                      .  .|. .++.-  +=.--++..|.|.++|.+++.+++++..-.|.
T Consensus       369 ~~~~~~~lvt~G--gRvL~v~~~g~t~~eA~~~ay~~~~~i~~~g~  412 (428)
T COG0151         369 KLDDGGQLVTSG--GRVLAVVGTGDTLEEAQEKAYEALEKIHFDGL  412 (428)
T ss_pred             ECCCCCEEEECC--CEEEEEEECCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             215795599648--85899996589999999999999963577895


No 49 
>pfam07478 Dala_Dala_lig_C D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=99.95  E-value=1.5e-27  Score=216.02  Aligned_cols=162  Identities=27%  Similarity=0.373  Sum_probs=131.2

Q ss_pred             HHHHCCCCCCCCCCCCCH----HHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             664224433243334557----9998732003301220002345782168887506689999987543212589981688
Q gi|254780268|r  122 TAQQLGIPVVPGSGEVYP----HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYI  197 (443)
Q Consensus       122 ~a~~~GVP~~p~~~~~~~----~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlv  197 (443)
                      +++++||||+||......    ..+.++.+++|||+++||+++|+|+||.+|++.+||.++++.+.+.      +..++|
T Consensus         1 ll~~~Giptp~~~~v~~~~~~~~~~~~i~~~lg~P~vvKP~~~gss~Gv~~v~~~~el~~~i~~~~~~------~~~vlV   74 (201)
T pfam07478         1 LLKAAGIPVAPFIVLTREDWVLATIEKVEEKLGYPVFVKPANLGSSVGISKVTSREELQSAIEEAFQY------DNKVLI   74 (201)
T ss_pred             CHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHC------CCCEEE
T ss_conf             95565999999089825323435799999865998899989999866879995846879999998745------980799


Q ss_pred             EEEEEEEEECCEEEEEECCCCCCCCCCCCC--CCCCCCCEEEE-----ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             443420110331577734787023656654--21135622554-----03445588999999999999988651543410
Q gi|254780268|r  198 EKYLENPRHIEVQIFGDGMGNAIHFGERDC--SVQRRNQKIWE-----EAHSPVISAQDRTEIGETCVKAMKKIDYRGAG  270 (443)
Q Consensus       198 Ek~i~~~rhiEvqVl~D~~g~~v~l~erdC--SiQrr~qkiiE-----eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~  270 (443)
                      |+||+| ||++|+|++|+...+....|+..  ++.+.++|...     ..|+ .+++++.+++.++|.++++++|++|++
T Consensus        75 Eefi~G-~E~~v~vl~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~Pa-~l~~~~~~~i~~~A~~~~~aLg~~g~~  152 (201)
T pfam07478        75 EEAIEG-REIECAVLGNEDLEVSPVGEIRLSGGFYDYEAKYILSSAQIIVPA-DLPEEVEEQIQELALKAYKALGCRGLA  152 (201)
T ss_pred             EECCCC-CEEEEEEEECCCEEEEEEEEEECCCCEEEHHHEECCCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             985669-679999970898089875899437750267680136872376156-685999999999999999984887605


Q ss_pred             EEEEEEC-CCCEEEEECCCCCC
Q ss_conf             2458972-88349982276543
Q gi|254780268|r  271 TIEFLYE-NGQFYFIEMNTRLQ  291 (443)
Q Consensus       271 tvEFl~~-~~~~yflEvN~Rlq  291 (443)
                      +|||++| +|++|||||||+=.
T Consensus       153 rvD~~~d~~g~~~vlEvN~~Pg  174 (201)
T pfam07478       153 RIDFFLTEDGEIYLNEVNTMPG  174 (201)
T ss_pred             EEEEEECCCCCEEEEEECCCCC
T ss_conf             7999996899499999549799


No 50 
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.94  E-value=1.2e-23  Score=188.25  Aligned_cols=373  Identities=19%  Similarity=0.226  Sum_probs=234.8

Q ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEC-C--CHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEE
Q ss_conf             686644709999999988880-96599985-8--5577187767585799918998530006989999999870998994
Q gi|254780268|r    4 KILIANRGEIALRILRACKEL-GIPTVAVH-S--TADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH   79 (443)
Q Consensus         4 ~iLianrGeia~riira~~el-Gi~tv~v~-s--~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daih   79 (443)
                      ||||.+.|==---+..++.+- ....|-+. .  ||-........--+.+.+       +-.|++.|++.|+++++|.+.
T Consensus         2 kVLVIGsGGREHAla~kl~~Sp~v~~l~~aPGn~NpG~~~~a~~~~~~~~~~-------~~~d~~~i~~fa~~~~IDLvv   74 (485)
T PRK05784          2 KVLLVGDGAREHAIAEALAKSPKGYRIYALSSHLNPGIEEIVKKTGGEYFIG-------NPTSPGEVVKAAEEVSPDLVV   74 (485)
T ss_pred             EEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCCEECC-------CCCCHHHHHHHHHHCCCCEEE
T ss_conf             8999898889999999996098989899973898752567764258721204-------877999999999981999999


Q ss_pred             CCCCHHHCCH---HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf             5853131097---6668898459216268989998721899887766422443-32433345579998732003301220
Q gi|254780268|r   80 PGYGFLSENA---KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIP-VVPGSGEVYPHTAMPIAKEIGFPVLV  155 (443)
Q Consensus        80 PGyGfLsEn~---~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP-~~p~~~~~~~~ea~~~a~~iGyPvii  155 (443)
                      .|-    |.+   .++..++++||+.+||+.++.++.++|..+|++|+++||| ++.+....+.++++++.+..+ |++|
T Consensus        75 VGP----E~PL~~Gi~D~l~~~gi~vFGP~k~aA~LE~SK~FaK~fm~~~~IPtta~~~~f~~~~~A~~~l~~~~-piVI  149 (485)
T PRK05784         75 IGP----EEPLFAGVADALREEGFPVFGASSKCAEIEKSKVFARSLMWKYGIPGRLRYGVFKDVEEAYSFAEYGG-SVAI  149 (485)
T ss_pred             ECC----HHHHHHHHHHHHHHCCCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC-CEEE
T ss_conf             897----38876125899973799078968899414127889999999728996640121389999999986489-8499


Q ss_pred             HCCCCCCCCEEEEEEECH-----HHHHHHHHHHHHH---HCCCCC--CCEEEEEEEEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf             002345782168887506-----6899999875432---125899--816884434201103315777347870236566
Q gi|254780268|r  156 KASAGGGGRGMRIAYSEN-----DLSEAIDQARSEA---LAAFGN--DAVYIEKYLENPRHIEVQIFGDGMGNAIHFGER  225 (443)
Q Consensus       156 Kp~~gGGG~Gi~vv~~~~-----el~~a~~~a~~ea---~~~fgd--~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~er  225 (443)
                      ||...-+|||+.|+.+..     +..+++.....+.   ...||+  ..|+||+|++| .|+.+.++.||. ++++++. 
T Consensus       150 KaDGLAaGKGV~V~~~~~~~~~~~~~e~~~~~~~~~~~~~~~fg~ag~~VvIEEfL~G-~E~S~~a~~DG~-~~~~lp~-  226 (485)
T PRK05784        150 KPARQAGGKGVKVIYDLQAYLSNEKDEVLTKGAEEIKEQLASYRDVEEKILVEEKVDG-VEYTVQVLTDGE-SVFPLPP-  226 (485)
T ss_pred             ECCHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC-CEEEEEEEEECC-EEEECCC-
T ss_conf             2113306785188227277777789999999999999876543246870999964468-179999998299-6998922-


Q ss_pred             CCCCCCCCCEEEE------------ECCC----CCCCHHHHHHH---HHHHHHHH-HH--HCCCCCCEEEEEECCCCEEE
Q ss_conf             5421135622554------------0344----55889999999---99999988-65--15434102458972883499
Q gi|254780268|r  226 DCSVQRRNQKIWE------------EAHS----PVISAQDRTEI---GETCVKAM-KK--IDYRGAGTIEFLYENGQFYF  283 (443)
Q Consensus       226 dCSiQrr~qkiiE------------eaPa----p~l~~~~~~~i---~~~A~~~~-~~--~g~~g~~tvEFl~~~~~~yf  283 (443)
                         .|. |.++-|            .+|+    |.++++..+++   .+-.++.. +.  ..|+|+-=+.+|++++.+++
T Consensus       227 ---aQD-hKR~~dgD~GPNTGGMGAysP~~~~~P~l~~~~~~~~~~Ii~pti~~l~~e~g~~y~GvLY~GlMit~~GPkV  302 (485)
T PRK05784        227 ---VQD-NPHAYEYGIGPETGGMGSVSGPGELLPFIEEEEYEEAVEIVKATVEAIRKETGERYVGVLSGQMMLTALGPTV  302 (485)
T ss_pred             ---CCC-CCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEE
T ss_conf             ---205-7655689999899987006787667754479999999874899999998616997278887678861898489


Q ss_pred             EECCCCC-----CCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHCCCCC-CCCCCCCCCCEEEEEC
Q ss_conf             8227654-----3320167886325620112322210222221133332-0124533024566-2211112442158866
Q gi|254780268|r  284 IEMNTRL-----QVEHPVTEAITGIDLVHEQIYVASENRLSVQQKDITF-SGHAIECRINAED-PENFIPNPGEITYFHA  356 (443)
Q Consensus       284 lEvN~Rl-----qveh~vte~~tgvdlv~~~~~~a~g~~l~~~~~~i~~-~g~aie~Ri~aEd-p~~f~Ps~G~i~~~~~  356 (443)
                      ||.|.|.     ||=-|.    -.-||++.....+.|. |+  +.++.. ..+++-+=+-++. |.......|.......
T Consensus       303 lEfN~RfGDPEtQ~iLp~----L~sDl~~l~~a~~~g~-L~--~~~~~~~~~~av~VVlAs~GYP~~~~~~~g~~i~~~~  375 (485)
T PRK05784        303 IEYYSRLGDPEALNALYL----YEGDFYELFELAATGK-LH--KAERRFKEEPTVVKAIAPLGYPLRRDLATGRRIWVDW  375 (485)
T ss_pred             EEEECCCCCCHHHHHHHH----HHCCHHHHHHHHHCCC-CC--CCCEEECCCCEEEEEEECCCCCCCCCCCCCCEEECCC
T ss_conf             999688788338889987----4263999999998199-88--7870476895699999469999975678995652684


Q ss_pred             C--CCC-------CEEEECC--CCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECC
Q ss_conf             8--998-------4467776--0238770777684338999955998999999998765408826
Q gi|254780268|r  357 P--GGL-------GIRMDSA--SYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDG  410 (443)
Q Consensus       357 p--~~~-------gvRvDt~--~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~G  410 (443)
                      +  ...       |++.+.+  +..|..        +--+++.|.|.++|.++..++++...-.|
T Consensus       376 ~~~~~~~~~vfhagt~~~~g~l~t~GGR--------VL~v~a~g~tl~eAr~~aY~~i~~I~f~g  432 (485)
T PRK05784        376 DSIRREGCLVYFGSVEVEGGKLVTLGSR--------ALEILAPGDTYEEAYEKAERCASAVKGDG  432 (485)
T ss_pred             CCCCCCCCEEEEEEEEEECCEEEECCCC--------EEEEEEECCCHHHHHHHHHHHHHCCCCCC
T ss_conf             2223569789970438779989983692--------89999986989999999999985065999


No 51 
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.94  E-value=1.4e-23  Score=187.76  Aligned_cols=364  Identities=21%  Similarity=0.231  Sum_probs=234.1

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCE--EEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE
Q ss_conf             970686644709999999988880965--999858557718776758579991899853000698999999987099899
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGIP--TVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI   78 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi~--tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai   78 (443)
                      |--||||.+.|-=.--+..++.+-+-.  .+.-+.++-..    ..+...+.+       +-.|++.|++.|+++++|.+
T Consensus         1 m~MkVLViGsGGREHAla~kl~~s~~~~~~~~g~gn~g~~----~~~~~~~~~-------~~~d~~~i~~~a~~~~idLv   69 (435)
T PRK06395          1 MTMKVMLVGSGGREDAIARAIKRSGAILFSVIGHENPSIK----KLSKKYLFY-------DEKDYDLIEDFALKNNVDIV   69 (435)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCHHHH----HHCCCCCCC-------CCCCHHHHHHHHHHCCCCEE
T ss_conf             9877999887889999999985598844999899967877----623234656-------85699999999998499999


Q ss_pred             ECCCCHHHCCHH---HHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHCCCCHHH
Q ss_conf             458531310976---668898459216268989998721899887766422443-3243334557999873200330122
Q gi|254780268|r   79 HPGYGFLSENAK---FAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIP-VVPGSGEVYPHTAMPIAKEIGFPVL  154 (443)
Q Consensus        79 hPGyGfLsEn~~---fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP-~~p~~~~~~~~ea~~~a~~iGyPvi  154 (443)
                      .+|-    |.+-   ++..++++|++.+||+.++.++.++|..+|++|+++||| ++++....+..++..+..+.++|++
T Consensus        70 vvGP----E~pL~~Gi~D~l~~~gi~vFGP~k~aA~LE~SK~FaK~fm~~~~IP~ta~~~~~~~~~ea~~~~~~~~~piV  145 (435)
T PRK06395         70 FVGP----DPVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSEKDAARDYITSMKDVA  145 (435)
T ss_pred             EECC----CHHHHCCHHHHHHHCCCCEECCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf             9897----678866145599768994668428873263279889999998099856645323999999999997099848


Q ss_pred             HHCCCCCCCCEEEEEEEC-HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             000234578216888750-6689999987543212589981688443420110331577734787023656654211356
Q gi|254780268|r  155 VKASAGGGGRGMRIAYSE-NDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRN  233 (443)
Q Consensus       155 iKp~~gGGG~Gi~vv~~~-~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~  233 (443)
                      |||...-+|||+.++.+. +...++.+.+.. ...  .++.|+||+|+.| .|+.+.++.||. ++++++    +.| -|
T Consensus       146 IKadGLAaGKGV~V~~~~~~~~~ea~~~~~~-~~~--~~~~vvIEE~L~G-~E~S~~a~~dG~-~~~~lp----~aq-Dh  215 (435)
T PRK06395        146 VKPIGLTGGKGVKVTGEQLNSVDEAIRYAIE-ILD--RDGVVLIEKKMTG-EEFSLQAFSDGK-HLSFMP----IVQ-DY  215 (435)
T ss_pred             EEECCCCCCCCEEEECCCHHHHHHHHHHHHH-HHH--CCCEEEEEEEEEC-CEEEEEEEECCC-EEEECC----CCC-CC
T ss_conf             9734225789648955857789999999998-873--4885999999844-168999997699-558587----301-25


Q ss_pred             CEEEE------------ECCC----CCCCHHHHHHHHHHH---HHHHHHHC--CCCCCEEEEEECCCCEEEEECCCCC--
Q ss_conf             22554------------0344----558899999999999---99886515--4341024589728834998227654--
Q gi|254780268|r  234 QKIWE------------EAHS----PVISAQDRTEIGETC---VKAMKKID--YRGAGTIEFLYENGQFYFIEMNTRL--  290 (443)
Q Consensus       234 qkiiE------------eaPa----p~l~~~~~~~i~~~A---~~~~~~~g--~~g~~tvEFl~~~~~~yflEvN~Rl--  290 (443)
                      .++-|            .+|+    |.+++++.+++....   ++..+.-|  |+|+-=+.+|++++.+|+||.|.|+  
T Consensus       216 KR~~dgD~GPNTGGMGaysp~~~~~p~l~~~~~e~~~~Ii~pti~~l~~eg~~y~GvLy~GlMit~~gpkVlEyN~RfGD  295 (435)
T PRK06395        216 KRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTPNGVKVIEINARFAD  295 (435)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEEECCCC
T ss_conf             33447999999998745688888874327789999999999999999964997089987789850899648998620388


Q ss_pred             ---CCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHCCCCC-CCCCCCCCCCEEE--EECCCCC---
Q ss_conf             ---3320167886325620112322210222221133332-0124533024566-2211112442158--8668998---
Q gi|254780268|r  291 ---QVEHPVTEAITGIDLVHEQIYVASENRLSVQQKDITF-SGHAIECRINAED-PENFIPNPGEITY--FHAPGGL---  360 (443)
Q Consensus       291 ---qveh~vte~~tgvdlv~~~~~~a~g~~l~~~~~~i~~-~g~aie~Ri~aEd-p~~f~Ps~G~i~~--~~~p~~~---  360 (443)
                         ||=-|.    -.-||++....++.|. |+.   ++.. +.+++-+=+-+.. |.  .|..|.+.-  -..+.+.   
T Consensus       296 PE~QviLp~----L~~Dl~~ll~a~~~g~-L~~---~~~~~~~~~v~vvlas~GYP~--~~~kg~i~i~~~~~~~~~~vf  365 (435)
T PRK06395        296 PEGINVLYL----LKSDFVETLHQIYSGN-LNG---SIKFERKATVLKYIVPPGYGE--NPSPGRIKIDKTIFDSNSDVY  365 (435)
T ss_pred             CHHHHHHHH----HCCCHHHHHHHHHCCC-CCC---CCEEECCCEEEEEEECCCCCC--CCCCCCEECCCCCCCCCCEEE
T ss_conf             068888776----0052999999997088-887---754306987999997788887--780876325644457999899


Q ss_pred             --CEEEECC--CCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCE
Q ss_conf             --4467776--0238770777684338999955998999999998765408
Q gi|254780268|r  361 --GIRMDSA--SYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEII  407 (443)
Q Consensus       361 --gvRvDt~--~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~  407 (443)
                        |+..+.+  +..|..        +--+++.|.|.++|.+++.+.++...
T Consensus       366 hagt~~~~~~l~t~GGR--------Vl~v~a~g~sl~eA~~~aY~~i~~I~  408 (435)
T PRK06395        366 YASVSGTLNDVKTSGSR--------SLAIIAKGDSIPEASEKVDSDLNAVH  408 (435)
T ss_pred             EEEEEEECCEEEECCCC--------EEEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf             81677679939982384--------89999987999999999999984315


No 52 
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.93  E-value=1e-24  Score=196.00  Aligned_cols=248  Identities=23%  Similarity=0.319  Sum_probs=187.4

Q ss_pred             HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC-CCCHHHCCHHHH
Q ss_conf             9999998888096599985855771877675857999189985300069899999998709989945-853131097666
Q gi|254780268|r   14 ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP-GYGFLSENAKFA   92 (443)
Q Consensus        14 a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP-GyGfLsEn~~fa   92 (443)
                      |--++++.+..++....++...+...          ++....        .    -..-.++|-++| +-||.-|+....
T Consensus        23 a~~v~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~--------~----~~~~~~~~vvfp~lhG~~gEDg~iq   80 (317)
T COG1181          23 AKAVLRALKGFGYDVTPVDITEAGLW----------MLDKEV--------T----KRVLQKADVVFPVLHGPYGEDGTIQ   80 (317)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCCEE----------EECCCH--------H----HHHHCCCCEEEEECCCCCCCCCHHH
T ss_conf             89999987614871588732466327----------850310--------1----2220269877871558888870699


Q ss_pred             HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCC----HHHHHHHHHCCCCHHHHHCCCCCCCCEEEE
Q ss_conf             8898459216268989998721899887766422443324333455----799987320033012200023457821688
Q gi|254780268|r   93 EILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVY----PHTAMPIAKEIGFPVLVKASAGGGGRGMRI  168 (443)
Q Consensus        93 ~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~----~~ea~~~a~~iGyPviiKp~~gGGG~Gi~v  168 (443)
                      ..++..|++++|++..+-...+||..+|++++..|+|++++.....    .....+..+..+||++|||+..|++.|+..
T Consensus        81 g~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~  160 (317)
T COG1181          81 GLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRSP  160 (317)
T ss_pred             HHHHHHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEEE
T ss_conf             99997099876076445332350999988998678651235675334520478887741468878998587311367998


Q ss_pred             EEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCC-CCCC----------CCCCCCCCCCCCCEEE
Q ss_conf             8750668999998754321258998168844342011033157773478-7023----------6566542113562255
Q gi|254780268|r  169 AYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMG-NAIH----------FGERDCSVQRRNQKIW  237 (443)
Q Consensus       169 v~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g-~~v~----------l~erdCSiQrr~qkii  237 (443)
                      |++.+|+.++++.+...      |.++++|+|+. .|+|||.++++... .+..          ++.|+.+-..-. ...
T Consensus       161 v~~~~d~~~~~e~a~~~------d~~vl~e~~~~-~rei~v~vl~~~~~~~~l~~~eI~~~~~~fydye~Ky~~~g-g~~  232 (317)
T COG1181         161 VNVEGDLQSALELAFKY------DRDVLREQGIT-GREIEVGVLGNDYEEQALPLGEIPPKGEEFYDYEAKYLSTG-GAQ  232 (317)
T ss_pred             CCEECCHHHHHHHHHHH------CCCCEECCCCC-CCEEEEEECCCCCCCEECCCCEEECCCCEEEEEECCCCCCC-CCE
T ss_conf             83504369999999984------78512003776-65589863588655244476168169986986000145789-843


Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCEEEEECCCCCCC
Q ss_conf             40344558899999999999998865154341024589728--83499822765433
Q gi|254780268|r  238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYEN--GQFYFIEMNTRLQV  292 (443)
Q Consensus       238 EeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~--~~~yflEvN~Rlqv  292 (443)
                      ...|+ .+++++.++++++|+++++++||.|+++|+|++++  |++|+|||||.=+-
T Consensus       233 ~~~pa-~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~  288 (317)
T COG1181         233 YDIPA-GLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGM  288 (317)
T ss_pred             EECCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCCCC
T ss_conf             53788-999889999999999999860888758887999878998999987089987


No 53 
>TIGR00877 purD phosphoribosylamine--glycine ligase; InterPro: IPR000115   Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase)  catalyzes the second step in the de novo biosynthesis of purine:  ATP + 5-phosphoribosylamine + glycine = ADP + P_i + 5'-phosphoribosylglycinamide  In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART.; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process.
Probab=99.92  E-value=6.2e-23  Score=183.26  Aligned_cols=374  Identities=24%  Similarity=0.339  Sum_probs=244.5

Q ss_pred             EEEEECCCH--HHHHHHHHHH-HCCCEEEEEC-CCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEE
Q ss_conf             686644709--9999999888-8096599985-85577187767585799918998530006989999999870998994
Q gi|254780268|r    4 KILIANRGE--IALRILRACK-ELGIPTVAVH-STADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH   79 (443)
Q Consensus         4 ~iLianrGe--ia~riira~~-elGi~tv~v~-s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daih   79 (443)
                      ||||.+.|=  =|+  ..++. .--...+.+. -|+=+.-..   ..+.+.+...+   +--|++.|++.|++.++|.+.
T Consensus         2 kVLviG~GGREHAl--a~~l~qs~~v~~~~~apGN~Gta~~~---~~~~~~~~~~~---~~~d~~~~~~FA~~~~idL~~   73 (459)
T TIGR00877         2 KVLVIGNGGREHAL--AWKLAQSPLVKYVYVAPGNAGTARLA---KNKNVAIEITK---DVRDIEALVEFAKKKKIDLAV   73 (459)
T ss_pred             EEEEECCCHHHHHH--HHHHHCCCCCCEEEEECCCCCCCCCH---HHHHHCCCCCC---CHHHHHHHHHHHHHCCCCEEE
T ss_conf             58997487058999--99873271133667826898622012---54441145786---630089999999846975488


Q ss_pred             CCCCHHHCCH---HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHCCCCH--H
Q ss_conf             5853131097---6668898459216268989998721899887766422443-32433345579998732003301--2
Q gi|254780268|r   80 PGYGFLSENA---KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIP-VVPGSGEVYPHTAMPIAKEIGFP--V  153 (443)
Q Consensus        80 PGyGfLsEn~---~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP-~~p~~~~~~~~ea~~~a~~iGyP--v  153 (443)
                      .|-    |-+   -+...++++||+..||+-+|-++.++|..+|++|+++||| |+.|....+++++.++.++.|.|  +
T Consensus        74 iGP----E~PL~~G~vd~le~~Gi~~FGP~k~AA~LE~SK~FaK~fm~~~gIPGta~Y~~Ft~~eea~~y~~~~g~PA~~  149 (459)
T TIGR00877        74 IGP----EAPLVLGLVDALEEAGIPVFGPTKEAAQLEASKAFAKDFMKRYGIPGTAEYEVFTDPEEAKSYIQEKGAPAEI  149 (459)
T ss_pred             ECC----CCCHHHHHHHHHHHCCCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCE
T ss_conf             087----4101201477898679514568878864332878999999964898322210008989999999841889748


Q ss_pred             HHHCCCCCCCCEEEEE----EECHHHHHHHHHHHHHHHCCCCC--CCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCC
Q ss_conf             2000234578216888----75066899999875432125899--81688443420110331577734787023656654
Q gi|254780268|r  154 LVKASAGGGGRGMRIA----YSENDLSEAIDQARSEALAAFGN--DAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDC  227 (443)
Q Consensus       154 iiKp~~gGGG~Gi~vv----~~~~el~~a~~~a~~ea~~~fgd--~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdC  227 (443)
                      ||||.-.-+|||+.||    .+.+|-.++++..+..  +.||+  .+|+||+|++|. |+.++++.||+ ++++++    
T Consensus       150 VVKadGLAAGKGV~V~Ge~L~~~eEA~~~~~~~~~~--~~FG~a~~~VVIEEfL~G~-E~S~~~~~DG~-~v~Plp----  221 (459)
T TIGR00877       150 VVKADGLAAGKGVIVAGEQLKTNEEAIKAVEEILEQ--KAFGEAGERVVIEEFLEGE-EVSLLAFVDGK-TVIPLP----  221 (459)
T ss_pred             EEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHC--CCCCCCCCCEEEEECCCCC-CEEEEEEECCC-EEEECC----
T ss_conf             980566657986268476027478999999999854--7656668825896424880-08999997486-677054----


Q ss_pred             CCCCCCCEEEE-------------ECCCC---CCCHHHHHHH----HHHHHHHHHHHC--CCCCCEEEEEEC-CCC---E
Q ss_conf             21135622554-------------03445---5889999999----999999886515--434102458972-883---4
Q gi|254780268|r  228 SVQRRNQKIWE-------------EAHSP---VISAQDRTEI----GETCVKAMKKID--YRGAGTIEFLYE-NGQ---F  281 (443)
Q Consensus       228 SiQrr~qkiiE-------------eaPap---~l~~~~~~~i----~~~A~~~~~~~g--~~g~~tvEFl~~-~~~---~  281 (443)
                      ..|. |.-+.|             -||+|   .+++++.+++    .+-+++.+++=|  |+|+-=.+||+. +|+   +
T Consensus       222 ~aQD-hKR~~egD~~GpNTGGMGAYsP~phlL~~~~e~~~~~~~~I~~pt~~~l~~eG~~y~GvLYaglMl~~~G~~L~P  300 (459)
T TIGR00877       222 PAQD-HKRALEGDKKGPNTGGMGAYSPAPHLLVFTEEVEKRIAEEIVEPTVKALRKEGTPYKGVLYAGLMLTKEGGVLVP  300 (459)
T ss_pred             CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEE
T ss_conf             2157-650466888788557863302787844237178999987778999999985289724787413899768988644


Q ss_pred             EEEECCCCC-----CCCCHHHHHHHC--CCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHCCC------CCC-CCC--
Q ss_conf             998227654-----332016788632--5620112322210222221133332-01245330245------662-211--
Q gi|254780268|r  282 YFIEMNTRL-----QVEHPVTEAITG--IDLVHEQIYVASENRLSVQQKDITF-SGHAIECRINA------EDP-ENF--  344 (443)
Q Consensus       282 yflEvN~Rl-----qveh~vte~~tg--vdlv~~~~~~a~g~~l~~~~~~i~~-~g~aie~Ri~a------Edp-~~f--  344 (443)
                      ++||.|-|-     |.   |--.. -  =||++....++.|. |+...-+..+ +..|+-.=+=|      +-| .++  
T Consensus       301 kVlEfN~RFGDPEtq~---vL~lL-~dqsdL~e~~~a~~eg~-L~d~~~~~~~~~~~av~VvlA~GalkGR~~~~~GYP~  375 (459)
T TIGR00877       301 KVLEFNVRFGDPETQA---VLPLL-KDQSDLLEVCLAAVEGK-LDDSEVELRFDNRAAVTVVLASGALKGREYLKEGYPE  375 (459)
T ss_pred             EEEEECCCCCCHHHHH---HHHHH-CCCCCHHHHHHHHHCCC-CCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf             7889705278853444---64542-38888899999984566-6564112488178359999804753256778887788


Q ss_pred             CCCCC-CEEE-EECCCCC-------C--EEEECC--CCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECCC
Q ss_conf             11244-2158-8668998-------4--467776--02387707776843389999559989999999987654088263
Q gi|254780268|r  345 IPNPG-EITY-FHAPGGL-------G--IRMDSA--SYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGI  411 (443)
Q Consensus       345 ~Ps~G-~i~~-~~~p~~~-------g--vRvDt~--~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv  411 (443)
                      .|..| .|+- ...-...       |  +.-|.+  +.+|..        +.-|++.|.|-.+|.+++.++++...-+|.
T Consensus       376 ~~~~G~~I~Gd~~~~~~~~~~vf~Ag~~~~~~~g~~vt~GGR--------VL~V~a~g~~l~eA~~~Ay~a~~~i~f~G~  447 (459)
T TIGR00877       376 DYRKGDPITGDEEEAEAEGVKVFHAGTKTEQDNGKLVTNGGR--------VLAVVALGKDLEEARERAYEAVEKIKFEGM  447 (459)
T ss_pred             CCEEEEEECCCCHHHHCCCCEEEECCEEEEECCCEEEECCCE--------EEEEEECCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             860122652671897526978997332576208737971873--------999983262578999999998875137987


No 54 
>pfam08443 RimK RimK-like ATP-grasp domain. This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK.
Probab=99.91  E-value=2.7e-23  Score=185.86  Aligned_cols=179  Identities=20%  Similarity=0.299  Sum_probs=136.6

Q ss_pred             HHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC-CCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             2189988776642244332433345579998732003-301220002345782168887506689999987543212589
Q gi|254780268|r  113 MGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEI-GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFG  191 (443)
Q Consensus       113 ~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~i-GyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fg  191 (443)
                      +.||..+|++++++|||+|++....+.+++..+++++ |||+|+||++||||+|+.++++++++.++++.+...      
T Consensus         1 a~DK~~tk~ll~~~Gip~P~~~~~~~~~~~~~~~~~~~g~PvVvKP~~g~~g~gV~~v~~~~el~~~~~~~~~~------   74 (190)
T pfam08443         1 ARDKAKSHQLLAKHGIPVPNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAEDEQSLEQLLEAFKWL------   74 (190)
T ss_pred             CCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHC------
T ss_conf             97889999999987979799899889999999999808983899678899984558860637777888888634------


Q ss_pred             CCCEEEEEEEEE--EEECCEEEEEECCCCCCCCCCC---CCCCCCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             981688443420--1103315777347870236566---5421135-622554034455889999999999999886515
Q gi|254780268|r  192 NDAVYIEKYLEN--PRHIEVQIFGDGMGNAIHFGER---DCSVQRR-NQKIWEEAHSPVISAQDRTEIGETCVKAMKKID  265 (443)
Q Consensus       192 d~~vlvEk~i~~--~rhiEvqVl~D~~g~~v~l~er---dCSiQrr-~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g  265 (443)
                      ++++++|+||++  .|++.+.|+++.   ++...+|   +.....+ ++-.. ..|. .|+++    +.+.|+++++++|
T Consensus        75 ~~~vlvqefI~~~~~~dirv~vi~~~---~~~~~~~~~~~~~~~~n~~~g~~-~~~~-~l~~e----~~e~a~~a~~alg  145 (190)
T pfam08443        75 KNQILVQEFIAEAGNRDIRCLVVGGE---VVGAIHRQSNEGDFRTNLHRGGV-AEPY-QLSQE----EEEIAIKAAQAMG  145 (190)
T ss_pred             CCCEEEEEEEECCCCCEEEEEEECCC---EEEEEEEECCCCCCCCCCCCCCE-ECCC-CCCHH----HHHHHHHHHHHHC
T ss_conf             87377555660478854899996063---36789997466762143246862-4587-66889----9999999999738


Q ss_pred             CCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHH
Q ss_conf             43410245897288349982276543320167886325620112
Q gi|254780268|r  266 YRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQ  309 (443)
Q Consensus       266 ~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~  309 (443)
                      + |.+.|||+.+++.+|||||||+=+.  +-.|.+||+|+.+.-
T Consensus       146 l-~~~gVD~~~~~~g~~vlEvN~~Pg~--~~~~~~~g~~i~~~i  186 (190)
T pfam08443       146 L-DVLGVDIFRSKRGLLVCEVNSSPGL--KGIERTTGINIAIKL  186 (190)
T ss_pred             C-CEEEEEEEEECCCEEEEEECCCCCC--HHHHHHHCCCHHHHH
T ss_conf             9-9799999997996799996698460--478988794999999


No 55 
>PRK06849 hypothetical protein; Provisional
Probab=99.89  E-value=1.5e-20  Score=166.26  Aligned_cols=279  Identities=15%  Similarity=0.181  Sum_probs=199.6

Q ss_pred             EEEEEE-CCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCC-CCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf             068664-47099999999888809659998585577187767585799918998-5300069899999998709989945
Q gi|254780268|r    3 SKILIA-NRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPS-SKDSYLNIQQIVAACEVTGADAIHP   80 (443)
Q Consensus         3 ~~iLia-nrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~-~~~sYldi~~ii~~a~~~~~daihP   80 (443)
                      |+|||- .|=..|+-++|.+.+.|.++++..+.+=..+-+-+..++.|.++.+. ..+.|  +++|+++++++++|.+.|
T Consensus         5 ~tvLiTg~r~~~aL~laR~l~~~Gh~V~~aD~~~~~l~r~Sr~v~~~~~vP~P~~d~~~y--~~~Ll~Iv~~e~idl~IP   82 (387)
T PRK06849          5 KTVLITGARAPAALQLARSFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPKWDPNAY--IQALLSIVKRHNIDLLIP   82 (387)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCEEEEEECCCCCCCHHHH--HHHHHHHHHHHCCCEEEE
T ss_conf             779995886078999999998789979998489877542000011279869997898999--999999999838999997


Q ss_pred             CCCHHHCCHH-HHHHHH--HCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH-CCCCHHHHH
Q ss_conf             8531310976-668898--459216268989998721899887766422443324333455799987320-033012200
Q gi|254780268|r   81 GYGFLSENAK-FAEILE--DHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAK-EIGFPVLVK  156 (443)
Q Consensus        81 GyGfLsEn~~-fa~~~e--~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~-~iGyPviiK  156 (443)
                      -.    |..- +|+.-.  .....++.|+.+.+..+-||..+-++++++|+|+|......+.+++..+.. ..+.|.++|
T Consensus        83 ~~----eev~~~a~~~~~l~~~~~~~~~d~~~l~~LhdK~~F~~~a~~lGl~vP~T~~i~s~edv~~~~~~~~~~~~ilK  158 (387)
T PRK06849         83 TC----EEVFYLSLAKEELSAYCHVFHFDFDLLLMLHNKFEFIQQARSLGLSAPKTYLITDPEAIINFDFKTPHTPYVLK  158 (387)
T ss_pred             CC----CHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHCCCCCCEEEC
T ss_conf             77----68999986576447676376589999998644899999999749999988981899999865533668978982


Q ss_pred             CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             02345782168887506689999987543212589981688443420110331577734787023656654211356225
Q gi|254780268|r  157 ASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKI  236 (443)
Q Consensus       157 p~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qki  236 (443)
                      |.++.+|+++....+++++...         ....+.+.++.+||+|. ++=..-+.+ +|.+++...    -++..  -
T Consensus       159 Pv~~~~~~~v~~~~~~~~l~~l---------~~s~~~p~v~Qe~I~G~-~~ct~al~~-~Gkv~A~~~----y~~~~--~  221 (387)
T PRK06849        159 PIYSRFVRRVDLTKTKAAVLKL---------PISHKSPWIMQEFIPGQ-EYCSYSIVR-SGELRAHSC----YKPEF--T  221 (387)
T ss_pred             CCCCCCCCEEEECCCHHHHHCC---------CCCCCCCEEEEEECCCC-EEEEEEEEE-CCEEEEEEE----EECCE--E
T ss_conf             3766653336521597786158---------87667982899871696-758999978-999999998----20422--0


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHH
Q ss_conf             54034455889999999999999886515434102458972-883499822765433201678863256201123222
Q gi|254780268|r  237 WEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVA  313 (443)
Q Consensus       237 iEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a  313 (443)
                      +--+-+.....-...++.+...++++.++|.|...+||+.+ +|++|.||+|||+         .+||.|-..+-.+|
T Consensus       222 ~~~g~~v~fe~v~~p~i~e~v~~f~~~~~~tG~isFDFI~~~dG~~~~IECNPR~---------tSgi~lf~~~~~~a  290 (387)
T PRK06849        222 AGLGAQIAFQPINNPRIEEFVTHFVKELNYTGQISFDFIQTENGDAYPIECNPRT---------TSGLHLFDDHPGIL  290 (387)
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEECCCC---------CCCEEEECCCHHHH
T ss_conf             5884057889758889999999999847851589999999899988999845986---------66446515875589


No 56 
>pfam02655 ATP-grasp_3 ATP-grasp domain. No functional information or experimental verification of function is known in this family. This family appears to be an ATP-grasp domain (Pers. obs. A Bateman).
Probab=99.86  E-value=2.2e-21  Score=172.23  Aligned_cols=156  Identities=21%  Similarity=0.311  Sum_probs=114.1

Q ss_pred             HHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCC
Q ss_conf             21899887766422443324333455799987320033012200023457821688875066899999875432125899
Q gi|254780268|r  113 MGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGN  192 (443)
Q Consensus       113 ~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd  192 (443)
                      +.||..++++++++|||||++....+.+       .++||+++||.+|+||+|++++++.+++.+..             
T Consensus         1 A~DK~~t~~~l~~~gip~P~~~~~~~~~-------~~~~P~VvKP~~g~gs~Gv~~v~~~~~l~~~~-------------   60 (160)
T pfam02655         1 ASDKLKTYKALKNAGVPTPETLSAEEPT-------EEEKKYIVKPRDGCGGEGVRFVENGREDEEFI-------------   60 (160)
T ss_pred             CCCHHHHHHHHHHCCCCCCCEEECCCHH-------HCCCCEEEECCCCCCCCCEEEEECHHHHHHHC-------------
T ss_conf             9898999999998795999998657823-------55998999808989873189994899986532-------------


Q ss_pred             CCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHHHHHH-CCCCC
Q ss_conf             81688443420110331577734787023656654211356225--5403445588999999999999988651-54341
Q gi|254780268|r  193 DAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKI--WEEAHSPVISAQDRTEIGETCVKAMKKI-DYRGA  269 (443)
Q Consensus       193 ~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qki--iEeaPap~l~~~~~~~i~~~A~~~~~~~-g~~g~  269 (443)
                      +.+++|+||+| +|+.+.+++|+.+..+....|...-.......  -..+|++.   ....++.+++.++++++ ++.|.
T Consensus        61 ~~~liqe~i~G-~e~sv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~l~~~~G~  136 (160)
T pfam02655        61 ENVIIQEFIEG-EPLSVSLLSDGEKALPLSVNRQLIDNAGSGFVYAGNLTPSRT---ELKEELEELAEEVVEALPGLRGY  136 (160)
T ss_pred             CCEEEEEEEEC-CEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEECCC---CCHHHHHHHHHHHHHHHCCCCCE
T ss_conf             56588747944-423899999899999999857885147864210376301375---88899999999999984387564


Q ss_pred             CEEEEEECCCCEEEEECCCCCCC
Q ss_conf             02458972883499822765433
Q gi|254780268|r  270 GTIEFLYENGQFYFIEMNTRLQV  292 (443)
Q Consensus       270 ~tvEFl~~~~~~yflEvN~Rlqv  292 (443)
                      .+|||+++++++|++|||||++-
T Consensus       137 ~~vd~~~~~~~~~viEiNpR~s~  159 (160)
T pfam02655       137 VGVDLVLTDNGPYVIEVNPRITT  159 (160)
T ss_pred             EEEEEEEECCEEEEEEEECCCCC
T ss_conf             88899999990899999688778


No 57 
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.86  E-value=2.4e-19  Score=157.78  Aligned_cols=272  Identities=21%  Similarity=0.242  Sum_probs=186.4

Q ss_pred             EEEEECCCHH---HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf             6866447099---9999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r    4 KILIANRGEI---ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP   80 (443)
Q Consensus         4 ~iLianrGei---a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP   80 (443)
                      ||.|..|.+=   ..|+..+|++.|.+...+  ++......+....-.+         .|-+.       .-...|+|+|
T Consensus         2 ki~iLs~~~~~yst~RL~eaa~~rGh~v~vi--dp~~~~~~i~~~~~~v---------~~~g~-------~L~~~Davip   63 (300)
T PRK10446          2 KIAILSRDGTLYSCKRLREAAIQRGHLVEIL--DPLSCYMNINPAASSI---------HYKGR-------KLPHFDAVIP   63 (300)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCEEEEE--EHHHCEEEECCCCCEE---------EECCE-------ECCCCCEEEE
T ss_conf             7999936997607999999999879959996--1489189824898649---------98980-------8687888998


Q ss_pred             CCCHHH--CCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC-CCHHHHHC
Q ss_conf             853131--097666889845921626898999872189988776642244332433345579998732003-30122000
Q gi|254780268|r   81 GYGFLS--ENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEI-GFPVLVKA  157 (443)
Q Consensus        81 GyGfLs--En~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~i-GyPviiKp  157 (443)
                      --|.-.  ....+-+.+|..|+..+ -++++|+.+.||..+-+++.++|+|+|+.....+++++.++.+++ |+|+++||
T Consensus        64 R~g~~~t~~~~~vLr~lE~~Gv~vi-N~~~aI~~~~DKl~t~qlL~~~gip~P~T~~~~~~~~~~~~i~~~gg~PvViKp  142 (300)
T PRK10446         64 RIGTAITFYGTAALRQFEMLGSYPL-NESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKL  142 (300)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCEE-CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEE
T ss_conf             2677745589999999998899186-489999985769999999987597999889836999999999980899789996


Q ss_pred             CCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE--EECCEEEEEECCCCCCCCCCCCC---CCCC-
Q ss_conf             23457821688875066899999875432125899816884434201--10331577734787023656654---2113-
Q gi|254780268|r  158 SAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENP--RHIEVQIFGDGMGNAIHFGERDC---SVQR-  231 (443)
Q Consensus       158 ~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~--rhiEvqVl~D~~g~~v~l~erdC---SiQr-  231 (443)
                      .+|..|+|+.++++.+++...++.-...      +..+++.+||+.+  |.+-|-|+++   .++.-..|--   ++.. 
T Consensus       143 l~Gs~G~GV~l~e~~~~~~~i~~~~~~~------~~~~~iQeyI~~~~g~D~Rv~vvgg---~vvaam~R~~~~g~~rtN  213 (300)
T PRK10446        143 VEGTQGIGVVLAETRQAAESVIDAFRGL------NAHILVQEYIKEAQGCDIRCLVVGD---EVVAAIERRAKEGDFRSN  213 (300)
T ss_pred             CCCCCCCCEEEEECHHHHHHHHHHHHHC------CCCEEEEEECCCCCCCCEEEEEECC---EEHHHEEEECCCCCEEEE
T ss_conf             7898860369973789999999988622------8737752202555798679999998---624438997378834777


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHH
Q ss_conf             56225540344558899999999999998865154341024589728834998227654332016788632562011232
Q gi|254780268|r  232 RNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIY  311 (443)
Q Consensus       232 r~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~  311 (443)
                      -||-- .-.|. .++++.    .+.|.++++++|. ..+-|+.+.+++.+|++|||+-  ..--=.+.+||+|+....+.
T Consensus       214 ~~~Gg-~~~~~-~l~~e~----~~la~~a~~~lgl-~~~GVDii~~~~g~~v~EVN~~--Pg~~gi~~~tgvdiA~~Ii~  284 (300)
T PRK10446        214 LHRGG-AASVA-SITPQE----REIAIKAARTMAL-DVAGVDILRANRGPLVMEVNAS--PGLEGIEKTTGIDIAGKMIR  284 (300)
T ss_pred             EECCC-EEEEC-CCCHHH----HHHHHHHHHHHCC-CEEEEEEEEECCCCEEEEECCC--HHHHHHHHHHCCCHHHHHHH
T ss_conf             70397-76532-899999----9999999998699-6899999882899889999387--42788988759898999999


Q ss_pred             H
Q ss_conf             2
Q gi|254780268|r  312 V  312 (443)
Q Consensus       312 ~  312 (443)
                      -
T Consensus       285 ~  285 (300)
T PRK10446        285 W  285 (300)
T ss_pred             H
T ss_conf             9


No 58 
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.86  E-value=1.8e-19  Score=158.67  Aligned_cols=339  Identities=18%  Similarity=0.229  Sum_probs=221.5

Q ss_pred             EEEEEEC--CCHHHHHHHHHHHHCCCEEEEE--CCCHHHCCCCHHHCCEEEECCCCCCC---CHHCCHHHHHHHHHH--C
Q ss_conf             0686644--7099999999888809659998--58557718776758579991899853---000698999999987--0
Q gi|254780268|r    3 SKILIAN--RGEIALRILRACKELGIPTVAV--HSTADSGAMHVRLADESVCIGPPSSK---DSYLNIQQIVAACEV--T   73 (443)
Q Consensus         3 ~~iLian--rGeia~riira~~elGi~tv~v--~s~~D~~a~~~~~ADe~~~i~~~~~~---~sYldi~~ii~~a~~--~   73 (443)
                      .|+|+++  --.    +.-.|.++|+++..+  |.+.|-.    ..|+..+...++..-   ++ +|-..||+++.+  .
T Consensus        12 ~kiLviGvntR~----vveSA~klGf~V~sv~~y~~~Dl~----~~a~~~l~~r~~~~~~rfe~-~de~~li~~~~~~~~   82 (389)
T COG2232          12 CKILVIGVNTRP----VVESASKLGFEVYSVQYYDPADLP----GDAISYLRERPGELLGRFEN-LDEQKLIEAAEDLAE   82 (389)
T ss_pred             CEEEEEEECCHH----HHHHHHHCCEEEEEEEEECCCCCC----CCCCEEEEECCHHHCCCCCC-CCHHHHHHHHHHHHH
T ss_conf             438999623417----677877447189986753432366----42102788448545276558-898999999986445


Q ss_pred             CCCE-EECCCCHHHCCHHHHHHHHHCCCEEECCCHH-HHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf             9989-9458531310976668898459216268989-9987218998877664224433243334557999873200330
Q gi|254780268|r   74 GADA-IHPGYGFLSENAKFAEILEDHHIKFIGPSSE-HIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF  151 (443)
Q Consensus        74 ~~da-ihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~-ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGy  151 (443)
                      .+|+ +.|+=||-.++..     -+.+...+|.+|+ .+..+.+|.++.+.+..+|.|-++-.       ..+....--+
T Consensus        83 dvD~~ii~~sg~e~l~~~-----g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~-------~~e~~~~gek  150 (389)
T COG2232          83 DVDAPIIPFSGFEALRTS-----GELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEK-------KIEPLEEGEK  150 (389)
T ss_pred             HCCEEEEECCCCCCCCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHCCE
T ss_conf             324125403553212456-----7545644567827889998888865201010289997043-------2114440210


Q ss_pred             HHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             12200023457821688875066899999875432125899816884434201103315777347870236566542113
Q gi|254780268|r  152 PVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQR  231 (443)
Q Consensus       152 PviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQr  231 (443)
                      |+++||+.|+||. +.++.-.++..               -..++..+||+| +|+.|.++++|.. +..+.   |+-|-
T Consensus       151 t~IlKPv~GaGG~-~el~~~~Ee~~---------------~~~~i~Qefi~G-~p~Svs~is~g~~-a~~la---~N~Qi  209 (389)
T COG2232         151 TLILKPVSGAGGL-VELVKFDEEDP---------------PPGFIFQEFIEG-RPVSVSFISNGSD-ALTLA---VNDQI  209 (389)
T ss_pred             EEEEEECCCCCCE-EEECCCCCCCC---------------CCCEEHHHHCCC-CEEEEEEEECCCC-EEEEE---EEEEE
T ss_conf             1477302378860-13100433458---------------766003343178-4137999735862-38999---70022


Q ss_pred             CCCEEEEE---------CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHC
Q ss_conf             56225540---------344558899999999999998865154341024589728834998227654332016788632
Q gi|254780268|r  232 RNQKIWEE---------AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITG  302 (443)
Q Consensus       232 r~qkiiEe---------aPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tg  302 (443)
                      -.-+-.+.         .|.|..  +. +++.+.|.-+...+|.+|.--|+|++.+..+|++|||||+|=+--..|+.+|
T Consensus       210 I~~~~~~~~~f~Y~GNlTP~~~~--~~-ee~e~la~elV~~lgL~GsnGVDfvl~d~gpyViEVNPR~qGt~e~iE~s~g  286 (389)
T COG2232         210 IDGLRGEYSQFVYKGNLTPFPYE--EV-EEAERLAEELVEELGLVGSNGVDFVLNDKGPYVIEVNPRIQGTLECIERSSG  286 (389)
T ss_pred             ECCCCCCCCCCEECCCCCCCCCH--HH-HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf             14532334441012676777650--26-8999999999998423566661068606885799956854523788898617


Q ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCE
Q ss_conf             56201123222102222211333320124533024566221111244215886689984467776023877077768433
Q gi|254780268|r  303 IDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLI  382 (443)
Q Consensus       303 vdlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri~aEdp~~f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsml  382 (443)
                      ++|+++.+..-.|+    ..+.+.++++|+-.=+||-.- -+.|-.-....+..|.           .|..+..  +--+
T Consensus       287 iNl~~lHi~af~G~----LpEr~kpr~~a~krILyap~~-v~v~~l~~~~~~DiP~-----------~Gtviek--gePl  348 (389)
T COG2232         287 INLFRLHIQAFDGE----LPERPKPRGYACKRILYAPRT-VRVPILKLSWTHDIPR-----------PGTVIEK--GEPL  348 (389)
T ss_pred             CCHHHHHHHHHCCC----CCCCCCCCEEEEEEEEECCCE-EECCCCCCCCCCCCCC-----------CCCCCCC--CCCE
T ss_conf             77899999984575----767777653477678864523-6613102552113798-----------9822579--9830


Q ss_pred             EEEEEECCCHHHHHHHHHHHHH
Q ss_conf             8999955998999999998765
Q gi|254780268|r  383 AKLIVHGKNRKECMMRLNRALN  404 (443)
Q Consensus       383 aKiI~~g~~R~~Ai~~l~~aL~  404 (443)
                      +-+|+.+.+|+.|.+-+.|...
T Consensus       349 ~sviA~~nt~~~a~~~~er~~e  370 (389)
T COG2232         349 CSVIASSNTRSGAESMAERLAE  370 (389)
T ss_pred             EEEEECCCCHHHHHHHHHHHHH
T ss_conf             4655226877899999999999


No 59 
>KOG0237 consensus
Probab=99.84  E-value=5.2e-18  Score=148.32  Aligned_cols=384  Identities=20%  Similarity=0.235  Sum_probs=243.7

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHH-CCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEE
Q ss_conf             97068664470999999998888-09659998585577187767585799918998530006989999999870998994
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKE-LGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH   79 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~e-lGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daih   79 (443)
                      |.-++||++.|-=---+.-.+++ --+..|.+..---..+.    .|. -+++  ...-+--|.+++.+.|+++++..|.
T Consensus         1 ~~~~vLviGsGgREHal~wkL~qSp~v~~v~vaPGn~G~a~----~~~-~~~~--~~dI~~~d~~ala~f~~e~~I~lVv   73 (788)
T KOG0237           1 ERVNVLVIGSGGREHALAWKLKQSPKVKKVYVAPGNGGTAS----GDA-SKVP--NLDISVADFEALASFCKEHNINLVV   73 (788)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCC----CCC-CCCC--CCCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf             94379997588427688887632875553898369887456----751-2375--5655765599999999874621899


Q ss_pred             CCCCHHHCC---HHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC-HHHH
Q ss_conf             585313109---766688984592162689899987218998877664224433243334557999873200330-1220
Q gi|254780268|r   80 PGYGFLSEN---AKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF-PVLV  155 (443)
Q Consensus        80 PGyGfLsEn---~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGy-Pvii  155 (443)
                      ||-    |.   +.++..+..+||...||+.++.++.++|..+|.+|.++||||+.|....+++++..+.++..| +++|
T Consensus        74 vGP----E~PL~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~~~~~~Vi  149 (788)
T KOG0237          74 VGP----ELPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSATDKALVI  149 (788)
T ss_pred             ECC----CHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCEEE
T ss_conf             787----3265423566664058510174377777664178899889863998320264078799899998489856489


Q ss_pred             HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCC--CCCEEEEEEEEEEEECCEEEEE--ECCCCCCCCCCCCCCCCC
Q ss_conf             002345782168887506689999987543212589--9816884434201103315777--347870236566542113
Q gi|254780268|r  156 KASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFG--NDAVYIEKYLENPRHIEVQIFG--DGMGNAIHFGERDCSVQR  231 (443)
Q Consensus       156 Kp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fg--d~~vlvEk~i~~~rhiEvqVl~--D~~g~~v~l~erdCSiQr  231 (443)
                      |+..-..|||+-+..+.+|.-+|++..+..-  .||  ..+|.||++++|-   ||.+++  ||+ ++..+.    +-|.
T Consensus       150 KAdGLAAGKGViv~~~~~EA~eAv~sIl~~~--~fg~AG~tvViEE~LEGe---EvS~laftDG~-s~~~mp----~aQD  219 (788)
T KOG0237         150 KADGLAAGKGVIVAKSKEEAFEAVDSILVKK--VFGSAGKTVVIEELLEGE---EVSFLAFTDGY-SVRPLP----PAQD  219 (788)
T ss_pred             EECCCCCCCCEEEECCHHHHHHHHHHHHHHH--HHCCCCCEEEHHHHCCCC---EEEEEEEECCC-CCCCCC----CCCC
T ss_conf             6055245771574054799999999998544--413566458611230762---57899985573-023388----5100


Q ss_pred             CCCEEEE------------ECCCCCCCHHHHHHHHH----HHHHHHHHHC--CCCCCEEEEEECCCCEEEEECCCCC---
Q ss_conf             5622554------------03445588999999999----9999886515--4341024589728834998227654---
Q gi|254780268|r  232 RNQKIWE------------EAHSPVISAQDRTEIGE----TCVKAMKKID--YRGAGTIEFLYENGQFYFIEMNTRL---  290 (443)
Q Consensus       232 r~qkiiE------------eaPap~l~~~~~~~i~~----~A~~~~~~~g--~~g~~tvEFl~~~~~~yflEvN~Rl---  290 (443)
                       |..+.+            -+|+|.+++++.+.+++    -+++-.+.-|  |.|+----+|+.++.+-+||.|-|-   
T Consensus       220 -HKRl~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~~P~vLEfN~RFGDP  298 (788)
T KOG0237         220 -HKRLGDGDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKDGPKVLEFNVRFGDP  298 (788)
T ss_pred             -HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCEEEEECCCCCC
T ss_conf             -2553078999988886556547756989999999887667665787639962568765468835996079984013892


Q ss_pred             --CCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC----CCEEEEECCCCCCEEE
Q ss_conf             --3320167886325620112322210222221133332012453302456622111124----4215886689984467
Q gi|254780268|r  291 --QVEHPVTEAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNP----GEITYFHAPGGLGIRM  364 (443)
Q Consensus       291 --qveh~vte~~tgvdlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri~aEdp~~f~Ps~----G~i~~~~~p~~~gvRv  364 (443)
                        ||--|.-|-    ||.+....- ....|+-....++  -++.=.-+.|-   +=.|.+    -.|+.+..+..++.||
T Consensus       299 EtQv~l~lLes----DL~evi~a~-~~~~L~~~~i~w~--~~sa~~VV~as---~gYP~sy~KG~~It~~~~~~~~~~rV  368 (788)
T KOG0237         299 ETQVLLPLLES----DLAEVILAC-CNGRLDTVDIVWS--KKSAVTVVMAS---GGYPGSYTKGSIITGLPEADRPGTRV  368 (788)
T ss_pred             HHHHHHHHHHH----HHHHHHHHH-HHCCCCCCCCCCC--CCCEEEEEEEC---CCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             06565987876----799999998-6187455675411--46148999905---89898776876301676667876269


Q ss_pred             EC---CCCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEECC--CCCCHHHH
Q ss_conf             77---60238770777684338999955998999999998765408826--37788899
Q gi|254780268|r  365 DS---ASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDG--IKTTIPLF  418 (443)
Q Consensus       365 Dt---~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I~G--v~TN~~~l  418 (443)
                      -.   +++++..+.--  .-+--+.+.+++-.+|.++...+++.....|  ..|.|.|.
T Consensus       369 FHAGTs~~ss~vvTNG--GRVLsVTA~~~~L~sA~e~Ayk~v~~I~Fsg~~yRkDI~~r  425 (788)
T KOG0237         369 FHAGTSLDSSNVVTNG--GRVLSVTATGDDLESAAETAYKAVQVISFSGKFYRKDIAWR  425 (788)
T ss_pred             EECCCCCCCCCEEECC--CEEEEEEECCCHHHHHHHHHHHHHEEEEECCCCCCCHHHHH
T ss_conf             8625630245247538--65999971673099999999877618730552211034655


No 60 
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family; InterPro: IPR004666   Escherichia coli RimK adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6. Mutation of the Glu-Glu terminus to Lys-Glu blocked addition. S6 has the C-terminal sequence Glu-Glu in few species, suggesting the homolog of rimK may have a function other than S6 modification in those species. However, most species having a member of this protein subfamily do not have an S6 homolog ending in Glu-Glu.; GO: 0006464 protein modification process.
Probab=99.83  E-value=9.8e-19  Score=153.44  Aligned_cols=270  Identities=19%  Similarity=0.236  Sum_probs=189.4

Q ss_pred             HHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC----CHHHC
Q ss_conf             99999999888809659998585577187767585799918998530006989999999870998994585----31310
Q gi|254780268|r   12 EIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY----GFLSE   87 (443)
Q Consensus        12 eia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy----GfLsE   87 (443)
                      +.-.++..+|.+.|+..=.|++........ .=|.-.++.-+..  ++|        ---....|.+.+=.    -+-+-
T Consensus        18 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~-~P~~~~I~~~~~~--~~~--------~~~~~~~d~~~~R~~TPWv~~~~   86 (321)
T TIGR00768        18 YDEKMLKEAAEERGIDYKVVTPPEIVLTFN-QPAAFSIFYKEPR--KNK--------ELALAELDVVIVRIGTPWVSSFR   86 (321)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCHHHEECCC-CCCCCEEECCCCC--CCC--------HHHHCCCCEEEECCCCCCCCHHH
T ss_conf             899999999997179536760412200368-8851001114541--001--------02311788899838997511026


Q ss_pred             CHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC--------CHHHHHHHHHCCC---CHHHHH
Q ss_conf             97666889845921626898999872189988776642244332433345--------5799987320033---012200
Q gi|254780268|r   88 NAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV--------YPHTAMPIAKEIG---FPVLVK  156 (443)
Q Consensus        88 n~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~--------~~~ea~~~a~~iG---yPviiK  156 (443)
                      +...++.+|..|+..| -++++|..++||..+...+.++|||+|.+....        +.+++..+.+++|   ||+|+|
T Consensus        87 ~~~~~r~lE~~G~~~~-N~s~aI~~a~dK~~s~~~L~~~G~P~P~~~~~~PqnfDReW~~~~a~~~ie~~g~lEfP~V~K  165 (321)
T TIGR00768        87 GLAVLRALESLGVPVI-NSSQAILNAGDKVLSHQLLAKAGVPLPRTGVAGPQNFDREWSPEEALKLIEEIGQLEFPVVLK  165 (321)
T ss_pred             HHHHHHHHHHCCCEEC-CCHHHHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf             8899999985896310-706998621465899999995868987335736632243589889999998731764245871


Q ss_pred             CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE--EEEE--CCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             0234578216888750668999998754321258998168844342--0110--33157773478702365665421135
Q gi|254780268|r  157 ASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLE--NPRH--IEVQIFGDGMGNAIHFGERDCSVQRR  232 (443)
Q Consensus       157 p~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~--~~rh--iEvqVl~D~~g~~v~l~erdCSiQrr  232 (443)
                      |+.|..|+++..+++++.++..++.-....-  +.-...|+.+||+  .+.|  |-+-|+||.   ++.=      ++|+
T Consensus       166 p~~GS~G~~V~l~~D~~~~~~~~e~~~~~~~--~~~~~~~~QeyI~Pv~~~grDIR~fVvGd~---v~aA------~~R~  234 (321)
T TIGR00768       166 PVFGSWGRLVSLARDKQAAETLLEHFEQLNG--PQYKVFLVQEYIKPVKPGGRDIRVFVVGDE---VVAA------IYRI  234 (321)
T ss_pred             CCCCCCCCEEEEEECHHHHHHHHHHHHHHCC--CCCCEEEEEEEECCCCCCCCEEEEEEECCC---EEEE------EEEC
T ss_conf             7856354268985067899999999972188--332357887201132578931899998892---0133------3541


Q ss_pred             CC---------EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-----CEEEEECCCCCCCCCHHHH
Q ss_conf             62---------255403445588999999999999988651543410245897288-----3499822765433201678
Q gi|254780268|r  233 NQ---------KIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENG-----QFYFIEMNTRLQVEHPVTE  298 (443)
Q Consensus       233 ~q---------kiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~-----~~yflEvN~Rlqveh~vte  298 (443)
                      -+         +.=--.|+ .||++    +.+.|+|+++++|. +++-||++-++.     .+.|+|||+=.  |--=++
T Consensus       235 ~~~~~w~~N~a~GG~a~~~-~l~~e----~~~LA~ka~~a~g~-~v~giDlle~~~r~dw~GL~V~EVN~~~--~f~~~~  306 (321)
T TIGR00768       235 ITSGHWRTNLARGGKAEPC-SLTEE----IEELAIKAAKALGL-DVAGIDLLESKDRDDWGGLLVLEVNANP--EFKNSV  306 (321)
T ss_pred             CCCCCHHHHHHCCCCCCCC-CCCHH----HHHHHHHHHHHHCC-CEEEEEEEECCCCCCCCCCEEEEECCCC--CCCCCE
T ss_conf             7883024355438821245-25889----99999999999768-3489977662685425783799984997--700111


Q ss_pred             HHHCCCCHHHHHHH
Q ss_conf             86325620112322
Q gi|254780268|r  299 AITGIDLVHEQIYV  312 (443)
Q Consensus       299 ~~tgvdlv~~~~~~  312 (443)
                      ++||||+....++-
T Consensus       307 ~~tgvniA~~l~~y  320 (321)
T TIGR00768       307 KTTGVNIAGKLLDY  320 (321)
T ss_pred             EECCCCHHHHHHHH
T ss_conf             11167768999971


No 61 
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX; InterPro: IPR011870    The family of proteins found in this family include the characterised LysX from Thermus thermophilus  which is part of a well-organised lysine biosynthesis gene cluster . LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this family contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterised in Escherichia coli, and acts by ATP-dependent condensation of S6 with glutamate residues .; GO: 0003824 catalytic activity, 0005524 ATP binding, 0009085 lysine biosynthetic process.
Probab=99.83  E-value=2.8e-19  Score=157.30  Aligned_cols=247  Identities=23%  Similarity=0.314  Sum_probs=175.7

Q ss_pred             HHHHHHHCCCEEEEECCCHHHCCCCHHHC-CEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCC--HHHHH
Q ss_conf             99988880965999858557718776758-5799918998530006989999999870998994585313109--76668
Q gi|254780268|r   17 ILRACKELGIPTVAVHSTADSGAMHVRLA-DESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSEN--AKFAE   93 (443)
Q Consensus        17 iira~~elGi~tv~v~s~~D~~a~~~~~A-De~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn--~~fa~   93 (443)
                      ++..++++|+..=.||+..+..... ... ++.+          -+|+      +.+..+          |.+  .-.|.
T Consensus        15 L~e~l~~lg~~v~~i~~~~~~~~~~-d~~i~~~~----------~~dv------~i~R~V----------S~~R~L~~a~   67 (289)
T TIGR02144        15 LLEELEKLGLQVRVIYVPELALPFG-DLGIKELE----------DLDV------AIIRNV----------SQSRALYSAF   67 (289)
T ss_pred             HHHHHHHHCCCCEEEECCCEEECCC-CCCCCHHC----------CCCE------EEECHH----------HHHHHHHHHH
T ss_conf             9999987289732662034022078-85630003----------7556------898303----------4567999999


Q ss_pred             HHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECH
Q ss_conf             89845921626898999872189988776642244332433345579998732003301220002345782168887506
Q gi|254780268|r   94 ILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSEN  173 (443)
Q Consensus        94 ~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~  173 (443)
                      .+|+.|+.-| -++++|..||||+.+.-.+.++|||||.+....+.+.|+.+++++|||+++||+.|..||=+..+++.+
T Consensus        68 ~~E~~G~~~i-N~~~~i~~cgDK~~T~~~L~~~gvP~P~t~~a~d~~~A~~~~e~lGYPvV~KP~~GSWGRlV~~~~d~~  146 (289)
T TIGR02144        68 LLEAVGVPTI-NSSHAIIACGDKIFTTLKLAKAGVPTPRTYIAFDREAALKAAEELGYPVVLKPVIGSWGRLVSKIRDKD  146 (289)
T ss_pred             HHHHCCCEEE-CCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCHH
T ss_conf             9984897152-775898750461889999996678898358982868999999970898897088884378876403788


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE-EECCEEEEEECCCCCCC-------------CCCCCCCCCCCCCEEEEE
Q ss_conf             6899999875432125899816884434201-10331577734787023-------------656654211356225540
Q gi|254780268|r  174 DLSEAIDQARSEALAAFGNDAVYIEKYLENP-RHIEVQIFGDGMGNAIH-------------FGERDCSVQRRNQKIWEE  239 (443)
Q Consensus       174 el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~-rhiEvqVl~D~~g~~v~-------------l~erdCSiQrr~qkiiEe  239 (443)
                      +++..++.  +|....+.-+=-||.+||..| |-|-+-|+||..=.+++             +|.|-             
T Consensus       147 ~~~~llEh--~e~~~~~~~~~~y~QEfi~KPgRDIR~fViGd~~~~AIYR~~~P~~W~TNtArGG~A-------------  211 (289)
T TIGR02144       147 ELESLLEH--KEVLGGSQLKLYYVQEFINKPGRDIRVFVIGDEAIAAIYRYSEPNHWRTNTARGGKA-------------  211 (289)
T ss_pred             HHHHHHHH--HHHHCCCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHCCCCC-------------
T ss_conf             98899999--998679763337999887188960899999797316788338853025563058844-------------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-C-----CCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHH
Q ss_conf             34455889999999999999886515434102458972-8-----83499822765433201678863256201123222
Q gi|254780268|r  240 AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-N-----GQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVA  313 (443)
Q Consensus       240 aPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~-----~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a  313 (443)
                      .|++ |+++    +.+.|+|+++++| .++.-||-+=+ +     |.+.++|||+=-  |-==|-.+|||+..+..+..|
T Consensus       212 ~P~~-~~~e----~~~La~kA~~avg-g~~~~iDi~Es~~rqndW~GlLV~EVN~~~--EFKN~~rvTGvNva~~l~~ya  283 (289)
T TIGR02144       212 EPCK-IDEE----VEELAVKAAEAVG-GEVVGIDIVESKRRQNDWGGLLVNEVNGVP--EFKNTVRVTGVNVAEKLVEYA  283 (289)
T ss_pred             CCCC-CCHH----HHHHHHHHHHHHC-CEEEEEEEEECCCCCCCCCCEEEEEECCCC--CCCCCEEECCCCHHHHHHHHH
T ss_conf             7887-6876----8999999999978-827899886433445443786897356897--727857774745378999999


Q ss_pred             H
Q ss_conf             1
Q gi|254780268|r  314 S  314 (443)
Q Consensus       314 ~  314 (443)
                      .
T Consensus       284 v  284 (289)
T TIGR02144       284 V  284 (289)
T ss_pred             H
T ss_conf             9


No 62 
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2; InterPro: IPR005862    The formation of isosinate, a precursor of adenylate and guanylate, from 5-phosphoribosyl 1-pyrophosphate in the de novo purine biosynthesis pathway is basically composed of 10 steps of reactions . Phosphoribosylglycinamide formyltransferase 2 (2.1.2 from EC) is an alternative enzyme to phosphoribosylglycinamide formyltransferase that catalyzes the third step in the de novo purine biosynthesis pathway. ; GO: 0016742 hydroxymethyl- formyl- and related transferase activity, 0009113 purine base biosynthetic process.
Probab=99.80  E-value=3e-17  Score=142.85  Aligned_cols=378  Identities=17%  Similarity=0.221  Sum_probs=267.7

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf             68664470999999998888096599985855771877675857999189985300069899999998709989945853
Q gi|254780268|r    4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG   83 (443)
Q Consensus         4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG   83 (443)
                      ++|+.+.||+...+.-.++.+|++++++....+..  ..+.++..+.+       +.+|.+.+..+.++...|.+.|-.-
T Consensus         1 ~~~l~g~g~~g~~~~~~~~~lg~~~~~~d~~~~~p--~~~~~~~~~~~-------~~~d~~~~~~~~~~~~p~~~~p~~~   71 (407)
T TIGR01142         1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYADAP--ALQVAHRSYVI-------DLLDGDALRAVIEREKPDYIVPEIE   71 (407)
T ss_pred             CEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCC--HHHHHHHHHHE-------ECCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf             94661376533144444543471268733545762--13332111100-------0026789999987506741000244


Q ss_pred             HHHCCHHHHHHHHHCC---CEEECCCHHHHHHHHCHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCC
Q ss_conf             1310976668898459---216268989998721899887766-422443324333455799987320033012200023
Q gi|254780268|r   84 FLSENAKFAEILEDHH---IKFIGPSSEHIKIMGDKITAKKTA-QQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASA  159 (443)
Q Consensus        84 fLsEn~~fa~~~e~~G---i~fIGPs~~ai~~~gDK~~~k~~a-~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~  159 (443)
                      .++.  +-.-.+++.|   ...+ |+.++.....|+...|+++ +++|+|+.++....+.++....+.++|||+++||..
T Consensus        72 ~~~~--~~l~~~~~~gg~c~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~p~~~~p~~  148 (407)
T TIGR01142        72 AIAT--DALLELEAEGGECYTVV-PTARATKLTLNREGLRRLAAEELGLPTAPYEFADSLEELREAVEKIGFPCVVKPVL  148 (407)
T ss_pred             HHHH--HHHHHHHHCCCCEEEEE-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHH
T ss_conf             5546--66776652488246640-35202221210567787767763254220011101788999998607750001221


Q ss_pred             CCCCCEEEEEEECHHHHHHHHHHH-----HHHHCCCCCCCEEEEEEEEEEEECCEEEEE--ECCCCCCCC----CCCCCC
Q ss_conf             457821688875066899999875-----432125899816884434201103315777--347870236----566542
Q gi|254780268|r  160 GGGGRGMRIAYSENDLSEAIDQAR-----SEALAAFGNDAVYIEKYLENPRHIEVQIFG--DGMGNAIHF----GERDCS  228 (443)
Q Consensus       160 gGGG~Gi~vv~~~~el~~a~~~a~-----~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~--D~~g~~v~l----~erdCS  228 (443)
                      +.+|+|..++++++++..+|+.+.     ..+  ..+.+++++|.|++..-++..-.++  |+.|...++    |.++-.
T Consensus       149 ~~~g~g~~~~~~~~~~~~~w~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~g~~~~~  226 (407)
T TIGR01142       149 SSSGKGQSVVRGPEDLEKAWEYAKGHQVQEGG--RGGAGRVIVEEFIDFDYEITLLTVRAVDGNGPLTTFCAPIGHRQED  226 (407)
T ss_pred             CCCCCCCEEECCHHHHHHHHHHHHCCCCCCCC--CCCCCCEEEEECCCCHHHHHHHEEEECCCCCCEEEECCCCCCCCCC
T ss_conf             14666530004734567887665043101134--5555624552001310211000000027777501101322430015


Q ss_pred             CCCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHH--CCCC
Q ss_conf             11356225540-34455889999999999999886515434102458972883499822765433201678863--2562
Q gi|254780268|r  229 VQRRNQKIWEE-AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAIT--GIDL  305 (443)
Q Consensus       229 iQrr~qkiiEe-aPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~t--gvdl  305 (443)
                      -  .   ..|. .|. .++.....+....+.++..++|-.|+.-+|+++..+++||.|+.||-.-.--+|-...  ++.-
T Consensus       227 g--~---~~~~w~p~-~~~~~~~~~~~~~~~~~~~~lgg~g~~g~~~~~~g~~~~~~~~~p~p~~~g~~~~~~~pp~~~~  300 (407)
T TIGR01142       227 G--D---YHESWQPQ-ELSEKALEEAKRIAKRVTDALGGYGLFGVELFVKGDEVWFSEVSPRPHDTGLVTLISQPPDLSE  300 (407)
T ss_pred             C--C---CHHCCCCH-HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEECCCCCCCCCCEEEEEECCCCCHH
T ss_conf             5--4---00014621-2217889999999988887634664001445651661354204667666513787406887204


Q ss_pred             HHHHHHHHHCCCCC--------CCCCCCCCCHHHHHHHCCCCCCC-CCCCCCCCE-EEEECCCCCCEEEECCCCCCCEEC
Q ss_conf             01123222102222--------21133332012453302456622-111124421-588668998446777602387707
Q gi|254780268|r  306 VHEQIYVASENRLS--------VQQKDITFSGHAIECRINAEDPE-NFIPNPGEI-TYFHAPGGLGIRMDSASYQGYTVP  375 (443)
Q Consensus       306 v~~~~~~a~g~~l~--------~~~~~i~~~g~aie~Ri~aEdp~-~f~Ps~G~i-~~~~~p~~~gvRvDt~~~~G~~i~  375 (443)
                      ....++...|.|++        ....-.+...+.+.......++. +..|....+ ..+..|. ..+|+-+.-.      
T Consensus       301 ~~~~~~~~~g~p~~g~w~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~pp~~~~~~~~~~~~-~~~~~~g~p~------  373 (407)
T TIGR01142       301 FALHLRAILGLPVPGEWVDGYRLIKQLGPGASAVILADGEGGKLAFGGAPPADALEDALGVPD-TDVRLFGKPE------  373 (407)
T ss_pred             HHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHCHHCCCCCCCCCCCCHHHHHHHHCCCC-CCEEEECCCC------
T ss_conf             665445542366675100111222211541001220000001122356773345565431554-3056621643------


Q ss_pred             CCCCCCEEEEEEECCCHHHHHHHHHHHHHHCEE
Q ss_conf             776843389999559989999999987654088
Q gi|254780268|r  376 SYYDSLIAKLIVHGKNRKECMMRLNRALNEIII  408 (443)
Q Consensus       376 ~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~I  408 (443)
                      ..-..-++-.++++++-+.+..+...+.....+
T Consensus       374 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~  406 (407)
T TIGR01142       374 AKGGRRLGVALATAESVEAARERAEEVAHAVKV  406 (407)
T ss_pred             CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf             333321012220220368889888887765227


No 63 
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.74  E-value=5.6e-16  Score=133.86  Aligned_cols=274  Identities=19%  Similarity=0.283  Sum_probs=170.1

Q ss_pred             HHHHHHHHHCCCEEEEECCCHHHC-CCCHHHCCEE-EECCCCCCCCHHCCHHHH--HHHHHHCCCCEEECC--CCHHHCC
Q ss_conf             999998888096599985855771-8776758579-991899853000698999--999987099899458--5313109
Q gi|254780268|r   15 LRILRACKELGIPTVAVHSTADSG-AMHVRLADES-VCIGPPSSKDSYLNIQQI--VAACEVTGADAIHPG--YGFLSEN   88 (443)
Q Consensus        15 ~riira~~elGi~tv~v~s~~D~~-a~~~~~ADe~-~~i~~~~~~~sYldi~~i--i~~a~~~~~daihPG--yGfLsEn   88 (443)
                      .+.+++++..|++-..++ +.+.. ....-.|-.. ..+...    -.+..+.+  .......+.|++++=  ..|-- .
T Consensus        20 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~~~-~   93 (318)
T COG0189          20 FALMEAAQKRGHELAILD-DGDLSLRKGEIKALARLVEVGEV----IGLHYELIEEEDLSLLDELDVIIMRKDPPFDF-A   93 (318)
T ss_pred             HHHHHHHHHHCCEEEEEC-CCCCCCCCCHHHHHHHHHHHHHH----CCCCCCCCCCCCHHHCCCCCEEEECCCCHHHH-H
T ss_conf             999887786073489971-65311451336888866532210----01012433310022203672899737860456-8


Q ss_pred             HHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH-HHCCCCHHHHHCCCCCCCCEEE
Q ss_conf             766688984592162689899987218998877664224433243334557999873-2003301220002345782168
Q gi|254780268|r   89 AKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPI-AKEIGFPVLVKASAGGGGRGMR  167 (443)
Q Consensus        89 ~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~-a~~iGyPviiKp~~gGGG~Gi~  167 (443)
                      ..|++.+|..|..+| .+|.+|..+.||..+-+++.+.|+|+|+.....+.++...+ ++.+|||+|+||.+|.+|+|+.
T Consensus        94 ~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~  172 (318)
T COG0189          94 TRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHLGFPVVLKPLDGSGGRGVF  172 (318)
T ss_pred             HHHHHHHHHCCCEEE-CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCEE
T ss_conf             999999987498687-8879987635579999999965999998689658478899999746898899647888866559


Q ss_pred             EEEECH-HHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEE-ECCEEEEEECCCCCCCCCCCCCCCCCCCCE--------EE
Q ss_conf             887506-68999998754321258998168844342011-033157773478702365665421135622--------55
Q gi|254780268|r  168 IAYSEN-DLSEAIDQARSEALAAFGNDAVYIEKYLENPR-HIEVQIFGDGMGNAIHFGERDCSVQRRNQK--------IW  237 (443)
Q Consensus       168 vv~~~~-el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~r-hiEvqVl~D~~g~~v~l~erdCSiQrr~qk--------ii  237 (443)
                      .|.+.+ ++.+..+...+..     ...+++.+||+.++ .+-.-+++|+  .++..+    .+||.-+.        .-
T Consensus       173 ~v~~~d~~l~~~~e~~~~~~-----~~~~ivQeyi~~~~~~~rrivv~~~--~~~~~y----~~~R~~~~~~~R~N~a~G  241 (318)
T COG0189         173 LVEDADPELLSLLETLTQEG-----RKLIIVQEYIPKAKRDDRRVLVGGG--EVVAIY----ALARIPASGDFRSNLARG  241 (318)
T ss_pred             EECCCCHHHHHHHHHHHCCC-----CCEEEEECCCCCCCCCEEEEEEECC--EEEEEE----EEECCCCCCCCEEECCCC
T ss_conf             94377656999999863455-----6429862034767787399999899--998987----120047777520101157


Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHH
Q ss_conf             403445588999999999999988651543410245897288349982276543320167886325620112322
Q gi|254780268|r  238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYV  312 (443)
Q Consensus       238 EeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~  312 (443)
                      -.+.+..|+++++    +.|++++.++| .++.-|+++.+++.+|++|||.-=.=-+ -.+.++|++......+.
T Consensus       242 g~~e~~~l~~e~~----elA~kaa~~lG-l~~~GVDiie~~~g~~V~EVN~sP~~~~-~i~~~~g~~~~~~~~~~  310 (318)
T COG0189         242 GRAEPCELTEEEE----ELAVKAAPALG-LGLVGVDIIEDKDGLYVTEVNVSPTGKG-EIERVTGVNIAGLIIDA  310 (318)
T ss_pred             CEECCCCCCHHHH----HHHHHHHHHHC-CCEEEEEEEEECCCEEEEEEECCCCCCC-CHHHCCCCCHHHHHHHH
T ss_conf             5204536999999----99999999748-9479999997089629999868965235-21430697679999999


No 64 
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.73  E-value=1.2e-16  Score=138.59  Aligned_cols=261  Identities=22%  Similarity=0.351  Sum_probs=168.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHH--HHHHHHHCCCCE--EE
Q ss_conf             68664470999999998888096599985855771877675857999189985300069899--999998709989--94
Q gi|254780268|r    4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQ--IVAACEVTGADA--IH   79 (443)
Q Consensus         4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~--ii~~a~~~~~da--ih   79 (443)
                      +||--|.+-|++     -.+||.+-+-+++=.-.|+-     .|..++++.+..  -||..+  |++-|+..|+..  +-
T Consensus       195 SV~hdN~~Ai~l-----Y~kLgF~~~p~f~vKrkn~i-----Ne~lf~gp~~~~--~lnpya~ii~~ea~rrgi~vev~d  262 (547)
T TIGR03103       195 SVMHDNEQAIAL-----YEKLGFRRIPVFALKRKNAI-----NERLFSGPAPEA--DLNPYARIIVDEARRRGIEVEVLD  262 (547)
T ss_pred             EECCCCHHHHHH-----HHHHCCEECCEEEEECCCCC-----CCCCCCCCCCCC--CCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf             010486889999-----99719755645788605756-----743246998644--578146887768986686489863


Q ss_pred             CCCCHHH--CCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHC
Q ss_conf             5853131--09766688984592162689899987218998877664224433243334557999873200330122000
Q gi|254780268|r   80 PGYGFLS--ENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKA  157 (443)
Q Consensus        80 PGyGfLs--En~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp  157 (443)
                      +-.||+.  -... .-.|.+. +.=+ +|+=++..+.||..+|+++.++|+|+|.+....+.+++.+|++++| ||+|||
T Consensus       263 ~~~g~f~l~~ggr-~i~cres-lSel-TSAvAms~c~DK~lT~rll~~AG~~VP~~~~~~~~~~~~~fl~~~G-~VVVKP  338 (547)
T TIGR03103       263 AEGGLFRLSLGGR-SIRCRES-LSEL-TSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNGEAVEAFLAEHG-AVVVKP  338 (547)
T ss_pred             CCCCEEEEEECCE-EEEEECH-HHHH-HHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC-CEEECC
T ss_conf             8888589712890-6886120-2578-8899988740499999999973998999745699899999998739-999776


Q ss_pred             CCCCCCCEEEE-EEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC----------------EEEEEECCCCCC
Q ss_conf             23457821688-8750668999998754321258998168844342011033----------------157773478702
Q gi|254780268|r  158 SAGGGGRGMRI-AYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE----------------VQIFGDGMGNAI  220 (443)
Q Consensus       158 ~~gGGG~Gi~v-v~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE----------------vqVl~D~~g~~v  220 (443)
                      .+|--|||+.+ +.+++++..||..|..++      +.|+||+|++|. ++-                -+|+|||..++-
T Consensus       339 ~dGnqGrGVtvnl~t~eev~~A~~~A~~~~------~~VIVE~fi~G~-D~RlLVIggkVVAAA~R~Pa~VvGDG~sTI~  411 (547)
T TIGR03103       339 VRGEQGKGISVDVRTPDDLEAAIAKARQFC------DRVLLERYVPGE-DLRLVVIDFEVVAAAVRRPPEVIGDGRSSIR  411 (547)
T ss_pred             CCCCCCCCEEECCCCHHHHHHHHHHHHHHC------CCEEEEEEECCC-CEEEEEECCEEEEEECCCCCEEEECCHHHHH
T ss_conf             878888615872599999999999999759------957999840697-1699999999999981479679848662099


Q ss_pred             CCCCCCCCCCCC-----CCEEEE---E--------------CC-------------------CCCCCHHHHHHHHHHHHH
Q ss_conf             365665421135-----622554---0--------------34-------------------455889999999999999
Q gi|254780268|r  221 HFGERDCSVQRR-----NQKIWE---E--------------AH-------------------SPVISAQDRTEIGETCVK  259 (443)
Q Consensus       221 ~l~erdCSiQrr-----~qkiiE---e--------------aP-------------------ap~l~~~~~~~i~~~A~~  259 (443)
                      -|-+.+.  +|+     +...|.   +              -|                   +-..++++.-.+.+.|.+
T Consensus       412 eLIe~qn--rrr~~~~g~esrI~lD~~t~~~L~~qG~tldSVp~~Ge~V~LR~nANLSTGGtaiDVTD~VHPe~~~~A~~  489 (547)
T TIGR03103       412 DLIEKQS--RRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAER  489 (547)
T ss_pred             HHHHHHC--CCCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHH
T ss_conf             9984305--77556789975334699999999984998122588899999942660268985161456769899999999


Q ss_pred             HHHHHCCCCCCEEEEEEC---CCCEEEEECCCCC
Q ss_conf             886515434102458972---8834998227654
Q gi|254780268|r  260 AMKKIDYRGAGTIEFLYE---NGQFYFIEMNTRL  290 (443)
Q Consensus       260 ~~~~~g~~g~~tvEFl~~---~~~~yflEvN~Rl  290 (443)
                      +++++|.. ++-|+|++.   .-++.|+|+|.|-
T Consensus       490 AAraIGLd-IaGIDliv~DIs~P~~vIIEvNa~P  522 (547)
T TIGR03103       490 AARALDIP-VVGIDFLVPDVTGPDYVIIEANERP  522 (547)
T ss_pred             HHHHHCCC-EEEEEEEECCCCCCCEEEEEECCCC
T ss_conf             99973998-5568998426899981899977896


No 65 
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810    Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process.
Probab=99.71  E-value=1.5e-17  Score=144.93  Aligned_cols=156  Identities=26%  Similarity=0.444  Sum_probs=116.5

Q ss_pred             CEEEECCCCCCCCHHCCHHHHHHHHHHCCCC--------EEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHH
Q ss_conf             5799918998530006989999999870998--------99458531310976668898459216268989998721899
Q gi|254780268|r   46 DESVCIGPPSSKDSYLNIQQIVAACEVTGAD--------AIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKI  117 (443)
Q Consensus        46 De~~~i~~~~~~~sYldi~~ii~~a~~~~~d--------aihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~  117 (443)
                      ++..+|||.        -..|++.|.+.++=        .|-=|||--      .+..+. -++= -+|.=+.+++.||.
T Consensus       157 ~~~~~LGPS--------T~~Iv~eA~~R~IP~~rL~~g~~vqlGYG~~------qkri~a-t~td-~Ts~iav~iA~DK~  220 (876)
T TIGR02068       157 VADASLGPS--------TAAIVKEAEKRGIPYMRLSAGSLVQLGYGSK------QKRIQA-TETD-RTSAIAVEIACDKD  220 (876)
T ss_pred             HHHCCCCCC--------HHHHHHHHHHCCCCEEEECCCCEEECCCCCC------CEEEEE-ECCC-CCCEEEHHHHCCHH
T ss_conf             973367987--------7899999973789868733764456057754------303432-0025-76501012223637


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC-CHHHHHCCCCCCCCEEEE-EEECHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf             887766422443324333455799987320033-012200023457821688-875066899999875432125899816
Q gi|254780268|r  118 TAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIG-FPVLVKASAGGGGRGMRI-AYSENDLSEAIDQARSEALAAFGNDAV  195 (443)
Q Consensus       118 ~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iG-yPviiKp~~gGGG~Gi~v-v~~~~el~~a~~~a~~ea~~~fgd~~v  195 (443)
                      .+|++++.+|||||.|....+.+++.++++.+| |||+|||.+|.-|||+.+ ..+.+|.++||+.|.++|+.    +.|
T Consensus       221 lTK~iL~~~GvPVP~G~~~~~~~~a~~aa~~~GG~PvViKP~DGn~GrGv~~ni~~r~e~e~AY~~A~~~Sk~----~~V  296 (876)
T TIGR02068       221 LTKKILKAAGVPVPEGTVVQSAEEAWEAAEDLGGYPVVIKPYDGNHGRGVTINIETRDEIESAYEAAKEESKT----SEV  296 (876)
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHCCCC----CEE
T ss_conf             8999998478988887366778999999997189968995177998743784077748899999999860786----606


Q ss_pred             EEEEEEEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf             884434201103315777347870236566
Q gi|254780268|r  196 YIEKYLENPRHIEVQIFGDGMGNAIHFGER  225 (443)
Q Consensus       196 lvEk~i~~~rhiEvqVl~D~~g~~v~l~er  225 (443)
                      +||||+.| +|.-+-|+++   ..|+..+|
T Consensus       297 iVEr~i~G-~dhRlLVVg~---k~VAvA~R  322 (876)
T TIGR02068       297 IVERYIKG-RDHRLLVVGG---KLVAVAER  322 (876)
T ss_pred             EEEEEECC-CCEEEEEECC---EEEEEECC
T ss_conf             89876427-6238999989---68998618


No 66 
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.44  E-value=2.2e-12  Score=108.35  Aligned_cols=213  Identities=20%  Similarity=0.298  Sum_probs=135.9

Q ss_pred             CCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEE--C--CC---HHHHHHHHCHHHHHHHHHHCCCCCCCC
Q ss_conf             6989999999870998994585313109766688984592162--6--89---899987218998877664224433243
Q gi|254780268|r   61 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFI--G--PS---SEHIKIMGDKITAKKTAQQLGIPVVPG  133 (443)
Q Consensus        61 ldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fI--G--Ps---~~ai~~~gDK~~~k~~a~~~GVP~~p~  133 (443)
                      |.-..|+.-|.+.|+.-=     -|.++..|-+.-....+.++  |  +|   .-+.-.|++|..+|+++.++|+|||.|
T Consensus       433 lstq~l~~~ai~~Gi~~~-----vld~~~~fl~l~~~~~~eyvk~~~~Ts~d~y~~~limenk~vtK~vl~~~g~~vp~g  507 (753)
T PRK02471        433 LSTQILLFDAIQRGIQVE-----ILDRQDQFLKLQKGDHVEYVKNGNMTSKDNYISPLIMENKVVTKKILAEAGFPVPAG  507 (753)
T ss_pred             HHHHHHHHHHHHCCCEEE-----EECCHHCEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             778999999997697568-----834155765442298878863076366521576898841199999999859989998


Q ss_pred             CCCCCHHHHHHHHHCC-CCHHHHHCCCCCCCCEEEEE---EECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCE
Q ss_conf             3345579998732003-30122000234578216888---7506689999987543212589981688443420110331
Q gi|254780268|r  134 SGEVYPHTAMPIAKEI-GFPVLVKASAGGGGRGMRIA---YSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEV  209 (443)
Q Consensus       134 ~~~~~~~ea~~~a~~i-GyPviiKp~~gGGG~Gi~vv---~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEv  209 (443)
                      ....+.+++.+.-..+ |-|++|||..+..|.|+.+.   .+.+++.+|++.|+++      |..|+||+|++| ++.-+
T Consensus       508 ~~~~~~~~a~~~~~~~~~k~ivvKpkstn~g~gi~if~~~~~~~~~~~A~~~af~~------d~~VlVE~~i~G-~dyR~  580 (753)
T PRK02471        508 DEFTSLEEALADYSLFEDKAIVVKPKSTNFGLGISIFKEVASLEDYQKALEIAFKE------DSSVLVEEFIVG-TEYRF  580 (753)
T ss_pred             CEECCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHC------CCEEEEEEEECC-CCEEE
T ss_conf             74078999999999867996686807777877659834899989999999999856------981899973168-70699


Q ss_pred             EE----------------EEECCCCCCCCCCCCCCCCCC-------CCEE---EE-------------------------
Q ss_conf             57----------------773478702365665421135-------6225---54-------------------------
Q gi|254780268|r  210 QI----------------FGDGMGNAIHFGERDCSVQRR-------NQKI---WE-------------------------  238 (443)
Q Consensus       210 qV----------------l~D~~g~~v~l~erdCSiQrr-------~qki---iE-------------------------  238 (443)
                      -|                +|||..++--|-+.    +++       |.+-   |.                         
T Consensus       581 lVI~~kvvAv~~R~Pa~VvGDG~~TI~eLI~~----kN~dp~Rg~~~~~pl~~I~ld~~~~~~L~~qg~tldsVp~~ge~  656 (753)
T PRK02471        581 FVLDGKVEAVLLRVPANVVGDGIHTVRELVAQ----KNQDPLRGTDHRTPLEKIQLGEIEQLMLKQQGLTFDSIPKKGEI  656 (753)
T ss_pred             EEECCEEEEEEECCCCEEEECCHHHHHHHHHH----HCCCCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCCCCE
T ss_conf             99999999999047973771867569999998----65885557887787722236989999999859994552888989


Q ss_pred             -----EC------CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC---------CCCEEEEECCCCC
Q ss_conf             -----03------4455889999999999999886515434102458972---------8834998227654
Q gi|254780268|r  239 -----EA------HSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE---------NGQFYFIEMNTRL  290 (443)
Q Consensus       239 -----ea------Pap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~---------~~~~yflEvN~Rl  290 (443)
                           .|      -+...++++-....+.|+++++++|.. .+-|+++.+         .+++.++|+|.+=
T Consensus       657 V~Lr~naNlSTGG~siDvTD~ihp~~~~~A~~aa~a~gl~-i~GvDii~~di~~p~~~~~~~~~IIEvN~~P  727 (753)
T PRK02471        657 VYLRENSNISTGGDSIDMTDDMHDSYKQIAVKAAKALGAK-ICGVDLIIPDLTQPASPENPNYGIIELNFNP  727 (753)
T ss_pred             EEEECCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCC-EEEEEEEECCCCCCCCCCCCCEEEEEECCCC
T ss_conf             9983476157898715046677989999999999860998-5689997157776664457964999966886


No 67 
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.43  E-value=2.3e-12  Score=108.23  Aligned_cols=229  Identities=17%  Similarity=0.214  Sum_probs=164.2

Q ss_pred             CHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC--CCCH
Q ss_conf             98999999987099899458531310976668898459216268989998721899887766422443324333--4557
Q gi|254780268|r   62 NIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG--EVYP  139 (443)
Q Consensus        62 di~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~--~~~~  139 (443)
                      .-+.+++..+..|.-..   .-||-=+-+--+.|.+.|+..+=|+++-=..+.+|+.+-++..++|||.+|...  +.+-
T Consensus        78 qhpEv~~~ik~rg~~gk---~~fvmfdEeTe~La~~lGl~v~~P~a~LR~~ldsKi~t~Rlgn~AGvpsVPnvl~~v~sY  154 (480)
T PRK06524         78 RDPETLEFIKNRGPGGK---ACFVMFDEETQALARQAGLEVMHPPAELRHRLDSKIVMTRLADEAGVPSVPHVIGRVDSY  154 (480)
T ss_pred             CCHHHHHHHHHCCCCCE---EEEEEECHHHHHHHHHHCCCEECCHHHHHHHHCCEEEEEEECCCCCCCCCCCEEECCCCH
T ss_conf             29899999984389875---899995637899999709727558299997743611467521115887676300035669


Q ss_pred             HHHHHHHHC--CCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCC
Q ss_conf             999873200--330122000234578216888750668999998754321258998168844342011033157773478
Q gi|254780268|r  140 HTAMPIAKE--IGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMG  217 (443)
Q Consensus       140 ~ea~~~a~~--iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g  217 (443)
                      +++.+.+++  +|--++|...+|-+|+....+.++.|..+.-....       +.+++-|.|-|.. |..-+.-..-.+|
T Consensus       155 ~~L~~~~~~aglG~DLVvQt~~GdsG~tTFFi~~e~D~~k~a~eIv-------ge~eiKiMKRI~~-~~~aiEac~T~~G  226 (480)
T PRK06524        155 EELSALAHEAGLGDDLVVQTAYGDAGSTTFFVRGERDWDKYAGEIV-------GQPEIKVMKRIRN-VEVCIEACVTRHG  226 (480)
T ss_pred             HHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECHHHHHHHHHHHH-------CCCHHHHHHHHCC-CCCCEEEEECCCC
T ss_conf             9999998870888635884256788741699725656767577640-------6631534434247-6411112200387


Q ss_pred             CCCCC------CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH---CCCCCCEEEEEEC--CCCEEEEEC
Q ss_conf             70236------566542113562255403445588999999999999988651---5434102458972--883499822
Q gi|254780268|r  218 NAIHF------GERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKI---DYRGAGTIEFLYE--NGQFYFIEM  286 (443)
Q Consensus       218 ~~v~l------~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~---g~~g~~tvEFl~~--~~~~yflEv  286 (443)
                      .++--      |-.|-+--|--=..=|+.|. .+++.++++.++.+.++...+   ||+|..-|+||+|  .+++|+=|+
T Consensus       227 TivgP~MTelvGf~ELTPykGgWCGNei~~~-~~~p~~r~kare~~~k~Gd~L~~eGYrGyFevDfLiD~dt~evyLGEl  305 (480)
T PRK06524        227 TVIGPAMTSLVGYPELTPYRGAWCGNDIWRG-ALPPAQTRAAREMVAKLGDVLSREGYRGYFEVDLLHDLDADELYLGEV  305 (480)
T ss_pred             EEECHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEECC
T ss_conf             3632467754284116766776435545502-289136699999999987998744566358999988557784754036


Q ss_pred             CCCCCCCCHHHHHHHC
Q ss_conf             7654332016788632
Q gi|254780268|r  287 NTRLQVEHPVTEAITG  302 (443)
Q Consensus       287 N~Rlqveh~vte~~tg  302 (443)
                      |||++=-.|+|..+++
T Consensus       306 NPRisGAS~mTN~~a~  321 (480)
T PRK06524        306 NPRLSGASPMTNLTTE  321 (480)
T ss_pred             CCCCCCCCCCHHHHHH
T ss_conf             7644488864035667


No 68 
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.43  E-value=1.5e-12  Score=109.49  Aligned_cols=185  Identities=23%  Similarity=0.302  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHCCCCE---EECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf             899999998709989---94585313109766688984592162689899987218998877664224433243334557
Q gi|254780268|r   63 IQQIVAACEVTGADA---IHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYP  139 (443)
Q Consensus        63 i~~ii~~a~~~~~da---ihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~  139 (443)
                      ...-++-+.+ ++|+   |-|--++|=  ..+-+..|+. ..-+|+|++||+.++||..+.+.++.+ |++++-+.    
T Consensus        63 ~~~~~ek~le-~~Da~LvIAPEdd~lL--y~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e----  133 (307)
T COG1821          63 VLRDEEKALE-KADATLVIAPEDDGLL--YSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTRE----  133 (307)
T ss_pred             HHHHHHHHHH-CCCEEEEEECCCCCHH--HHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCC----
T ss_conf             8899999875-2884699804767718--9999999987-675089777876751089899988411-24888553----


Q ss_pred             HHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCC
Q ss_conf             99987320033012200023457821688875066899999875432125899816884434201103315777347870
Q gi|254780268|r  140 HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNA  219 (443)
Q Consensus       140 ~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~  219 (443)
                        .    ...+=-.++||.+|.||.|+....+..++                   .++.+||+| .|+.|. +.+|. .+
T Consensus       134 --~----~~~~~k~ViKp~dgCgge~i~~~~~~pd~-------------------~i~qEfIeG-~~lSVS-L~~GE-kv  185 (307)
T COG1821         134 --W----AEEPKKYVIKPADGCGGEGILFGRDFPDI-------------------EIAQEFIEG-EHLSVS-LSVGE-KV  185 (307)
T ss_pred             --C----CCCCCEEEECCCCCCCCCEEECCCCCCCH-------------------HHHHHHCCC-CCEEEE-EECCC-CC
T ss_conf             --5----56785688622556775102046777521-------------------667874377-614899-85587-34


Q ss_pred             CCCCCCCCCCCCCCC--EEEE----ECCCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf             236566542113562--2554----034455889999999999999886515-43410245897288349982276543
Q gi|254780268|r  220 IHFGERDCSVQRRNQ--KIWE----EAHSPVISAQDRTEIGETCVKAMKKID-YRGAGTIEFLYENGQFYFIEMNTRLQ  291 (443)
Q Consensus       220 v~l~erdCSiQrr~q--kiiE----eaPap~l~~~~~~~i~~~A~~~~~~~g-~~g~~tvEFl~~~~~~yflEvN~Rlq  291 (443)
                      .+|     |+.|.+-  .+-|    -.++| ++.++++++.+.|.+..+.++ +.|.--|+.++. +++|++|+|||+-
T Consensus       186 ~pL-----svNrQfi~~~~~~~~y~gg~~p-i~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls-D~pYvIEINpR~T  257 (307)
T COG1821         186 LPL-----SVNRQFIIFAGSELVYNGGRTP-IDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS-DEPYVIEINPRPT  257 (307)
T ss_pred             CCC-----EECHHHHHHCCCEEEECCCCCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC-CCCEEEEECCCCC
T ss_conf             430-----2322321001423443367678-8817889999999999974025554266789964-9857999468777


No 69 
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.34  E-value=9.7e-11  Score=96.65  Aligned_cols=271  Identities=18%  Similarity=0.263  Sum_probs=171.6

Q ss_pred             HHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCE---EECCCC---HHHCC-H
Q ss_conf             9998888096599985855771877675857999189985300069899999998709989---945853---13109-7
Q gi|254780268|r   17 ILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADA---IHPGYG---FLSEN-A   89 (443)
Q Consensus        17 iira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~da---ihPGyG---fLsEn-~   89 (443)
                      ..|+..++.+.+.++ |.+-....+-+.+.+...-.+ +..+..  +..+.+.|.+++-.+   |-.|=|   |.|-. .
T Consensus        18 lARSfg~~~vpv~~l-s~d~plPt~Sr~vr~t~~w~g-phd~ga--iafLrd~Aekhglkg~LLva~GDgev~lvSq~re   93 (415)
T COG3919          18 LARSFGEEFVPVLAL-SADGPLPTYSRIVRVTTHWNG-PHDEGA--IAFLRDFAEKHGLKGYLLVACGDGEVLLVSQYRE   93 (415)
T ss_pred             HHHHHCCCCCEEEEE-ECCCCCCCHHHHHEEEECCCC-CCCCCH--HHHHHHHHHHCCCCCEEEEECCCCEEEEHHHHHH
T ss_conf             887614012517998-469888644443101000489-985209--9999998761476735999638830662575699


Q ss_pred             HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCC--CCEE-
Q ss_conf             6668898459216268989998721899887766422443324333455799987320033012200023457--8216-
Q gi|254780268|r   90 KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGG--GRGM-  166 (443)
Q Consensus        90 ~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGG--G~Gi-  166 (443)
                      ++...+   .+  +-|....++.+.+|-.+.+.+.+.|+|.+.-+...+.  ....+.++-||+|+||-.|||  ..+. 
T Consensus        94 eLSa~f---~v--~lp~w~~l~wlceKPllY~ra~elgl~~P~Ty~v~S~--~d~~~~el~FPvILKP~mgg~~~~~ara  166 (415)
T COG3919          94 ELSAFF---EV--PLPDWALLRWLCEKPLLYNRAEELGLPYPKTYLVNSE--IDTLVDELTFPVILKPGMGGSVHFEARA  166 (415)
T ss_pred             HHHHHH---CC--CCCCHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECCH--HHHHHHHEEEEEEECCCCCCCCEEEHHH
T ss_conf             998876---57--7873899999860828888899819997606772314--4321231440388617888751001010


Q ss_pred             --EEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEE----EEECCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf             --888750668999998754321258998168844342011033157----77347870236566542113562255403
Q gi|254780268|r  167 --RIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQI----FGDGMGNAIHFGERDCSVQRRNQKIWEEA  240 (443)
Q Consensus       167 --~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqV----l~D~~g~~v~l~erdCSiQrr~qkiiEea  240 (443)
                        ..+.+.+|++.++..|..|    .+.+.|+|.+||+|.-  |-|-    +-|. |.-|    -+|+-.|-.|.     
T Consensus       167 Ka~~a~d~ee~k~a~~~a~ee----igpDnvvvQe~IPGGg--E~qfsyaAlw~~-g~pv----aeftarr~rqy-----  230 (415)
T COG3919         167 KAFTAADNEEMKLALHRAYEE----IGPDNVVVQEFIPGGG--ENQFSYAALWDK-GHPV----AEFTARRLRQY-----  230 (415)
T ss_pred             HEEECCCHHHHHHHHHHHHHH----CCCCCEEEEEECCCCC--CCCCHHHHHHHC-CCCH----HHHHCCHHHCC-----
T ss_conf             014316779999999998874----3997258877057998--223209889857-9834----64423422218-----


Q ss_pred             CCCC--------CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHH
Q ss_conf             4455--------889999999999999886515434102458972--883499822765433201678863256201123
Q gi|254780268|r  241 HSPV--------ISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE--NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQI  310 (443)
Q Consensus       241 Pap~--------l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~--~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~  310 (443)
                      |.+.        +.+  .+++.++|.++.+.+++.|+..|||-+|  ||.+-++|||||--+-..... ..|+||-+...
T Consensus       231 Pvdfgytst~vevvD--n~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw~wfgl~t-aaG~nLg~~Lw  307 (415)
T COG3919         231 PVDFGYTSTVVEVVD--NQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWRWFGLVT-AAGYNLGRYLW  307 (415)
T ss_pred             CCCCCCCCEEEEECC--CHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEECCCCCCEEEEEE-CCCCCCCCEEE
T ss_conf             865464527999528--289999999999863125547899875687772467762588730454774-04545301478


Q ss_pred             HHHHCCC
Q ss_conf             2221022
Q gi|254780268|r  311 YVASENR  317 (443)
Q Consensus       311 ~~a~g~~  317 (443)
                      .++.+.+
T Consensus       308 a~~~~~~  314 (415)
T COG3919         308 ADRINNE  314 (415)
T ss_pred             EEECCCC
T ss_conf             6515896


No 70 
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.17  E-value=4.3e-09  Score=84.93  Aligned_cols=256  Identities=21%  Similarity=0.280  Sum_probs=162.2

Q ss_pred             HHHHHHHHHHHHCCCEEEEECCCH-HHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHH
Q ss_conf             999999998888096599985855-7718776758579991899853000698999999987099899458531310976
Q gi|254780268|r   12 EIALRILRACKELGIPTVAVHSTA-DSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAK   90 (443)
Q Consensus        12 eia~riira~~elGi~tv~v~s~~-D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~   90 (443)
                      --|+.|++-||+.|.+|+++.... +..-.....+||.+.+.      +|-|+-.+-+--++.++--| | -|-+.+-..
T Consensus        27 HSALqIl~GAK~EGF~T~~vc~~gr~~~Y~~f~~~De~iv~d------~f~di~~~q~~L~~~NaI~I-P-hgSfv~Y~G   98 (356)
T PRK13278         27 HSSLQILKGAKKEGFRTIAICEKKREKFYKRFPFADEFIIVD------SFSDILEIQEELREMNAIVI-P-HGSFVAYLG   98 (356)
T ss_pred             HHHHHHHCCHHHCCCCEEEEECCCCCCHHHHCCCCCEEEEEC------CHHHHHHHHHHHHHCCEEEE-C-CCCEEEEEC
T ss_conf             259888532877399579996699745345477642799947------68999999999987896996-4-888589836


Q ss_pred             HHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEE
Q ss_conf             66889845921626898999872189988776642244332433345579998732003301220002345782168887
Q gi|254780268|r   91 FAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAY  170 (443)
Q Consensus        91 fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~  170 (443)
                       -+.+|+..+++.| +-.-++-..|+..-+++++++|+|.|.-..  +++       +|.-|||||...--||||-.++.
T Consensus        99 -~~~iE~~~VP~FG-NR~lLrwEs~r~~~~~lLe~Agi~~Pk~~~--~Pe-------eIDr~VIVK~~gAkggrGyF~a~  167 (356)
T PRK13278         99 -LENVEEFKVPMFG-NREILRWESDRDKERKLLEGAGIRIPRKYE--DPE-------DIDGPVIVKLPGAKGGRGYFIAS  167 (356)
T ss_pred             -HHHHHHCCCCCCC-CHHHHHHHHCHHHHHHHHHHCCCCCCEECC--CHH-------HCCCCEEEEECCCCCCCEEEEEC
T ss_conf             -8888508888205-877866510307899999867999871158--955-------57852699746777774589957


Q ss_pred             ECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEE---C-------CEEEEE-ECC--CCC---CCCCCCCCCCCCC--
Q ss_conf             506689999987543212589981688443420110---3-------315777-347--870---2365665421135--
Q gi|254780268|r  171 SENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRH---I-------EVQIFG-DGM--GNA---IHFGERDCSVQRR--  232 (443)
Q Consensus       171 ~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rh---i-------EvqVl~-D~~--g~~---v~l~erdCSiQrr--  232 (443)
                      +++|+.+..+.......- -......||+|+-|++-   .       ++.++| |..  .|+   .-++-+   -|..  
T Consensus       168 s~~ef~~k~~~l~~~g~i-~d~~~~~IeEyv~G~~~~~~yFySpl~~~lEllg~D~R~esniDg~~rlPa~---~qle~~  243 (356)
T PRK13278        168 SPEEFWEKIDRLKEKGLI-EDVEKYIIQEYVVGVPYYIHYFYSPIKNRLELLGIDRRYESNIDGLVRIPAK---DQLEAG  243 (356)
T ss_pred             CHHHHHHHHHHHHHCCCC-CCCCCCEEEEEECCCEEEHHHCCCCCCCCEEEEECCEEEEECCHHHCCCCHH---HHHHCC
T ss_conf             989999999998862754-5554427999834741231220352006613663100344052232048878---885368


Q ss_pred             -CCEEEEE--CCCCCCCHHHHHHHHHHHHHHHHHH------CCCCCCEEEEEEC-CCCEEEEECCCCCC
Q ss_conf             -6225540--3445588999999999999988651------5434102458972-88349982276543
Q gi|254780268|r  233 -NQKIWEE--AHSPVISAQDRTEIGETCVKAMKKI------DYRGAGTIEFLYE-NGQFYFIEMNTRLQ  291 (443)
Q Consensus       233 -~qkiiEe--aPap~l~~~~~~~i~~~A~~~~~~~------g~~g~~tvEFl~~-~~~~yflEvN~Rlq  291 (443)
                       ++.-++.  .|+ .+-+.+..++.+++.+..++.      |.-|....|.+++ +-+|++-||.+|+.
T Consensus       244 ~~p~~vvvGn~p~-vlRESLL~~vf~~ge~fV~a~k~l~~PG~iGPFcLq~vvt~~le~vvFevS~RIv  311 (356)
T PRK13278        244 IDPTYVVTGNIPL-VLRESLLPQVFEYGERFVEASKELVGPGMIGPFCLESVITDDLEIVVFEISARIV  311 (356)
T ss_pred             CCCCEEEECCCCC-EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECCCC
T ss_conf             9984699888532-4417657999999999999999746998634543668986986099999854313


No 71 
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.10  E-value=3.3e-08  Score=78.63  Aligned_cols=256  Identities=18%  Similarity=0.223  Sum_probs=155.2

Q ss_pred             HHHHHHHHHHHHCCCEEEEECCCHHHCCCCH---HHCCEEEECCCCCCCCHHCCH--HHHHHHHHHCCCCEEECCCCHHH
Q ss_conf             9999999988880965999858557718776---758579991899853000698--99999998709989945853131
Q gi|254780268|r   12 EIALRILRACKELGIPTVAVHSTADSGAMHV---RLADESVCIGPPSSKDSYLNI--QQIVAACEVTGADAIHPGYGFLS   86 (443)
Q Consensus        12 eia~riira~~elGi~tv~v~s~~D~~a~~~---~~ADe~~~i~~~~~~~sYldi--~~ii~~a~~~~~daihPGyGfLs   86 (443)
                      --|+.|++-||+.|.+|++|.. ..+.-++.   ..+||.+.+.      +|-|+  +.+-+--++.++--|.-|.  +.
T Consensus        23 HSALqIl~GAK~EGF~Tv~vc~-kgRe~~Y~~f~~~~De~iv~d------~f~di~~~~~q~~L~~~NaI~IPhgS--fv   93 (363)
T PRK13277         23 HSALDVLDGAKDEGFRTIAVCQ-RGRERTYREFKGIVDEVIVLD------KFKDILSEEIQEELREENAIFVPNRS--FA   93 (363)
T ss_pred             HHHHHHHCCHHHCCCCEEEEEC-CCCCCHHHHCCCCCCEEEEEC------CHHHHHHHHHHHHHHHCCEEEECCCC--EE
T ss_conf             2598885448773994799957-987524775557784699955------57777548999999878979964888--46


Q ss_pred             CCHHHHHHHHH-CCCEEECCCHHHHHHH--HCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCC-
Q ss_conf             09766688984-5921626898999872--1899887766422443324333455799987320033012200023457-
Q gi|254780268|r   87 ENAKFAEILED-HHIKFIGPSSEHIKIM--GDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGG-  162 (443)
Q Consensus        87 En~~fa~~~e~-~Gi~fIGPs~~ai~~~--gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGG-  162 (443)
                      +=.. .+.+|+ ..+++.|. -.-++-.  .++-....+++++|+|.|.-..  +++       +|.-|||||...--| 
T Consensus        94 ~Y~G-~d~iE~~~~VP~FGN-R~lLrwEer~~~~~~~~LLe~Agi~~Pk~~~--~Pe-------eIDr~VIVK~~gAkg~  162 (363)
T PRK13277         94 VYVG-YDAIENEFPVPIFGN-RYLLRWEERTGEKNYYRLLEKAGIPRPRTFK--PPE-------EIDRPVIVKLPEAKRR  162 (363)
T ss_pred             EEEC-HHHHHCCCCCCEECC-HHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC--CHH-------HCCCCEEEEECCCCCC
T ss_conf             7744-888850688871147-5663223451167899999867999870059--966-------6785269974567787


Q ss_pred             -CCEEEEEEECHHHHHHHHHHHHHHHCC-CCCCCEEEEEEEEEEEE---C-------CEEEEE-ECC--CC---CCCCCC
Q ss_conf             -821688875066899999875432125-89981688443420110---3-------315777-347--87---023656
Q gi|254780268|r  163 -GRGMRIAYSENDLSEAIDQARSEALAA-FGNDAVYIEKYLENPRH---I-------EVQIFG-DGM--GN---AIHFGE  224 (443)
Q Consensus       163 -G~Gi~vv~~~~el~~a~~~a~~ea~~~-fgd~~vlvEk~i~~~rh---i-------EvqVl~-D~~--g~---~v~l~e  224 (443)
                       |||-.++.+++|+.+..+.......-. -+-....||+|+-|++-   .       ++.++| |..  .|   ..-++-
T Consensus       163 ~grGyF~a~s~~ef~~k~~~li~~G~I~~e~l~~~~IeEyv~G~~~~~~fFySpl~~~lEllgiD~R~esniDg~~rlpA  242 (363)
T PRK13277        163 LERGFFIAASYKDFYEKSERLIKQGVIDREDLEKARIEEYVIGAHFNFNYFYSPIRDRVELLGIDRRIQSNLDGFVRLPA  242 (363)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEECCCEEEEEECCCCCCCCEEEEECCCEEEECHHHHHCCCH
T ss_conf             76358996798999999999987587572214443789984376466521025323750366311102414144423986


Q ss_pred             CCCCCCC---CCCEEEEE--CCCCCCCHHHHHHHHHHHHHHHHHH------CCCCCCEEEEEEC-CCCEEEEECCCCCC
Q ss_conf             6542113---56225540--3445588999999999999988651------5434102458972-88349982276543
Q gi|254780268|r  225 RDCSVQR---RNQKIWEE--AHSPVISAQDRTEIGETCVKAMKKI------DYRGAGTIEFLYE-NGQFYFIEMNTRLQ  291 (443)
Q Consensus       225 rdCSiQr---r~qkiiEe--aPap~l~~~~~~~i~~~A~~~~~~~------g~~g~~tvEFl~~-~~~~yflEvN~Rlq  291 (443)
                      +   .|.   .++.-++.  .|+ .+-+.+..++.+++.+..++.      |.-|....|.+++ +.+|++-||.+|+.
T Consensus       243 ~---~Ql~~~~~p~~vvvGn~p~-vlRESLL~~vf~~ge~fV~ask~l~~pG~iGPFcLq~ivt~dle~vvFevS~RI~  317 (363)
T PRK13277        243 P---QQLKLNEEPRYIEVGHEPA-TIRESLLEKVFDMGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVYDVAPRIG  317 (363)
T ss_pred             H---HHHCCCCCCCEEEECCCCC-EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECCCC
T ss_conf             7---8841689984599888532-4317657999999999999999746998614433568985886099999844214


No 72 
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl    5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and    metabolism]
Probab=98.95  E-value=1.5e-07  Score=73.91  Aligned_cols=252  Identities=21%  Similarity=0.285  Sum_probs=156.5

Q ss_pred             HHHHHHHHHHHCCCEEEEECCC-HHHCCCCHHHCCEEEECCCCCCCCHHCCH--HHHHHHHHHCCCC-------EEECCC
Q ss_conf             9999999888809659998585-57718776758579991899853000698--9999999870998-------994585
Q gi|254780268|r   13 IALRILRACKELGIPTVAVHST-ADSGAMHVRLADESVCIGPPSSKDSYLNI--QQIVAACEVTGAD-------AIHPGY   82 (443)
Q Consensus        13 ia~riira~~elGi~tv~v~s~-~D~~a~~~~~ADe~~~i~~~~~~~sYldi--~~ii~~a~~~~~d-------aihPGy   82 (443)
                      -|+.|.+.||+.|.+|++|... .+........||+.+.++      .|.|+  +.|.+--++.++-       +.+-||
T Consensus        28 SaL~Il~GAK~EGF~Ti~v~~~gr~~~Y~~f~~a~e~i~v~------~f~dil~~~iqe~L~~~n~I~IP~gSfv~Y~G~  101 (361)
T COG1759          28 SALQILDGAKEEGFRTIAVCQRGREKPYEKFPVADEVIIVD------KFSDILNEEIQEELRELNAIFIPHGSFVAYVGY  101 (361)
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCHHHEEEEEC------HHHHHHHHHHHHHHHHCCEEEECCCCEEEEECC
T ss_conf             47888633776087279998357623676502023488952------047776489999998758499427864788531


Q ss_pred             CHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCC
Q ss_conf             31310976668898459216268989998721899887766422443324333455799987320033012200023457
Q gi|254780268|r   83 GFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGG  162 (443)
Q Consensus        83 GfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGG  162 (443)
                      -         ....+.-++..| +-+.++-..|+..-+.+++++|++.|.-+  .+++|       |.-|||||.-..-|
T Consensus       102 d---------~ie~~~~vP~fG-nR~lLrwE~~~~~~~~lLekAgi~~P~~~--~~Pee-------Idr~ViVK~pgAkg  162 (361)
T COG1759         102 D---------GIENEFEVPMFG-NRELLRWEEDRKLEYKLLEKAGLRIPKKY--KSPEE-------IDRPVIVKLPGAKG  162 (361)
T ss_pred             H---------HHHHCCCCCCCC-CHHHHHHHCCHHHHHHHHHHCCCCCCCCC--CCHHH-------CCCCEEEECCCCCC
T ss_conf             4---------464411466116-67675300033568999997499988566--99678-------68736985577667


Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHC-CCCCCCEEEEEEEEEEE---EC-------CEEEEE-ECC--CCC---CCCCCC
Q ss_conf             82168887506689999987543212-58998168844342011---03-------315777-347--870---236566
Q gi|254780268|r  163 GRGMRIAYSENDLSEAIDQARSEALA-AFGNDAVYIEKYLENPR---HI-------EVQIFG-DGM--GNA---IHFGER  225 (443)
Q Consensus       163 G~Gi~vv~~~~el~~a~~~a~~ea~~-~fgd~~vlvEk~i~~~r---hi-------EvqVl~-D~~--g~~---v~l~er  225 (443)
                      |||-.++.+++|+.+..++......- .-+-...-||+||-|++   |.       ++.++| |..  .|.   +-++-+
T Consensus       163 gRGyFiA~s~eef~ek~erl~~~gvi~~Edlkna~IeEYv~G~~f~~~yFyS~i~~~lEl~g~D~R~Esn~Dg~~RlPa~  242 (361)
T COG1759         163 GRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVGAPFYFHYFYSPIKDRLELLGIDRRYESNLDGLVRLPAK  242 (361)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHCEEEEEEECCCEEEEEEECCCCCCEEEEEEEHHEECCCHHHCCCCHH
T ss_conf             74379976989999999999872876534432135447750660134552023457045763002013162121157878


Q ss_pred             CC-CCCCCCCEEEEE--CCCCCCCHHHHHHHHHHHHHHHHHH------CCCCCCEEEEEEC-CCCEEEEECCCCCC
Q ss_conf             54-211356225540--3445588999999999999988651------5434102458972-88349982276543
Q gi|254780268|r  226 DC-SVQRRNQKIWEE--AHSPVISAQDRTEIGETCVKAMKKI------DYRGAGTIEFLYE-NGQFYFIEMNTRLQ  291 (443)
Q Consensus       226 dC-SiQrr~qkiiEe--aPap~l~~~~~~~i~~~A~~~~~~~------g~~g~~tvEFl~~-~~~~yflEvN~Rlq  291 (443)
                      |- -+ ..+++.++.  .|+ .+-+.+..++.+++.+..++.      |.-|..+.|.+++ +=++|+-||.+|+-
T Consensus       243 ~ql~l-~~~ptyvv~Gn~p~-vlRESLL~~vfe~ger~V~a~kel~~PG~iGpFcLq~i~t~dl~~vVFevS~Ri~  316 (361)
T COG1759         243 DQLEL-NLEPTYVVVGNIPV-VLRESLLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTDDLEFVVFEVSARIV  316 (361)
T ss_pred             HHHHC-CCCCEEEEECCCCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEEECCCC
T ss_conf             99745-89952899878513-2477778999999999999998745998513200200146875189999753104


No 73 
>pfam08442 ATP-grasp_2 ATP-grasp domain.
Probab=98.89  E-value=3.7e-09  Score=85.44  Aligned_cols=164  Identities=23%  Similarity=0.301  Sum_probs=103.8

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH-HHHHCCCCCC--CC--EEEEEEECHHHHHHHHHHHHHHHC---
Q ss_conf             988776642244332433345579998732003301-2200023457--82--168887506689999987543212---
Q gi|254780268|r  117 ITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFP-VLVKASAGGG--GR--GMRIAYSENDLSEAIDQARSEALA---  188 (443)
Q Consensus       117 ~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyP-viiKp~~gGG--G~--Gi~vv~~~~el~~a~~~a~~ea~~---  188 (443)
                      ..+|+++++.|||+|+|....+++++.++++++|+| +++||--..|  |+  |++++++++|+.+..+........   
T Consensus         5 yqaK~ll~~~gIpvp~g~~~~~~~ea~~~~~~l~~~~~VvKaQv~aGGRGKaGGVk~~~~~~ea~~~a~~~lg~~l~T~Q   84 (202)
T pfam08442         5 YQAKEILAKYGVPVPRGEVAFSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKAGGVKLAKSPEEAKEAAKEMLGKNLVTKQ   84 (202)
T ss_pred             HHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHCCCEEEEEE
T ss_conf             89999999859989991596999999999998099869998742358887677389978999999999987297787550


Q ss_pred             ----CCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCC-----CCCCCCCC---CCCC-EEE--EECCCCCCCHHHHHHH
Q ss_conf             ----5899816884434201103315777347870236-----56654211---3562-255--4034455889999999
Q gi|254780268|r  189 ----AFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHF-----GERDCSVQ---RRNQ-KIW--EEAHSPVISAQDRTEI  253 (443)
Q Consensus       189 ----~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l-----~erdCSiQ---rr~q-kii--EeaPap~l~~~~~~~i  253 (443)
                          ...=..++||+.++-.||+-+.++-|+..+.+.+     |.-|  |+   ..++ |++  ..-|.-++++....+ 
T Consensus        85 Tg~~G~~V~~vlvee~~~i~~E~Ylsi~~DR~~~~~~ii~S~~GG~d--IEeVa~~~Pe~I~k~~id~~~gl~~~~~r~-  161 (202)
T pfam08442        85 TGPEGKPVNKVLVEEAVDIAREYYLSIVLDRASRGPVVIASSEGGVD--IEEVAAKNPEAIIKVPIDPAKGLTPYQARE-  161 (202)
T ss_pred             CCCCCCEEEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEECCCCCC--HHHHHCCCHHHEEEEEECCCCCCCHHHHHH-
T ss_conf             27889623389998515401007999997577784478972678850--999730095572999718787989999999-


Q ss_pred             HHHHHHHHHHHCCCCCCE---EEE------EECCCCEEEEECCCC
Q ss_conf             999999886515434102---458------972883499822765
Q gi|254780268|r  254 GETCVKAMKKIDYRGAGT---IEF------LYENGQFYFIEMNTR  289 (443)
Q Consensus       254 ~~~A~~~~~~~g~~g~~t---vEF------l~~~~~~yflEvN~R  289 (443)
                            ++..+|..+-..   .++      ++.+...-++|+||=
T Consensus       162 ------~~~~lg~~~~~~~~~~~~i~~Ly~~f~~~Da~llEINPL  200 (202)
T pfam08442       162 ------IAFKLGLEGELVKQAADIIKKLYKLFVEYDATLVEINPL  200 (202)
T ss_pred             ------HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             ------999849998999999999999999999669828975688


No 74 
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.71  E-value=8.6e-08  Score=75.71  Aligned_cols=103  Identities=26%  Similarity=0.391  Sum_probs=79.6

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHH-HHHCC-CCCC-C--CEEEEEEECHHHHHHHHHHHHHHH----
Q ss_conf             9887766422443324333455799987320033012-20002-3457-8--216888750668999998754321----
Q gi|254780268|r  117 ITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPV-LVKAS-AGGG-G--RGMRIAYSENDLSEAIDQARSEAL----  187 (443)
Q Consensus       117 ~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPv-iiKp~-~gGG-G--~Gi~vv~~~~el~~a~~~a~~ea~----  187 (443)
                      ..+|+++++.|||+|+|....+++|+..+++++|+|. +||+- ..|| |  =|+++|++++|+.+..+.......    
T Consensus         6 yqaKell~~~gIpvp~g~v~~~~~ea~~~~~~l~~~~~VvKAQV~aGGRGKaGGVk~~~s~~ea~~~a~~ilg~~lvT~Q   85 (388)
T PRK00696          6 YQAKELLAEYGVPVPRGYVAFTPEEAVEAAEELGGPVWVVKAQVHAGGRGKAGGVKVAKSKEEVRAAAEEILGKDLVTHQ   85 (388)
T ss_pred             HHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEEC
T ss_conf             99999999869989997377999999999998299958999805458888686079908999999999998567742101


Q ss_pred             ---CCCCCCCEEEEEEEEEEEECCEEEEEECCCCC
Q ss_conf             ---25899816884434201103315777347870
Q gi|254780268|r  188 ---AAFGNDAVYIEKYLENPRHIEVQIFGDGMGNA  219 (443)
Q Consensus       188 ---~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~  219 (443)
                         ....=..||||+.++-.||+=+.++-|+....
T Consensus        86 Tg~~G~~V~~vlvee~~~i~~E~Ylsi~~DR~~~~  120 (388)
T PRK00696         86 TGPEGQPVNRLLIEEGADIAKELYLSAVVDRATRR  120 (388)
T ss_pred             CCCCCCEEEEEEEEECCCHHHHEEEEEEEECCCCC
T ss_conf             58888444799987516612406899998647785


No 75 
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=98.68  E-value=4.2e-08  Score=77.91  Aligned_cols=167  Identities=23%  Similarity=0.306  Sum_probs=104.3

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC-CHHHHHCCCCCCCC----EEEEEEECHHHHHHHHHHHH----HHH
Q ss_conf             9887766422443324333455799987320033-01220002345782----16888750668999998754----321
Q gi|254780268|r  117 ITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIG-FPVLVKASAGGGGR----GMRIAYSENDLSEAIDQARS----EAL  187 (443)
Q Consensus       117 ~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iG-yPviiKp~~gGGG~----Gi~vv~~~~el~~a~~~a~~----ea~  187 (443)
                      ..+|+++.+.|||+++|....+++++.++++++| .|+++|+--.-|||    |++++.+.+|..++.+....    ...
T Consensus         6 YqaKelf~~~GiPvp~g~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~   85 (387)
T COG0045           6 YQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDI   85 (387)
T ss_pred             HHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCC
T ss_conf             88998999729989995454089999999998189967999225305766667668838989999999998486654576


Q ss_pred             CCCCCCCEEEEEEEEEE-EECCEEEEEECCCCCCCCC-CCCCC--CC---CCCC-EEE--EECCCCCCCHHHHHHHHHHH
Q ss_conf             25899816884434201-1033157773478702365-66542--11---3562-255--40344558899999999999
Q gi|254780268|r  188 AAFGNDAVYIEKYLENP-RHIEVQIFGDGMGNAIHFG-ERDCS--VQ---RRNQ-KIW--EEAHSPVISAQDRTEIGETC  257 (443)
Q Consensus       188 ~~fgd~~vlvEk~i~~~-rhiEvqVl~D~~g~~v~l~-erdCS--iQ---rr~q-kii--EeaPap~l~~~~~~~i~~~A  257 (443)
                      ..-.=..+|||++++.. +|+=+.++-|+...+..+- -++--  |+   ..++ ||+  ...|.+++.+-+       +
T Consensus        86 ~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~~~~idp~~g~~~~~-------a  158 (387)
T COG0045          86 KGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPLTGLRPYQ-------A  158 (387)
T ss_pred             CCCEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHEEEEEECCCCCCCHHH-------H
T ss_conf             884542899974677764337999999737783799996677951899500283452689747766878779-------9


Q ss_pred             HHHHHHHCCCCCCE---EEE---EE---CCCCEEEEECCCCC
Q ss_conf             99886515434102---458---97---28834998227654
Q gi|254780268|r  258 VKAMKKIDYRGAGT---IEF---LY---ENGQFYFIEMNTRL  290 (443)
Q Consensus       258 ~~~~~~~g~~g~~t---vEF---l~---~~~~~yflEvN~Rl  290 (443)
                      ..++..+|+.+---   .++   |+   -+-+.-++|+||=.
T Consensus       159 R~la~~lgl~~~~~~~~~~ii~~ly~~f~~~Da~lvEINPLv  200 (387)
T COG0045         159 RELAFKLGLEGELVKQVADIIKKLYKLFVEKDATLVEINPLV  200 (387)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCE
T ss_conf             999997499878999999999999999997587678752508


No 76 
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809   There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC)  is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC)  is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits.   This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=98.63  E-value=2e-07  Score=73.06  Aligned_cols=178  Identities=23%  Similarity=0.286  Sum_probs=118.6

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC-CHHHHHCCCCCCCC----EEEEEEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             9887766422443324333455799987320033-01220002345782----168887506689999987543212589
Q gi|254780268|r  117 ITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIG-FPVLVKASAGGGGR----GMRIAYSENDLSEAIDQARSEALAAFG  191 (443)
Q Consensus       117 ~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iG-yPviiKp~~gGGG~----Gi~vv~~~~el~~a~~~a~~ea~~~fg  191 (443)
                      ..||+++++.|||+++|....+.+|+...++++| .+++||+==.-|||    |+.++++.+|+.++-+..++.-..+|=
T Consensus         6 YqAK~if~~YGiPvp~g~v~~s~~e~~~~~~~~g~~~~VvKaQVhaGGRGKAGGv~~a~s~ee~~~~a~~llg~~l~t~Q   85 (389)
T TIGR01016         6 YQAKEIFAKYGIPVPEGEVATSVEEVEEIAEELGEGKVVVKAQVHAGGRGKAGGVKVAKSKEEALKAAEKLLGKELKTFQ   85 (389)
T ss_pred             HHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCEEEEEE
T ss_conf             55899998478967886004167899999997079978999877326711215768970879999999987089157864


Q ss_pred             C-------CCEEEEEEEEEEEECCEEEEEECCCCCCCC-----CCCCC-CCCCCCC-EEEEEC--CCC------------
Q ss_conf             9-------816884434201103315777347870236-----56654-2113562-255403--445------------
Q gi|254780268|r  192 N-------DAVYIEKYLENPRHIEVQIFGDGMGNAIHF-----GERDC-SVQRRNQ-KIWEEA--HSP------------  243 (443)
Q Consensus       192 d-------~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l-----~erdC-SiQrr~q-kiiEea--Pap------------  243 (443)
                      .       .+||||+.++=.||+=+.++=|+.-.++.+     |.=|= -|=.+++ ||+-.+  |..            
T Consensus        86 t~~~g~~VnkiliE~~~~I~kEyY~s~v~DR~~~~pv~maS~eGGvdIEEvA~~~Pe~I~k~~idp~~~~~pYq~R~~a~  165 (389)
T TIGR01016        86 TDPLGQPVNKILIEEKIDIDKEYYLSIVIDRSAKKPVIMASTEGGVDIEEVAEKSPEKIIKVAIDPLTGLLPYQARELAK  165 (389)
T ss_pred             CCCCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf             07888634478732677412001477999804787179970677841789952195716888717777778789999999


Q ss_pred             --CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCC-CCHHHHHHHHHC
Q ss_conf             --588999999999999988651543410245897288349982276543320167886325-620112322210
Q gi|254780268|r  244 --VISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGI-DLVHEQIYVASE  315 (443)
Q Consensus       244 --~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgv-dlv~~~~~~a~g  315 (443)
                        .|+.++.+++.+...++++-.            -+.+.-++|+||=+         +|.- +|+-+=.++...
T Consensus       166 ~~~l~~~~~~~~~~i~~~Ly~~F------------~e~Da~L~EINPLV---------iT~~G~L~alDAKl~~D  219 (389)
T TIGR01016       166 KLGLEGELIKQVASIIKKLYQIF------------LEKDASLVEINPLV---------ITKDGNLVALDAKLTID  219 (389)
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHH------------HHCCCCEEEECCEE---------ECCCCCEEEEEEECCCC
T ss_conf             70897057788999999999988------------75371025452636---------87898889983322446


No 77 
>PRK05246 glutathione synthetase; Provisional
Probab=98.30  E-value=1.9e-05  Score=59.01  Aligned_cols=265  Identities=15%  Similarity=0.228  Sum_probs=136.8

Q ss_pred             CHHHHHHHHHHHHCCCEEEEECCCHHHCCCC-HHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC------
Q ss_conf             0999999998888096599985855771877-675857999189985300069899999998709989945853------
Q gi|254780268|r   11 GEIALRILRACKELGIPTVAVHSTADSGAMH-VRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG------   83 (443)
Q Consensus        11 Geia~riira~~elGi~tv~v~s~~D~~a~~-~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG------   83 (443)
                      .---++++.+|++.|++..... ..| .+.. -..--.+..+........|.....- +...-...|+|+.=..      
T Consensus        18 kDTT~~Lm~eAq~rGhev~~~~-p~d-L~~~~~~v~a~~~~v~~~~~~~~~~~~~~~-~~~~L~~fD~V~mRkDPPfD~~   94 (316)
T PRK05246         18 KDSTFAMMLEAQRRGHELFYYE-PDD-LSLRGGEVRARARPLTVRDDKGDWYELGEE-QRLPLADFDVILMRKDPPFDME   94 (316)
T ss_pred             CCHHHHHHHHHHHCCCEEEEEE-CCC-EEEECCEEEEEEEEEEECCCCCCCEEECCC-EECCHHHCCEEEECCCCCCCHH
T ss_conf             8729999999998799899997-275-699899999999999981588874794151-5513001989999269999768


Q ss_pred             HHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCC
Q ss_conf             13109766688984592162689899987218998877664224433243334557999873200330122000234578
Q gi|254780268|r   84 FLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGG  163 (443)
Q Consensus        84 fLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG  163 (443)
                      ++. +..+-+.++..|+.+| -+|.+|+.+.+|..+-++.+-    +||-....+.++..+|.++.| .+++||.+|-||
T Consensus        95 Yi~-~T~lLe~~~~~gv~Vi-N~P~~IR~~nEKL~~l~F~~~----iP~TlVt~~~~~i~~F~~~~~-~iVlKPL~g~gG  167 (316)
T PRK05246         95 YIY-ATYLLERAERAGTLVV-NKPQSLRDANEKLFTLWFPEL----MPPTLVTRDKAEIRAFRAEHG-DIILKPLDGMGG  167 (316)
T ss_pred             HHH-HHHHHHHHCCCCEEEE-CCHHHHHHHHHHHHHHHHHHH----CCCEEEECCHHHHHHHHHHHC-CEEEEECCCCCC
T ss_conf             889-9999985153870897-698998642647888740644----899357378999999999738-789997568898


Q ss_pred             CEEEEEEE-CHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC--EEEEEECCCCCCCCCCCCCCCCCCCCEE----
Q ss_conf             21688875-0668999998754321258998168844342011033--1577734787023656654211356225----
Q gi|254780268|r  164 RGMRIAYS-ENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE--VQIFGDGMGNAIHFGERDCSVQRRNQKI----  236 (443)
Q Consensus       164 ~Gi~vv~~-~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE--vqVl~D~~g~~v~l~erdCSiQrr~qki----  236 (443)
                      .|+..+.. ...+...++...+.     +..++++.+||+..+.=.  |-++ |  |..+.     -++.|..|+-    
T Consensus       168 ~gV~~i~~~d~n~~~i~e~~t~~-----~~~~v~vQ~yl~ei~~GDkRiilv-~--G~~ig-----~a~~R~p~~gdfR~  234 (316)
T PRK05246        168 AGIFRVKADDPNLGVILETLTEQ-----GRRPVMAQRYLPEIKEGDKRILLV-D--GEPVG-----YALARIPAGGETRG  234 (316)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHC-----CCEEEEEEEEHHHCCCCCEEEEEE-C--CEEEH-----HEEEECCCCCCCEE
T ss_conf             40899777862389999999745-----873689886512436898799999-9--99911-----46883267886113


Q ss_pred             -EE---ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--EEEEEECCCCEEEEECCCCCCCCCH----HHHHHHCCCCH
Q ss_conf             -54---03445588999999999999988651543410--2458972883499822765433201----67886325620
Q gi|254780268|r  237 -WE---EAHSPVISAQDRTEIGETCVKAMKKIDYRGAG--TIEFLYENGQFYFIEMNTRLQVEHP----VTEAITGIDLV  306 (443)
Q Consensus       237 -iE---eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~--tvEFl~~~~~~yflEvN~Rlqveh~----vte~~tgvdlv  306 (443)
                       +.   .+-+..|++..++-    +.+++..|.-.|+.  -++.+   | -|++|||-    +.|    =-+..||+|+.
T Consensus       235 Nl~~Gg~~~~~~lt~~~~~i----~~~i~p~L~~~gl~f~GiDvi---g-~~ltEINV----TSPtgl~ei~~~~~~~~~  302 (316)
T PRK05246        235 NLAAGGRGEATPLTERDREI----CAAIGPELKERGLIFVGIDVI---G-DYLTEINV----TSPTGIREIERLTGVDIA  302 (316)
T ss_pred             EEECCCEEEEECCCHHHHHH----HHHHHHHHHHCCCEEEEEEEE---C-CEEEEEEC----CCCHHHHHHHHHHCCCHH
T ss_conf             23059802671699899999----999999999879889999753---7-82689936----895459999987599989


Q ss_pred             HHHH
Q ss_conf             1123
Q gi|254780268|r  307 HEQI  310 (443)
Q Consensus       307 ~~~~  310 (443)
                      ..-+
T Consensus       303 ~~~~  306 (316)
T PRK05246        303 GMLW  306 (316)
T ss_pred             HHHH
T ss_conf             9999


No 78 
>pfam02955 GSH-S_ATP Prokaryotic glutathione synthetase, ATP-grasp domain.
Probab=98.27  E-value=1.8e-05  Score=59.23  Aligned_cols=141  Identities=18%  Similarity=0.260  Sum_probs=78.4

Q ss_pred             CCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECH-HHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEE--EC
Q ss_conf             2433345579998732003301220002345782168887506-68999998754321258998168844342011--03
Q gi|254780268|r  131 VPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSEN-DLSEAIDQARSEALAAFGNDAVYIEKYLENPR--HI  207 (443)
Q Consensus       131 ~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~-el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~r--hi  207 (443)
                      |+-....+.+++.++.++.| .+++||.+|.+|+|+..+.+.+ .+...++....     .+...+++.+||+...  .+
T Consensus        13 P~T~vt~~~~~i~~f~~~~g-~vVvKPl~Gs~G~GV~~i~~~~~~~~~i~e~~~~-----~~~~~ii~QeyI~~~~~gD~   86 (176)
T pfam02955        13 PPTLVTRDKEEIRAFLEEHG-DIILKPLDGMGGAGVFRIKKDDPNLNVILETLTQ-----YGRRPVMAQRYLPEIKEGDK   86 (176)
T ss_pred             CCEEEECCHHHHHHHHHHCC-CEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHH-----CCCCCEEEEECCCCCCCCCE
T ss_conf             69479889999999999779-8999957888876759954783558999999984-----68883986431376789976


Q ss_pred             CEEEEEECCCCCCCCCCC---CCCCCC-CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEE
Q ss_conf             315777347870236566---542113-5622554034455889999999999999886515434102458972883499
Q gi|254780268|r  208 EVQIFGDGMGNAIHFGER---DCSVQR-RNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYF  283 (443)
Q Consensus       208 EvqVl~D~~g~~v~l~er---dCSiQr-r~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yf  283 (443)
                      -|-|++   |.++.-..|   +-++-. -+|--. -.+. .|+++++ ++...+.+..++.|.. .+-|+++    ..|+
T Consensus        87 Rv~vi~---g~~v~a~~R~~~~g~~r~Nl~~Gg~-~~~~-~lt~~~~-~ia~~~a~~l~~~Gl~-faGVDii----g~~l  155 (176)
T pfam02955        87 RILLVN---GEPIGALARIPAEGEFRGNLAAGGR-GEAT-ELTERDR-EICETIGPKLKERGLF-FVGLDVI----GDYL  155 (176)
T ss_pred             EEEEEC---CEEEEEEEEECCCCCCEEEECCCCE-EECC-CCCHHHH-HHHHHHHHHHHHCCCE-EEEEEEE----CCEE
T ss_conf             999999---9998999985479852144026980-0057-8999999-9999999999986997-9999984----7908


Q ss_pred             EECCC
Q ss_conf             82276
Q gi|254780268|r  284 IEMNT  288 (443)
Q Consensus       284 lEvN~  288 (443)
                      +|||.
T Consensus       156 ~EVNv  160 (176)
T pfam02955       156 TEINV  160 (176)
T ss_pred             EEEEC
T ss_conf             89958


No 79 
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase homolog; InterPro: IPR011758   Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (IPR004666 from INTERPRO), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown..
Probab=98.24  E-value=3.8e-05  Score=56.94  Aligned_cols=193  Identities=19%  Similarity=0.301  Sum_probs=106.6

Q ss_pred             HCHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHCC-CCH-HHHHCCCCCCCCEEEEEE---------------ECHHH
Q ss_conf             18998877664224433243334557-9998732003-301-220002345782168887---------------50668
Q gi|254780268|r  114 GDKITAKKTAQQLGIPVVPGSGEVYP-HTAMPIAKEI-GFP-VLVKASAGGGGRGMRIAY---------------SENDL  175 (443)
Q Consensus       114 gDK~~~k~~a~~~GVP~~p~~~~~~~-~ea~~~a~~i-GyP-viiKp~~gGGG~Gi~vv~---------------~~~el  175 (443)
                      -||.++|.+|.++|+.||.-+.+++. .|...+-+=+ ++| -+|||+.|.||.|+-|+.               +.+|+
T Consensus        36 DDKl~TK~~A~AaGi~VPelyGVI~~q~ev~~~~~ivkdh~dFVIKPAqGsGG~GIlVit~r~~~ryr~~sG~~i~~eei  115 (320)
T TIGR02291        36 DDKLKTKILAIAAGIAVPELYGVIEIQKEVKSLDDIVKDHEDFVIKPAQGSGGDGILVITDRLDERYRKSSGALISKEEI  115 (320)
T ss_pred             CCHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCEECCCCCCCCHHHH
T ss_conf             31367889987336711013010023466543466627889836726606798727997036688403541010154567


Q ss_pred             HHHHHHHHH--HHHCCCCCCCEEEEEEEEEEE-----------ECCEEEE---------------EECCCCCCC------
Q ss_conf             999998754--321258998168844342011-----------0331577---------------734787023------
Q gi|254780268|r  176 SEAIDQARS--EALAAFGNDAVYIEKYLENPR-----------HIEVQIF---------------GDGMGNAIH------  221 (443)
Q Consensus       176 ~~a~~~a~~--ea~~~fgd~~vlvEk~i~~~r-----------hiEvqVl---------------~D~~g~~v~------  221 (443)
                      +..+-.+..  +|+.- .+++-+||-.|..--           -|-+=|+               .||.-| +|      
T Consensus       116 E~hvSniL~GLySLGG-~~D~AliEyrvkfDp~F~~~SYeGVPDiRiIVf~GyPVmaM~RlpTr~SdGKAN-LHQGAvGv  193 (320)
T TIGR02291       116 ERHVSNILAGLYSLGG-KRDRALIEYRVKFDPLFESVSYEGVPDIRIIVFKGYPVMAMLRLPTRASDGKAN-LHQGAVGV  193 (320)
T ss_pred             HHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCC-CCCCCEEE
T ss_conf             7888888877765079-977368853201053447711134587268964186102100276567888302-12460242


Q ss_pred             ---CC-CCC-CCCCCCCCEEEEECCCCCCC-----HHHHHHHHHHHHHHHHHHC--CCCCCEEEEEEC-CCCEEEEECCC
Q ss_conf             ---65-665-42113562255403445588-----9999999999999886515--434102458972-88349982276
Q gi|254780268|r  222 ---FG-ERD-CSVQRRNQKIWEEAHSPVIS-----AQDRTEIGETCVKAMKKID--YRGAGTIEFLYE-NGQFYFIEMNT  288 (443)
Q Consensus       222 ---l~-erd-CSiQrr~qkiiEeaPap~l~-----~~~~~~i~~~A~~~~~~~g--~~g~~tvEFl~~-~~~~yflEvN~  288 (443)
                         |. .|- -.+|-++  .|+-=|-.+-+     =--=+++-+.|....+-+|  |.|   |+..+| +..+-+||.|.
T Consensus       194 GiDlaTG~t~~a~w~n~--pi~~HPDTg~~~sglq~PhW~~ll~LAa~c~el~GLGY~G---vD~VLDke~GPlvLELNA  268 (320)
T TIGR02291       194 GIDLATGKTLRAVWLNQ--PIEKHPDTGKDVSGLQVPHWEKLLKLAAECYELVGLGYLG---VDMVLDKEKGPLVLELNA  268 (320)
T ss_pred             EEECCCCCEEEEEECCC--CCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCCC---EEEEEECCCCCEEEEECC
T ss_conf             02311450321242067--6145838887535101667778999998775430676002---106874579881786447


Q ss_pred             CCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf             543320167886325620112322210222221133332012453302
Q gi|254780268|r  289 RLQVEHPVTEAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRI  336 (443)
Q Consensus       289 Rlqveh~vte~~tgvdlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri  336 (443)
                      |=           |     +.|+||.+.=|.       +|--.+|+|+
T Consensus       269 RP-----------G-----L~IQIAN~~Gl~-------~Rl~~~~a~L  293 (320)
T TIGR02291       269 RP-----------G-----LAIQIANDAGLL-------PRLKEVEAKL  293 (320)
T ss_pred             CC-----------C-----CHHHHHCCCCCC-------HHHHHHHHHC
T ss_conf             88-----------7-----212231314533-------6789999640


No 80 
>pfam05770 Ins134_P3_kin Inositol 1, 3, 4-trisphosphate 5/6-kinase. This family consists of several inositol 1, 3, 4-trisphosphate 5/6-kinase proteins. Inositol 1,3,4-trisphosphate is at a branch point in inositol phosphate metabolism. It is dephosphorylated by specific phosphatases to either inositol 3,4-bisphosphate or inositol 1,3-bisphosphate. Alternatively, it is phosphorylated to inositol 1,3,4,6-tetrakisphosphate or inositol 1,3,4,5-tetrakisphosphate by inositol trisphosphate 5/6-kinase.
Probab=97.43  E-value=0.0044  Score=42.29  Aligned_cols=173  Identities=10%  Similarity=0.236  Sum_probs=100.9

Q ss_pred             CCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCC-------CCCCCC-CHHHHHHH--HHCCCCHHHHHCCCCCC---CC
Q ss_conf             5921626898999872189988776642244332-------433345-57999873--20033012200023457---82
Q gi|254780268|r   98 HHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVV-------PGSGEV-YPHTAMPI--AKEIGFPVLVKASAGGG---GR  164 (443)
Q Consensus        98 ~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~-------p~~~~~-~~~ea~~~--a~~iGyPviiKp~~gGG---G~  164 (443)
                      -+++.|- ++++|+.+-||..+-+++.++.+...       +..... +.++..+.  .+.+.||++.||.-.-|   +.
T Consensus        77 P~v~viD-P~~ai~~L~dR~~m~~~v~~l~~~~~~~~v~~P~~v~i~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH  155 (307)
T pfam05770        77 PEVPVLD-PPPAIRRLHNRQSMLQVVADLNLSMEDGRFGVPPQVVVMKDASSLSRAGAKAGLTFPLIAKPLVADGTAKSH  155 (307)
T ss_pred             CCCEEEC-CHHHHHHHHCHHHHHHHHHHHCCCCCCCEEECCCEEEECCCHHHHHHHHHHCCCCCCEEECCHHCCCCCCCC
T ss_conf             9978977-999999987899999999981065679838369779972867788999997598676562330025785653


Q ss_pred             EEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE-EECCEEEEEECCCCCCC------CCCCCCCCC----CCC
Q ss_conf             1688875066899999875432125899816884434201-10331577734787023------656654211----356
Q gi|254780268|r  165 GMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENP-RHIEVQIFGDGMGNAIH------FGERDCSVQ----RRN  233 (443)
Q Consensus       165 Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~-rhiEvqVl~D~~g~~v~------l~erdCSiQ----rr~  233 (443)
                      -|.+|.+++.|.+.             +.++++.+||.+. .=.-|-|+||..- ++.      +.+.+++-.    +-|
T Consensus       156 ~Malvf~~~gL~~L-------------~pP~VlQefvNH~gvlfKvyVvGd~~~-vv~R~Slpn~~~~~~~~~~~~~~f~  221 (307)
T pfam05770       156 EMSLVYDQEGLNKL-------------QPPLVLQEFVNHGGVLFKVYVVGEHVT-VVKRRSLPDVSAGTLDRSSGSFRFS  221 (307)
T ss_pred             EEEEEECHHHHHCC-------------CCCEEEEEEECCCCEEEEEEEECCEEE-EEECCCCCCCCCCCCCCCCCCEECC
T ss_conf             47899777576227-------------997588987547867999999643789-9964677787733234656413310


Q ss_pred             C--EE------EE--ECC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--C-CCEEEEECCC
Q ss_conf             2--25------54--034-455889999999999999886515434102458972--8-8349982276
Q gi|254780268|r  234 Q--KI------WE--EAH-SPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE--N-GQFYFIEMNT  288 (443)
Q Consensus       234 q--ki------iE--eaP-ap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~--~-~~~yflEvN~  288 (443)
                      |  |.      -+  ..+ ...+++  ..-+.+.|..+-+++|. .+..++.+.+  . +++|++.+|-
T Consensus       222 ~vS~~~~~~~~~~~~~~~~~~~~p~--~~~~~~la~~LR~~lgL-~LFgfDvI~~~~t~~r~~VIDINy  287 (307)
T pfam05770       222 QVSNLTASADDAELDKILEIAEMPP--DPFLEDLARALRRALGL-RLFNFDIIRDAGTADRYLVIDINY  287 (307)
T ss_pred             CCCCCCCCCCHHHCCCCCCCCCCCC--HHHHHHHHHHHHHHCCC-EEECEEEEEECCCCCEEEEEEECC
T ss_conf             0467778862232135652023999--89999999999998099-496648999889898589999067


No 81 
>PRK12458 glutathione synthetase; Provisional
Probab=97.43  E-value=0.00094  Score=47.02  Aligned_cols=195  Identities=13%  Similarity=0.218  Sum_probs=109.8

Q ss_pred             HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC-HHHHHCCCCCCCCEEEEEEE
Q ss_conf             88984592162689899987218998877664224433243334557999873200330-12200023457821688875
Q gi|254780268|r   93 EILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF-PVLVKASAGGGGRGMRIAYS  171 (443)
Q Consensus        93 ~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGy-PviiKp~~gGGG~Gi~vv~~  171 (443)
                      ...++.|..+| -+|.+++.+-.|..+-++-+-.   +||-....+.++..+|.++... .+++||.+|-||.|+..++.
T Consensus       114 ~~~~~~gv~VI-N~P~slR~~nEKL~~~~Fp~~i---~P~TLVT~d~~~I~~F~~~~k~~~iIlKPL~G~GG~gIf~i~~  189 (349)
T PRK12458        114 RLAMRDGVLVL-NDPDGLRIANNKLYFQSFPEEV---RPTTHISRNREEIRAFLEESPSDKMILKPLQGSGGQGVFLIEK  189 (349)
T ss_pred             HHHHHCCCEEE-CCHHHHHCCCCHHHHHHCCCCC---CCCEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECC
T ss_conf             87650898898-1859986170120064155547---9877986799999999998158838986467888876388635


Q ss_pred             CH--HHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEE-EECCCCCCCCCCCCCCCCCCCCEE-----EE---EC
Q ss_conf             06--689999987543212589981688443420110331577-734787023656654211356225-----54---03
Q gi|254780268|r  172 EN--DLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIF-GDGMGNAIHFGERDCSVQRRNQKI-----WE---EA  240 (443)
Q Consensus       172 ~~--el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl-~D~~g~~v~l~erdCSiQrr~qki-----iE---ea  240 (443)
                      .+  .+...++...+       ++.|++.+||+..+.=..-|+ =|  |..+..-.+--++.|-.|+-     +.   .+
T Consensus       190 ~d~~Nl~~I~e~~~~-------~~~vm~Q~flpei~~GDkRIilin--Gepi~~~~~~gal~RiP~~gd~R~Nl~~GG~~  260 (349)
T PRK12458        190 SAESNLNQILEFYSG-------DGYVIAQEYIPGAEEGDVRILMLN--GEPLERDGRYAAMRRVPAEGDVRSNIHAGGTV  260 (349)
T ss_pred             CCHHHHHHHHHHHHC-------CCCEEEECCCHHCCCCCEEEEEEC--CEEECCCCCEEEEECCCCCCCHHHHHHCCCCC
T ss_conf             743419999999704-------881999921003416886999999--99911445413565356676135565268863


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCCCCCCCH----HHHHHHCCCCHHHHHH
Q ss_conf             4455889999999999999886515434102458972-883499822765433201----6788632562011232
Q gi|254780268|r  241 HSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHP----VTEAITGIDLVHEQIY  311 (443)
Q Consensus       241 Pap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~Rlqveh~----vte~~tgvdlv~~~~~  311 (443)
                      -+..|++..++    .+.+++..|.-.|+.=|=  +| =|. |+.|+|-    +.|    =-+..+|+|+...-+.
T Consensus       261 ~~~~Lt~~d~~----I~~~i~p~L~~~gl~fvG--iDvIG~-~LtEINV----TSPtgi~ei~~~~~~~~a~~~~d  325 (349)
T PRK12458        261 VKHTLTKEELE----LCEHIRPKLVRDGLFFVG--LDIVGD-KLIEVNV----FSPGGLGRINKLNNVDFSETIIN  325 (349)
T ss_pred             CCCCCCHHHHH----HHHHHHHHHHHCCCEEEE--EEEECC-CEEEECC----CCCHHHHHHHHHHCCCHHHHHHH
T ss_conf             03688999999----999999999987998999--986178-4568817----89602999987519986999999


No 82 
>pfam11379 DUF3182 Protein of unknown function (DUF3182). This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=97.39  E-value=0.00031  Score=50.45  Aligned_cols=162  Identities=22%  Similarity=0.295  Sum_probs=95.1

Q ss_pred             HCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEE
Q ss_conf             80965999858557718776758579991899853000698999999987099899458531310976668898459216
Q gi|254780268|r   23 ELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKF  102 (443)
Q Consensus        23 elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~f  102 (443)
                      -+|.+...-|.+++....      ..|++|..+     |    +-.-|.+.|+...+-=||=.-+-+=.|.+.....+  
T Consensus        29 L~G~~~~g~~~~~~~~~~------~~Y~vP~~T-----L----v~~~A~~LGI~g~~DLfGGvVph~FvATKaItHpL--   91 (355)
T pfam11379        29 LLGLRFAGAYDPPDHGPG------PPYLVPTDT-----L----VGAQARELGVRGPQDLFGGVVPHAFVATKAITHPL--   91 (355)
T ss_pred             HCCCCCCCCCCCCCCCCC------CEEECCCCC-----C----CHHHHHHCCCCCHHHCCCCCCCCCHHEEHHHCCCC--
T ss_conf             539975776784335788------547766742-----0----02348764898777645776674020001204768--


Q ss_pred             ECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC--CCHHHHHCCCCCCCCEEEEEEECHHHHHHHH
Q ss_conf             26898999872189988776642244332433345579998732003--3012200023457821688875066899999
Q gi|254780268|r  103 IGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEI--GFPVLVKASAGGGGRGMRIAYSENDLSEAID  180 (443)
Q Consensus       103 IGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~i--GyPviiKp~~gGGG~Gi~vv~~~~el~~a~~  180 (443)
                        |.+.+..-.|   ....++.+..--+.||+++-+.+++..++..+  +-||-+||..+.||+|++++.+.++|..++.
T Consensus        92 --~~~~a~aP~G---Ws~~F~~~v~~~vLpG~tvFs~~DAr~Aa~~Ll~~G~VRlK~~~a~gG~GQ~vv~d~~~Le~~L~  166 (355)
T pfam11379        92 --PRPDAVAPAG---WSRAFAARVRDAVLPGYTVFSLEDARDAAARLLKGGPVRLKPPRACGGRGQQVVADADALDAALA  166 (355)
T ss_pred             --CCCCCCCCCC---CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEECCHHHHHHHHH
T ss_conf             --8865569987---47999998762103873222678899999998537972550562237888557438999999987


Q ss_pred             HHHHHHHCCCCCCCEEEEEEEEEEEECCE
Q ss_conf             87543212589981688443420110331
Q gi|254780268|r  181 QARSEALAAFGNDAVYIEKYLENPRHIEV  209 (443)
Q Consensus       181 ~a~~ea~~~fgd~~vlvEk~i~~~rhiEv  209 (443)
                      ..-......   ..+.+|+.++.+--..|
T Consensus       167 a~~~~~l~~---~GlVLE~~L~~~~TySV  192 (355)
T pfam11379       167 ALDDRELAA---HGLVLEEDLDQPTTYSV  192 (355)
T ss_pred             CCCHHHHHH---CCEEEECCCCCCCEEEE
T ss_conf             279888986---68687402577722555


No 83 
>pfam03133 TTL Tubulin-tyrosine ligase family. Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypep
Probab=96.85  E-value=0.013  Score=38.90  Aligned_cols=44  Identities=32%  Similarity=0.559  Sum_probs=34.7

Q ss_pred             CCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
Q ss_conf             3012200023457821688875066899999875432125899816884434201
Q gi|254780268|r  150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENP  204 (443)
Q Consensus       150 GyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~  204 (443)
                      +---++||..|.-|+||.++++.+++....+           +++.+|.|||+.|
T Consensus        66 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~-----------~~~~VvQkYI~~P  109 (291)
T pfam03133        66 RNTWIVKPSASARGRGIRITNDLSQILKQIQ-----------SRPLVVQKYIERP  109 (291)
T ss_pred             CCEEEEEECCCCCCCCEEEECCHHHHHHHHC-----------CCCEEEEECCCCC
T ss_conf             9769991177689899698379999766523-----------7988975205775


No 84 
>KOG3895 consensus
Probab=96.55  E-value=0.027  Score=36.67  Aligned_cols=202  Identities=16%  Similarity=0.143  Sum_probs=117.3

Q ss_pred             HHHCCCCEEECCCCHHH--CCHHH---HHHHHHCCCEEECCCHHHHHHHHCHHH----HHHHHHHCC---CCCCCCCCCC
Q ss_conf             98709989945853131--09766---688984592162689899987218998----877664224---4332433345
Q gi|254780268|r   70 CEVTGADAIHPGYGFLS--ENAKF---AEILEDHHIKFIGPSSEHIKIMGDKIT----AKKTAQQLG---IPVVPGSGEV  137 (443)
Q Consensus        70 a~~~~~daihPGyGfLs--En~~f---a~~~e~~Gi~fIGPs~~ai~~~gDK~~----~k~~a~~~G---VP~~p~~~~~  137 (443)
                      .+....|+|+-+.+..|  +|.+|   ...+.-+||+++ -|-.++-.+-||-.    .+++..++|   +|.++-+...
T Consensus       151 ~RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yP  229 (488)
T KOG3895         151 VRSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYP  229 (488)
T ss_pred             EEECCCCEEEECCCCHHHCCCCCHHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEECC
T ss_conf             431267778870530101013106899998876378642-0267898861456899999999875185445544001068


Q ss_pred             CHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCC
Q ss_conf             57999873200330122000234578216888750668999998754321258998168844342011033157773478
Q gi|254780268|r  138 YPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMG  217 (443)
Q Consensus       138 ~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g  217 (443)
                      +-.+-+.   .--||++||--.+-.|.|--+|.|.+|+.+. +......+     ..+-+|.||+.--.|-||-+|..|-
T Consensus       230 nHK~m~s---~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi-~svval~~-----Tyat~epFiDaKYDiriQKIG~nYK  300 (488)
T KOG3895         230 NHKEMLS---QPTYPVVVKVGHAHSGMGKIKVENHEDFQDI-ASVVALTK-----TYATAEPFIDAKYDIRIQKIGHNYK  300 (488)
T ss_pred             CCHHHCC---CCCCCEEEEECCCCCCCCEEEECCHHHHHHH-HHHHHHHH-----HHHCCCCCCCCCCEEEHHHHHHHHH
T ss_conf             7442214---8877679982543356532552341556769-99999886-----2320023434322001565404688


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCH-HHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCC
Q ss_conf             702365665421135622554034455889-999999999999886515434102458972-883499822765
Q gi|254780268|r  218 NAIHFGERDCSVQRRNQKIWEEAHSPVISA-QDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTR  289 (443)
Q Consensus       218 ~~v~l~erdCSiQrr~qkiiEeaPap~l~~-~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~R  289 (443)
                      ..+-   +  ||-. |=|-  ..-+..|.. ..-++-.-+...+-+.+|-.-.+.|+-+.. +|+=|++|||--
T Consensus       301 aymR---t--sIsg-nWKt--NtGSamLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d~  366 (488)
T KOG3895         301 AYMR---T--SISG-NWKT--NTGSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMDS  366 (488)
T ss_pred             HHHH---H--HHCC-CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHEEEECCC
T ss_conf             8866---5--3126-7545--72089999998778899999989976288324665421056550232431235


No 85 
>pfam02844 GARS_N Phosphoribosylglycinamide synthetase, N domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam00289).
Probab=96.44  E-value=0.053  Score=34.61  Aligned_cols=93  Identities=16%  Similarity=0.228  Sum_probs=62.1

Q ss_pred             EEEEECCCHHHHHHHHHHHHC--CCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf             686644709999999988880--965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r    4 KILIANRGEIALRILRACKEL--GIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG   81 (443)
Q Consensus         4 ~iLianrGeia~riira~~el--Gi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG   81 (443)
                      ||||.+.|-=---+++++++-  .-+..+.-.++-.    ...+ +.+.+       +..|.+.|++.|+++++|.+..|
T Consensus         1 kILvIGsGgREHAi~~~l~~s~~~~~l~~~pgN~gi----~~~~-~~~~i-------~~~d~~~i~~~~~~~~idlviiG   68 (99)
T pfam02844         1 KVLVVGSGGREHALAWKLAQSPRVEKVYVAPGNPGT----AQLA-KNVNI-------DITDFEALADFAKEENIDLVVVG   68 (99)
T ss_pred             CEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCHH----HHHC-EEECC-------CCCCHHHHHHHHHHCCCCEEEEC
T ss_conf             989987887999999999649997769995898157----7747-50145-------84479999999998197499989


Q ss_pred             CCHHHCCH---HHHHHHHHCCCEEECCCHHHHHH
Q ss_conf             53131097---66688984592162689899987
Q gi|254780268|r   82 YGFLSENA---KFAEILEDHHIKFIGPSSEHIKI  112 (443)
Q Consensus        82 yGfLsEn~---~fa~~~e~~Gi~fIGPs~~ai~~  112 (443)
                      -    |++   .++..+++.|+..+||+.++.++
T Consensus        69 P----E~pL~~Gl~D~l~~~gi~vfGP~k~aA~L   98 (99)
T pfam02844        69 P----EAPLVAGIVDALRAAGIPVFGPSKAAARL   98 (99)
T ss_pred             C----CHHHHHHHHHHHHHCCCEEECCCHHHHHC
T ss_conf             6----06778788999986899179928688736


No 86 
>pfam02750 Synapsin_C Synapsin, ATP binding domain. Ca dependent ATP binding in this ATP grasp fold. Function unknown.
Probab=96.44  E-value=0.046  Score=35.02  Aligned_cols=149  Identities=17%  Similarity=0.183  Sum_probs=88.7

Q ss_pred             HHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf             42244332433345579998732003301220002345782168887506689999987543212589981688443420
Q gi|254780268|r  124 QQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLEN  203 (443)
Q Consensus       124 ~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~  203 (443)
                      -+-..|.++-+.-++..+-.   -.-.||+++|--.+-+|.|--.|.|..++.+..-..   +..   ..-+-.|.||+.
T Consensus        27 G~e~FPLIeQtyypn~kem~---~~~~fPvVvKvGhah~G~GKvkven~~~fqD~~s~v---a~~---~~y~T~EPfid~   97 (203)
T pfam02750        27 GAEKFPLIEQTYYPNHKEML---TTPTFPVVVKIGHAHSGMGKVKVDNHHDFQDIASVV---ALT---KTYATTEPFIDS   97 (203)
T ss_pred             CCCCCCCCEEECCCCHHHHC---CCCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHH---HHC---CCEEEECCCCCC
T ss_conf             86667753000269877742---588988899975415623589960777888887577---213---635886145454


Q ss_pred             EEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCH-HHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCE
Q ss_conf             11033157773478702365665421135622554034455889-999999999999886515434102458972-8834
Q gi|254780268|r  204 PRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISA-QDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQF  281 (443)
Q Consensus       204 ~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEeaPap~l~~-~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~  281 (443)
                      --.|-+|-+|+.+-   + +.|- |+-.+ =|-  -.-+..|.+ +..++-..+.-...+.+|-.-.+.||-+.. +|+-
T Consensus        98 kyDiriQKIG~~yk---a-y~R~-sISgn-WK~--NtGSamLEqi~mteryK~WvD~~S~lFGGLdIcav~ai~~KdGke  169 (203)
T pfam02750        98 KYDIRVQKIGNNYK---A-YMRT-SISGN-WKA--NTGSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVEALHGKDGRD  169 (203)
T ss_pred             CEEEEEEEHHHHHH---H-HEEC-CCCCC-CCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCE
T ss_conf             25588520000447---6-6122-00378-544--703788865023689999999999873893079998777688875


Q ss_pred             EEEECCCC
Q ss_conf             99822765
Q gi|254780268|r  282 YFIEMNTR  289 (443)
Q Consensus       282 yflEvN~R  289 (443)
                      |.+|||--
T Consensus       170 yIiEvnds  177 (203)
T pfam02750       170 YIIEVMDS  177 (203)
T ss_pred             EEEEECCC
T ss_conf             68996265


No 87 
>pfam06849 DUF1246 Protein of unknown function (DUF1246). This family represents the N-terminus of a number of hypothetical archaeal proteins of unknown function.
Probab=95.80  E-value=0.062  Score=34.09  Aligned_cols=109  Identities=19%  Similarity=0.273  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHCCCEEEEECCCHHHCC--CCHHHCCEEEECCCCCCCCHHCCHH--HHHHHHHHCCCCEEECCCCHHHCC
Q ss_conf             999999988880965999858557718--7767585799918998530006989--999999870998994585313109
Q gi|254780268|r   13 IALRILRACKELGIPTVAVHSTADSGA--MHVRLADESVCIGPPSSKDSYLNIQ--QIVAACEVTGADAIHPGYGFLSEN   88 (443)
Q Consensus        13 ia~riira~~elGi~tv~v~s~~D~~a--~~~~~ADe~~~i~~~~~~~sYldi~--~ii~~a~~~~~daihPGyGfLsEn   88 (443)
                      -|+.|++-||+.|.+|++|... .+.-  .....+||.+.+.      +|-|+-  .+-+--++.++--|.-|.  +.+-
T Consensus         8 SALqIl~GAK~EGF~Tv~vc~~-gr~~~Y~~f~~~De~iv~d------~f~di~~~~~q~~L~~~N~I~IPhgS--fv~Y   78 (124)
T pfam06849         8 SALQILDGAKDEGFRTVAVCQK-GREKFYRRFPFVDEFIVVD------KFKDILDEEVQQKLRENNAIFIPHGS--FVAY   78 (124)
T ss_pred             HHHHHHHHHHHCCCCEEEEEEC-CCCCHHHHCCCCCEEEEEC------CHHHHHHHHHHHHHHHCCEEEECCCC--EEEE
T ss_conf             3989972388739957899817-9752133268673799956------58998729999999988979974888--4676


Q ss_pred             HHHHHHHH-HCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCC
Q ss_conf             76668898-459216268989998721899887766422443324
Q gi|254780268|r   89 AKFAEILE-DHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVP  132 (443)
Q Consensus        89 ~~fa~~~e-~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p  132 (443)
                      .. .+.+| +..+++.| +-.-++-..|+..-+++++++|+|.|.
T Consensus        79 ~G-~~~ie~~~~VP~FG-NR~lLrwEseR~~~~~lLe~Agi~~Pk  121 (124)
T pfam06849        79 VG-YDRVENEFKVPIFG-NRNLLRWESERDKERKLLEKAGIRYPK  121 (124)
T ss_pred             EC-HHHHHHCCCCCEEC-CHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             55-89986027887004-788888765367799999976999983


No 88 
>TIGR01380 glut_syn glutathione synthase; InterPro: IPR006284   These are the glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions. ; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process.
Probab=95.71  E-value=0.019  Score=37.83  Aligned_cols=246  Identities=19%  Similarity=0.346  Sum_probs=134.7

Q ss_pred             HHHHHHHHHCCCEEEEECCCHHHCCCCHHH--CC-EEEECCCCCCC-------CHHCCHHHHHHHHHHCCCCEEE----C
Q ss_conf             999998888096599985855771877675--85-79991899853-------0006989999999870998994----5
Q gi|254780268|r   15 LRILRACKELGIPTVAVHSTADSGAMHVRL--AD-ESVCIGPPSSK-------DSYLNIQQIVAACEVTGADAIH----P   80 (443)
Q Consensus        15 ~riira~~elGi~tv~v~s~~D~~a~~~~~--AD-e~~~i~~~~~~-------~sYldi~~ii~~a~~~~~daih----P   80 (443)
                      +.++..++..|-+.--.  .++..|.....  |+ .++.+.|....       ..+...-.--..+....+|+|+    |
T Consensus        21 ~alm~EaQ~RgH~~f~~--~~~~Ls~~~G~~~A~~~~~~~~pv~~~~~~WQv~~~w~~~~~~~~~~L~d~~d~vlMRkDP   98 (322)
T TIGR01380        21 FALMEEAQKRGHELFFY--EPGDLSVKNGRVFARAAPVKVLPVQLDDDRWQVKQDWYTLGEKVRLALKDELDVVLMRKDP   98 (322)
T ss_pred             HHHHHHHHHCCCEEEEE--ECCCEEEECCHHHEEEEEEEEEEEEECCCCCEECHHHHHHHHHHHHCCCCCCCEEEECCCC
T ss_conf             99998985469389998--4361111023111002106686058718801011278887665420113574299984750


Q ss_pred             CCCHHHCCHHH------HHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCCHH
Q ss_conf             85313109766------6889845921626898999872189988776642244332433345-5799987320033012
Q gi|254780268|r   81 GYGFLSENAKF------AEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV-YPHTAMPIAKEIGFPV  153 (443)
Q Consensus        81 GyGfLsEn~~f------a~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~-~~~ea~~~a~~iGyPv  153 (443)
                      -+     |.+|      =+.++..|+..| -+|+++|.+--|..+-.+..     +.|=+.++ +..+...|.+++| =+
T Consensus        99 Pf-----~~~Y~yaT~lLe~~~~~g~~vi-N~P~~lRd~NEKl~~~~Fp~-----~~ppTLvt~~~~~ir~F~~e~~-di  166 (322)
T TIGR01380        99 PF-----DMEYIYATYLLELAEPTGTLVI-NSPQGLRDANEKLFALQFPK-----VIPPTLVTRDKAEIRAFLAEHG-DI  166 (322)
T ss_pred             CC-----CHHHHHHHHHHHHHHHCCCEEE-ECCCHHHCCCHHHHHHCCCC-----CCCCCCEECCHHHHHHHHHHHH-CE
T ss_conf             98-----6315446778877842796798-48823224660345433412-----3588501067799999998751-25


Q ss_pred             HHHCCCCCCCCEEEEEEE-CHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC--EEEEEECC--CCCC--------
Q ss_conf             200023457821688875-0668999998754321258998168844342011033--15777347--8702--------
Q gi|254780268|r  154 LVKASAGGGGRGMRIAYS-ENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE--VQIFGDGM--GNAI--------  220 (443)
Q Consensus       154 iiKp~~gGGG~Gi~vv~~-~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE--vqVl~D~~--g~~v--------  220 (443)
                      ||||-+|.||.|+..... .-++...++...+     .+..+|++.+||+...|=-  |-++ ||.  |.|+        
T Consensus       167 vLKPL~g~GG~gi~Rl~~~DpN~~~i~E~~~~-----~g~~~~~aQ~ylpei~~GDKRilL~-~G~Pig~a~~Rip~~gE  240 (322)
T TIGR01380       167 VLKPLDGMGGEGIFRLDPGDPNLNSILETLTQ-----LGREPVMAQRYLPEIKEGDKRILLI-DGEPIGYAVARIPAGGE  240 (322)
T ss_pred             EECCCCCCCCCEEEEECCCCCCHHHHHHHHHH-----CCCCEEEEEECHHHHHHCCCEEEEE-CCEECCCCEEECCCCCC
T ss_conf             87266677784367617899855689888765-----2671687650205766179659997-88350010140278875


Q ss_pred             -----CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--C-CCCEEEEECCCCCCC
Q ss_conf             -----36566542113562255403445588999999999999988651543410245897--2-883499822765433
Q gi|254780268|r  221 -----HFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY--E-NGQFYFIEMNTRLQV  292 (443)
Q Consensus       221 -----~l~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~--~-~~~~yflEvN~Rlqv  292 (443)
                           ..|.|              +-|..||+..++    .|..++=.|.-+|+    +++  | =|+ |+.|||    |
T Consensus       241 ~RgNlavGG~--------------~~a~~L~~rD~e----Ic~~~~P~L~~rGl----~fvGiDVIG~-~LTEvN----V  293 (322)
T TIGR01380       241 FRGNLAVGGR--------------GEAQELSERDRE----ICATVAPELKRRGL----LFVGIDVIGG-YLTEVN----V  293 (322)
T ss_pred             CCHHHCCCCE--------------EEECCCCHHHHH----HHHHHCCCCCCCCE----EEEEEEEECC-CCEEEE----C
T ss_conf             0002002886--------------220026678999----99871610020774----7975467778-007983----1


Q ss_pred             CCHH----HHHHHCCCCHH
Q ss_conf             2016----78863256201
Q gi|254780268|r  293 EHPV----TEAITGIDLVH  307 (443)
Q Consensus       293 eh~v----te~~tgvdlv~  307 (443)
                      +.|-    -+..+|+++-+
T Consensus       294 TSPTGi~Ei~~~~G~~~~~  312 (322)
T TIGR01380       294 TSPTGIREIDRQKGVNIAE  312 (322)
T ss_pred             CCCHHHHHHHHHCCCCHHH
T ss_conf             4645689887635855899


No 89 
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=95.58  E-value=0.11  Score=32.31  Aligned_cols=45  Identities=20%  Similarity=0.366  Sum_probs=37.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCC
Q ss_conf             45588999999999999988651543410245897288349982276
Q gi|254780268|r  242 SPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNT  288 (443)
Q Consensus       242 ap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~  288 (443)
                      .|.|++++..++.+.+.++-+..|+  ---|||.+++|++|+|-.=|
T Consensus       263 ~~~L~d~~i~~La~l~~~iE~~fG~--PQDIEWa~~~g~l~iLQaRP  307 (870)
T PRK06241        263 SQTLTDEQILQLAELGRKIEAHFGC--PQDIEWCLADGQFYILQSRP  307 (870)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCC--CCCCCEEEECCEEEEEEECC
T ss_conf             8999999999999999999998389--64410156588799997256


No 90 
>PRK06988 putative formyltransferase; Provisional
Probab=93.56  E-value=0.19  Score=30.68  Aligned_cols=39  Identities=15%  Similarity=0.244  Sum_probs=36.5

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCC
Q ss_conf             970686644709999999988880965999858557718
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGA   39 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a   39 (443)
                      |-.||...+..++|+...+++.+.|++.++|+|.||+.+
T Consensus         1 m~~rivf~Gtp~fav~~L~~L~~~~~~v~~VvTqpD~p~   39 (313)
T PRK06988          1 MKPRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNPT   39 (313)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             986199979988999999999978996799989989976


No 91 
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.44  E-value=0.75  Score=26.43  Aligned_cols=164  Identities=16%  Similarity=0.130  Sum_probs=89.4

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCHHHCCCCHHHC---CEEEECCCCCCCCHHCCHHHHHHHHHHCCCCE
Q ss_conf             706866447099999999888809-65999858557718776758---57999189985300069899999998709989
Q gi|254780268|r    2 ISKILIANRGEIALRILRACKELG-IPTVAVHSTADSGAMHVRLA---DESVCIGPPSSKDSYLNIQQIVAACEVTGADA   77 (443)
Q Consensus         2 ~~~iLianrGeia~riira~~elG-i~tv~v~s~~D~~a~~~~~A---De~~~i~~~~~~~sYldi~~ii~~a~~~~~da   77 (443)
                      |++|||.+-|-|+-.+++.|-.-| .+..+....++..+.-....   =++..+.       -.|.+++.++.++.  |+
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD-------~~d~~al~~li~~~--d~   71 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD-------AADVDALVALIKDF--DL   71 (389)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEC-------CCCHHHHHHHHHCC--CE
T ss_conf             9728998986667999999985789629998488889999875334663169942-------56758899987257--78


Q ss_pred             EE-CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC---CHHHHHHHHHCCC-CH
Q ss_conf             94-5853131097666889845921626898999872189988776642244332433345---5799987320033-01
Q gi|254780268|r   78 IH-PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV---YPHTAMPIAKEIG-FP  152 (443)
Q Consensus        78 ih-PGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~---~~~ea~~~a~~iG-yP  152 (443)
                      |. -+-+|+  +..+.++|.++|+.++=.+-..-    +....+..++++|+-.+++....   +.--+..+++++. =.
T Consensus        72 VIn~~p~~~--~~~i~ka~i~~gv~yvDts~~~~----~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~~~i  145 (389)
T COG1748          72 VINAAPPFV--DLTILKACIKTGVDYVDTSYYEE----PPWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELFDEI  145 (389)
T ss_pred             EEEECCCHH--HHHHHHHHHHHCCCEEECCCCCC----HHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             999287054--29999999985998897546775----065654898874907971667686457999999999861656


Q ss_pred             HHHHCCCCCC------CCEEEEEEECHHHHHHHH
Q ss_conf             2200023457------821688875066899999
Q gi|254780268|r  153 VLVKASAGGG------GRGMRIAYSENDLSEAID  180 (443)
Q Consensus       153 viiKp~~gGG------G~Gi~vv~~~~el~~a~~  180 (443)
                      .=+.-..|+.      .++-..-++++.+...+.
T Consensus       146 ~si~iy~g~~g~~~~~~l~ya~tws~e~~l~e~~  179 (389)
T COG1748         146 ESIDIYVGGLGEHGDNPLGYATTWSPEINLREYT  179 (389)
T ss_pred             CEEEEEEECCCCCCCCCCCCEEEECHHHHHHHHC
T ss_conf             4899998258989887765326625788689754


No 92 
>PRK09248 putative hydrolase; Validated
Probab=93.26  E-value=0.36  Score=28.68  Aligned_cols=16  Identities=25%  Similarity=0.281  Sum_probs=10.6

Q ss_pred             HHHHHHHHCCCEEEEE
Q ss_conf             9999888809659998
Q gi|254780268|r   16 RILRACKELGIPTVAV   31 (443)
Q Consensus        16 riira~~elGi~tv~v   31 (443)
                      ..+++|+++|++.+++
T Consensus        23 E~~~aA~~~Gl~~i~i   38 (246)
T PRK09248         23 ENAAEAKQKGIKLFAI   38 (246)
T ss_pred             HHHHHHHHCCCCEEEE
T ss_conf             9999999869968998


No 93 
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=93.19  E-value=0.25  Score=29.84  Aligned_cols=140  Identities=11%  Similarity=0.090  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCC-HHCCHHHHHHHHH----HCCCCEEECCCCHHHC
Q ss_conf             9999999888809659998585577187767585799918998530-0069899999998----7099899458531310
Q gi|254780268|r   13 IALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKD-SYLNIQQIVAACE----VTGADAIHPGYGFLSE   87 (443)
Q Consensus        13 ia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~-sYldi~~ii~~a~----~~~~daihPGyGfLsE   87 (443)
                      +..|..+.|.++|+.+|++....|..+.......+.+.+.--...+ ...|...+-..++    +..+-+||||=    |
T Consensus        20 t~~ela~~A~~lGy~~iait~h~d~~~~~~~~~~~~~~i~v~~gvei~~~dp~~~~~l~~k~r~~~dIv~V~g~~----~   95 (237)
T PRK00912         20 TVLELAEEASHLGFSGICLSYHSDKYPDLKSILPETEDFEIFRGVEIVEENPSKLRGLVGKFRKKVDVLIVHGGD----E   95 (237)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEECCC----H
T ss_conf             799999999986986899806753335433335777785688567997249788778899885248789994787----2


Q ss_pred             CHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCC----CCCCCC---------CCHHHHHHHHHCCCCHHH
Q ss_conf             9766688984592162689899987218998877664224433----243334---------557999873200330122
Q gi|254780268|r   88 NAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPV----VPGSGE---------VYPHTAMPIAKEIGFPVL  154 (443)
Q Consensus        88 n~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~----~p~~~~---------~~~~ea~~~a~~iGyPvi  154 (443)
                       ..+-.+|+...+-.|.-+...-.-.+-+...-+.|.+.||-.    -|....         .+.......+++.|+|++
T Consensus        96 -~~nr~A~e~~~VDIL~~p~~~r~~~~~~hv~ak~A~e~gV~lEI~~~~~l~~~~~~R~~~i~n~~~l~~l~r~yg~piv  174 (237)
T PRK00912         96 -KVNRAACENPRVDILNHPYLNRKDSGLNHVLAKLAAENNVAIEIILRDILHSRGGRRARTLSQIRANLALHRKYDFPLV  174 (237)
T ss_pred             -HHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             -8899987268987884654346886633899999997490799965244336721689999879999999986699889


Q ss_pred             HHC
Q ss_conf             000
Q gi|254780268|r  155 VKA  157 (443)
Q Consensus       155 iKp  157 (443)
                      |-.
T Consensus       175 isS  177 (237)
T PRK00912        175 LSS  177 (237)
T ss_pred             EEC
T ss_conf             967


No 94 
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.08  E-value=0.84  Score=26.06  Aligned_cols=169  Identities=17%  Similarity=0.150  Sum_probs=93.7

Q ss_pred             EEEE-ECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC-C
Q ss_conf             6866-4470999999998888096599985855771877675857999189985300069899999998709989945-8
Q gi|254780268|r    4 KILI-ANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP-G   81 (443)
Q Consensus         4 ~iLi-anrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP-G   81 (443)
                      +||| -.-|-+..+++|.+.+.|+++.++.-+++....-....-+.+. +      .+.|.+.+..+.  .|+|+|.- +
T Consensus         2 ~ILV~GATG~lGr~vVr~Ll~~G~~Vr~lvRnp~ka~~l~~~Gve~v~-g------Dl~dpesl~~Al--~GvdaVi~~~   72 (319)
T CHL00194          2 SLLVIGATGTLGRQIVRRALDEGYQVKCLVRNLRKAAFLKEWGAELVY-G------DLSLPETIPPAL--EGITAIIDAS   72 (319)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEE-E------CCCCHHHHHHHH--CCCCEEEEEC
T ss_conf             799989985899999999996889089995786763234215967999-4------278877899996--5996799945


Q ss_pred             CCHHH-----CC------HHHHHHHHHCCCE-EE-----CCCH-HHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf             53131-----09------7666889845921-62-----6898-999872189988776642244332433345579998
Q gi|254780268|r   82 YGFLS-----EN------AKFAEILEDHHIK-FI-----GPSS-EHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAM  143 (443)
Q Consensus        82 yGfLs-----En------~~fa~~~e~~Gi~-fI-----GPs~-~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~  143 (443)
                      ...-+     ++      ..+.++|+++|+. ||     |... .....+..|...-+.+++.|+|.   +..--..-..
T Consensus        73 ~~~~~~~~~~~~vd~~g~~~li~AAk~aGVkr~V~lS~lga~~~~~~p~~~~K~~~E~~L~~Sgl~~---TIlRPs~F~q  149 (319)
T CHL00194         73 TSRPSDLNNAYQIDLEGKLALIEAAKAAKVKRFIFFSILNAEQYPQVPLMKIKSDIEEKLKQSGINY---TIFRLAGFFQ  149 (319)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCE---EEECCHHHHH
T ss_conf             6677886208898898899999999984998899961356666887567787999999998679985---9984739999


Q ss_pred             HHHHCCCCHHHHH-CCCCCCCCE-EEEEEECHHHHHHHHHHHHH
Q ss_conf             7320033012200-023457821-68887506689999987543
Q gi|254780268|r  144 PIAKEIGFPVLVK-ASAGGGGRG-MRIAYSENDLSEAIDQARSE  185 (443)
Q Consensus       144 ~~a~~iGyPviiK-p~~gGGG~G-i~vv~~~~el~~a~~~a~~e  185 (443)
                      .+..++..|++-+ |..+.|+.+ +..+ +.+|+.++.-.+...
T Consensus       150 ~l~~~~a~pi~~~~~v~~~~~~~~ia~I-~~~DVA~~~a~aL~~  192 (319)
T CHL00194        150 GLISQYAIPILDSQTIWITGESTPIAYI-DTQDAAKFALKSLSL  192 (319)
T ss_pred             HHHHHHHHHHHCCCCEEECCCCCCCCCC-CHHHHHHHHHHHHCC
T ss_conf             8899876776307857766998752887-799999999999589


No 95 
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN.  NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively.  NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein.  NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=93.06  E-value=0.76  Score=26.37  Aligned_cols=15  Identities=20%  Similarity=0.220  Sum_probs=5.8

Q ss_pred             HHHHHHHHHCCCCEE
Q ss_conf             999999987099899
Q gi|254780268|r   64 QQIVAACEVTGADAI   78 (443)
Q Consensus        64 ~~ii~~a~~~~~dai   78 (443)
                      +.|.++.++.+.+.|
T Consensus        76 ~~I~~~~~~~~P~~I   90 (410)
T cd01968          76 KAILEIIERYHPKAV   90 (410)
T ss_pred             HHHHHHHHHCCCCEE
T ss_conf             999999985499889


No 96 
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=92.51  E-value=0.95  Score=25.69  Aligned_cols=113  Identities=20%  Similarity=0.357  Sum_probs=77.8

Q ss_pred             CCCHHCCHHHHHHHHHHCCCCEE--ECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCC
Q ss_conf             53000698999999987099899--4585313109766688984592162689899987218998877664224433243
Q gi|254780268|r   56 SKDSYLNIQQIVAACEVTGADAI--HPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPG  133 (443)
Q Consensus        56 ~~~sYldi~~ii~~a~~~~~dai--hPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~  133 (443)
                      ..+.|+|++..++-.++.|.-+|  +|..|..  +..|.+.+|+.|+-|    ..-       +.+-+.|.+.++.+.|+
T Consensus        90 ~tDP~~~~~~~L~~l~~~GfsGV~NfPTvgli--dG~fR~~LEetGmgy----~~E-------VEmIr~A~~~dl~T~~y  156 (268)
T pfam09370        90 GTDPFRDMDRFLDELKEMGFAGVQNFPTVGLI--DGEFRQNLEETGMGY----DLE-------VEMIRLAHEKGLLTTPY  156 (268)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCEEECCCEEEE--CCHHHHHHHHCCCCH----HHH-------HHHHHHHHHCCCCCCCE
T ss_conf             88974529999999997197744438822033--518887788808867----999-------99999999779833313


Q ss_pred             CCCCCHHHHHHHHHCCCCHHHHH--CCCCCCCCEEEEEEECHHHHHHHHHHHH
Q ss_conf             33455799987320033012200--0234578216888750668999998754
Q gi|254780268|r  134 SGEVYPHTAMPIAKEIGFPVLVK--ASAGGGGRGMRIAYSENDLSEAIDQARS  184 (443)
Q Consensus       134 ~~~~~~~ea~~~a~~iGyPviiK--p~~gGGG~Gi~vv~~~~el~~a~~~a~~  184 (443)
                      .  -+.+++.+.+ +-|--+++-  ..-.||..|.....+.+|-.+..+....
T Consensus       157 v--f~~e~a~~Ma-~AGaDiIv~H~GlT~gG~iG~~~a~sl~~a~~~~~~i~~  206 (268)
T pfam09370       157 V--FNVEEARAMA-EAGADIIVAHMGLTTGGTIGADTALSLDDCVELINAIAR  206 (268)
T ss_pred             E--CCHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             2--6899999999-749989997677677767467776789999999999999


No 97 
>KOG2799 consensus
Probab=92.49  E-value=0.45  Score=27.99  Aligned_cols=72  Identities=26%  Similarity=0.418  Sum_probs=53.7

Q ss_pred             HHHHC-HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC-HHHHHCCCCCCC-----------CEEEEEEECHHHHH
Q ss_conf             87218-998877664224433243334557999873200330-122000234578-----------21688875066899
Q gi|254780268|r  111 KIMGD-KITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF-PVLVKASAGGGG-----------RGMRIAYSENDLSE  177 (443)
Q Consensus       111 ~~~gD-K~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGy-PviiKp~~gGGG-----------~Gi~vv~~~~el~~  177 (443)
                      +.+++ -.+..+++++.|+.+++++...+++|+.++++++|- -++||+-.-.||           .|+++|.+++|.++
T Consensus        21 r~L~~hey~~~~ll~~~Gv~vp~g~vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~  100 (434)
T KOG2799          21 RSLGIHEYRSAALLRKYGINVPLGYVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKA  100 (434)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHH
T ss_conf             43468998899999971878887755688789999999708864599752010576667737676786379767588888


Q ss_pred             HHHHH
Q ss_conf             99987
Q gi|254780268|r  178 AIDQA  182 (443)
Q Consensus       178 a~~~a  182 (443)
                      .-.+.
T Consensus       101 va~qm  105 (434)
T KOG2799         101 VASQM  105 (434)
T ss_pred             HHHHH
T ss_conf             89976


No 98 
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH.    FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=92.35  E-value=0.09  Score=32.97  Aligned_cols=94  Identities=24%  Similarity=0.373  Sum_probs=61.5

Q ss_pred             CCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHH
Q ss_conf             59216268989998721899887766422443324333455799987320033012200023457821688875066899
Q gi|254780268|r   98 HHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSE  177 (443)
Q Consensus        98 ~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~  177 (443)
                      .|+..+||+-     +|==..||.+|=+||||   |...+=++-..=|+                |.|=+.|+      +
T Consensus        93 KGVLLvGPPG-----TGKTLLAKAvAGEA~VP---FF~iSGSdFVEMFV----------------GVGASRVR------D  142 (505)
T TIGR01241        93 KGVLLVGPPG-----TGKTLLAKAVAGEAGVP---FFSISGSDFVEMFV----------------GVGASRVR------D  142 (505)
T ss_pred             CCEEEECCCC-----CCHHHHHHHHHCCCCCC---CEEECCCCEEECCC----------------CCCCEEHH------H
T ss_conf             7147317878-----42467887520258896---24740761011120----------------56400014------4


Q ss_pred             HHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCC-CC--CCCCCCCCCCCCCEEEE
Q ss_conf             999875432125899816884434201103315777347870-23--65665421135622554
Q gi|254780268|r  178 AIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNA-IH--FGERDCSVQRRNQKIWE  238 (443)
Q Consensus       178 a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~-v~--l~erdCSiQrr~qkiiE  238 (443)
                      .|++|++.|       ||+|  ||+     |++-+|=..|.. +-  --|||   |.-||-++|
T Consensus       143 LFeqAK~nA-------PCII--FID-----EIDAVGr~RGaG~lGGGnDERE---QTLNQLLVE  189 (505)
T TIGR01241       143 LFEQAKKNA-------PCII--FID-----EIDAVGRQRGAGELGGGNDERE---QTLNQLLVE  189 (505)
T ss_pred             HHHHHHHHC-------CCEE--EEE-----CHHHCCCCCCCCCCCCCCCHHH---HHHHHHHEE
T ss_conf             579999718-------9705--640-----1000033356436676541355---433233133


No 99 
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=92.24  E-value=0.89  Score=25.90  Aligned_cols=59  Identities=15%  Similarity=0.177  Sum_probs=37.3

Q ss_pred             CCCEEEEECCCCCCEE-E-ECC-CCCCCEECCCCCCCEEEEEE---ECCCHHHHHHHHHHHHHHC
Q ss_conf             4421588668998446-7-776-02387707776843389999---5599899999999876540
Q gi|254780268|r  348 PGEITYFHAPGGLGIR-M-DSA-SYQGYTVPSYYDSLIAKLIV---HGKNRKECMMRLNRALNEI  406 (443)
Q Consensus       348 ~G~i~~~~~p~~~gvR-v-Dt~-~~~G~~i~~~yDsmlaKiI~---~g~~R~~Ai~~l~~aL~~~  406 (443)
                      +..++.+..|.+.... + ..- -.-|..+.+-|.++-.|++=   .|..-.+-+.++..+|++.
T Consensus       290 S~~vt~~~~p~g~~~~~~~~~l~~~~~i~i~~g~g~~~~~~fRIg~mG~~~~~di~~~l~al~~~  354 (356)
T cd06451         290 SPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEA  354 (356)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             98279997999999999999999978999978866568958986189899999999999999998


No 100
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; InterPro: IPR005975    The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I.; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=91.46  E-value=1.1  Score=25.18  Aligned_cols=140  Identities=14%  Similarity=0.150  Sum_probs=62.6

Q ss_pred             CHHHHHHHHHHCCCCCCCCCCCC--CHHHHHHHHHCCCC-HHHHH----C--------CCCCCCCEEEEEEECHHHHHHH
Q ss_conf             89988776642244332433345--57999873200330-12200----0--------2345782168887506689999
Q gi|254780268|r  115 DKITAKKTAQQLGIPVVPGSGEV--YPHTAMPIAKEIGF-PVLVK----A--------SAGGGGRGMRIAYSENDLSEAI  179 (443)
Q Consensus       115 DK~~~k~~a~~~GVP~~p~~~~~--~~~ea~~~a~~iGy-PviiK----p--------~~gGGG~Gi~vv~~~~el~~a~  179 (443)
                      .+.+.|++.-+-.|...+++..+  +.|+++...+.+|+ |||+=    .        -+.+-..|-.-+.+-.++..+.
T Consensus       164 ~~~~~~riyPqP~v~lLvg~~ltpgDie~l~~~vEaFGL~P~~LPDLS~SLDGHLa~dd~s~~T~GGT~l~~i~~~g~s~  243 (451)
T TIGR01285       164 RKADAKRIYPQPQVNLLVGSLLTPGDIEELRDMVEAFGLKPVVLPDLSRSLDGHLADDDFSPITLGGTTLEDIRELGQSA  243 (451)
T ss_pred             CCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEECCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             56766400689824451778888867999999998608972240211002465008787005678997359998736887


Q ss_pred             H-HHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCC-----CCC----CCCCCCCCCCCCCCEEEEECCCCCCCHHH
Q ss_conf             9-8754321258998168844342011033157773478-----702----36566542113562255403445588999
Q gi|254780268|r  180 D-QARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMG-----NAI----HFGERDCSVQRRNQKIWEEAHSPVISAQD  249 (443)
Q Consensus       180 ~-~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g-----~~v----~l~erdCSiQrr~qkiiEeaPap~l~~~~  249 (443)
                      . .|..|....  -..++-+++-.     ++.|+-.=.|     ..+    .+..+-|.   +|--.|  -+.|..-+.+
T Consensus       244 ~tlaIGe~mr~--aA~~l~~R~g~-----~y~vF~~L~GLeavD~F~~~L~~~SG~~Cd---hhfPfv--P~vP~~~~Rq  311 (451)
T TIGR01285       244 VTLAIGESMRA--AAELLKDRCGV-----PYEVFPSLMGLEAVDAFVSVLSKISGSRCD---HHFPFV--PAVPERFERQ  311 (451)
T ss_pred             HHHHHHHHHHH--HHHHHHHHCCC-----CCHHCCCCCCHHHHHHHHHHHHHHHHHHCC---CCCCCC--CCCCHHHHHH
T ss_conf             46887776544--46752212177-----400101224468999999999998443215---678988--9886334520


Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             99999999998865154
Q gi|254780268|r  250 RTEIGETCVKAMKKIDY  266 (443)
Q Consensus       250 ~~~i~~~A~~~~~~~g~  266 (443)
                      |.+|+++.+...=-+|=
T Consensus       312 R~QL~DA~LD~HF~~gG  328 (451)
T TIGR01285       312 RAQLQDAMLDTHFFLGG  328 (451)
T ss_pred             HHHHHHHHHHHHHHHCC
T ss_conf             78899999988774131


No 101
>KOG2157 consensus
Probab=91.36  E-value=0.65  Score=26.88  Aligned_cols=53  Identities=21%  Similarity=0.320  Sum_probs=37.9

Q ss_pred             CCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEEEE
Q ss_conf             301220002345782168887506689999987543212589-9816884434201
Q gi|254780268|r  150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFG-NDAVYIEKYLENP  204 (443)
Q Consensus       150 GyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fg-d~~vlvEk~i~~~  204 (443)
                      -..-++||+.-.=|+|+.++++.+++.+.+.....+  .+.. ++...+-+||+.|
T Consensus       199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~--~s~~~~~~~vv~~yi~~p  252 (497)
T KOG2157         199 RSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSF--ISENNDEGYVVSAYIDRP  252 (497)
T ss_pred             CCEEEECCCCCCCCCEEEEECCHHHHHHHHHCCCCC--CCCCCCCCCEEEEECCCC
T ss_conf             666896443210165268862356656543123332--332333442443102673


No 102
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=91.14  E-value=1.4  Score=24.50  Aligned_cols=113  Identities=19%  Similarity=0.270  Sum_probs=70.6

Q ss_pred             CEEEEEECCCHHHHHHHHHHHH---CCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE
Q ss_conf             7068664470999999998888---0965999858557718776758579991899853000698999999987099899
Q gi|254780268|r    2 ISKILIANRGEIALRILRACKE---LGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI   78 (443)
Q Consensus         2 ~~~iLianrGeia~riira~~e---lGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai   78 (443)
                      .++++|.+.|+.+.++++..++   +|++.+.+|.++......         ++      ---+++++++.++++++|-|
T Consensus       144 ~r~v~IvG~~~~~~~l~~~i~~~p~~G~~vvG~~dd~~~~~~~---------~~------~lG~~~~l~~~~~~~~id~V  208 (464)
T PRK10124        144 TRMVAVAGDLPAGQMLLESFRNQPWLGFEVVGVYHDPKPGGVS---------ND------WAGNLQQLVEDAKAGKIHNV  208 (464)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC---------CC------CCCCHHHHHHHHHHCCCCEE
T ss_conf             4389998388899999999972966796699996688766678---------99------87899999999986899989


Q ss_pred             ECCCCHHHCC---HHHHHHHHHCCCEE-ECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             4585313109---76668898459216-268989998721899887766422443324333
Q gi|254780268|r   79 HPGYGFLSEN---AKFAEILEDHHIKF-IGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG  135 (443)
Q Consensus        79 hPGyGfLsEn---~~fa~~~e~~Gi~f-IGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~  135 (443)
                      +---. +++.   .++...|++.++.+ +-|.--.......+.     -.=.|+|++.-..
T Consensus       209 ~ialp-~~~~~~i~~lv~~l~~~~v~v~~vPd~~~~~~~~~~~-----~~~~g~P~i~~~~  263 (464)
T PRK10124        209 YIAMS-MCDGARVKKLVHQLADTTCSVLLIPDVFTFNILHSRL-----EEMNGVPVVPLYD  263 (464)
T ss_pred             EEECC-CCHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCE-----EEECCEEEEEEEC
T ss_conf             99668-2368899999999961895599946546521456631-----6887856899746


No 103
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily   of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=90.98  E-value=1.4  Score=24.52  Aligned_cols=120  Identities=26%  Similarity=0.383  Sum_probs=62.9

Q ss_pred             CHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHC----CHHHHHHHHHHCCCCEEECCCCHHH
Q ss_conf             099999999888809659998585577187767585799918998530006----9899999998709989945853131
Q gi|254780268|r   11 GEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYL----NIQQIVAACEVTGADAIHPGYGFLS   86 (443)
Q Consensus        11 Geia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYl----di~~ii~~a~~~~~daihPGyGfLs   86 (443)
                      +|+. ++.+.++++|++-+.+.++.        +.++.+.  .++....|.    =...+.+.|++.|.+.|.=|     
T Consensus        39 ~E~e-~a~~~a~~~gi~~~~i~~~~--------l~~~~~~--~N~~~RCy~CK~~l~~~l~~~a~~~g~~~v~dG-----  102 (202)
T cd01990          39 RELE-EAKRLAKEIGIRHEVIETDE--------LDDPEFA--KNPPDRCYLCKKALYEALKEIAEELGLDVVLDG-----  102 (202)
T ss_pred             HHHH-HHHHHHHHCCCCEEEEECCH--------HHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-----
T ss_conf             8999-99999986398579973411--------1016554--597556229989999999999996799789415-----


Q ss_pred             CCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHHCCCCHHHHHCCCCCCCCE
Q ss_conf             097666889845921626898999872189988776642244332433-3455799987320033012200023457821
Q gi|254780268|r   87 ENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGS-GEVYPHTAMPIAKEIGFPVLVKASAGGGGRG  165 (443)
Q Consensus        87 En~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~-~~~~~~ea~~~a~~iGyPviiKp~~gGGG~G  165 (443)
                      .|++=   +.+     -.|..             +.+.+.||-. |.. ...+.++..+.+.++|+|+--||+.  .+..
T Consensus       103 tn~dD---l~d-----~RPGl-------------~A~~e~~v~s-PL~e~gl~K~eVR~la~~lgLp~~~kp~~--~CLa  158 (202)
T cd01990         103 TNADD---LGD-----YRPGL-------------KALRELGVRS-PLAEAGLGKAEIRELARELGLPTWDKPAM--ACLA  158 (202)
T ss_pred             CCCCC---CCC-----CCCCH-------------HHHHHCCCCC-CHHHCCCCHHHHHHHHHHCCCCCCCCCCC--CCEE
T ss_conf             75763---235-----57868-------------8998769988-52651978899999999839985668998--7546


Q ss_pred             EEEEE
Q ss_conf             68887
Q gi|254780268|r  166 MRIAY  170 (443)
Q Consensus       166 i~vv~  170 (443)
                      .|+.+
T Consensus       159 sRip~  163 (202)
T cd01990         159 SRIPY  163 (202)
T ss_pred             EECCC
T ss_conf             66578


No 104
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems.  Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2).  MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster.  Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=90.82  E-value=1.2  Score=25.05  Aligned_cols=16  Identities=56%  Similarity=0.968  Sum_probs=7.9

Q ss_pred             HHHHHHHHCCCCCCCC
Q ss_conf             8877664224433243
Q gi|254780268|r  118 TAKKTAQQLGIPVVPG  133 (443)
Q Consensus       118 ~~k~~a~~~GVP~~p~  133 (443)
                      .+|++.++.|+|++|-
T Consensus       121 V~~~~~~~~gipVIpv  136 (421)
T cd01976         121 VARKASKELGIPVVPV  136 (421)
T ss_pred             HHHHHHHHCCCCEEEE
T ss_conf             9999877529988998


No 105
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia.  This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent  nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having  alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=90.68  E-value=1.5  Score=24.38  Aligned_cols=16  Identities=19%  Similarity=0.167  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHCCCCEE
Q ss_conf             8999999987099899
Q gi|254780268|r   63 IQQIVAACEVTGADAI   78 (443)
Q Consensus        63 i~~ii~~a~~~~~dai   78 (443)
                      .+.|.++.++.+.++|
T Consensus        70 ~~ai~~~~~~~~P~~I   85 (428)
T cd01965          70 IEALKNLLSRYKPDVI   85 (428)
T ss_pred             HHHHHHHHHHCCCCEE
T ss_conf             9999999984499889


No 106
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=90.13  E-value=1.7  Score=23.90  Aligned_cols=75  Identities=13%  Similarity=0.120  Sum_probs=39.7

Q ss_pred             HCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHC---HHHHHHHHHHCCCCCCCCCCC
Q ss_conf             06989999999870998994585313109766688984592162689899987218---998877664224433243334
Q gi|254780268|r   60 YLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGD---KITAKKTAQQLGIPVVPGSGE  136 (443)
Q Consensus        60 Yldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gD---K~~~k~~a~~~GVP~~p~~~~  136 (443)
                      +..+.+++++|.+.+...|.-                        -++..+..+|-   -...+.++++++||+.-...-
T Consensus        28 ~e~~~Avi~AAee~~sPvIlq------------------------~~~~~~~~~g~~~~~~~~~~~a~~~~VPV~lHLDH   83 (284)
T PRK09195         28 LETMQVVVETAAELHSPVIIA------------------------GTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDH   83 (284)
T ss_pred             HHHHHHHHHHHHHHCCCEEEE------------------------CCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             999999999999959998999------------------------88516644798999999999998779988996698


Q ss_pred             CCHHHHHHHHHCCCCH-HHHHCC
Q ss_conf             5579998732003301-220002
Q gi|254780268|r  137 VYPHTAMPIAKEIGFP-VLVKAS  158 (443)
Q Consensus       137 ~~~~ea~~~a~~iGyP-viiKp~  158 (443)
                      ...-+....+-+.||. ||+-.|
T Consensus        84 ~~~~e~i~~ai~~GftSVM~DgS  106 (284)
T PRK09195         84 HEKFDDIAQKVRSGVRSVMIDGS  106 (284)
T ss_pred             CCCHHHHHHHHHCCCCEEEEECC
T ss_conf             79999999999749986886389


No 107
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=89.69  E-value=1.8  Score=23.67  Aligned_cols=120  Identities=21%  Similarity=0.256  Sum_probs=73.1

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE--
Q ss_conf             970686644709999999988880965999858557718776758579991899853000698999999987099899--
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI--   78 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai--   78 (443)
                      |..+|||.+--.=|..+.+.+..++ ..+.+.|-.+.-+......-. ...+      -+++.+.+.+..+++++|.+  
T Consensus         1 ~~~~ilvlGGT~Dar~la~~L~~~~-~~~~~ss~t~~g~~l~~~~~~-~~~~------G~l~~e~l~~~l~e~~i~llID   72 (257)
T COG2099           1 SMMRILLLGGTSDARALAKKLAAAP-VDIILSSLTGYGAKLAEQIGP-VRVG------GFLGAEGLAAFLREEGIDLLID   72 (257)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHCCCC-EEEC------CCCCHHHHHHHHHHCCCCEEEE
T ss_conf             9835999826389999999862068-617999703444241110588-6652------7688789999999749888997


Q ss_pred             --ECCCCH-HHCCHHHHHHHHHCCCEEEC---CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf             --458531-31097666889845921626---8989998721899887766422443324333455799987320033
Q gi|254780268|r   79 --HPGYGF-LSENAKFAEILEDHHIKFIG---PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIG  150 (443)
Q Consensus        79 --hPGyGf-LsEn~~fa~~~e~~Gi~fIG---Ps~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iG  150 (443)
                        || |-+ .|+|  .+++|++.||+++-   |+...-   +                ..|..+.+.+|+.+.+.+.|
T Consensus        73 ATHP-yAa~iS~N--a~~aake~gipy~r~eRP~~~~~---g----------------d~~~~V~d~~ea~~~~~~~~  128 (257)
T COG2099          73 ATHP-YAARISQN--AARAAKETGIPYLRLERPPWAPN---G----------------DNWIEVADIEEAAEAAKQLG  128 (257)
T ss_pred             CCCH-HHHHHHHH--HHHHHHHHCCCEEEEECCCCCCC---C----------------CCEEEECCHHHHHHHHHCCC
T ss_conf             8875-79999899--99999985996799877755457---9----------------96698458999999875047


No 108
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=89.58  E-value=1.2  Score=24.98  Aligned_cols=210  Identities=17%  Similarity=0.260  Sum_probs=108.2

Q ss_pred             HHHHHHHHHCCCEEEEEC--CCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE--ECC-CCHHHCCH
Q ss_conf             999998888096599985--8557718776758579991899853000698999999987099899--458-53131097
Q gi|254780268|r   15 LRILRACKELGIPTVAVH--STADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI--HPG-YGFLSENA   89 (443)
Q Consensus        15 ~riira~~elGi~tv~v~--s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai--hPG-yGfLsEn~   89 (443)
                      +.-|+.+.+.|.+-|=+-  +..+..+. .....+ ..+|  .-.+--.| ..+.-.+-++++|.+  -|| +||-.--.
T Consensus        39 v~QI~~L~~aG~dIVRvtv~~~e~A~A~-~~Ik~~-~~vP--LVaDiHf~-~rla~~~~~~g~~k~RINPGNig~~~~v~  113 (361)
T COG0821          39 VAQIKALERAGCDIVRVTVPDMEAAEAL-KEIKQR-LNVP--LVADIHFD-YRLALEAAECGVDKVRINPGNIGFKDRVR  113 (361)
T ss_pred             HHHHHHHHHCCCCEEEEECCCHHHHHHH-HHHHHH-CCCC--EEEEEECC-HHHHHHHHHCCCCEEEECCCCCCCHHHHH
T ss_conf             9999999981897899936997899999-999984-7998--79873056-89999756427426987786567367799


Q ss_pred             HHHHHHHHCCCEE-ECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEE
Q ss_conf             6668898459216-268989998721899887766422443324333455799987320033012200023457821688
Q gi|254780268|r   90 KFAEILEDHHIKF-IGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRI  168 (443)
Q Consensus        90 ~fa~~~e~~Gi~f-IGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~v  168 (443)
                      +..+++.+.|++. ||-++-+++        |+++++.|-|++... +.|.-+-.+.++++||+=++=..         +
T Consensus       114 ~vVe~Ak~~g~piRIGVN~GSLe--------k~~~~ky~~pt~eal-veSAl~~a~~~e~l~f~~i~iS~---------K  175 (361)
T COG0821         114 EVVEAAKDKGIPIRIGVNAGSLE--------KRLLEKYGGPTPEAL-VESALEHAELLEELGFDDIKVSV---------K  175 (361)
T ss_pred             HHHHHHHHCCCCEEEECCCCCHH--------HHHHHHHCCCCHHHH-HHHHHHHHHHHHHCCCCCEEEEE---------E
T ss_conf             99999997599879952668616--------999998547987899-99999999999977998679998---------7


Q ss_pred             EEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECC-CCC---CCCCC------CCCCCCCCCCEEEE
Q ss_conf             875066899999875432125899816884434201103315777347-870---23656------65421135622554
Q gi|254780268|r  169 AYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGM-GNA---IHFGE------RDCSVQRRNQKIWE  238 (443)
Q Consensus       169 v~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~-g~~---v~l~e------rdCSiQrr~qkiiE  238 (443)
                      +.+..++-++|+.....               ++.|-|+-|.=-|.+. |.+   +.+|.      -| ++      -|-
T Consensus       176 ~Sdv~~~v~aYr~lA~~---------------~dyPLHLGvTEAG~~~~G~VkSa~alg~LL~eGIGD-TI------RVS  233 (361)
T COG0821         176 ASDVQLMVAAYRLLAKR---------------CDYPLHLGVTEAGMGFKGIVKSAAALGALLSEGIGD-TI------RVS  233 (361)
T ss_pred             CCCHHHHHHHHHHHHHH---------------CCCCCCCCEECCCCCCCCEEHHHHHHHHHHHHCCCC-EE------EEE
T ss_conf             38789999999999986---------------687720141035676450007789999999725776-59------996


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf             034455889999999999999886515434102458972
Q gi|254780268|r  239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE  277 (443)
Q Consensus       239 eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~  277 (443)
                      .+|.|  .+|.     ..+..+.+.+|++. ..++|.-.
T Consensus       234 Lt~~P--~~EV-----~V~~eILqslglR~-~~v~~iaC  264 (361)
T COG0821         234 LTADP--VEEV-----KVAQEILQSLGLRS-RGVEVIAC  264 (361)
T ss_pred             CCCCC--HHHH-----HHHHHHHHHCCCCC-CCCEEEEC
T ss_conf             58883--2557-----99999999808663-58669989


No 109
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE.  NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively.  NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein.  NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=89.53  E-value=1.4  Score=24.58  Aligned_cols=17  Identities=12%  Similarity=0.091  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHCCCCEEE
Q ss_conf             89999999870998994
Q gi|254780268|r   63 IQQIVAACEVTGADAIH   79 (443)
Q Consensus        63 i~~ii~~a~~~~~daih   79 (443)
                      .++|.++.++.+.++|.
T Consensus        73 ~~aI~~~~~~~~P~~i~   89 (429)
T cd03466          73 KKGLKNVIEQYNPEVIG   89 (429)
T ss_pred             HHHHHHHHHHCCCCEEE
T ss_conf             99999999841998899


No 110
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=89.35  E-value=1.9  Score=23.50  Aligned_cols=88  Identities=23%  Similarity=0.326  Sum_probs=58.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEE--CCC--HHHCC-CCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCE-E
Q ss_conf             866447099999999888809659998--585--57718-77675857999189985300069899999998709989-9
Q gi|254780268|r    5 ILIANRGEIALRILRACKELGIPTVAV--HST--ADSGA-MHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADA-I   78 (443)
Q Consensus         5 iLianrGeia~riira~~elGi~tv~v--~s~--~D~~a-~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~da-i   78 (443)
                      |+.+|+=+=|++..+++-|-|++++=|  -|+  .|... .+.... +-..||-+    +-||.+++.+ |.+.|+|= |
T Consensus        13 Vi~~~~~~~A~~lA~aL~egG~~~~EvTlRT~~A~~aI~~l~~~~P-~~~~iGAG----TVL~~~Q~~~-A~~AGA~F~v   86 (205)
T TIGR01182        13 VIRIDDVEDALPLAKALIEGGLRVLEVTLRTPVALEAIRALRKEVP-KDALIGAG----TVLNPEQLRQ-AVAAGAQFIV   86 (205)
T ss_pred             EEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCC-CCCEECCC----CCCCHHHHHH-HHHCCCCEEE
T ss_conf             8872678777899999986798089885147216899999997282-33487167----6489899999-9970895787


Q ss_pred             ECCCCHHHCCHHHHHHHHHCCCEEE
Q ss_conf             4585313109766688984592162
Q gi|254780268|r   79 HPGYGFLSENAKFAEILEDHHIKFI  103 (443)
Q Consensus        79 hPGyGfLsEn~~fa~~~e~~Gi~fI  103 (443)
                      =||     -|+++++.|.+.|+.+|
T Consensus        87 SPG-----~~p~l~~~~~~~~~P~i  106 (205)
T TIGR01182        87 SPG-----LTPELAKHAKDKGIPII  106 (205)
T ss_pred             CCC-----CCHHHHHHHHHCCCCEE
T ss_conf             697-----88899999850888121


No 111
>TIGR00268 TIGR00268 conserved hypothetical protein TIGR00268; InterPro: IPR005232   This family of conserved hypothetical proteins has no known function but is predicted to be part of the wider PP-loop superfamily ..
Probab=88.62  E-value=1.7  Score=23.91  Aligned_cols=132  Identities=20%  Similarity=0.297  Sum_probs=76.1

Q ss_pred             EEEEEECCCHH-HHHHHHHHHH-CCCEEEEECCC------------HHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHH
Q ss_conf             06866447099-9999998888-09659998585------------5771877675857999189985300069899999
Q gi|254780268|r    3 SKILIANRGEI-ALRILRACKE-LGIPTVAVHST------------ADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVA   68 (443)
Q Consensus         3 ~~iLianrGei-a~riira~~e-lGi~tv~v~s~------------~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~   68 (443)
                      ||||||=.|=| ..-+..-|.+ +|.+++||.--            +..+|.....+.+.+.+                 
T Consensus        16 k~~~IAySGGvDS~lla~v~~~v~g~~~lait~~sP~~sp~~el~~A~~~A~~~g~~he~~~~-----------------   78 (263)
T TIGR00268        16 KKVLIAYSGGVDSSLLAAVCSDVAGTEVLAITVVSPSISPRRELEDAKAIAKEIGVKHELVKI-----------------   78 (263)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECC-----------------
T ss_conf             816999517465899999998753101135787627757354489999999880830121100-----------------


Q ss_pred             HHHHCCCCEEE-CCCCHHHCC----------HHHHHHHHHCCCEE--ECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99870998994-585313109----------76668898459216--268989998721899887766422443324333
Q gi|254780268|r   69 ACEVTGADAIH-PGYGFLSEN----------AKFAEILEDHHIKF--IGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG  135 (443)
Q Consensus        69 ~a~~~~~daih-PGyGfLsEn----------~~fa~~~e~~Gi~f--IGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~  135 (443)
                             |-+. |-|--=.||          ..+...-++.|+..  =|.+.+  ++.++|--.|..-+-.|+. -||..
T Consensus        79 -------d~~~n~~f~~N~~~RCY~CK~~~~~~L~~~a~~~gy~~V~dGtN~d--DL~~~RPG~~A~~E~~g~~-SP~ae  148 (263)
T TIGR00268        79 -------DKMANPNFRANVEERCYFCKKKVLSILVKLAEKRGYDVVVDGTNAD--DLEDHRPGLRAVKELNGVY-SPWAE  148 (263)
T ss_pred             -------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCC--CCCCCCCHHHHHHHCCCCC-CCCCC
T ss_conf             -------1236850016885444154888999989999863995798234620--0023675135676607886-87200


Q ss_pred             -CCCHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf             -45579998732003301220002345
Q gi|254780268|r  136 -EVYPHTAMPIAKEIGFPVLVKASAGG  161 (443)
Q Consensus       136 -~~~~~ea~~~a~~iGyPviiKp~~gG  161 (443)
                       .++..|.+++|+.+|||.--||+...
T Consensus       149 f~I~K~eir~ia~~lg~~~~DKP~~~C  175 (263)
T TIGR00268       149 FGITKKEIREIAKSLGLSFYDKPSEAC  175 (263)
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf             256879999999974889888866210


No 112
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=88.52  E-value=2.2  Score=23.11  Aligned_cols=72  Identities=21%  Similarity=0.324  Sum_probs=30.2

Q ss_pred             HHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHH-HHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             7766422443324333455799987320033012-200023457821688875066899999875432125899816884
Q gi|254780268|r  120 KKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPV-LVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       120 k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPv-iiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      -+.+.+-|.-|.|+... ++.-++. .+++|--. |-=.+-=|+|+|+   .|+..|+-..+++         +-+|+|+
T Consensus       115 ae~Lv~eGF~VlpY~~~-D~v~akr-Led~Gc~avMPlgsPIGSg~Gl---~n~~~l~~i~e~~---------~vPvIVD  180 (246)
T pfam05690       115 AEILVKEGFTVLPYTTD-DPVLARR-LEEAGCAAVMPLGAPIGSGLGL---RNPENLRIIIEEA---------DVPVIVD  180 (246)
T ss_pred             HHHHHHCCCEEEEECCC-CHHHHHH-HHHCCCEEEEECCCCCCCCCCC---CCHHHHHHHHHHC---------CCCEEEE
T ss_conf             99999789989886179-9899999-9875984986224401368886---8999999999967---------9988984


Q ss_pred             EEEEEEE
Q ss_conf             4342011
Q gi|254780268|r  199 KYLENPR  205 (443)
Q Consensus       199 k~i~~~r  205 (443)
                      -=|..|-
T Consensus       181 AGiG~pS  187 (246)
T pfam05690       181 AGIGTPS  187 (246)
T ss_pred             CCCCCHH
T ss_conf             8989678


No 113
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=88.49  E-value=0.97  Score=25.64  Aligned_cols=16  Identities=13%  Similarity=0.075  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHCEECCC
Q ss_conf             9999987654088263
Q gi|254780268|r  396 MMRLNRALNEIIIDGI  411 (443)
Q Consensus       396 i~~l~~aL~~~~I~Gv  411 (443)
                      ++.+....+++.+.||
T Consensus       302 ~~~i~~lvke~~aDGV  317 (377)
T TIGR03190       302 YDHVLGLAKEYNVQGA  317 (377)
T ss_pred             HHHHHHHHHHHCCCEE
T ss_conf             9999999999688999


No 114
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=88.43  E-value=2.2  Score=23.07  Aligned_cols=88  Identities=16%  Similarity=0.214  Sum_probs=43.5

Q ss_pred             EEEEEECCCHHHHHHHHHHHH---CCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEE
Q ss_conf             068664470999999998888---09659998585577187767585799918998530006989999999870998994
Q gi|254780268|r    3 SKILIANRGEIALRILRACKE---LGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH   79 (443)
Q Consensus         3 ~~iLianrGeia~riira~~e---lGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daih   79 (443)
                      +|+||.+.|+.+.++++..++   +|++.+.+..++.......  .       +.+   ..-+++.+.++++++++|-|.
T Consensus       129 rrvLIIG~g~~~~~l~~~l~~~~~~G~~vvG~vdd~~~~~~~~--~-------~~p---vlg~~~~l~~~i~~~~ideVi  196 (451)
T TIGR03023       129 RRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDARTGV--R-------GVP---VLGKLDDLEELIREGEVDEVY  196 (451)
T ss_pred             CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC--C-------CCC---CCCCHHHHHHHHHHCCCCEEE
T ss_conf             5499996868999999999719436848999983885444445--7-------997---369899999999967998899


Q ss_pred             CCCCHHHC--CHHHHHHHHHCCCEE
Q ss_conf             58531310--976668898459216
Q gi|254780268|r   80 PGYGFLSE--NAKFAEILEDHHIKF  102 (443)
Q Consensus        80 PGyGfLsE--n~~fa~~~e~~Gi~f  102 (443)
                      =--...++  -.++...|++.|+.+
T Consensus       197 ia~~~~~~~~~~~li~~~~~~~v~v  221 (451)
T TIGR03023       197 IALPLAAEKRILELLDALEDLTVDV  221 (451)
T ss_pred             EECCCCCHHHHHHHHHHHHHCCCEE
T ss_conf             9548355689999999986459879


No 115
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=88.34  E-value=2.3  Score=23.03  Aligned_cols=27  Identities=30%  Similarity=0.449  Sum_probs=24.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             866447099999999888809659998
Q gi|254780268|r    5 ILIANRGEIALRILRACKELGIPTVAV   31 (443)
Q Consensus         5 iLianrGeia~riira~~elGi~tv~v   31 (443)
                      ||..++-|-|+...+++-+-|+.+|=|
T Consensus        18 Vlr~~~~e~a~~~a~Ali~gGi~~IEI   44 (211)
T COG0800          18 VIRGDDVEEALPLAKALIEGGIPAIEI   44 (211)
T ss_pred             EEEECCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             997089999999999999769876999


No 116
>PRK13114 consensus
Probab=88.10  E-value=2.3  Score=22.93  Aligned_cols=174  Identities=13%  Similarity=0.134  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHH---HC--CCCEEECCCC
Q ss_conf             99999999888809659998---5855771877675857999189985300069899999998---70--9989945853
Q gi|254780268|r   12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACE---VT--GADAIHPGYG   83 (443)
Q Consensus        12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~---~~--~~daihPGyG   83 (443)
                      +.-.++++++-+.|...+=+   ||||=..-+-.+.|.+.. |.      +=.+.+.++++.+   +.  +.--|.=||-
T Consensus        27 ~~t~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~rA-L~------~G~~l~~~f~~v~~~r~~~~~~PivlM~Y~   99 (266)
T PRK13114         27 GDTAANLDALVAGGADVIELGMPFTDPMADGPAIQAANLRS-LA------AGTTTADIFRIAAEFRQRHPEVPLVLMGYA   99 (266)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHHHHCCCCCCEEEEEEH
T ss_conf             99999999999769999997999888677689999999999-98------699799999999998741899887998630


Q ss_pred             --HHHCC-HHHHHHHHHCCCEE-ECC--CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHH-HHHHHHC-CCCHHHH
Q ss_conf             --13109-76668898459216-268--989998721899887766422443324333455799-9873200-3301220
Q gi|254780268|r   84 --FLSEN-AKFAEILEDHHIKF-IGP--SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHT-AMPIAKE-IGFPVLV  155 (443)
Q Consensus        84 --fLsEn-~~fa~~~e~~Gi~f-IGP--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~e-a~~~a~~-iGyPvii  155 (443)
                        ++.-. ..|++.|.++|+.= |=|  +++      .-...+..+++.|+..++.....+.++ ....++. -||=..+
T Consensus       100 N~i~~~G~~~F~~~~~~aGvdG~IipDLP~e------E~~~~~~~~~~~gi~~I~liaPtt~~~Ri~~i~~~a~gFiY~v  173 (266)
T PRK13114        100 NPMVRRGPDWFAAECKKAGVDGVICVDIPPE------EDAELGPALRAAGIDPIRLATPTTDAARLPAVLEGASGFLYYV  173 (266)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEECCCCHH------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             1999864999999999749977984589978------8899999999749972677569997999999997389958998


Q ss_pred             HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEC
Q ss_conf             0023457821688875066899999875432125899816884434201103
Q gi|254780268|r  156 KASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHI  207 (443)
Q Consensus       156 Kp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhi  207 (443)
                      = ..|-  -|.+ -...+++.+.+++.++..     +-++.+-==|..+.|+
T Consensus       174 s-~~Gv--TG~~-~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~~  216 (266)
T PRK13114        174 S-VAGI--TGMQ-QAAQASIEAAVARIKAAT-----DLPVAVGFGVRTPEQA  216 (266)
T ss_pred             E-CCCC--CCCC-CCCHHHHHHHHHHHHHHC-----CCCEEEECCCCCHHHH
T ss_conf             4-4556--6776-566588999999999707-----9986998366989999


No 117
>PRK00208 thiG thiazole synthase; Reviewed
Probab=87.58  E-value=2.5  Score=22.72  Aligned_cols=74  Identities=24%  Similarity=0.330  Sum_probs=32.5

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH-HHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             88776642244332433345579998732003301-22000234578216888750668999998754321258998168
Q gi|254780268|r  118 TAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFP-VLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVY  196 (443)
Q Consensus       118 ~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyP-viiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vl  196 (443)
                      .+-+.+.+-|.-|.|+... ++--++. .+++|-- ||-=.+-=|+|+|+   .|+..|+-..+++         +-+|+
T Consensus       115 ~Aae~Lv~eGF~VlpY~~~-D~v~akr-Le~~Gc~avMPlgsPIGSg~Gl---~n~~~l~~i~e~~---------~vPvI  180 (256)
T PRK00208        115 KAAEILVKEGFVVLPYCTD-DPVLAKR-LEEAGCAAVMPLGAPIGSGLGL---LNPYNLRIIIEQA---------DVPVI  180 (256)
T ss_pred             HHHHHHHHCCCEEEEECCC-CHHHHHH-HHHCCCEEEEECCCCCCCCCCC---CCHHHHHHHHHHC---------CCCEE
T ss_conf             9999999889989786788-9899999-9974953452045643479887---9999999999867---------99889


Q ss_pred             EEEEEEEEE
Q ss_conf             844342011
Q gi|254780268|r  197 IEKYLENPR  205 (443)
Q Consensus       197 vEk~i~~~r  205 (443)
                      |+-=|..|-
T Consensus       181 VDAGiG~pS  189 (256)
T PRK00208        181 VDAGIGTPS  189 (256)
T ss_pred             EECCCCCHH
T ss_conf             857889766


No 118
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235   This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=87.09  E-value=1.6  Score=24.09  Aligned_cols=63  Identities=14%  Similarity=0.141  Sum_probs=45.3

Q ss_pred             HHHHHHHCCCEEEEECC-C-HHHCCCCHHHCCEEEECCCCCC-CCHHCCHHHHHHHHHHC--CCCEEE
Q ss_conf             99988880965999858-5-5771877675857999189985-30006989999999870--998994
Q gi|254780268|r   17 ILRACKELGIPTVAVHS-T-ADSGAMHVRLADESVCIGPPSS-KDSYLNIQQIVAACEVT--GADAIH   79 (443)
Q Consensus        17 iira~~elGi~tv~v~s-~-~D~~a~~~~~ADe~~~i~~~~~-~~sYldi~~ii~~a~~~--~~daih   79 (443)
                      +-.|+|+|||++-=|.. | ||....-++.=.+|+++..-.+ .-.-+|+++|-++|+++  ++=.|-
T Consensus       113 F~~TlkrlGIevrFvd~dd~pe~~~k~id~nTKAvf~EtIgNP~~~v~Die~~a~~Ah~~PhgvPliV  180 (434)
T TIGR01326       113 FKHTLKRLGIEVRFVDGDDDPEELEKAIDENTKAVFAETIGNPALNVPDIEAVAEVAHAHPHGVPLIV  180 (434)
T ss_pred             HHHHHHHCCEEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf             99955544814887278888789997606675189840123877676785899999986789834887


No 119
>pfam01820 Dala_Dala_lig_N D-ala D-ala ligase N-terminus. This family represents the N-terminal region of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4 which is thought to be involved in substrate binding. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=87.02  E-value=0.45  Score=28.00  Aligned_cols=86  Identities=17%  Similarity=0.281  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE----ECCCCHHHCCH
Q ss_conf             99999988880965999858557718776758579991899853000698999999987099899----45853131097
Q gi|254780268|r   14 ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI----HPGYGFLSENA   89 (443)
Q Consensus        14 a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai----hPGyGfLsEn~   89 (443)
                      |.-+++++...+++.+.++-+.|..-..  ..+..-........ ............+...+|.+    |.++|   ||.
T Consensus        21 a~~v~~~L~~~~~~v~~i~i~~~g~w~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~DvvF~~lHG~~G---EDG   94 (110)
T pfam01820        21 ARAVLKALDKEGYEVIPIDIDKDGRWLL--GDGDLGLLAPDDKL-DLEDKAELLAVLLAEKVDVVFPVLHGPFG---EDG   94 (110)
T ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCEEE--CCCHHHHHCCCCCC-CCCCCCCCCCHHHCCCCCEEEEECCCCCC---CCC
T ss_conf             9999999976497599998748987873--46403332135310-01222222101112488999998889886---657


Q ss_pred             HHHHHHHHCCCEEECC
Q ss_conf             6668898459216268
Q gi|254780268|r   90 KFAEILEDHHIKFIGP  105 (443)
Q Consensus        90 ~fa~~~e~~Gi~fIGP  105 (443)
                      .++..|+..|++|+|+
T Consensus        95 ~iQglle~~~iPytGs  110 (110)
T pfam01820        95 TIQGLLELLGIPYVGS  110 (110)
T ss_pred             HHHHHHHHCCCCCCCC
T ss_conf             8999999819998899


No 120
>TIGR01435 glu_cys_lig_rel putative glutamate--cysteine ligase/putative amino acid ligase; InterPro: IPR006335   This entry represents a family with an N-terminal region similar to proteobacterial glutamate-cysteine ligase (gamma-glutamylcysteine synthetase). The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria, and (shown by PSI-BLAST) to D-alanine-D-alanine ligases. Cyanophycin is a storage molecule composed of arginine, aspartic acid, and some glutamic acid. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced , and in proteobacterium Pasteurella multocida.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process.
Probab=86.81  E-value=0.74  Score=26.47  Aligned_cols=98  Identities=22%  Similarity=0.282  Sum_probs=69.2

Q ss_pred             HHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHH-HHHCCCCCCCCEEEE----EEECHHHHHHHHHHHHH
Q ss_conf             8721899887766422443324333455799987320033012-200023457821688----87506689999987543
Q gi|254780268|r  111 KIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPV-LVKASAGGGGRGMRI----AYSENDLSEAIDQARSE  185 (443)
Q Consensus       111 ~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPv-iiKp~~gGGG~Gi~v----v~~~~el~~a~~~a~~e  185 (443)
                      -.+.+|...|.++.++|..++-+....+...+.+....+.-.. ++||.....|.|..+    +.+.+++.+++..+.++
T Consensus       486 ~~~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~g~~~~~~~~~~~~d~~~~~~~~~~~  565 (754)
T TIGR01435       486 LLLENKVVTKKVLAEAGFNVPGGDEFSSLALALEAFLLFENKAFVVKPKSTNYGLGTTIFKEGFTNLEDFAEALRNAFKE  565 (754)
T ss_pred             EEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             00011257788887604557665304678888888876413300332354444331234430221056789999876420


Q ss_pred             HHCCCCCCCEEEEEEEEEEEECCEEEEEEC
Q ss_conf             212589981688443420110331577734
Q gi|254780268|r  186 ALAAFGNDAVYIEKYLENPRHIEVQIFGDG  215 (443)
Q Consensus       186 a~~~fgd~~vlvEk~i~~~rhiEvqVl~D~  215 (443)
                            |..+++++++.|. +...-+++|.
T Consensus       566 ------d~~~~~~~~~~g~-~~~~~~~~~~  588 (754)
T TIGR01435       566 ------DSEVLVEEFLPGT-EYRFFLLGDE  588 (754)
T ss_pred             ------HHHHHHHHHCCCC-CEEEEEECCH
T ss_conf             ------0134333311576-2167763541


No 121
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.76  E-value=2.2  Score=23.13  Aligned_cols=36  Identities=11%  Similarity=0.207  Sum_probs=14.7

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHCEECCCCCCHHHH
Q ss_conf             899995599899999999876540882637788899
Q gi|254780268|r  383 AKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLF  418 (443)
Q Consensus       383 aKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv~TN~~~l  418 (443)
                      .++++.++||.++.+-+..--++..=+=+.+.+..=
T Consensus       492 l~I~aRar~~~~~~~L~~~Ga~~vv~Et~essL~l~  527 (602)
T PRK03659        492 LHILARARGRVEAHELLQAGVTQFSRETFSSALELG  527 (602)
T ss_pred             CEEEEEECCHHHHHHHHHCCCCEEECCHHHHHHHHH
T ss_conf             969998697899999997899978662789999999


No 122
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=86.68  E-value=2.8  Score=22.37  Aligned_cols=31  Identities=10%  Similarity=0.138  Sum_probs=20.1

Q ss_pred             EEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             688875066899999875432125899816884
Q gi|254780268|r  166 MRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       166 i~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      ...+.+++++.+.+++|.+.|.+.  .++|+|+
T Consensus       130 ~~~v~~~~~~~~~i~rA~~~A~~~--rGPV~i~  160 (589)
T PRK07525        130 QEEVRDPSRMAEVLNRVFDKAKRE--SGPAQIN  160 (589)
T ss_pred             EEEECCHHHHHHHHHHHHHHHHHC--CCCEEEE
T ss_conf             899388345699999999999838--9986996


No 123
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids 
Probab=86.37  E-value=2.9  Score=22.26  Aligned_cols=67  Identities=22%  Similarity=0.286  Sum_probs=47.3

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf             06866447099999999888809659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY   82 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy   82 (443)
                      +|+.|-+-|-.+....+.+.++|.+.|+| ||.+          -.+.-+      .=+|++++++...+.+--.-+||-
T Consensus        32 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~v-sD~~----------G~i~~~------~Gld~~~l~~~~~~~~~~~~~~~~   94 (227)
T cd01076          32 ARVAIQGFGNVGSHAARFLHEAGAKVVAV-SDSD----------GTIYNP------DGLDVPALLAYKKEHGSVLGFPGA   94 (227)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEE-ECCC----------CEEECC------CCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf             99999898899999999999879959999-8478----------738888------889999999999965980267887


Q ss_pred             CHHH
Q ss_conf             3131
Q gi|254780268|r   83 GFLS   86 (443)
Q Consensus        83 GfLs   86 (443)
                      -+++
T Consensus        95 ~~~~   98 (227)
T cd01076          95 ERIT   98 (227)
T ss_pred             CCCC
T ss_conf             5389


No 124
>KOG1447 consensus
Probab=85.83  E-value=3.1  Score=22.08  Aligned_cols=103  Identities=23%  Similarity=0.237  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH-HHHHCC--CCCCCCEE---------EEEEECHHHHHHHHHHH
Q ss_conf             9988776642244332433345579998732003301-220002--34578216---------88875066899999875
Q gi|254780268|r  116 KITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFP-VLVKAS--AGGGGRGM---------RIAYSENDLSEAIDQAR  183 (443)
Q Consensus       116 K~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyP-viiKp~--~gGGG~Gi---------~vv~~~~el~~a~~~a~  183 (443)
                      ...+|+++.+.|+.+-.+....+..++.+.+.+++-| .++|+-  .||-|+|.         .+-.+++...++.++..
T Consensus        24 EfQSK~~l~k~Gv~vQ~F~Va~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~qMI  103 (412)
T KOG1447          24 EFQSKEILSKNGVRVQRFFVADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAKQMI  103 (412)
T ss_pred             HHHHHHHHHHCCEEEEEEEEECCCHHHHHHHHHCCCCCEEEEEEEEECCCCCCEECCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf             76667889864905899997067077899998549922377644310676554244776540687448749999999987


Q ss_pred             HH--HHCCCCCCC-----EEEEEEEEEEEECCEEEEEECCCC
Q ss_conf             43--212589981-----688443420110331577734787
Q gi|254780268|r  184 SE--ALAAFGNDA-----VYIEKYLENPRHIEVQIFGDGMGN  218 (443)
Q Consensus       184 ~e--a~~~fgd~~-----vlvEk~i~~~rhiEvqVl~D~~g~  218 (443)
                      .+  +.+.-+...     |||-+.++-.||--.-++-|+.-|
T Consensus       104 G~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~N  145 (412)
T KOG1447         104 GYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECN  145 (412)
T ss_pred             HHHHHHCCCCCCCEEEEEEEEEECCCCCHHEEEEEEECCCCC
T ss_conf             453320448855626555887300361124001435514568


No 125
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems.  Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2).  MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster.  Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=85.75  E-value=3.1  Score=22.06  Aligned_cols=17  Identities=29%  Similarity=0.286  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHCCCCEEE
Q ss_conf             89999999870998994
Q gi|254780268|r   63 IQQIVAACEVTGADAIH   79 (443)
Q Consensus        63 i~~ii~~a~~~~~daih   79 (443)
                      .++|.++.++.+.++|.
T Consensus        74 ~~aI~~~~~~~~p~~I~   90 (435)
T cd01974          74 IDGLKNAYAVYKPDMIA   90 (435)
T ss_pred             HHHHHHHHHHCCCCEEE
T ss_conf             99999999851998899


No 126
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=85.61  E-value=1.1  Score=25.17  Aligned_cols=21  Identities=14%  Similarity=0.278  Sum_probs=16.3

Q ss_pred             HHHHHHHHHCCCCCCEEEEEE
Q ss_conf             999988651543410245897
Q gi|254780268|r  256 TCVKAMKKIDYRGAGTIEFLY  276 (443)
Q Consensus       256 ~A~~~~~~~g~~g~~tvEFl~  276 (443)
                      .-.+..+..||.|+-++||.=
T Consensus       222 ~i~~aL~~~gY~G~i~~E~~p  242 (254)
T TIGR03234       222 FLFAVLDRLGYDGWVGLEYKP  242 (254)
T ss_pred             HHHHHHHHHCCCCEEEEEEEE
T ss_conf             999999983999559999866


No 127
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=85.37  E-value=3.2  Score=21.93  Aligned_cols=75  Identities=21%  Similarity=0.333  Sum_probs=33.0

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHH-HHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             887766422443324333455799987320033012-2000234578216888750668999998754321258998168
Q gi|254780268|r  118 TAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPV-LVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVY  196 (443)
Q Consensus       118 ~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPv-iiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vl  196 (443)
                      ++-+.+.+-|.-|.|+... ++.-++. .+++|--. |-=.+-=|+|+|+   .|+..++-..+++         +-+|+
T Consensus       114 ~Aae~Lv~~GF~VlpY~~~-D~v~akr-Le~~Gc~avMPlgsPIGSg~Gl---~n~~~l~~i~e~~---------~vPvI  179 (248)
T cd04728         114 KAAEILVKEGFTVLPYCTD-DPVLAKR-LEDAGCAAVMPLGSPIGSGQGL---LNPYNLRIIIERA---------DVPVI  179 (248)
T ss_pred             HHHHHHHHCCCEEEEECCC-CHHHHHH-HHHCCCEEEEECCCCCCCCCCC---CCHHHHHHHHHHC---------CCCEE
T ss_conf             9999999889989786788-9999999-9974953452045643479887---9999999999847---------99889


Q ss_pred             EEEEEEEEEE
Q ss_conf             8443420110
Q gi|254780268|r  197 IEKYLENPRH  206 (443)
Q Consensus       197 vEk~i~~~rh  206 (443)
                      |+-=|..|-|
T Consensus       180 VDAGiG~pS~  189 (248)
T cd04728         180 VDAGIGTPSD  189 (248)
T ss_pred             EECCCCCHHH
T ss_conf             8479997567


No 128
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=84.91  E-value=3.4  Score=21.79  Aligned_cols=72  Identities=25%  Similarity=0.318  Sum_probs=28.8

Q ss_pred             HHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHH-HHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             87766422443324333455799987320033012-20002345782168887506689999987543212589981688
Q gi|254780268|r  119 AKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPV-LVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYI  197 (443)
Q Consensus       119 ~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPv-iiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlv  197 (443)
                      +-+.+.+-|.-|.|+... ++.-++. .+++|--. |-=.+-=|+|+|+   .|+..|+-..+++         +-+|+|
T Consensus       129 Aae~Lv~eGF~VlpY~~d-D~v~akr-Le~~Gc~avMPlgsPIGSg~Gl---~n~~~l~~i~e~~---------~vPvIV  194 (267)
T CHL00162        129 AAEFLVRKGFTVLPYINA-DPVLAKQ-LEDIGCATVMPLGSPIGSGQGL---QNLLNLQIIIENA---------KIPVII  194 (267)
T ss_pred             HHHHHHHCCCEEEEECCC-CHHHHHH-HHHCCCEEEEECCCCCCCCCCC---CCHHHHHHHHHCC---------CCCEEE
T ss_conf             999999789999895489-9899999-9865986886345512368875---8999999999648---------998899


Q ss_pred             EEEEEEE
Q ss_conf             4434201
Q gi|254780268|r  198 EKYLENP  204 (443)
Q Consensus       198 Ek~i~~~  204 (443)
                      +-=|..|
T Consensus       195 DAGiG~p  201 (267)
T CHL00162        195 DAGIGTP  201 (267)
T ss_pred             ECCCCCH
T ss_conf             6898967


No 129
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=84.52  E-value=3.5  Score=21.67  Aligned_cols=29  Identities=24%  Similarity=0.313  Sum_probs=14.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHCCCCHHHHHC
Q ss_conf             33243334557999873200330122000
Q gi|254780268|r  129 PVVPGSGEVYPHTAMPIAKEIGFPVLVKA  157 (443)
Q Consensus       129 P~~p~~~~~~~~ea~~~a~~iGyPviiKp  157 (443)
                      |.+-+....+-++..+.+.+.+-|+.|++
T Consensus       180 PLlyaAt~~N~~~m~~LA~~~~~Pl~V~a  208 (454)
T PRK04165        180 PLLYAATKDNWKEMAELAKEYNCPLVVSA  208 (454)
T ss_pred             CEEEECCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             75522789889999999987498479977


No 130
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=83.93  E-value=3.7  Score=21.50  Aligned_cols=109  Identities=23%  Similarity=0.284  Sum_probs=56.5

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEC-CCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf             8664470999999998888096599985-855771877675857999189985300069899999998709989945853
Q gi|254780268|r    5 ILIANRGEIALRILRACKELGIPTVAVH-STADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG   83 (443)
Q Consensus         5 iLianrGeia~riira~~elGi~tv~v~-s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG   83 (443)
                      |+-.+.-+-|+++++++.+-|++.+=|- +.++                          .-..|+..++...+.+ -|-|
T Consensus        13 V~r~~~~~~a~~~~~al~~~Gi~~iEiTl~t~~--------------------------a~~~I~~l~~~~p~~~-iGaG   65 (196)
T pfam01081        13 VIVIKDKEDALPLAEALAAGGIRVLEVTLRTPC--------------------------ALDAIRLLRKNRPDAL-VGAG   65 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHCCCCEEEEECCCHH--------------------------HHHHHHHHHHHCCCCE-EEEE
T ss_conf             997799999999999999879988999479827--------------------------9999999996499967-9998


Q ss_pred             HHHCCHHHHHHHHHCCCEEEC-CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf             131097666889845921626-898999872189988776642244332433345579998732003301
Q gi|254780268|r   84 FLSENAKFAEILEDHHIKFIG-PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFP  152 (443)
Q Consensus        84 fLsEn~~fa~~~e~~Gi~fIG-Ps~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyP  152 (443)
                      =. -+.+-++...++|..|+= |..       |+.. -+.+.+.|+|.+||.  .++.|+..+- +.|+.
T Consensus        66 TV-~~~e~~~~a~~aGA~FivSP~~-------~~~v-~~~a~~~~i~~iPGv--~TpsEi~~A~-~~G~~  123 (196)
T pfam01081        66 TV-LNAQQLAEAAEAGAQFVVSPGL-------TADL-LKHAVDVKIPLIPGV--STPSEIMLGL-DLGLT  123 (196)
T ss_pred             EC-CCHHHHHHHHHCCCCEEECCCC-------HHHH-HHHHHHCCCCEECCC--CCHHHHHHHH-HCCCC
T ss_conf             37-6899999999749999997876-------3999-999997399663785--9999999999-87999


No 131
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=83.85  E-value=3.7  Score=21.48  Aligned_cols=20  Identities=30%  Similarity=0.599  Sum_probs=13.5

Q ss_pred             HHCCHHHHHHHHHHCCCCEE
Q ss_conf             00698999999987099899
Q gi|254780268|r   59 SYLNIQQIVAACEVTGADAI   78 (443)
Q Consensus        59 sYldi~~ii~~a~~~~~dai   78 (443)
                      -|-+.+.+.++...+|++-|
T Consensus        93 ky~s~~~~~~ai~aSgaeiv  112 (327)
T PRK11840         93 KYKDFEETAAAVEASGAEIV  112 (327)
T ss_pred             CCCCHHHHHHHHHHHCCCEE
T ss_conf             99999999999998589769


No 132
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.70  E-value=2.8  Score=22.38  Aligned_cols=18  Identities=6%  Similarity=0.174  Sum_probs=7.5

Q ss_pred             EEEEECCCHHHHHHHHHH
Q ss_conf             999955998999999998
Q gi|254780268|r  384 KLIVHGKNRKECMMRLNR  401 (443)
Q Consensus       384 KiI~~g~~R~~Ai~~l~~  401 (443)
                      ++++.++||.++.+-+..
T Consensus       492 ~IiaRard~~~~~~L~~~  509 (615)
T PRK03562        492 QIIARARDVDHYIRLRQA  509 (615)
T ss_pred             EEEEEECCHHHHHHHHHC
T ss_conf             699983977889999978


No 133
>PRK00509 argininosuccinate synthase; Provisional
Probab=83.56  E-value=3.8  Score=21.40  Aligned_cols=34  Identities=29%  Similarity=0.453  Sum_probs=24.2

Q ss_pred             CCEEEEEECCCHHHHH-HHHHHHHC-CCEEEEECCC
Q ss_conf             9706866447099999-99988880-9659998585
Q gi|254780268|r    1 MISKILIANRGEIALR-ILRACKEL-GIPTVAVHST   34 (443)
Q Consensus         1 m~~~iLianrGeia~r-iira~~el-Gi~tv~v~s~   34 (443)
                      |+|||..|=.|=.-.- +++=++|. |+++|++..|
T Consensus         1 m~kKVvLAySGGLDTSv~l~wL~e~yg~eVia~~~d   36 (398)
T PRK00509          1 MVKKVVLAYSGGLDTSVIIKWLKEEYGCEVVAFTAD   36 (398)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf             985499990898459999999987539889999997


No 134
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=83.31  E-value=3.9  Score=21.33  Aligned_cols=56  Identities=16%  Similarity=0.348  Sum_probs=41.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCEEEE--EECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf             89999999999999886515434102458--972883499822765433201678863
Q gi|254780268|r  246 SAQDRTEIGETCVKAMKKIDYRGAGTIEF--LYENGQFYFIEMNTRLQVEHPVTEAIT  301 (443)
Q Consensus       246 ~~~~~~~i~~~A~~~~~~~g~~g~~tvEF--l~~~~~~yflEvN~Rlqveh~vte~~t  301 (443)
                      +.++..++.+...++++..|+.-.--=||  |++++++|+|.+--=+...||-.++.-
T Consensus       119 ~~~~~~~il~~~~~l~~~~glVHgDLSEyNILv~~~~~~iID~pQaV~~~hp~A~e~L  176 (190)
T cd05145         119 AEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYHDGKPYIIDVSQAVELDHPNALEFL  176 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEEECCCCHHHEEEECCCEEEEECCCCCCCCCCCHHHHH
T ss_conf             9999999999999999974921036415533897894799955761257899889999


No 135
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=82.85  E-value=4.1  Score=21.21  Aligned_cols=130  Identities=19%  Similarity=0.266  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHCCCCEEE--CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCC-CCCCCCCH
Q ss_conf             89999999870998994--5853131097666889845921626898999872189988776642244332-43334557
Q gi|254780268|r   63 IQQIVAACEVTGADAIH--PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVV-PGSGEVYP  139 (443)
Q Consensus        63 i~~ii~~a~~~~~daih--PGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~-p~~~~~~~  139 (443)
                      .+.|++.-+++|++-|+  ||.    ....|.+.+++.||.||+...|......=-..+ ++-.+.||-.+ .|-...+.
T Consensus        16 a~~i~~~L~~~GV~~vFGipG~----~~~~l~~~~~~~~i~~v~~rhE~~A~~mAdgya-r~tg~~gv~~~t~GPG~~N~   90 (572)
T PRK09259         16 FHLVIDALKLNGIDTIYGVVGI----PITDLARLAQAEGIRYIGFRHEQSAGNAAAAAG-FLTQKPGICLTVSAPGFLNG   90 (572)
T ss_pred             HHHHHHHHHHCCCCEEEECCCH----HHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHH-HHHCCCEEEEEECCHHHHHH
T ss_conf             9999999998799989968886----279999974538980982096899999999999-98689789998057189999


Q ss_pred             HHHHHHHHCCCCHHHHHCCCC-----CCC-----------------CEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             999873200330122000234-----578-----------------2168887506689999987543212589981688
Q gi|254780268|r  140 HTAMPIAKEIGFPVLVKASAG-----GGG-----------------RGMRIAYSENDLSEAIDQARSEALAAFGNDAVYI  197 (443)
Q Consensus       140 ~ea~~~a~~iGyPviiKp~~g-----GGG-----------------~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlv  197 (443)
                      -..+.-|..=+.|+++=.-..     +-+                 |-...+.+++++...+++|.+.+.+. .-++|++
T Consensus        91 ~tgl~~A~~~~~Pvl~IsG~~~~~~~~~~~g~~q~~dq~~~~~p~tk~s~~v~~~~~i~~~v~~A~~~A~~~-~pGPV~L  169 (572)
T PRK09259         91 LTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFAKAAFRVNQAQDIGIAVARAIRTAVSG-RPGGVYL  169 (572)
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEECHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHC-CCCCEEE
T ss_conf             999999983399989993737756556678874112187653032102354278667499999999999757-9971799


Q ss_pred             E
Q ss_conf             4
Q gi|254780268|r  198 E  198 (443)
Q Consensus       198 E  198 (443)
                      +
T Consensus       170 ~  170 (572)
T PRK09259        170 D  170 (572)
T ss_pred             E
T ss_conf             5


No 136
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=82.85  E-value=1.6  Score=24.18  Aligned_cols=18  Identities=11%  Similarity=0.078  Sum_probs=11.7

Q ss_pred             CCHHHHHHHHHHCCCCEE
Q ss_conf             698999999987099899
Q gi|254780268|r   61 LNIQQIVAACEVTGADAI   78 (443)
Q Consensus        61 ldi~~ii~~a~~~~~dai   78 (443)
                      ++.+.-++.|++.|-|.|
T Consensus        21 ~sw~e~~~~ak~~Gfd~i   38 (283)
T PRK13209         21 ECWLEKLRIAKTAGFDFV   38 (283)
T ss_pred             CCHHHHHHHHHHCCCCEE
T ss_conf             999999999998599879


No 137
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia.  Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent  nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having  alpha and beta subunits similar to the alpha and beta subunits of MoFe.  The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=82.40  E-value=4.2  Score=21.09  Aligned_cols=17  Identities=41%  Similarity=0.567  Sum_probs=7.8

Q ss_pred             HCHHHHHHHHHHCCCCC
Q ss_conf             18998877664224433
Q gi|254780268|r  114 GDKITAKKTAQQLGIPV  130 (443)
Q Consensus       114 gDK~~~k~~a~~~GVP~  130 (443)
                      +|-...|+++++.|+.+
T Consensus       173 ~d~~eik~ll~~~Gi~v  189 (406)
T cd01967         173 GDAWVIKPLLEELGIRV  189 (406)
T ss_pred             HHHHHHHHHHHHCCCCE
T ss_conf             13999999999859926


No 138
>PRK08329 threonine synthase; Validated
Probab=82.37  E-value=4.2  Score=21.09  Aligned_cols=32  Identities=19%  Similarity=0.259  Sum_probs=13.7

Q ss_pred             HHCCCEEECCCHHHHHHHHCHHHHHHHHHHCC
Q ss_conf             84592162689899987218998877664224
Q gi|254780268|r   96 EDHHIKFIGPSSEHIKIMGDKITAKKTAQQLG  127 (443)
Q Consensus        96 e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~G  127 (443)
                      ++.|+.|+.|.-.-....|-|-.+.+++++++
T Consensus       172 ~~~g~~~~~~~~np~~ieGqkTia~Ei~eql~  203 (348)
T PRK08329        172 RRNNIPYVSHWLNPYFLEGTKTIAYEIYEQVG  203 (348)
T ss_pred             HHCCCEECCCCCCHHHHHCCCCHHHHHHHHCC
T ss_conf             98098753765674665146627999998719


No 139
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase,  is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=82.30  E-value=4.3  Score=21.07  Aligned_cols=101  Identities=27%  Similarity=0.392  Sum_probs=50.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEE-CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf             866447099999999888809659998-5855771877675857999189985300069899999998709989945853
Q gi|254780268|r    5 ILIANRGEIALRILRACKELGIPTVAV-HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG   83 (443)
Q Consensus         5 iLianrGeia~riira~~elGi~tv~v-~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG   83 (443)
                      ||-...-+-|..+++++.+-|++.+-| .+.++.                         .+ .|+..++...|.+ -|-|
T Consensus         9 Vlr~~~~~~a~~~~~al~~~Gi~~iEitl~t~~a-------------------------~~-~i~~l~~~~~~~~-iGaG   61 (190)
T cd00452           9 VLRGDDAEDALALAEALIEGGIRAIEITLRTPGA-------------------------LE-AIRALRKEFPEAL-IGAG   61 (190)
T ss_pred             EEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHH-------------------------HH-HHHHHHHHCCCCE-EEEC
T ss_conf             9977999999999999998699889996788029-------------------------99-9999998689808-9652


Q ss_pred             HHHCCHHHHHHHHHCCCEEE-CCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf             13109766688984592162-689--899987218998877664224433243334557999873
Q gi|254780268|r   84 FLSENAKFAEILEDHHIKFI-GPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPI  145 (443)
Q Consensus        84 fLsEn~~fa~~~e~~Gi~fI-GPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~  145 (443)
                      =. -+.+-++.+.++|..|+ -|.  ++.+          +.+.+.++|.+||..  ++.|+..+
T Consensus        62 TV-~~~~~~~~a~~aGa~FivsP~~~~~v~----------~~a~~~~~~~iPGv~--TpsEi~~A  113 (190)
T cd00452          62 TV-LTPEQADAAIAAGAQFIVSPGLDPEVV----------KAANRAGIPLLPGVA--TPTEIMQA  113 (190)
T ss_pred             CC-CCHHHHHHHHHCCCCEEECCCCCHHHH----------HHHHHCCCCEECCCC--CHHHHHHH
T ss_conf             34-779999999985998997377999999----------999982996657879--99999999


No 140
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase; InterPro: IPR006406   This family represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primarily proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is IPR006405 from INTERPRO. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase. ; GO: 0004516 nicotinate phosphoribosyltransferase activity, 0019357 nicotinate nucleotide biosynthetic process.
Probab=81.63  E-value=1.4  Score=24.53  Aligned_cols=89  Identities=21%  Similarity=0.190  Sum_probs=59.3

Q ss_pred             CHHHHHHHCCCCCCCC--CCC--CCC---CEEEEECC---CCCCEEEECC--CCCCCEECCCC-----CCCEEEEEEECC
Q ss_conf             0124533024566221--111--244---21588668---9984467776--02387707776-----843389999559
Q gi|254780268|r  328 SGHAIECRINAEDPEN--FIP--NPG---EITYFHAP---GGLGIRMDSA--SYQGYTVPSYY-----DSLIAKLIVHGK  390 (443)
Q Consensus       328 ~g~aie~Ri~aEdp~~--f~P--s~G---~i~~~~~p---~~~gvRvDt~--~~~G~~i~~~y-----DsmlaKiI~~g~  390 (443)
                      +-.|+|+=|+.=+-+|  ..|  +.|   =+..|+.+   .=.|||-|||  +..|+.+..+|     ||-+.|+|+.+.
T Consensus       256 q~~Ale~W~~~y~g~nLG~ALTDt~t~DaFLrdF~~~~A~~y~GlRHDSGDP~~wg~K~~~HY~~L~iDP~f~K~~~FSD  335 (430)
T TIGR01514       256 QKVALESWINEYDGDNLGIALTDTLTTDAFLRDFSKKFAKLYDGLRHDSGDPVEWGEKAIAHYEKLGIDPKFSKLLIFSD  335 (430)
T ss_pred             HHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf             89999988865389843030341000014631168546766177620478851687799986887167860478989726


Q ss_pred             --CHHHHHHHHHHHHH-HCEE-CCCCCCHH
Q ss_conf             --98999999998765-4088-26377888
Q gi|254780268|r  391 --NRKECMMRLNRALN-EIII-DGIKTTIP  416 (443)
Q Consensus       391 --~R~~Ai~~l~~aL~-~~~I-~Gv~TN~~  416 (443)
                        |-+.|+.--..+=. .+++ -||-||+.
T Consensus       336 ~Ld~~~A~el~~~f~~nR~k~sFGIGTnLT  365 (430)
T TIGR01514       336 SLDVEKAIELSKYFKGNRVKASFGIGTNLT  365 (430)
T ss_pred             CCCHHHHHHHHHHHHHCCEEEEECCCCHHH
T ss_conf             998889999999873487687407620112


No 141
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.00  E-value=4.7  Score=20.76  Aligned_cols=124  Identities=22%  Similarity=0.252  Sum_probs=62.9

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCHHHCCCCHHHCCEEEECCCCCCC---CHH-CCHHHHHHHHH---H
Q ss_conf             706866447099999999888809--65999858557718776758579991899853---000-69899999998---7
Q gi|254780268|r    2 ISKILIANRGEIALRILRACKELG--IPTVAVHSTADSGAMHVRLADESVCIGPPSSK---DSY-LNIQQIVAACE---V   72 (443)
Q Consensus         2 ~~~iLianrGeia~riira~~elG--i~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~---~sY-ldi~~ii~~a~---~   72 (443)
                      |-||+|..+|+-.-|++.+...-+  -..|.|+..|+....++..+++.  |++.+..   -+| |.-|.++.+++   .
T Consensus         1 ~mki~vlt~g~yG~R~~~nl~~~~f~~~~v~v~~~Pe~~~~fie~P~~~--Lp~~~e~Di~va~~lHPDl~~~L~e~~~~   78 (224)
T COG1810           1 MMKILVLTDGEYGKRAVNNLACKGFKNQFVAVKEYPEELPDFIEEPEDL--LPKLPEADIVVAYGLHPDLLLALPEKAAE   78 (224)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCHHHH--CCCCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             9289999606204899876765215531589873663253001277976--67888877899951485078999999985


Q ss_pred             CCCCEEE-C---CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCC-CCCCH-HHHHHHH
Q ss_conf             0998994-5---853131097666889845921626898999872189988776642244332433-34557-9998732
Q gi|254780268|r   73 TGADAIH-P---GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGS-GEVYP-HTAMPIA  146 (443)
Q Consensus        73 ~~~daih-P---GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~-~~~~~-~ea~~~a  146 (443)
                      .+..+|. |   +=|+.   -++.+.|++.|+.|.-|.                         |+- ...+. ....+|+
T Consensus        79 ~~~~alIvp~~~~~g~r---kqL~~~~~~~g~e~~~p~-------------------------p~C~Le~~~~p~i~~F~  130 (224)
T COG1810          79 GGVKALIVPAEPPEGLR---KQLKEFCEELGVEFEAPE-------------------------PFCSLEPNENPHIDEFA  130 (224)
T ss_pred             CCCCEEEEECCCCHHHH---HHHHHHHHHCCEEEECCC-------------------------CCCCCCCCCCHHHHHHH
T ss_conf             79617998457973489---999987422360553687-------------------------65567888885799999


Q ss_pred             HCCCCHHHH
Q ss_conf             003301220
Q gi|254780268|r  147 KEIGFPVLV  155 (443)
Q Consensus       147 ~~iGyPvii  155 (443)
                      +..|.|.+=
T Consensus       131 e~FG~P~ve  139 (224)
T COG1810         131 ERFGKPEVE  139 (224)
T ss_pred             HHCCCCEEE
T ss_conf             971995599


No 142
>PRK05638 threonine synthase; Validated
Probab=80.35  E-value=4.9  Score=20.61  Aligned_cols=31  Identities=19%  Similarity=0.204  Sum_probs=14.8

Q ss_pred             HCCCEEECCCHHHHHHHHCHHHHHHHHHHCC
Q ss_conf             4592162689899987218998877664224
Q gi|254780268|r   97 DHHIKFIGPSSEHIKIMGDKITAKKTAQQLG  127 (443)
Q Consensus        97 ~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~G  127 (443)
                      +.|+-++.|...-.+..|-|..+.++++++|
T Consensus       182 ~~g~~~~~~~~nP~~iEG~KTiayEI~EQlg  212 (443)
T PRK05638        182 LNGLYNVTPEDNIIGLEGQKTIAFELWEELN  212 (443)
T ss_pred             HCCEEEECCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             5694882587772243212358999999759


No 143
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=80.06  E-value=5  Score=20.55  Aligned_cols=69  Identities=13%  Similarity=0.119  Sum_probs=46.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEE
Q ss_conf             6866447099999999888809659998585577187767585799918998530006989999999870998994
Q gi|254780268|r    4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH   79 (443)
Q Consensus         4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daih   79 (443)
                      ||+|++-|++...+.|.+.+.|...++|..+++....--..-|-.+..|.+.      |.+.+ +-|.-..+|.+.
T Consensus         2 ~IiI~GaG~vG~~La~~Ls~e~~dV~vID~d~~~~~~~~~~lDv~~i~Gd~~------~~~~L-~~Agi~~ad~~I   70 (455)
T PRK09496          2 KIIILGAGQVGGTLAERLVGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGS------HPDVL-REAGAEDADMLI   70 (455)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCEEEEEECCC------CHHHH-HHCCCCCCCEEE
T ss_conf             7999998889999999998689979999899999999886258689996689------99999-965998699999


No 144
>PRK08904 consensus
Probab=79.70  E-value=5.2  Score=20.47  Aligned_cols=120  Identities=26%  Similarity=0.336  Sum_probs=63.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEC-CCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf             8664470999999998888096599985-855771877675857999189985300069899999998709989945853
Q gi|254780268|r    5 ILIANRGEIALRILRACKELGIPTVAVH-STADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG   83 (443)
Q Consensus         5 iLianrGeia~riira~~elGi~tv~v~-s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG   83 (443)
                      |+-.+.-+-|+.+++++.+-|++++=|- +.++                      +   .+.|-. .++...|.+ -|-|
T Consensus        15 Vir~~~~~~a~~~a~al~~~Gi~~iEiTlrtp~----------------------a---~~~i~~-l~~~~p~~~-vGaG   67 (207)
T PRK08904         15 VMAIDDLSTAVDLSRALVEGGIPTLEITLRTPV----------------------G---LDAIRL-IAKEVPNAI-VGAG   67 (207)
T ss_pred             EEECCCHHHHHHHHHHHHHCCCCEEEEECCCCH----------------------H---HHHHHH-HHHHCCCCE-EEEE
T ss_conf             997699999999999999879988999579913----------------------9---999999-998689876-8553


Q ss_pred             HHHCCHHHHHHHHHCCCEEEC-CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHH-HHCCCCC
Q ss_conf             131097666889845921626-89899987218998877664224433243334557999873200330122-0002345
Q gi|254780268|r   84 FLSENAKFAEILEDHHIKFIG-PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVL-VKASAGG  161 (443)
Q Consensus        84 fLsEn~~fa~~~e~~Gi~fIG-Ps~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPvi-iKp~~gG  161 (443)
                      =. -+.+-++...++|..|+= |..       |... -+.+.+.|+|.+||.  .++.|+..+. +.|+.++ +=|+...
T Consensus        68 TV-l~~e~~~~a~~aGA~FiVSP~~-------~~~v-~~~a~~~~i~~iPGv--~TpsEi~~A~-~~G~~~vK~FPA~~~  135 (207)
T PRK08904         68 TV-TNPEQLKAVEDAGAVFAISPGL-------HESL-AKAGHNSGIPLIPGV--ATPGEIQLAL-EHGIDTLKLFPAEVV  135 (207)
T ss_pred             EC-CCHHHHHHHHHCCCCEEECCCC-------CHHH-HHHHHHCCCCEECCC--CCHHHHHHHH-HCCCCEEEECCCHHC
T ss_conf             13-6899999999849999984899-------8999-999998399765786--9999999999-879998997762220


Q ss_pred             CC
Q ss_conf             78
Q gi|254780268|r  162 GG  163 (443)
Q Consensus       162 GG  163 (443)
                      ||
T Consensus       136 GG  137 (207)
T PRK08904        136 GG  137 (207)
T ss_pred             CC
T ss_conf             88


No 145
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=79.60  E-value=5.2  Score=20.45  Aligned_cols=87  Identities=20%  Similarity=0.239  Sum_probs=40.0

Q ss_pred             EEEEEECCCHHHHHHHHHHHH---CCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEE
Q ss_conf             068664470999999998888---09659998585577187767585799918998530006989999999870998994
Q gi|254780268|r    3 SKILIANRGEIALRILRACKE---LGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH   79 (443)
Q Consensus         3 ~~iLianrGeia~riira~~e---lGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daih   79 (443)
                      +|+||.+.|+.+.++++..++   +|++.+.+.++.......  ..       +.+   .--+.+++.++++++++|-|.
T Consensus       126 rrvlIIG~g~~~~~l~~~l~~~~~~g~~vvG~~dd~~~~~~~--~~-------~~p---~lg~~~~l~~~i~~~~ideVi  193 (445)
T TIGR03025       126 RRVLIVGTGELAEELAAALSRNPDLGYRVVGFVDDRPEDRVE--VA-------GLP---VLGKLDDLVELVRAHRVDEVI  193 (445)
T ss_pred             CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC--CC-------CCC---CCCCHHHHHHHHHHCCCCEEE
T ss_conf             239999084899999999982846884899997787544455--67-------886---018899999999976998899


Q ss_pred             CCCCHHHCC---HHHHHHHHHCCCEE
Q ss_conf             585313109---76668898459216
Q gi|254780268|r   80 PGYGFLSEN---AKFAEILEDHHIKF  102 (443)
Q Consensus        80 PGyGfLsEn---~~fa~~~e~~Gi~f  102 (443)
                      =-- ..+++   .+....|+..|+.+
T Consensus       194 Ia~-p~~~~~~~~~~l~~~~~~~v~v  218 (445)
T TIGR03025       194 IAL-PLSEEARILELLLQLSDLGVDV  218 (445)
T ss_pred             EEC-CCCCHHHHHHHHHHHHHCCCEE
T ss_conf             965-8677689999999987559789


No 146
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=79.59  E-value=5.2  Score=20.44  Aligned_cols=23  Identities=17%  Similarity=0.270  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf             99999886515434102458972
Q gi|254780268|r  255 ETCVKAMKKIDYRGAGTIEFLYE  277 (443)
Q Consensus       255 ~~A~~~~~~~g~~g~~tvEFl~~  277 (443)
                      ....+..+.+||.|+-..||.=.
T Consensus       222 ~~i~~~l~~~gY~G~ig~Ey~P~  244 (258)
T PRK09997        222 DYLFNVIENSDYNGWVGCEYKPQ  244 (258)
T ss_pred             HHHHHHHHHHCCCCEEEEEEECC
T ss_conf             99999999829996688987229


No 147
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.55  E-value=5.2  Score=20.44  Aligned_cols=31  Identities=23%  Similarity=0.285  Sum_probs=20.9

Q ss_pred             CEEEEEECCC------HHHHHHHHHHHHCCCEEEEEC
Q ss_conf             7068664470------999999998888096599985
Q gi|254780268|r    2 ISKILIANRG------EIALRILRACKELGIPTVAVH   32 (443)
Q Consensus         2 ~~~iLianrG------eia~riira~~elGi~tv~v~   32 (443)
                      +|||||..|-      +.|.++.+-+++-|++++...
T Consensus         3 lk~VlIV~k~~~~~A~~~a~~l~~~L~~rGi~v~~~~   39 (304)
T PRK02645          3 LKLVIIAYKAGSPQAKEAAERCAKQLEARGIKVLMGP   39 (304)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             4599999858999999999999999998889999844


No 148
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=79.54  E-value=3.1  Score=22.04  Aligned_cols=48  Identities=25%  Similarity=0.286  Sum_probs=36.5

Q ss_pred             HHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf             220002345782168887506689999987543212589981688443420
Q gi|254780268|r  153 VLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLEN  203 (443)
Q Consensus       153 viiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~  203 (443)
                      =..|-+.+-|.+|. .|.+++||.+++++|+.....  .+.+++||=-++.
T Consensus       148 D~~kiAea~G~~g~-rV~~~~eL~~Al~~A~~~~~~--~~~P~lIeviidr  195 (202)
T cd02006         148 DHVKVAEGLGCKAI-RVTKPEELAAAFEQAKKLMAE--HRVPVVVEAILER  195 (202)
T ss_pred             CHHHHHHHCCCEEE-EECCHHHHHHHHHHHHHHHCC--CCCCEEEEEEECC
T ss_conf             99999997899899-979999999999999987514--7997899999767


No 149
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=79.11  E-value=5.4  Score=20.35  Aligned_cols=131  Identities=22%  Similarity=0.197  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHCCCCEEE--CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCC-CCCCCCCCH
Q ss_conf             89999999870998994--585313109766688984592162689899987218998877664224433-243334557
Q gi|254780268|r   63 IQQIVAACEVTGADAIH--PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPV-VPGSGEVYP  139 (443)
Q Consensus        63 i~~ii~~a~~~~~daih--PGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~-~p~~~~~~~  139 (443)
                      .|.|++.-++.|++-|+  ||=    .+..|-.++.+.|+.||+..-|......==--+ ++-.+.|+=. ..|-...+.
T Consensus        19 a~~l~~~L~~~GV~~vFGvpG~----~~~~l~dal~~~~i~~V~~rhE~~A~~mAdgYa-R~tg~pgv~~~t~GpG~~N~   93 (571)
T PRK07710         19 AQLLLEALEKEGVEVIFGYPGG----AVLPLYDALYDCGIPHILTRHEQGAIHAAEGYA-RITGNPGVVIATSGPGATNV   93 (571)
T ss_pred             HHHHHHHHHHCCCCEEEECCCC----CHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH-HHHCCCEEEEEECCHHHHHH
T ss_conf             9999999998799999984771----489999999866993993387899999999999-99799889998167289999


Q ss_pred             HHHHHHHHCCCCHHHHHCC----CCCC----------------CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             9998732003301220002----3457----------------8216888750668999998754321258998168844
Q gi|254780268|r  140 HTAMPIAKEIGFPVLVKAS----AGGG----------------GRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEK  199 (443)
Q Consensus       140 ~ea~~~a~~iGyPviiKp~----~gGG----------------G~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk  199 (443)
                      -..+.-|..=+-|+++=..    ...|                .|-...+.+++++.+.+++|.+.+.+. ..++|+++=
T Consensus        94 ~~gl~~A~~~~~Pvl~i~G~~~~~~~g~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~-~~GPV~l~i  172 (571)
T PRK07710         94 ITGLADAMIDSLPLVVFTGQVATTLIGSDAFQEADIMGLTMPVTKHNYQVRKASDLPRIIKEAFHIATTG-RPGPVVIDL  172 (571)
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHC-CCCCEEEEE
T ss_conf             9999999983999699917886022689865310388762210346355189999999999999997117-997289980


No 150
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=79.04  E-value=5.4  Score=20.33  Aligned_cols=27  Identities=30%  Similarity=0.329  Sum_probs=20.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             866447099999999888809659998
Q gi|254780268|r    5 ILIANRGEIALRILRACKELGIPTVAV   31 (443)
Q Consensus         5 iLianrGeia~riira~~elGi~tv~v   31 (443)
                      ||-...-+-|+.+++++.+-|++.+=|
T Consensus        18 Vlr~~~~~~a~~~~~al~~gGi~~iEI   44 (209)
T PRK06552         18 VVRGESKEEALKISLAVIKGGIKAIEV   44 (209)
T ss_pred             EEECCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             997289999999999999879988999


No 151
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.04  E-value=4  Score=21.27  Aligned_cols=21  Identities=38%  Similarity=0.605  Sum_probs=13.0

Q ss_pred             HHHHHHHHCCCCCCEEEEEEC
Q ss_conf             999886515434102458972
Q gi|254780268|r  257 CVKAMKKIDYRGAGTIEFLYE  277 (443)
Q Consensus       257 A~~~~~~~g~~g~~tvEFl~~  277 (443)
                      ..+.++.+||+|..++|+-.+
T Consensus       238 ~~~~L~~~gY~G~~~iE~w~~  258 (284)
T PRK13210        238 IFKTLKELNYRGPFLIEMWTE  258 (284)
T ss_pred             HHHHHHHHCCCCCEEEEEECC
T ss_conf             999999819963279999248


No 152
>PRK08401 L-aspartate oxidase; Provisional
Probab=79.02  E-value=4.5  Score=20.89  Aligned_cols=35  Identities=14%  Similarity=0.167  Sum_probs=29.8

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHH
Q ss_conf             70686644709999999988880965999858557
Q gi|254780268|r    2 ISKILIANRGEIALRILRACKELGIPTVAVHSTAD   36 (443)
Q Consensus         2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D   36 (443)
                      |..|||.+.|--.++..-.+.+.|.+++++...+-
T Consensus         1 mtdVlVVGsG~AGl~AAl~a~~~g~~v~li~k~~~   35 (464)
T PRK08401          1 MMKVGIVGGGLAGLTAAISLAKKGFDVTVIGPGSK   35 (464)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             98799989769999999999974996999958999


No 153
>PRK13820 argininosuccinate synthase; Provisional
Probab=78.92  E-value=5.4  Score=20.31  Aligned_cols=21  Identities=33%  Similarity=0.360  Sum_probs=13.1

Q ss_pred             HHCCHHHHHHHHHHCCCCEEE
Q ss_conf             006989999999870998994
Q gi|254780268|r   59 SYLNIQQIVAACEVTGADAIH   79 (443)
Q Consensus        59 sYldi~~ii~~a~~~~~daih   79 (443)
                      ..|=...++++|++.|+++|-
T Consensus        95 Rplia~~~v~~A~~~ga~aia  115 (395)
T PRK13820         95 RPLIAKKIVEVAKKEGASAIA  115 (395)
T ss_pred             HHHHHHHHHHHHHHCCCEEEE
T ss_conf             689999999999975982983


No 154
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=78.90  E-value=5.5  Score=20.30  Aligned_cols=11  Identities=36%  Similarity=0.661  Sum_probs=3.9

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999876
Q gi|254780268|r  393 KECMMRLNRAL  403 (443)
Q Consensus       393 ~~Ai~~l~~aL  403 (443)
                      ++.+.+|.+.+
T Consensus       374 ~~~ie~~~~~l  384 (429)
T PRK00045        374 EEVLEKLARSL  384 (429)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


No 155
>PRK13122 consensus
Probab=78.10  E-value=5.7  Score=20.14  Aligned_cols=173  Identities=17%  Similarity=0.150  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHH----CCCCEEECCCC-
Q ss_conf             99999999888809659998---58557718776758579991899853000698999999987----09989945853-
Q gi|254780268|r   12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEV----TGADAIHPGYG-   83 (443)
Q Consensus        12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~----~~~daihPGyG-   83 (443)
                      +--..+++++.+.|...+=+   +|||=..-+-.+.|.+.. |..      =.+.+.+++..++    .+..-|.=||- 
T Consensus        13 pd~~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIQ~A~~rA-L~~------G~~~~~~~~~l~~~r~~~~~pivlM~Y~N   85 (242)
T PRK13122         13 KDLIENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQA-IKQ------GITIDYIFNQLEKHGDQIKCNYVLMTYYN   85 (242)
T ss_pred             CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HHC------CCCHHHHHHHHHHHCCCCCCCEEEEEECH
T ss_conf             99999999999759999997898888666589999999999-976------99899999999973136798779998516


Q ss_pred             -HHHC-CHHHHHHHHHCCCE-EECCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHHH-CCCCHHHHH
Q ss_conf             -1310-97666889845921-62689--8999872189988776642244332433345579998-7320-033012200
Q gi|254780268|r   84 -FLSE-NAKFAEILEDHHIK-FIGPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAM-PIAK-EIGFPVLVK  156 (443)
Q Consensus        84 -fLsE-n~~fa~~~e~~Gi~-fIGPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~-~~a~-~iGyPviiK  156 (443)
                       +++= ...|++.|.++|+. +|=|.  .+      .....+..++++|+..++.....+.++.. ..++ .-||=.++=
T Consensus        86 ~i~~~G~~~F~~~~~~~GvdGvIipDLP~e------e~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~s~GFiY~vs  159 (242)
T PRK13122         86 IICHYGEQAFFEKCRDTGVYGLIIPDLPYE------LSQRLKQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVT  159 (242)
T ss_pred             HHHHHCHHHHHHHHHHCCCCEEECCCCCHH------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             988727999999998769986777899878------89999999986798689871899989999999982999669873


Q ss_pred             CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEE
Q ss_conf             02345782168887506689999987543212589981688443420110
Q gi|254780268|r  157 ASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRH  206 (443)
Q Consensus       157 p~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rh  206 (443)
                       ..|  --|.+ .....++.+.+++.++.+     +-+|.+-==|..+.|
T Consensus       160 -~~G--vTG~~-~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGI~~~e~  200 (242)
T PRK13122        160 -MNA--TTGQN-GAFHPELKRKIESIKAIA-----NVPVVAGFGIRTPQH  200 (242)
T ss_pred             -CCC--CCCCC-CCCCHHHHHHHHHHHHHC-----CCCEEEECCCCCHHH
T ss_conf             -354--35765-556588999999999725-----998587158799999


No 156
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=77.88  E-value=5.8  Score=20.10  Aligned_cols=96  Identities=20%  Similarity=0.174  Sum_probs=39.4

Q ss_pred             HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEE
Q ss_conf             66688984592162689899987218998877664224433243334557999873200330122000234578216888
Q gi|254780268|r   90 KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIA  169 (443)
Q Consensus        90 ~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv  169 (443)
                      ++++.++++|+.-|--|-+++    |--.+|.++-      ..|+.+...-+..+....-|--|++-|+-.-|       
T Consensus       205 ~lv~eLeeAGLdRiNlSv~aL----Dpk~Ak~L~G------~~dYdv~kvle~aE~i~~a~idvlIaPv~lPG-------  267 (414)
T COG2100         205 KLVDELEEAGLDRINLSVDAL----DPKLAKMLAG------RKDYDVKKVLEVAEYIANAGIDVLIAPVWLPG-------  267 (414)
T ss_pred             HHHHHHHHHCCCEEEEECCCC----CHHHHHHHCC------CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCC-------
T ss_conf             999999970875588620237----9889877428------40117899999999998679888983144278-------


Q ss_pred             EECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf             7506689999987543212589981688443420
Q gi|254780268|r  170 YSENDLSEAIDQARSEALAAFGNDAVYIEKYLEN  203 (443)
Q Consensus       170 ~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~  203 (443)
                      .|.+|..+.++.|..-..+ -+...+.+.+|++.
T Consensus       268 ~ND~E~~~iIe~A~~iGaG-kk~p~lgiQkyipy  300 (414)
T COG2100         268 VNDDEMPKIIEWAREIGAG-KKWPPLGIQKYIPY  300 (414)
T ss_pred             CCHHHHHHHHHHHHHHCCC-CCCCCCCEEEEEEE
T ss_conf             6817789999999984888-77998530775540


No 157
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012689    This entry represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway.; GO: 0018802 24-dihydroxyhept-2-ene-17-dioate aldolase activity, 0010124 phenylacetate catabolic process.
Probab=77.72  E-value=3.7  Score=21.54  Aligned_cols=73  Identities=21%  Similarity=0.254  Sum_probs=38.2

Q ss_pred             ECCCHHHHHHHHHHHH--CCCEEEE--E--CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf             4470999999998888--0965999--8--58557718776758579991899853000698999999987099899458
Q gi|254780268|r    8 ANRGEIALRILRACKE--LGIPTVA--V--HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG   81 (443)
Q Consensus         8 anrGeia~riira~~e--lGi~tv~--v--~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG   81 (443)
                      .+.=|=|-..++|.|=  +|||-|.  +  -|-=.+.+-|++.|||-+|+=  --.|+--=++.|-+|+.-.|+|+|+=|
T Consensus        93 i~~aeqA~~~V~A~rYPP~GiRGVGSALARASrwNrIp~Ylq~AdeeiClL--lQVEtr~al~NL~~Ia~VeGVDGVFiG  170 (249)
T TIGR02311        93 IETAEQAEAAVKATRYPPKGIRGVGSALARASRWNRIPDYLQQADEEICLL--LQVETREALENLEEIAAVEGVDGVFIG  170 (249)
T ss_pred             HCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHCCHHHHEEHH--HHHHHHHHHHHHHHHHCCCCCCCEEEC
T ss_conf             037789999998506951951340078776322176125760521320232--326579988621577501786624757


Q ss_pred             C
Q ss_conf             5
Q gi|254780268|r   82 Y   82 (443)
Q Consensus        82 y   82 (443)
                      -
T Consensus       171 P  171 (249)
T TIGR02311       171 P  171 (249)
T ss_pred             C
T ss_conf             1


No 158
>pfam01326 PPDK_N Pyruvate phosphate dikinase, PEP/pyruvate binding domain. This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP).
Probab=77.33  E-value=6  Score=19.99  Aligned_cols=45  Identities=18%  Similarity=0.403  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCC
Q ss_conf             45588999999999999988651543410245897288349982276
Q gi|254780268|r  242 SPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNT  288 (443)
Q Consensus       242 ap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~  288 (443)
                      .|.|+++..++|.+.+.++-+..|+-  --|||.+++|++|++-.-|
T Consensus       257 ~~~l~~~~~~~L~~~~~~lE~~~g~p--qDIEwai~~g~l~iLQ~RP  301 (327)
T pfam01326       257 EPVLTDAQLQELAELAKRLEAHFGSP--QDIEWAIDGGRLYILQARP  301 (327)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCC--CEEEEEEECCEEEEEECCC
T ss_conf             66799999999999999999982998--2317999999999996426


No 159
>pfam00148 Oxidored_nitro Nitrogenase component 1 type Oxidoreductase.
Probab=76.93  E-value=6.2  Score=19.92  Aligned_cols=17  Identities=41%  Similarity=0.589  Sum_probs=7.8

Q ss_pred             HCHHHHHHHHHHCCCCC
Q ss_conf             18998877664224433
Q gi|254780268|r  114 GDKITAKKTAQQLGIPV  130 (443)
Q Consensus       114 gDK~~~k~~a~~~GVP~  130 (443)
                      +|-...|+++++.|+.+
T Consensus       159 ~d~~ei~~ll~~~Gi~v  175 (398)
T pfam00148       159 GDLREIKRLLEKLGIEV  175 (398)
T ss_pred             CCHHHHHHHHHHCCCCE
T ss_conf             66999999999839935


No 160
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=76.87  E-value=5.8  Score=20.09  Aligned_cols=34  Identities=18%  Similarity=0.364  Sum_probs=28.3

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCC--EEEEECCC
Q ss_conf             97068664470999999998888096--59998585
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGI--PTVAVHST   34 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi--~tv~v~s~   34 (443)
                      ||+||+|.+=|-|.-=+.+++|+.|+  +.+++..+
T Consensus         5 ~f~~I~IiGlGLIGgSlA~alk~~~~~~~I~g~d~~   40 (307)
T PRK07502          5 LFDRVALIGLGLIGSSLARAIRRQGLAGEIVGAARS   40 (307)
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             456689992787999999999854998579998499


No 161
>pfam02571 CbiJ Precorrin-6x reductase CbiJ/CobK. This family consists of Precorrin-6x reductase EC:1.3.1.54. This enzyme catalyses the reaction: precorrin-6Y + NADP(+) <= precorrin-6X + NADPH. CbiJ and CobK both catalyse the reduction of macocycle in the colbalmin biosynthesis pathway.
Probab=76.86  E-value=6.2  Score=19.90  Aligned_cols=121  Identities=21%  Similarity=0.154  Sum_probs=62.3

Q ss_pred             EEEE-ECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE----
Q ss_conf             6866-44709999999988880965999858557718776758579991899853000698999999987099899----
Q gi|254780268|r    4 KILI-ANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI----   78 (443)
Q Consensus         4 ~iLi-anrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai----   78 (443)
                      |||| ++-+| +..+.+.+.+.|+-+|+...-.....+.  .....+..|+      ..|.+.+.+.++++++++|    
T Consensus         2 ~IlilgGT~e-~r~la~~L~~~g~~~v~t~~~~~~~~~~--~~~~~~~~G~------l~~~~~m~~~i~~~~i~~vIDAT   72 (246)
T pfam02571         2 RILILGGTTE-ARALAAALAAAGVVSVVTSLAGRTAAPR--LPPLPVRVGG------FGGADGLAAYLREEGIDAVIDAT   72 (246)
T ss_pred             EEEEEEECHH-HHHHHHHHHHCCCEEEEECCCHHHCCCC--CCCCCEEECC------CCCHHHHHHHHHHCCCCEEEECC
T ss_conf             6999973689-9999999985698799984755443766--7885089799------89999999999977997999899


Q ss_pred             ECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf             458531310976668898459216268989998721899887766422443324333455799987320033
Q gi|254780268|r   79 HPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIG  150 (443)
Q Consensus        79 hPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iG  150 (443)
                      ||==--.|+|  ..++|++.||+++-=.             |.-..  -.+...|..+.+.+++...+.+.+
T Consensus        73 HPfA~~is~n--a~~a~~~~~ipyiR~e-------------Rp~~~--~~~~d~~~~v~s~~ea~~~l~~~~  127 (246)
T pfam02571        73 HPFAAQISRN--AAAACKELGVPLLRLE-------------RPAWQ--PGPGDRWIYVDSLAEAAAALAELP  127 (246)
T ss_pred             CCCHHHHHHH--HHHHHHHHCCCEEEEC-------------CCCCC--CCCCCCEEEECCHHHHHHHHHHCC
T ss_conf             9968999999--9999998599689960-------------62126--788987799799999999876467


No 162
>PTZ00081 enolase (2-phospho-D-glycerate hydrolase); Provisional
Probab=76.61  E-value=6.3  Score=19.86  Aligned_cols=20  Identities=30%  Similarity=0.318  Sum_probs=14.4

Q ss_pred             EEEEC-CCHHHHHHHHHHHHH
Q ss_conf             99955-998999999998765
Q gi|254780268|r  385 LIVHG-KNRKECMMRLNRALN  404 (443)
Q Consensus       385 iI~~g-~~R~~Ai~~l~~aL~  404 (443)
                      .|-.| +.|.|.+.|..|-|+
T Consensus       401 ~iK~G~~~r~ER~aKyNrLLr  421 (442)
T PTZ00081        401 QIKTGAPCRSERNAKYNQLLR  421 (442)
T ss_pred             CEECCCCCCHHHHHHHHHHHH
T ss_conf             203389841788999999999


No 163
>KOG2270 consensus
Probab=76.53  E-value=6.3  Score=19.84  Aligned_cols=50  Identities=22%  Similarity=0.401  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEEE--EECCCCEEEEECCCCCCCCCHHH
Q ss_conf             999999999999886515434102458--97288349982276543320167
Q gi|254780268|r  248 QDRTEIGETCVKAMKKIDYRGAGTIEF--LYENGQFYFIEMNTRLQVEHPVT  297 (443)
Q Consensus       248 ~~~~~i~~~A~~~~~~~g~~g~~tvEF--l~~~~~~yflEvN~Rlqveh~vt  297 (443)
                      +..+.+..+-..+.+..+++.+---||  |+-+|++|+|.|.--+--.||-+
T Consensus       268 ~~Y~~~v~~MR~lY~~c~LVHADLSEfN~LyhdG~lyiIDVSQSVE~DHP~a  319 (520)
T KOG2270         268 ELYQQCVRIMRRLYQKCRLVHADLSEFNLLYHDGKLYIIDVSQSVEHDHPHA  319 (520)
T ss_pred             HHHHHHHHHHHHHHHHHCEECCCHHHHHHEEECCEEEEEECCCCCCCCCHHH
T ss_conf             9999999999999987550015565531137778799997643346788058


No 164
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.32  E-value=6.4  Score=19.81  Aligned_cols=121  Identities=22%  Similarity=0.285  Sum_probs=65.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCH
Q ss_conf             86644709999999988880965999858557718776758579991899853000698999999987099899458531
Q gi|254780268|r    5 ILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGF   84 (443)
Q Consensus         5 iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGf   84 (443)
                      |+-...-+-|.++++++.+-|++.+=|--+    ++                     +.-.+|+..+++..|. .-|-|=
T Consensus        20 Vlr~~~~~~a~~i~~al~~gGi~~iEiTl~----tp---------------------~a~~~I~~l~~~~p~~-~vGaGT   73 (212)
T PRK05718         20 VIVINKLEDAVPLAKALVAGGLPVLEVTLR----TP---------------------AALEAIRAIRKEVPEA-LIGAGT   73 (212)
T ss_pred             EEECCCHHHHHHHHHHHHHCCCCEEEEECC----CC---------------------HHHHHHHHHHHHCCCC-EEEEEE
T ss_conf             997489999999999999879978999578----96---------------------1999999999758981-796533


Q ss_pred             HHCCHHHHHHHHHCCCEEEC-CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHH-HHCCCCCC
Q ss_conf             31097666889845921626-89899987218998877664224433243334557999873200330122-00023457
Q gi|254780268|r   85 LSENAKFAEILEDHHIKFIG-PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVL-VKASAGGG  162 (443)
Q Consensus        85 LsEn~~fa~~~e~~Gi~fIG-Ps~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPvi-iKp~~gGG  162 (443)
                      . -+.+-++.+.++|..|+= |..       |+.. -+.+.+.|+|.+||.  .++.|+..+. +.|+-.+ +=|+...|
T Consensus        74 V-~~~e~~~~a~~aGA~FiVSP~~-------~~~v-~~~a~~~~i~~iPGv--~TpsEi~~A~-~~G~~~vK~FPA~~~g  141 (212)
T PRK05718         74 V-LNPEQLAQAIEAGAQFIVSPGL-------TPPL-LKACQDGPIPLIPGV--NTPSELMLAM-ELGLRTFKFFPAEASG  141 (212)
T ss_pred             E-CCHHHHHHHHHCCCCEEECCCC-------CHHH-HHHHHHCCCCEECCC--CCHHHHHHHH-HCCCCEEEECCCCCCC
T ss_conf             1-3488999999849989984899-------8999-999998199765786--9999999999-8799989978761017


Q ss_pred             C
Q ss_conf             8
Q gi|254780268|r  163 G  163 (443)
Q Consensus       163 G  163 (443)
                      |
T Consensus       142 G  142 (212)
T PRK05718        142 G  142 (212)
T ss_pred             C
T ss_conf             9


No 165
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=76.21  E-value=6.4  Score=19.78  Aligned_cols=92  Identities=24%  Similarity=0.311  Sum_probs=54.0

Q ss_pred             EEEEC-CCHHHHHHHHHHHHCCCEEEEECCCHHHCC-CCHHH-CCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf             86644-709999999988880965999858557718-77675-8579991899853000698999999987099899458
Q gi|254780268|r    5 ILIAN-RGEIALRILRACKELGIPTVAVHSTADSGA-MHVRL-ADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG   81 (443)
Q Consensus         5 iLian-rGeia~riira~~elGi~tv~v~s~~D~~a-~~~~~-ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG   81 (443)
                      |||.+ .|-+...+++++.+.|++..++--+++... ..... .-+.+. +      .|.|.+.+.++.+  |+|+|+--
T Consensus         1 IlV~GatG~iG~~vv~~L~~~g~~Vr~l~R~~~~~~~~~l~~~gve~v~-g------D~~d~~sl~~al~--gvd~v~~~   71 (232)
T pfam05368         1 ILVFGATGYQGGSVVRASLKAGHPVRALVRDPKSELAKSLKAAGVELVE-G------DLDDHESLVEALK--GVDVVFSV   71 (232)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCEEEE-E------CCCCHHHHHHHHC--CCCEEEEE
T ss_conf             0998968289999999998589938999718736656666417988999-0------6888789999967--99889991


Q ss_pred             CCHHHC-----CHHHHHHHHHCCCEEECC
Q ss_conf             531310-----976668898459216268
Q gi|254780268|r   82 YGFLSE-----NAKFAEILEDHHIKFIGP  105 (443)
Q Consensus        82 yGfLsE-----n~~fa~~~e~~Gi~fIGP  105 (443)
                      .++..+     ...+.+++.++|++.+=+
T Consensus        72 ~~~~~~~~~~~~~~~~~AA~~aGVk~~V~  100 (232)
T pfam05368        72 TGFWLSKEIEDGKKLADAAKEAGVKHFIP  100 (232)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             58874177999999999999739983455


No 166
>PRK08104 consensus
Probab=76.07  E-value=6.5  Score=19.76  Aligned_cols=120  Identities=22%  Similarity=0.288  Sum_probs=66.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEC-CCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf             8664470999999998888096599985-855771877675857999189985300069899999998709989945853
Q gi|254780268|r    5 ILIANRGEIALRILRACKELGIPTVAVH-STADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG   83 (443)
Q Consensus         5 iLianrGeia~riira~~elGi~tv~v~-s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG   83 (443)
                      |+-.+.-+-|+++++++.+-|++.+=|- +.++                      +   .+.| +..++...|.+ -|-|
T Consensus        20 Vir~~~~~~a~~la~al~~gGi~~iEiTlrt~~----------------------a---~~~I-~~l~~~~p~~~-vGaG   72 (212)
T PRK08104         20 VIVINKLEHAVPLAKALVAGGVRVLEVTLRTPC----------------------A---LEAI-RAIAKEVPEAI-VGAG   72 (212)
T ss_pred             EEECCCHHHHHHHHHHHHHCCCCEEEEECCCCH----------------------H---HHHH-HHHHHHCCCCE-EEEE
T ss_conf             997799999999999999879988999688814----------------------9---9999-99998689856-8542


Q ss_pred             HHHCCHHHHHHHHHCCCEEE-CCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHH-HHCCCCC
Q ss_conf             13109766688984592162-689899987218998877664224433243334557999873200330122-0002345
Q gi|254780268|r   84 FLSENAKFAEILEDHHIKFI-GPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVL-VKASAGG  161 (443)
Q Consensus        84 fLsEn~~fa~~~e~~Gi~fI-GPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPvi-iKp~~gG  161 (443)
                      =. -+.+-++.+.++|..|+ -|..       |+... +.+.+.++|.+||.  .++.|+..+. +.|+.++ +=|+...
T Consensus        73 TV-~~~e~~~~ai~aGA~FiVSP~~-------~~~v~-~~a~~~~i~~iPGv--~TpsEi~~A~-~~G~~~vKlFPA~~~  140 (212)
T PRK08104         73 TV-LNPQQLAEVTEAGAQFAISPGL-------TEELL-KAATEGTIPLIPGI--STVSELMLGM-DYGLTEFKFFPAEAN  140 (212)
T ss_pred             EC-CCHHHHHHHHHCCCCEEECCCC-------CHHHH-HHHHHCCCCEECCC--CCHHHHHHHH-HCCCCEEEECCCCCC
T ss_conf             02-6799999999859999984899-------99999-99998299765676--9999999999-879997997876213


Q ss_pred             CC
Q ss_conf             78
Q gi|254780268|r  162 GG  163 (443)
Q Consensus       162 GG  163 (443)
                      ||
T Consensus       141 gG  142 (212)
T PRK08104        141 GG  142 (212)
T ss_pred             CC
T ss_conf             74


No 167
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.01  E-value=6.5  Score=19.75  Aligned_cols=107  Identities=20%  Similarity=0.288  Sum_probs=57.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEC-CCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf             8664470999999998888096599985-855771877675857999189985300069899999998709989945853
Q gi|254780268|r    5 ILIANRGEIALRILRACKELGIPTVAVH-STADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG   83 (443)
Q Consensus         5 iLianrGeia~riira~~elGi~tv~v~-s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG   83 (443)
                      ||-...-+-|+.+++++.+-|++.+=|- +.|+                          .-.+|+..++.-.|.+ -|-|
T Consensus        18 Vlr~~~~~~a~~~~~al~~gGi~~iEiTl~t~~--------------------------a~~~I~~l~~~~p~~~-iGaG   70 (210)
T PRK07455         18 VIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQ--------------------------PAELISQLREKLPECI-IGTG   70 (210)
T ss_pred             EEECCCHHHHHHHHHHHHHCCCCEEEEECCCCC--------------------------HHHHHHHHHHHCCCCE-EEEE
T ss_conf             997599999999999999879988999689988--------------------------9999999998789968-9888


Q ss_pred             HHHCCHHHHHHHHHCCCEEE-CC--CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf             13109766688984592162-68--98999872189988776642244332433345579998732003301
Q gi|254780268|r   84 FLSENAKFAEILEDHHIKFI-GP--SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFP  152 (443)
Q Consensus        84 fLsEn~~fa~~~e~~Gi~fI-GP--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyP  152 (443)
                      =. -+.+-++...++|..|+ -|  +++.+          +.+.+.|+|.+||.  .++.|+..+- +.|+.
T Consensus        71 TV-~~~e~~~~a~~aGA~FiVSP~~~~~vi----------~~a~~~~i~~iPGv--~TpsEi~~A~-~~G~~  128 (210)
T PRK07455         71 TL-LTLEDLEEAIAAGAQFCFTPHVDLELI----------QAAVAADIPIIPGA--LTPTEIVTAW-QAGAS  128 (210)
T ss_pred             EC-CCHHHHHHHHHCCCCEEECCCCCHHHH----------HHHHHCCCCEECCC--CCHHHHHHHH-HCCCC
T ss_conf             18-789999999986999998688889999----------99998299765886--9999999999-86998


No 168
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=75.76  E-value=4.6  Score=20.81  Aligned_cols=37  Identities=32%  Similarity=0.319  Sum_probs=33.1

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCC
Q ss_conf             6866447099999999888809659998585577187
Q gi|254780268|r    4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAM   40 (443)
Q Consensus         4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~   40 (443)
                      ||+.++..+.++.+.+++.+.+.+.++|.|.||+.+-
T Consensus         2 kI~f~Gt~~fs~~~L~~L~~~~~~i~~Vvt~pdk~~g   38 (309)
T PRK00005          2 RIVFMGTPEFAVPSLKALLESGHEVVAVVTQPDRPAG   38 (309)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf             8999889889999999999789947999929998668


No 169
>PRK07053 glutamine amidotransferase; Provisional
Probab=75.64  E-value=6.7  Score=19.68  Aligned_cols=89  Identities=18%  Similarity=0.165  Sum_probs=54.9

Q ss_pred             CCEEEEEECCCHH--HHHHHHHHHHCCCEEEEECCCH-HHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCE
Q ss_conf             9706866447099--9999998888096599985855-771877675857999189985300069899999998709989
Q gi|254780268|r    1 MISKILIANRGEI--ALRILRACKELGIPTVAVHSTA-DSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADA   77 (443)
Q Consensus         1 m~~~iLianrGei--a~riira~~elGi~tv~v~s~~-D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~da   77 (443)
                      |||||||..--++  -=.+-+-+++.|++.-.+.... +...+.....|-.+.+|++...  |-              |.
T Consensus         1 mmk~ilvlqH~~~E~pG~i~~~l~~~g~~~~~~~~~~~~~~p~~~~~~d~livlGGpms~--~d--------------~~   64 (235)
T PRK07053          1 MMKTAVAIRHVAFEDLGSFEQVLGERGYRVRYVDVGVDDLEVLDALEPDLLVVLGGPIGV--YD--------------DA   64 (235)
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCC--CC--------------CC
T ss_conf             995399996899889869999999789959999678898899996667999993899898--87--------------76


Q ss_pred             EECCCCHHHCCHHHHHHHHHCCCEEECCCHH
Q ss_conf             9458531310976668898459216268989
Q gi|254780268|r   78 IHPGYGFLSENAKFAEILEDHHIKFIGPSSE  108 (443)
Q Consensus        78 ihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~  108 (443)
                      -   |-+|.+-.+|.+.+-+.|++++|-+--
T Consensus        65 ~---~Pwl~~e~~lIr~a~~~~~PvLGIClG   92 (235)
T PRK07053         65 L---YPFLAPEIALLRQRLAAGLPTLGICLG   92 (235)
T ss_pred             C---CCCHHHHHHHHHHHHHCCCCEEEECHH
T ss_conf             6---855899999999999869988998473


No 170
>pfam00208 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase.
Probab=75.43  E-value=6.7  Score=19.65  Aligned_cols=57  Identities=19%  Similarity=0.244  Sum_probs=42.5

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCC
Q ss_conf             06866447099999999888809659998585577187767585799918998530006989999999870998
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGAD   76 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~d   76 (443)
                      +|+.|-+-|-.+..+.+.+.++|.+.|+| ||.+          -.++-+      .=+|++.|.+...+.+..
T Consensus        33 ~~v~IqGfGnVG~~~a~~l~~~Gakvvav-sD~~----------G~i~~~------~Gldi~~l~~~~~~~~~~   89 (237)
T pfam00208        33 KTVAVQGFGNVGSYAAEKLLELGAKVVAV-SDSS----------GYIYDP------NGIDIEELLELKEEGGGR   89 (237)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEE-ECCC----------CEEECC------CCCCHHHHHHHHHHHCCE
T ss_conf             99999898899999999999879969999-8287----------679999------999999999999971984


No 171
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=75.20  E-value=6.8  Score=19.61  Aligned_cols=46  Identities=15%  Similarity=0.317  Sum_probs=20.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHH-CCEEE
Q ss_conf             68664470999999998888096599985855771877675-85799
Q gi|254780268|r    4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRL-ADESV   49 (443)
Q Consensus         4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~-ADe~~   49 (443)
                      +|+|.+-|=.+.-.++-++-||.+++++-..+|......++ ||+.+
T Consensus       169 ~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i  215 (339)
T COG1064         169 WVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVI  215 (339)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEE
T ss_conf             99998774899999999998699699995787799999984882899


No 172
>PRK09989 hypothetical protein; Provisional
Probab=75.13  E-value=6.9  Score=19.60  Aligned_cols=22  Identities=14%  Similarity=0.193  Sum_probs=16.6

Q ss_pred             HHHHHHHHHCCCCCCEEEEEEC
Q ss_conf             9999886515434102458972
Q gi|254780268|r  256 TCVKAMKKIDYRGAGTIEFLYE  277 (443)
Q Consensus       256 ~A~~~~~~~g~~g~~tvEFl~~  277 (443)
                      .-.+..+.+||.|+-..||.-.
T Consensus       223 ~if~~l~~~GY~G~ig~EY~P~  244 (258)
T PRK09989        223 WLFRLFDEVGYQGWIGCEYKPR  244 (258)
T ss_pred             HHHHHHHHHCCCCEEEEEEECC
T ss_conf             9999999849997477887349


No 173
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=74.93  E-value=6.9  Score=19.56  Aligned_cols=11  Identities=18%  Similarity=0.462  Sum_probs=5.0

Q ss_pred             CCCEEEEECCC
Q ss_conf             44215886689
Q gi|254780268|r  348 PGEITYFHAPG  358 (443)
Q Consensus       348 ~G~i~~~~~p~  358 (443)
                      .|++..+-.|.
T Consensus       269 gG~iv~~G~~~  279 (358)
T TIGR03451       269 AGTVVLVGVPT  279 (358)
T ss_pred             CCEEEEEECCC
T ss_conf             96999992258


No 174
>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]
Probab=74.79  E-value=4.9  Score=20.61  Aligned_cols=54  Identities=17%  Similarity=0.287  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCEEEE--EECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf             9999999999999886515434102458--97288349982276543320167886
Q gi|254780268|r  247 AQDRTEIGETCVKAMKKIDYRGAGTIEF--LYENGQFYFIEMNTRLQVEHPVTEAI  300 (443)
Q Consensus       247 ~~~~~~i~~~A~~~~~~~g~~g~~tvEF--l~~~~~~yflEvN~Rlqveh~vte~~  300 (443)
                      ....+.+.++..++.+..+++..--=||  |+.+|++|||.+--=.-..||-...-
T Consensus       169 ~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~~~~p~iID~~QaV~~~hp~a~e~  224 (268)
T COG1718         169 EGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVHDGEPYIIDVSQAVTIDHPNAFEF  224 (268)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEEECCEEEEEECCCCCCCCCCCHHHH
T ss_conf             99999999999999986294113532350677799079998832214679756899


No 175
>TIGR02776 NHEJ_ligase_prk DNA ligase D; InterPro: IPR014143   Members of this entry are DNA ligases involved in the repair of DNA double-stranded breaks by non-homologous end joining (NheJ). The system of the bacterial Ku protein (IPR009187 from INTERPRO) plus this DNA ligase is seen in about 200f bacterial genomes to date and at least one archaeon (Archeoglobus fulgidus). This entry describes a central and C-terminal domain. These two domains may be permuted, as in genus Mycobacterium, or divided into tandem ORFs. An additional N-terminal 3 -phosphoesterase (PE) domain (IPR014144 from INTERPRO) is present in some members of this ligase. Most examples of genes for this ligase are adjacent to the gene for Ku..
Probab=74.59  E-value=6.4  Score=19.81  Aligned_cols=59  Identities=15%  Similarity=0.271  Sum_probs=34.7

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-CCEEEEECCCCCCCCCHHHHHHHCCCCHH
Q ss_conf             5540344558899999999999998865154341024589728-83499822765433201678863256201
Q gi|254780268|r  236 IWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYEN-GQFYFIEMNTRLQVEHPVTEAITGIDLVH  307 (443)
Q Consensus       236 iiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~-~~~yflEvN~Rlqveh~vte~~tgvdlv~  307 (443)
                      |+-.=|+|.+.=...-+.....+.++.+||...     |+=++ |+        =|||-.|++...-..|=|+
T Consensus       486 VfDLDP~~~~~f~~~veAA~~~k~~Ld~LgL~~-----F~KTSGGK--------Glhv~vPL~~~~~~w~~~k  545 (645)
T TIGR02776       486 VFDLDPPPGVAFKLVVEAAQLMKQLLDELGLES-----FVKTSGGK--------GLHVVVPLRPNTATWDEVK  545 (645)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCCC--------EEEEEEEECCCCCCHHHHH
T ss_conf             872688871207999999999999887616634-----23016896--------0389985168887989999


No 176
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=74.58  E-value=6.6  Score=19.73  Aligned_cols=104  Identities=19%  Similarity=0.287  Sum_probs=49.4

Q ss_pred             HHHHHHHHHCCCEEEEECCCHHHCCC-C--HH----HCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE--EC-----
Q ss_conf             99999888809659998585577187-7--67----58579991899853000698999999987099899--45-----
Q gi|254780268|r   15 LRILRACKELGIPTVAVHSTADSGAM-H--VR----LADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI--HP-----   80 (443)
Q Consensus        15 ~riira~~elGi~tv~v~s~~D~~a~-~--~~----~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai--hP-----   80 (443)
                      +++.+.|.+.|...|.++.-+|+..- +  +.    ..+.-++|.+.+       -+..+++|++.+++.+  -|     
T Consensus        27 ~~~a~~~~~~Ga~gITvH~R~DrRHI~~~Dv~~l~~~~~~~lNiE~ap-------t~e~i~ia~~~kP~qvtLVPe~r~e   99 (240)
T PRK05265         27 VRAALIAEEAGADGITVHLREDRRHIRDRDVRRLRETLKTRLNLEMAA-------TEEMLDIALEIKPHQVTLVPEKREE   99 (240)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEECCC-------CHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             999999998399858952688634466256999998648636871188-------1889999998499859988899886


Q ss_pred             -----CCCHHHCCH---HHHHHHHHCCCE---EECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             -----853131097---666889845921---6268989998721899887766422443324333
Q gi|254780268|r   81 -----GYGFLSENA---KFAEILEDHHIK---FIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG  135 (443)
Q Consensus        81 -----GyGfLsEn~---~fa~~~e~~Gi~---fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~  135 (443)
                           ||-+.+...   .+.+.+.+.|+.   ||-|.++.++.          +.+.|+..+..++
T Consensus       100 ~TTegGld~~~~~~~L~~~i~~lk~~gIrvSLFiDPd~~~i~~----------a~~~Gad~VElhT  155 (240)
T PRK05265        100 LTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPDPEQIEA----------AAEVGADRIELHT  155 (240)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH----------HHHHCCCEEEEEC
T ss_conf             2678893776578999999999986598179972798789999----------9984939999834


No 177
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=74.26  E-value=7.2  Score=19.45  Aligned_cols=30  Identities=7%  Similarity=0.087  Sum_probs=19.4

Q ss_pred             EEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             88875066899999875432125899816884
Q gi|254780268|r  167 RIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       167 ~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      ..+.+++++.+.+++|.+.+.+  +.++|+++
T Consensus       127 ~~v~~~~~~~~~l~~A~~~A~~--~rGPV~l~  156 (579)
T TIGR03457       127 GHVRHPSRMAEVLNRCFERAWR--EMGPAQLN  156 (579)
T ss_pred             EEECCHHHHHHHHHHHHHHHHC--CCCCEEEC
T ss_conf             9969999999999999999972--89977976


No 178
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=74.24  E-value=7.2  Score=19.44  Aligned_cols=14  Identities=29%  Similarity=0.536  Sum_probs=7.0

Q ss_pred             CCCCCEEEEECCCC
Q ss_conf             12442158866899
Q gi|254780268|r  346 PNPGEITYFHAPGG  359 (443)
Q Consensus       346 Ps~G~i~~~~~p~~  359 (443)
                      -..|++..+-.|++
T Consensus       254 ~~gG~vv~~G~~~~  267 (341)
T PRK05396        254 NHGGRIAMLGIPPG  267 (341)
T ss_pred             HCCCEEEEEECCCC
T ss_conf             35989999955799


No 179
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=74.24  E-value=7.2  Score=19.44  Aligned_cols=103  Identities=20%  Similarity=0.333  Sum_probs=49.5

Q ss_pred             HHHHHHHHHCCCEEEEECCCHHHCCCC---HHH----CCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE--EC-----
Q ss_conf             999998888096599985855771877---675----8579991899853000698999999987099899--45-----
Q gi|254780268|r   15 LRILRACKELGIPTVAVHSTADSGAMH---VRL----ADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI--HP-----   80 (443)
Q Consensus        15 ~riira~~elGi~tv~v~s~~D~~a~~---~~~----ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai--hP-----   80 (443)
                      +++.+.|.+.|...|.++.-+|+..-.   +..    .+--++|.+.+       -+.++++|.+.+++.+  -|     
T Consensus        24 ~~~a~~~~~~GadgITvHlR~DrRHI~~~Dv~~l~~~~~~~lNlE~a~-------~~emi~ia~~~kP~~vtLVPe~r~e   96 (234)
T cd00003          24 VEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVRTELNLEMAP-------TEEMLEIALEVKPHQVTLVPEKREE   96 (234)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEECCCC-------CHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             999999998399858952488766675457999998658554661279-------3899999998499878987888786


Q ss_pred             -----CCCHHHCCH---HHHHHHHHCCCE---EECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCC
Q ss_conf             -----853131097---666889845921---626898999872189988776642244332433
Q gi|254780268|r   81 -----GYGFLSENA---KFAEILEDHHIK---FIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGS  134 (443)
Q Consensus        81 -----GyGfLsEn~---~fa~~~e~~Gi~---fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~  134 (443)
                           ||-+.+...   .+.+.+.+.|+.   ||-|.++.++.          +.+.|+..+..+
T Consensus        97 lTTegGld~~~~~~~L~~~i~~lk~~~IrvSLFIDPd~~qi~~----------a~~~Gad~VElh  151 (234)
T cd00003          97 LTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPDPEQIEA----------AKEVGADRVELH  151 (234)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH----------HHHHCCCEEEEE
T ss_conf             4178892665478899999999986598279972798789999----------998493999982


No 180
>TIGR02643 T_phosphoryl thymidine phosphorylase; InterPro: IPR013465    Thymidine phosphorylase (alternate name: pyrimidine phosphorylase) 2.4.2.4 from EC is involved, in E. coli and other Proteobacteria, in (deoxy)nucleotide degradation. It is often encoded in an operon together with a deoxyribose-phosphate aldolase, a phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (2.4.2.2 from EC); the naming convention here follows standard literature practice.; GO: 0009032 thymidine phosphorylase activity.
Probab=74.16  E-value=7.2  Score=19.43  Aligned_cols=99  Identities=23%  Similarity=0.367  Sum_probs=56.5

Q ss_pred             CCCEEECCCCHHHCCHHHHHHHHHCCCEEECCC-------------------HHHHHHHHCHHHHHHHHHHCCCCCC---
Q ss_conf             998994585313109766688984592162689-------------------8999872189988776642244332---
Q gi|254780268|r   74 GADAIHPGYGFLSENAKFAEILEDHHIKFIGPS-------------------SEHIKIMGDKITAKKTAQQLGIPVV---  131 (443)
Q Consensus        74 ~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs-------------------~~ai~~~gDK~~~k~~a~~~GVP~~---  131 (443)
                      +-|+| |||-...++.-|-+.+.+.|+-+||=+                   .++|-+.-==+.+|++|.-++.=+.   
T Consensus       125 KLeaI-PGY~~~Pd~~lFR~~v~~vG~AIIGQT~~LAPADkRlYA~RDVTATVeSipLITASILsKKLAaGL~~LVlDVK  203 (440)
T TIGR02643       125 KLEAI-PGYDVAPDPELFRRVVKDVGVAIIGQTADLAPADKRLYAIRDVTATVESIPLITASILSKKLAAGLDALVLDVK  203 (440)
T ss_pred             HHCCC-CCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             32268-98888988789999998759468605623361002310221322221345778899999999832100043354


Q ss_pred             --CCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHH
Q ss_conf             --43334557999873200330122000234578216888750668999998
Q gi|254780268|r  132 --PGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQ  181 (443)
Q Consensus       132 --p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~  181 (443)
                        -|..-.+.++..+.|++|        +..+.|-|++.----.|..+.+-.
T Consensus       204 vGnGAFM~~~~~s~~LA~sl--------V~VanGAGv~TtALiTdMNq~La~  247 (440)
T TIGR02643       204 VGNGAFMPSYEESEELARSL--------VEVANGAGVRTTALITDMNQPLAS  247 (440)
T ss_pred             ECCCCCCCCHHHHHHHHHHH--------HHHHCCCCCEEEEEEHHCCHHHHH
T ss_conf             05763466778999999999--------997438870123210101135353


No 181
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=73.78  E-value=6.8  Score=19.62  Aligned_cols=37  Identities=16%  Similarity=0.148  Sum_probs=21.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHH--CEECCCCCCHHHHHHH
Q ss_conf             999559989999999987654--0882637788899989
Q gi|254780268|r  385 LIVHGKNRKECMMRLNRALNE--IIIDGIKTTIPLFQKL  421 (443)
Q Consensus       385 iI~~g~~R~~Ai~~l~~aL~~--~~I~Gv~TN~~~l~~i  421 (443)
                      ||+...-|-.|++.|...-+-  .-+.=+.+.-+|...+
T Consensus       229 lIT~DtyRigA~eQLk~ya~il~vp~~vv~~~~~l~~~l  267 (282)
T TIGR03499       229 LITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELAKAL  267 (282)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHH
T ss_conf             998077767899999999999597489939999999999


No 182
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796    This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=73.52  E-value=3.9  Score=21.36  Aligned_cols=240  Identities=15%  Similarity=0.180  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHCCCCCCCCCCC----CCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             998877664224433243334----5579998732003301220002345782168887506689999987543212589
Q gi|254780268|r  116 KITAKKTAQQLGIPVVPGSGE----VYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFG  191 (443)
Q Consensus       116 K~~~k~~a~~~GVP~~p~~~~----~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fg  191 (443)
                      =+...+++..-.+|-...-.+    ...-|+-++.+++|--|.|=....     .-+-+.+.|...+++.++++-     
T Consensus       166 ylTs~~~l~~~~~Pdm~sL~vIGgg~~g~E~aQ~faRLG~~V~~~~RS~-----~ll~~~epeis~~V~~~l~~e-----  235 (494)
T TIGR02053       166 YLTSEEALELDRIPDMESLVVIGGGAIGVELAQAFARLGSEVTILQRSE-----RLLPREEPEISAAVEEALAEE-----  235 (494)
T ss_pred             EECCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEHHHHHH-----HHCCCCCHHHHHHHHHHHCCC-----
T ss_conf             3213777256879970468888652899999999985776140367998-----644646888999999984147-----


Q ss_pred             CCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-
Q ss_conf             9816884434201103315777347870236566542113562255403445588999999999999988651543410-
Q gi|254780268|r  192 NDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAG-  270 (443)
Q Consensus       192 d~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~-  270 (443)
                       +.|-+-+--...+.|+   .+|+.+..+++-.++      .|.-|| |             -+.-+.-.|.=+..|++ 
T Consensus       236 -eGi~~~~~~r~~~~v~---~rngg~~~~~~e~~~------~~~~~e-A-------------d~lLVATGR~PN~~gL~G  291 (494)
T TIGR02053       236 -EGIEVVTSARQVKAVS---VRNGGGKIVTVEKNG------GKAEVE-A-------------DELLVATGRRPNTDGLNG  291 (494)
T ss_pred             -CCEEEEECCEEEEEEE---ECCCCEEEEEEECCC------CCCEEE-H-------------HHHHHHHCCCCCCCCCCC
T ss_conf             -8779980440355444---527981899985589------874574-3-------------112555278756666774


Q ss_pred             --EEEEEECCCCEEEEECCCCCCCCCH----HHHHHHC-CC----CHHHHHHHH-------H---CCCCCC---------
Q ss_conf             --2458972883499822765433201----6788632-56----201123222-------1---022222---------
Q gi|254780268|r  271 --TIEFLYENGQFYFIEMNTRLQVEHP----VTEAITG-ID----LVHEQIYVA-------S---ENRLSV---------  320 (443)
Q Consensus       271 --tvEFl~~~~~~yflEvN~Rlqveh~----vte~~tg-vd----lv~~~~~~a-------~---g~~l~~---------  320 (443)
                        .+.--++  +-=++.||=|++=+.|    =--.+-| ++    |+..+.+-.       .   +.+|++         
T Consensus       292 Le~~GVk~~--~~G~I~Vde~lrTsnp~iYAAGDVt~~rl~Garfle~vAA~~G~vAA~NA~gg~~~~~d~~~~P~VvFT  369 (494)
T TIGR02053       292 LEKAGVKLD--ERGGILVDERLRTSNPGIYAAGDVTGGRLQGARFLEYVAAKEGVVAAENALGGANKKLDLTVIPRVVFT  369 (494)
T ss_pred             HHHCCCEEC--CCCCEEECCCCCCCCCCEEEEECEECCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEECCCCCCEEEEC
T ss_conf             234583466--885478726203587772462022378746523577787505804520101798815540218836976


Q ss_pred             ---------CCCCCCCCHHHHHHHCCCCC--CCC--CCCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEE
Q ss_conf             ---------11333320124533024566--221--11124421588668998446777602387707776843389999
Q gi|254780268|r  321 ---------QQKDITFSGHAIECRINAED--PEN--FIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIV  387 (443)
Q Consensus       321 ---------~~~~i~~~g~aie~Ri~aEd--p~~--f~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~  387 (443)
                               +..+....|...+||.-.-|  |+.  -.=..|.|+-...|...-|.+.-|-             +.=+-+
T Consensus       370 ~P~~AsVGLtE~ea~~~G~~~~~R~~~~~~VPra~~~r~t~G~iKlva~~~T~K~svkrGk-------------ilGv~~  436 (494)
T TIGR02053       370 DPAVASVGLTEAEAQKAGIEVDSRTLPLEAVPRARINRETRGFIKLVADPGTGKVSVKRGK-------------ILGVQV  436 (494)
T ss_pred             CCCEEECCCCHHHHHHCCCCEEEEEEEHHHHHHHHHCCCCCCEEEEEEECCCCEEEEECCC-------------EEEEEE
T ss_conf             8871213575898985597045666534036889857899614899973787358764142-------------778775


Q ss_pred             ECCCHHHHHHHHHHHHH
Q ss_conf             55998999999998765
Q gi|254780268|r  388 HGKNRKECMMRLNRALN  404 (443)
Q Consensus       388 ~g~~R~~Ai~~l~~aL~  404 (443)
                      .++.=.|.|.-+..|++
T Consensus       437 vA~~A~e~I~~A~~ai~  453 (494)
T TIGR02053       437 VAEEAAEVINEAALAIK  453 (494)
T ss_pred             ECCCHHHHHHHHHHHHH
T ss_conf             23117889999999998


No 183
>PRK08782 consensus
Probab=73.37  E-value=7.5  Score=19.30  Aligned_cols=120  Identities=21%  Similarity=0.302  Sum_probs=62.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEC-CCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf             8664470999999998888096599985-855771877675857999189985300069899999998709989945853
Q gi|254780268|r    5 ILIANRGEIALRILRACKELGIPTVAVH-STADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG   83 (443)
Q Consensus         5 iLianrGeia~riira~~elGi~tv~v~-s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG   83 (443)
                      |+.++.-+-|+++++++.+-|++.+=|- +.+                          +.-.+|+..++...| +.-|-|
T Consensus        22 Vir~~~~~~a~~~~eal~~gGi~~iEiTlrt~--------------------------~a~~~i~~l~~~~p~-~~vGaG   74 (219)
T PRK08782         22 VVTVDTLDQARRVADALLEGGLPAIELTLRTP--------------------------VAIEALAMLKRELPN-IVIGAG   74 (219)
T ss_pred             EEECCCHHHHHHHHHHHHHCCCCEEEEECCCC--------------------------HHHHHHHHHHHHCCC-CEEEEE
T ss_conf             99759999999999999987998799967993--------------------------399999999986899-479999


Q ss_pred             HHHCCHHHHHHHHHCCCEEE-CCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHH-HHCCCCC
Q ss_conf             13109766688984592162-689899987218998877664224433243334557999873200330122-0002345
Q gi|254780268|r   84 FLSENAKFAEILEDHHIKFI-GPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVL-VKASAGG  161 (443)
Q Consensus        84 fLsEn~~fa~~~e~~Gi~fI-GPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPvi-iKp~~gG  161 (443)
                      =. -+.+-++.+.++|..|+ -|..       |+.. -+.+.+.++|.+||.  .++.|...+ .+.|+.++ +=|+...
T Consensus        75 TV-~~~e~~~~a~~aGA~FiVSP~~-------~~~v-~~~a~~~~i~~iPGv--~TpSEi~~A-~~~G~~~vKlFPA~~~  142 (219)
T PRK08782         75 TV-LSERQLRQSVDAGADFLVTPGT-------PAPL-ARLLADAPIPAVPGA--ATPTELLTL-MGLGFRVCKLFPATAV  142 (219)
T ss_pred             EE-CCHHHHHHHHHCCCCEEECCCC-------CHHH-HHHHHHCCCCEECCC--CCHHHHHHH-HHCCCCEEEECCCHHC
T ss_conf             70-5899999999849989987899-------7999-999998199764785--999999999-9879998997773220


Q ss_pred             CC
Q ss_conf             78
Q gi|254780268|r  162 GG  163 (443)
Q Consensus       162 GG  163 (443)
                      ||
T Consensus       143 Gg  144 (219)
T PRK08782        143 GG  144 (219)
T ss_pred             CC
T ss_conf             84


No 184
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=73.04  E-value=6.5  Score=19.78  Aligned_cols=30  Identities=20%  Similarity=0.319  Sum_probs=26.7

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             068664470999999998888096599985
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAVH   32 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v~   32 (443)
                      +|+||.+-|+++.-+++.+++.|++.|.+.
T Consensus        13 ~~vlVIGaG~~~~~~~~~L~~~g~~~i~v~   42 (134)
T pfam01488        13 KKVLLIGAGEMARLAAKHLLSKGAKKITIA   42 (134)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             989999960999999999997599889995


No 185
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.95  E-value=7.7  Score=19.23  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=32.0

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHH
Q ss_conf             9706866447099999999888809659998585577
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADS   37 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi~tv~v~s~~D~   37 (443)
                      |||||.|.+-|-+...|.-.+-.-|+++++...+++.
T Consensus         1 mIkkV~ViGaG~MG~~IA~~~a~~G~~V~l~D~~~e~   37 (289)
T PRK09260          1 MMEKIVVVGAGVMGRGIAYVFASSGFQTTLVDISQEQ   37 (289)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf             9676999796887899999999689988999799899


No 186
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=72.04  E-value=7.9  Score=19.16  Aligned_cols=16  Identities=13%  Similarity=0.235  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHCCCCEE
Q ss_conf             8999999987099899
Q gi|254780268|r   63 IQQIVAACEVTGADAI   78 (443)
Q Consensus        63 i~~ii~~a~~~~~dai   78 (443)
                      +-.+++.||+.|+.-|
T Consensus        88 ~~~~~~~aK~~ga~ii  103 (179)
T TIGR03127        88 LVTVAKKAKEIGATVA  103 (179)
T ss_pred             HHHHHHHHHHCCCEEE
T ss_conf             9999999998799299


No 187
>PRK11269 glyoxylate carboligase; Provisional
Probab=71.67  E-value=6.1  Score=19.96  Aligned_cols=15  Identities=27%  Similarity=0.461  Sum_probs=9.0

Q ss_pred             HHHHHHHHCCCCHHH
Q ss_conf             999873200330122
Q gi|254780268|r  140 HTAMPIAKEIGFPVL  154 (443)
Q Consensus       140 ~ea~~~a~~iGyPvi  154 (443)
                      +++.++++++|.||+
T Consensus       221 ~~l~~lae~l~iPV~  235 (591)
T PRK11269        221 DLLVEFAELTGVPVI  235 (591)
T ss_pred             HHHHHHHHHCCCCEE
T ss_conf             999999985399789


No 188
>PRK05481 lipoyl synthase; Provisional
Probab=71.32  E-value=3.9  Score=21.34  Aligned_cols=53  Identities=23%  Similarity=0.360  Sum_probs=23.9

Q ss_pred             HHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf             998732003301220002345782168887506689999987543212589981688443420
Q gi|254780268|r  141 TAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLEN  203 (443)
Q Consensus       141 ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~  203 (443)
                      +++..+++++--++.|..-     =+.+=.+.+|+.+.++.....     |=+-+-|-+|+.-
T Consensus       184 ~vL~~~k~~~p~~~TKSgi-----MvGLGEt~eEv~~~~~DL~~~-----gvdilTiGQYL~P  236 (289)
T PRK05481        184 ELLKRAKELDPGIPTKSGL-----MVGLGETDEEVLEVMDDLRAH-----GVDILTIGQYLQP  236 (289)
T ss_pred             HHHHHHHHHCCCCCEEEEE-----EEECCCCHHHHHHHHHHHHHC-----CCCEEEECCCCCC
T ss_conf             9999999748998241356-----775578899999999999981-----9989983403588


No 189
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=71.16  E-value=8.4  Score=18.96  Aligned_cols=56  Identities=20%  Similarity=0.364  Sum_probs=41.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCEEEE--EECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf             89999999999999886515434102458--972883499822765433201678863
Q gi|254780268|r  246 SAQDRTEIGETCVKAMKKIDYRGAGTIEF--LYENGQFYFIEMNTRLQVEHPVTEAIT  301 (443)
Q Consensus       246 ~~~~~~~i~~~A~~~~~~~g~~g~~tvEF--l~~~~~~yflEvN~Rlqveh~vte~~t  301 (443)
                      +++...++.+...++++..|+.-.--=||  |++++++|+|.+--=+...||-.++.-
T Consensus       116 ~~~~~~~il~~~~~~~~~~glVHgDLSeyNilv~~~~~~iID~pQaV~~~hp~a~~~L  173 (187)
T cd05119         116 PEELYDQILELMRKLYREAGLVHGDLSEYNILVDDGKVYIIDVPQAVEIDHPNAEEFL  173 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCEEEEEECCCEECCCCCCHHHHH
T ss_conf             9999999999999999974931036555545898990899955721048998889999


No 190
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA    [Cell cycle control, cell division, chromosome partitioning]
Probab=71.04  E-value=8.5  Score=18.94  Aligned_cols=98  Identities=17%  Similarity=0.271  Sum_probs=65.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf             68664470999999998888096599985855771877675857999189985300069899999998709989945853
Q gi|254780268|r    4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG   83 (443)
Q Consensus         4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG   83 (443)
                      -|.|.+-|--.+...-++-+||.+|.++--+.|+....-  ..-  .||+....            -.-..+||+-    
T Consensus         6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~ms--CNP--aIGG~~KG------------~lvrEIDALG----   65 (621)
T COG0445           6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMS--CNP--AIGGPGKG------------HLVREIDALG----   65 (621)
T ss_pred             CEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCEEECC--CCC--CCCCCCCC------------EEEEEEHHCC----
T ss_conf             569989984204777766436980799973777446503--564--45773553------------2677524124----


Q ss_pred             HHHCCHHHHHHHHHCCCEE------ECCCHHHHHHHHCHHHHHHHHHHC
Q ss_conf             1310976668898459216------268989998721899887766422
Q gi|254780268|r   84 FLSENAKFAEILEDHHIKF------IGPSSEHIKIMGDKITAKKTAQQL  126 (443)
Q Consensus        84 fLsEn~~fa~~~e~~Gi~f------IGPs~~ai~~~gDK~~~k~~a~~~  126 (443)
                           ...++...++||.|      =||-.++.+.--||...++.|++.
T Consensus        66 -----G~Mg~~~D~~~IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~  109 (621)
T COG0445          66 -----GLMGKAADKAGIQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNE  109 (621)
T ss_pred             -----CHHHHHHHHCCCCHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHH
T ss_conf             -----55777666507865333677762104506544289999999999


No 191
>TIGR01702 CO_DH_cata carbon-monoxide dehydrogenase, catalytic subunit; InterPro: IPR010047   This entry describes the Ni-containing carbon monoxide dehydrogenase (CODH) family (1.2.99.2 from EC). These enzymes reversibly oxidise CO to CO(2), and play key roles in the energy-yielding pathways of various autotrophic anaerobes, allowing these organisms to grow with CO as the sole carbon source . The active sites of these enzymes contain Ni-iron-sulphur (NiFeS) clusters. This family also includes the CODH subunit of bifunctional CODH/acetyl-CoA synthetase (CODH/ACS), which contains two Ni-containing active sites to catalyse the formation of acetyl-CoA from CO(2)-derived CO , .   CODH is related to hybrid cluster proteins (HCP, or prismane) (IPR010048 from INTERPRO), a complex whose activity is not yet fully described; the hybrid Fe-S cluster in HCPs is similar to the NiFeS cluster in CODH .; GO: 0016151 nickel ion binding, 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0051539 4 iron 4 sulfur cluster binding, 0006091 generation of precursor metabolites and energy, 0005737 cytoplasm.
Probab=70.84  E-value=6.3  Score=19.87  Aligned_cols=17  Identities=12%  Similarity=0.096  Sum_probs=11.2

Q ss_pred             CCHHHHHHHHHHCCCCE
Q ss_conf             69899999998709989
Q gi|254780268|r   61 LNIQQIVAACEVTGADA   77 (443)
Q Consensus        61 ldi~~ii~~a~~~~~da   77 (443)
                      -|..+|=.+|+.-|+|.
T Consensus       113 kde~KLk~~a~~lGid~  129 (647)
T TIGR01702       113 KDEAKLKWLAKKLGIDT  129 (647)
T ss_pred             CCHHHHHHHHHHHCCCC
T ss_conf             38099999998818540


No 192
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=70.37  E-value=0.34  Score=28.83  Aligned_cols=131  Identities=18%  Similarity=0.108  Sum_probs=76.5

Q ss_pred             HHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             00698999999987099899458531310976668898459216268989998721899887766422443324333455
Q gi|254780268|r   59 SYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVY  138 (443)
Q Consensus        59 sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~  138 (443)
                      |.++..++++.-+..+.+..                       -+.+.. ....+.+|...+...++.+++.+-.....-
T Consensus        19 sl~sa~~v~~~l~~~~~~~~-----------------------~~~~~~-~~~~~~~~~~~~~~~~~~~vvfp~lhG~~g   74 (317)
T COG1181          19 SLLSAKAVLRALKGFGYDVT-----------------------PVDITE-AGLWMLDKEVTKRVLQKADVVFPVLHGPYG   74 (317)
T ss_pred             EEECHHHHHHHHHCCCCEEE-----------------------EEECCC-CCEEEECCCHHHHHHCCCCEEEEECCCCCC
T ss_conf             99658999998761487158-----------------------873246-632785031012220269877871558888


Q ss_pred             H-HHHHHHHHCCCCHHHHHCCCCCCCCEEEEEE----ECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEE
Q ss_conf             7-9998732003301220002345782168887----5066899999875432125899816884434201103315777
Q gi|254780268|r  139 P-HTAMPIAKEIGFPVLVKASAGGGGRGMRIAY----SENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFG  213 (443)
Q Consensus       139 ~-~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~----~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~  213 (443)
                      . .....+++.+|+|++.||..+..+.|..+..    +...++.+...+.++..    ...+++|++.++ ...-+-|..
T Consensus        75 EDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~----~~~~~~e~~~~~-l~~p~~Vkp  149 (317)
T COG1181          75 EDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDE----YSSVIVEEVEEG-LGFPLFVKP  149 (317)
T ss_pred             CCCHHHHHHHHHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCC----CHHHHHHHHHCC-CCCCEEEEC
T ss_conf             870699999970998760764453323509999889986786512356753345----204788877414-688789985


Q ss_pred             ECCCC
Q ss_conf             34787
Q gi|254780268|r  214 DGMGN  218 (443)
Q Consensus       214 D~~g~  218 (443)
                      +..|.
T Consensus       150 ~~~gS  154 (317)
T COG1181         150 AREGS  154 (317)
T ss_pred             CCCEE
T ss_conf             87311


No 193
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=70.25  E-value=8.8  Score=18.82  Aligned_cols=32  Identities=19%  Similarity=0.231  Sum_probs=18.6

Q ss_pred             EEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             688875066899999875432125899816884
Q gi|254780268|r  166 MRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       166 i~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      ...+.+++++...+++|.+.+.+ ..-++|+|+
T Consensus       129 ~~~v~~~~~i~~~l~~A~~~a~~-~rpGPV~l~  160 (554)
T TIGR03254       129 AYRVLRAEDIGIGIARAIRTAVS-GRPGGVYLD  160 (554)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHH-CCCCCEEEE
T ss_conf             88738999999999999999864-799866995


No 194
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase; InterPro: IPR010121   Pyruvate phosphate dikinase (PPDK, or pyruvate orthophosphate dikinase) is found in plants, bacteria and archaea. The amino acid sequence identity between bacterial and plant enzymes is high, and they are similar in sequence to other PEP-utilizing enzymes. PPDK catalyses the reversible conversion of ATP and pyruvate to AMP and PEP (phosphoenolpyruvate). In bacteria such as Clostridium symbiosum, PPDK uses Mg2+ and NH4+ ions as cofactors . The enzyme has three domains: the N- and C-terminal domains each have an active site centre that catalyses a different step in the reaction, and the middle domain has a carrier histidine residue that moves between the two active centres.   In plants, PPDK is localised predominantly in chloroplast stroma where it catalyses the rate-limiting step in the C4 photosynthetic pathway, namely the synthesis of PEP, which acts as the primary CO2 acceptor in C4 photosynthesis . PPDK activity in C4 plants is strictly regulated by light, its activity decreasing in darkness. This response is regulated by phosphorylation and dephosphorylation of the enzyme using ADP; such regulation is not seen in the bacterial form of the enzyme. PPDK is also found in C3 plants, but it is not known to have a photosynthetic role .; GO: 0050242 pyruvate phosphate dikinase activity.
Probab=70.15  E-value=8.2  Score=19.06  Aligned_cols=204  Identities=20%  Similarity=0.388  Sum_probs=99.4

Q ss_pred             HHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHH-----HHHHHCCCEEECCCHHHHHHHHCHH
Q ss_conf             75857999189985300069899999998709989945853131097666-----8898459216268989998721899
Q gi|254780268|r   43 RLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAKFA-----EILEDHHIKFIGPSSEHIKIMGDKI  117 (443)
Q Consensus        43 ~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa-----~~~e~~Gi~fIGPs~~ai~~~gDK~  117 (443)
                      .|.|-..+||        ||=+.+-..|+.+|             |.-||     +-++=.|=+.+|=+.+.-+..-|+.
T Consensus       107 GMMDTvLNLG--------LND~~V~GLA~~tg-------------n~RFAyDSYRRFiqMFG~vVl~ip~~~Fe~~le~~  165 (920)
T TIGR01828       107 GMMDTVLNLG--------LNDETVKGLAKLTG-------------NARFAYDSYRRFIQMFGDVVLGIPHELFEQALENL  165 (920)
T ss_pred             CCCHHHHCCC--------CCHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             8526650245--------52689999861468-------------84225687788988420142179836889999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCC-CCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             887766422443324333455799987320033012200023-4578216888750668999998754321258998168
Q gi|254780268|r  118 TAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASA-GGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVY  196 (443)
Q Consensus       118 ~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~-gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vl  196 (443)
                      +     .+.|+..=   +..+.+++.+.++.  |=-+.+-.. |-    .....-.+||..|+..++.    |+.+.+=.
T Consensus       166 K-----~e~g~~~D---T~Lta~Dl~~li~~--yk~~~~~~~nG~----~FPqDP~eQL~~Ai~AVF~----SW~n~RA~  227 (920)
T TIGR01828       166 K-----KEKGVKLD---TDLTADDLKELIEK--YKKIYREATNGK----DFPQDPKEQLELAIKAVFD----SWNNPRAV  227 (920)
T ss_pred             H-----HHCCCCCC---CCCCHHHHHHHHHH--HHHHHHHHHCCC----CCCCCHHHHHHHHHHHHHC----CCCCCHHH
T ss_conf             8-----76288558---51367889999999--999999986689----8773318999999999831----56873078


Q ss_pred             EEE-EEEEEEE-----CCEE--EEEE---CCCCCCCCCCCCCCCCCCCCE-EEE---------------ECCCCC--CCH
Q ss_conf             844-3420110-----3315--7773---478702365665421135622-554---------------034455--889
Q gi|254780268|r  197 IEK-YLENPRH-----IEVQ--IFGD---GMGNAIHFGERDCSVQRRNQK-IWE---------------EAHSPV--ISA  247 (443)
Q Consensus       197 vEk-~i~~~rh-----iEvq--Vl~D---~~g~~v~l~erdCSiQrr~qk-iiE---------------eaPap~--l~~  247 (443)
                      +=+ -+..-=|     |-||  |+|+   --|+.|.| +|+=|-=  -++ +-=               -.|-|.  +..
T Consensus       228 ~YRr~~n~Ip~~~GTAVNiQ~MVFGN~G~dSgTGV~F-TRnP~TG--Ek~ylfGEfL~NAQGEDVVAGIRTP~~i~~~~~  304 (920)
T TIGR01828       228 VYRRRLNDIPEDLGTAVNIQSMVFGNMGEDSGTGVAF-TRNPSTG--EKKYLFGEFLINAQGEDVVAGIRTPEPISELKE  304 (920)
T ss_pred             HHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCEEEE-ECCCCCC--CCCEEHHHHHHCCCCCEEECCCCCCHHHHHHHH
T ss_conf             8867632584103871578752206788887441467-5287887--664034314202477525324338800665457


Q ss_pred             --------------HHHHHHHHHHHHHHHHH--CCCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf             --------------99999999999988651--54341024589728834998227654
Q gi|254780268|r  248 --------------QDRTEIGETCVKAMKKI--DYRGAGTIEFLYENGQFYFIEMNTRL  290 (443)
Q Consensus       248 --------------~~~~~i~~~A~~~~~~~--g~~g~~tvEFl~~~~~~yflEvN~Rl  290 (443)
                                    ..--+.++.-.++++.|  .|+=.-=+||=++.||+|+|=  ||-
T Consensus       305 dareE~Gd~~~s~~~~mP~~Y~eL~~~~~~LE~HYrDMqDIEFTIE~gKLYmLQ--TR~  361 (920)
T TIGR01828       305 DAREEMGDDENSMEADMPEVYKELLDIAEKLEGHYRDMQDIEFTIERGKLYMLQ--TRN  361 (920)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEE--CCC
T ss_conf             767632788068987428999999999999874433307641476527501333--555


No 195
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=69.81  E-value=6.2  Score=19.89  Aligned_cols=39  Identities=31%  Similarity=0.284  Sum_probs=34.8

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCC
Q ss_conf             706866447099999999888809659998585577187
Q gi|254780268|r    2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAM   40 (443)
Q Consensus         2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~   40 (443)
                      +-||+.++--+.|+.+.+++-+.|++.++|+|.||+-.-
T Consensus         1 ~mkivF~GTp~fa~~~L~~L~~~~~eivaV~Tqpdkp~g   39 (307)
T COG0223           1 MMRIVFFGTPEFAVPSLEALIEAGHEIVAVVTQPDKPAG   39 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf             917999767445499999998289804899948997667


No 196
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973    The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=69.81  E-value=9  Score=18.76  Aligned_cols=38  Identities=32%  Similarity=0.336  Sum_probs=15.4

Q ss_pred             HHHHHHHCCCCCCCCC--CCCC-HHHHHHHHHCCCCHHHHH
Q ss_conf             8776642244332433--3455-799987320033012200
Q gi|254780268|r  119 AKKTAQQLGIPVVPGS--GEVY-PHTAMPIAKEIGFPVLVK  156 (443)
Q Consensus       119 ~k~~a~~~GVP~~p~~--~~~~-~~ea~~~a~~iGyPviiK  156 (443)
                      +|++=++-|+|=..++  +..+ .+-++.+|+-+|=+=++|
T Consensus       271 A~~m~~~YGIPyf~~SFyGi~Dt~~aLr~~A~~fgd~~l~~  311 (470)
T TIGR01283       271 ARKMEEKYGIPYFEVSFYGIEDTSKALRDIAELFGDEELLK  311 (470)
T ss_pred             HHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             99999646897587214108889999999997639887999


No 197
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627   L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=69.80  E-value=6  Score=20.00  Aligned_cols=29  Identities=28%  Similarity=0.429  Sum_probs=14.2

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             06866447099999999888809659998
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAV   31 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v   31 (443)
                      +.+||.+-|+|.+=.+-.||.-|-+.|.+
T Consensus       163 ~~vlv~GaGPiGlma~AVAKa~GA~~Vi~  191 (341)
T TIGR00692       163 EDVLVIGAGPIGLMAVAVAKAAGARNVIV  191 (341)
T ss_pred             CCEEEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             71899857747899999987727840599


No 198
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=69.56  E-value=9.1  Score=18.73  Aligned_cols=107  Identities=27%  Similarity=0.459  Sum_probs=56.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEC-CCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf             8664470999999998888096599985-855771877675857999189985300069899999998709989945853
Q gi|254780268|r    5 ILIANRGEIALRILRACKELGIPTVAVH-STADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG   83 (443)
Q Consensus         5 iLianrGeia~riira~~elGi~tv~v~-s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG   83 (443)
                      |+-++.-+-|.++++++.+-|++.+=|- +.++                      +   .+. |+..+++-.+.+ -|-|
T Consensus        20 Vlr~~~~~~a~~~~~al~~gGi~~iEITlrt~~----------------------a---~~~-I~~l~~~~p~~~-vGaG   72 (212)
T PRK06015         20 VLLIDDVEHAVPLARALARGGLPAIEITLRTPA----------------------A---LDA-IRAVAAEVEEAI-VGAG   72 (212)
T ss_pred             EEECCCHHHHHHHHHHHHHCCCCEEEEECCCCC----------------------H---HHH-HHHHHHHCCCCE-EEEE
T ss_conf             997799999999999999879988999689951----------------------9---999-999998699967-9542


Q ss_pred             HHHCCHHHHHHHHHCCCEEEC-C--CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf             131097666889845921626-8--98999872189988776642244332433345579998732003301
Q gi|254780268|r   84 FLSENAKFAEILEDHHIKFIG-P--SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFP  152 (443)
Q Consensus        84 fLsEn~~fa~~~e~~Gi~fIG-P--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyP  152 (443)
                      =. -+.+-++.+.++|..|+= |  +++.+          +.+++.|+|.+||.  .++.|...+. +.|+.
T Consensus        73 TV-l~~e~~~~a~~aGA~FiVSP~~~~~v~----------~~a~~~~i~~iPGv--~TpsEi~~A~-~~G~~  130 (212)
T PRK06015         73 TI-LNAKQFEDAAKAGSRFIVSPGTTQELL----------AAANDSDVPLLPGA--ITPSEVMALR-EEGYT  130 (212)
T ss_pred             EC-CCHHHHHHHHHCCCCEEECCCCCHHHH----------HHHHHCCCCEECCC--CCHHHHHHHH-HCCCC
T ss_conf             11-569999999984998998589999999----------99998399773786--9999999999-87999


No 199
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=69.52  E-value=9.1  Score=18.72  Aligned_cols=217  Identities=17%  Similarity=0.244  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC----CCCEEECCCC-
Q ss_conf             99999999888809659998---585577187767585799918998530006989999999870----9989945853-
Q gi|254780268|r   12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT----GADAIHPGYG-   83 (443)
Q Consensus        12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~----~~daihPGyG-   83 (443)
                      |--.++++++-+-|...+=+   ||||=..-+-.+.|.+-- |..+      .+.+.+++..++.    +.--|.=+|- 
T Consensus        23 e~~~~~~~~l~~~Gad~iEiGiPfSDP~aDGpvIq~a~~~A-L~~G------~~~~~~f~~~~~~r~~~~~pivlM~Y~N   95 (256)
T PRK13111         23 ETSLEILKALVEAGADIIELGIPFSDPVADGPVIQRASLRA-LAAG------VTLADVLELLREIRAKPTIPIVLMTYYN   95 (256)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HHCC------CCHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf             99999999999659999997888788766579999999999-9779------9699999999998606899889985030


Q ss_pred             -HHHCC-HHHHHHHHHCCCE-EECCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHHH-CCCCHHHHH
Q ss_conf             -13109-7666889845921-62689--8999872189988776642244332433345579998-7320-033012200
Q gi|254780268|r   84 -FLSEN-AKFAEILEDHHIK-FIGPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAM-PIAK-EIGFPVLVK  156 (443)
Q Consensus        84 -fLsEn-~~fa~~~e~~Gi~-fIGPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~-~~a~-~iGyPviiK  156 (443)
                       ++.-. ..|.+.|.++|+. +|=|.  .+      .-...++.++++|+..++.....++++.+ ..++ .-||=..+=
T Consensus        96 ~i~~~G~e~F~~~~~~~GvdGvIipDLP~e------E~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~s~gfiY~vs  169 (256)
T PRK13111         96 PIFQYGVEAFAADAAEAGVDGLIIPDLPPE------EAEEFRAAAKKHGIDLIFLVAPTTTDERLKKIASHASGFVYYVS  169 (256)
T ss_pred             HHHHHCHHHHHHHHHHCCCCEEEECCCCHH------HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf             898709999999999759977981699978------88999999997598089996999988999999962698599985


Q ss_pred             CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             02345782168887506689999987543212589981688443420110331577734787023656654211356225
Q gi|254780268|r  157 ASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKI  236 (443)
Q Consensus       157 p~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qki  236 (443)
                       ..|  --|.+ -...+++.+.+++.++.+     +-++.+-==|..+.|+.-  +..+ -..+.+|..   +    -|.
T Consensus       170 -~~G--vTG~~-~~~~~~~~~~i~~ik~~t-----~~Pi~vGFGIs~~e~v~~--~~~~-aDGvIVGSa---i----v~~  230 (256)
T PRK13111        170 -RAG--VTGAR-SADAADVADLLARLKAHT-----DLPVAVGFGISTPEQAAA--IAEG-ADGVIVGSA---L----VKI  230 (256)
T ss_pred             -CCC--CCCCC-CCCHHHHHHHHHHHHHCC-----CCCEEEECCCCCHHHHHH--HHCC-CCEEEECHH---H----HHH
T ss_conf             -677--67887-666288999999998706-----897588528899999999--9745-999998689---9----999


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             5403445588999999999999988651
Q gi|254780268|r  237 WEEAHSPVISAQDRTEIGETCVKAMKKI  264 (443)
Q Consensus       237 iEeaPap~l~~~~~~~i~~~A~~~~~~~  264 (443)
                      ||..    -+++..+.+.+++..+-.++
T Consensus       231 i~~~----~~~~~~~~v~~f~~~lk~~~  254 (256)
T PRK13111        231 IEAA----DPEEALAALAEFVKELKAAL  254 (256)
T ss_pred             HHHC----CHHHHHHHHHHHHHHHHHHH
T ss_conf             9843----97778999999999999986


No 200
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=69.35  E-value=6.5  Score=19.74  Aligned_cols=117  Identities=13%  Similarity=0.208  Sum_probs=59.8

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEE-EE---CCCCCCCCHHCCHHHHHHHHHHCCCCE-
Q ss_conf             0686644709999999988880965999858557718776758579-99---189985300069899999998709989-
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADES-VC---IGPPSSKDSYLNIQQIVAACEVTGADA-   77 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~-~~---i~~~~~~~sYldi~~ii~~a~~~~~da-   77 (443)
                      .||||.+-|-+...+.+.+-.+|+..+.+ -|.|.....- +..+. |.   +|. +      -.+.+-+..++.+.+. 
T Consensus         2 skVlivG~GglG~~~~~~La~~Gvg~i~l-vD~D~ve~sN-L~Rq~l~~~~diG~-~------Ka~~~~~~l~~~np~~~   72 (134)
T pfam00899         2 SRVLVVGAGGLGSPAAEYLARAGVGKLTL-VDFDTVELSN-LNRQILFTESDIGK-P------KAEVAKERLRAINPDVE   72 (134)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEE-EECCCCCCCC-CCCEEECCHHHCCC-E------EHHHHHHHHHHHCCCCE
T ss_conf             88999898889999999999938974999-9895676322-27224233646688-1------07999999997789958


Q ss_pred             EECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCC
Q ss_conf             945853131097666889845921626898999872189988776642244332433
Q gi|254780268|r   78 IHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGS  134 (443)
Q Consensus        78 ihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~  134 (443)
                      |.+=-.++++ ..+.+.+.+..+.+...     +....|...-+.+.+.++|.+-+.
T Consensus        73 i~~~~~~i~~-~~~~~~~~~~DvVi~~~-----Dn~~~r~~ln~~c~~~~ip~i~~~  123 (134)
T pfam00899        73 VEAYPERLTP-ENLEELLKGADLVVDAL-----DNFAARYLLNDACVKRGIPLISAG  123 (134)
T ss_pred             EEEEECCCCH-HHHHHCCCCCCEEEECC-----CCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             9999256797-78764264488999998-----999999999999998599899955


No 201
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=69.33  E-value=9.2  Score=18.69  Aligned_cols=10  Identities=30%  Similarity=0.557  Sum_probs=3.6

Q ss_pred             HHHHHHCCCE
Q ss_conf             9988880965
Q gi|254780268|r   18 LRACKELGIP   27 (443)
Q Consensus        18 ira~~elGi~   27 (443)
                      +|-||.||++
T Consensus        52 ~Rf~kkLGf~   61 (284)
T PRK11302         52 NRFCRSLDTK   61 (284)
T ss_pred             HHHHHHHCCC
T ss_conf             9999995789


No 202
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=69.09  E-value=9.3  Score=18.66  Aligned_cols=12  Identities=17%  Similarity=0.393  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             668999998754
Q gi|254780268|r  173 NDLSEAIDQARS  184 (443)
Q Consensus       173 ~el~~a~~~a~~  184 (443)
                      .++.+..+.|++
T Consensus        89 ~~~~~~~~~aK~  100 (179)
T cd05005          89 SSVVNAAEKAKK  100 (179)
T ss_pred             HHHHHHHHHHHH
T ss_conf             689999999998


No 203
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=68.75  E-value=6.3  Score=19.84  Aligned_cols=13  Identities=31%  Similarity=0.324  Sum_probs=10.2

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             9899999999876
Q gi|254780268|r  391 NRKECMMRLNRAL  403 (443)
Q Consensus       391 ~R~~Ai~~l~~aL  403 (443)
                      +-.+|++||.+||
T Consensus       390 ~l~ea~~Rl~~~L  402 (402)
T TIGR03542       390 NIVAACERIKHAL  402 (402)
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999999759


No 204
>pfam03599 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit.
Probab=68.63  E-value=9.5  Score=18.59  Aligned_cols=61  Identities=20%  Similarity=0.215  Sum_probs=31.9

Q ss_pred             HHHHHHHHH----CCCEE--ECCCHHHHHHHHCHHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCC
Q ss_conf             766688984----59216--268989998721899887766422--44332433345579998732003301220002
Q gi|254780268|r   89 AKFAEILED----HHIKF--IGPSSEHIKIMGDKITAKKTAQQL--GIPVVPGSGEVYPHTAMPIAKEIGFPVLVKAS  158 (443)
Q Consensus        89 ~~fa~~~e~----~Gi~f--IGPs~~ai~~~gDK~~~k~~a~~~--GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~  158 (443)
                      ..|++.+++    .++++  ++-.|++++.         .++.+  .=|.+-+....+-++..+.|.+.+-|+.+++.
T Consensus        82 ~~fa~~vk~V~~~~~~pliL~~~dp~vl~a---------ale~~~~~rPLlyaAt~~N~~~m~~lA~~~~~Pv~v~a~  150 (384)
T pfam03599        82 KEFAKAVEKVLQAVDVPLVIGGSDPEVLKA---------ALEVAEDERPLLYAATLDNYKEIAELALEYKHPVLLWSI  150 (384)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHH---------HHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             999999999996469988998089999999---------999746589778548998999999999974982899748


No 205
>PRK06895 para-aminobenzoate synthase component II; Provisional
Probab=68.61  E-value=9.5  Score=18.59  Aligned_cols=32  Identities=25%  Similarity=0.541  Sum_probs=25.2

Q ss_pred             CCEEEEEECCCHH-HHHHHHHHHHCCCEEEEEC
Q ss_conf             9706866447099-9999998888096599985
Q gi|254780268|r    1 MISKILIANRGEI-ALRILRACKELGIPTVAVH   32 (443)
Q Consensus         1 m~~~iLianrGei-a~riira~~elGi~tv~v~   32 (443)
                      |.+||||...|-- .--|.|.+|++|+++.++.
T Consensus         1 M~~kILiiD~~dsfT~ni~~~lr~lg~~~~v~~   33 (191)
T PRK06895          1 MATNLLIINNHDSFTFNLVDLIRKLGVPMKVVN   33 (191)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf             998699996988489999999987799699984


No 206
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004    One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate .  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=68.51  E-value=7  Score=19.52  Aligned_cols=184  Identities=18%  Similarity=0.247  Sum_probs=95.9

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf             06866447099999999888809659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY   82 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy   82 (443)
                      +||-|++.|+-.+-+..-+-++|++. .||     .|+|.-=-==+|-||.     .-|+-+-|..=.++.+-=+|-==|
T Consensus       143 ~kVAViGaGPAGL~cA~elAk~Gh~V-tvf-----EALhKPGGV~~YGIPe-----fRLpKei~~~E~k~LkklGv~fr~  211 (462)
T TIGR01316       143 KKVAVIGAGPAGLACASELAKKGHEV-TVF-----EALHKPGGVLAYGIPE-----FRLPKEIVETEVKKLKKLGVKFRT  211 (462)
T ss_pred             CEEEEECCCCHHHHHHHHHHHCCCEE-EEE-----EECCCCCCEEEECCCC-----CCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf             77999846821468899997479869-999-----7148998567536888-----548757889888876326637994


Q ss_pred             CHHH-CCHHHHHHHHHC--CCEEECCC---HHHHHHHHC---------HHHHHHHH------HHCCCCCCCCCCC-----
Q ss_conf             3131-097666889845--92162689---899987218---------99887766------4224433243334-----
Q gi|254780268|r   83 GFLS-ENAKFAEILEDH--HIKFIGPS---SEHIKIMGD---------KITAKKTA------QQLGIPVVPGSGE-----  136 (443)
Q Consensus        83 GfLs-En~~fa~~~e~~--Gi~fIGPs---~~ai~~~gD---------K~~~k~~a------~~~GVP~~p~~~~-----  136 (443)
                      +||= -|.+|.+.++++  .-.|||..   |+-+.+-|+         --.+|--+      -+.++|+.-+-.+     
T Consensus       212 ~~lvGkt~TL~eL~~~YGfDAVFIgtGAG~pkl~NipG~~L~gvysA~dfLtR~nLmKAyefp~~dtPv~~gK~vvviGg  291 (462)
T TIGR01316       212 DYLVGKTVTLEELLEKYGFDAVFIGTGAGLPKLLNIPGEELKGVYSANDFLTRVNLMKAYEFPKKDTPVEVGKKVVVIGG  291 (462)
T ss_pred             CCEECCCHHHHHHHHHCCCCEEEEEECCCCCEECCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEECC
T ss_conf             43750511288888751970799950689870016784343400223468877777654236678875654476899878


Q ss_pred             -CCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEE--ECHHHHHH---HHHHHHHHHCCCCCCCEEEEEEEEEEEECCEE
Q ss_conf             -5579998732003301220002345782168887--50668999---99875432125899816884434201103315
Q gi|254780268|r  137 -VYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAY--SENDLSEA---IDQARSEALAAFGNDAVYIEKYLENPRHIEVQ  210 (443)
Q Consensus       137 -~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~--~~~el~~a---~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvq  210 (443)
                       .+.-|+..-|.++|-=            -+.+++  +.+|..+-   |.++.        +..|-++=+++     -|.
T Consensus       292 GntAvD~artAlRLGaE------------qvh~~YRrtRedmtAr~EEi~ha~--------eEGVkfhfl~Q-----pve  346 (462)
T TIGR01316       292 GNTAVDAARTALRLGAE------------QVHVVYRRTREDMTAREEEIKHAE--------EEGVKFHFLLQ-----PVE  346 (462)
T ss_pred             CHHHHHHHHHHHHCCCC------------EEEEEEECCCCCCHHHHHHHHHHH--------HCCCEEEEEEC-----CEE
T ss_conf             53678777666452842------------369988547775136699999885--------38928998742-----168


Q ss_pred             EEEECCCCCCCC
Q ss_conf             777347870236
Q gi|254780268|r  211 IFGDGMGNAIHF  222 (443)
Q Consensus       211 Vl~D~~g~~v~l  222 (443)
                      ++||-.|++..+
T Consensus       347 ~iGdE~G~V~av  358 (462)
T TIGR01316       347 VIGDEEGEVKAV  358 (462)
T ss_pred             EEECCCCEEEEE
T ss_conf             986576518999


No 207
>PRK06801 hypothetical protein; Provisional
Probab=68.51  E-value=9.5  Score=18.58  Aligned_cols=75  Identities=23%  Similarity=0.223  Sum_probs=38.3

Q ss_pred             CCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCH---HHHHHHHHHCCCCCCCCCCCC
Q ss_conf             69899999998709989945853131097666889845921626898999872189---988776642244332433345
Q gi|254780268|r   61 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDK---ITAKKTAQQLGIPVVPGSGEV  137 (443)
Q Consensus        61 ldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK---~~~k~~a~~~GVP~~p~~~~~  137 (443)
                      -.+.+++++|.+.+...|.                        +-++..++.++-+   ...+.+++++.||++-...-.
T Consensus        29 e~~~avi~AAee~~sPvIl------------------------q~s~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDHg   84 (286)
T PRK06801         29 HFLRALFAAAKQERSPFII------------------------NIAEVHFKYISLESLVEAVKFEAAHHDIPVVLNLDHG   84 (286)
T ss_pred             HHHHHHHHHHHHHCCCEEE------------------------ECCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             9999999999997879899------------------------8067577566999999999999987799899989999


Q ss_pred             CHHHHHHHHHCCCCH-HHHHCCC
Q ss_conf             579998732003301-2200023
Q gi|254780268|r  138 YPHTAMPIAKEIGFP-VLVKASA  159 (443)
Q Consensus       138 ~~~ea~~~a~~iGyP-viiKp~~  159 (443)
                      ..-+....+-+.||- ||+-.|.
T Consensus        85 ~~~e~i~~ai~~Gf~SVM~DgS~  107 (286)
T PRK06801         85 LHFEAVVRALRLGFSSVMFDGST  107 (286)
T ss_pred             CCHHHHHHHHHCCCCEEEEECCC
T ss_conf             99999999998299879974998


No 208
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268   These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=68.33  E-value=6.4  Score=19.81  Aligned_cols=52  Identities=19%  Similarity=0.223  Sum_probs=36.4

Q ss_pred             HHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf             9998732003301220002345782168887506689999987543212589981688443420
Q gi|254780268|r  140 HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLEN  203 (443)
Q Consensus       140 ~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~  203 (443)
                      -+++..+-+.+=||+||--.         -.+-+|+..|-|....++. +  .+-||+|+=|-.
T Consensus       122 F~LL~~vG~~~KPVLLKRG~---------~aTi~EwL~AAEYIl~~Gs-N--~~ViLCERGIRT  173 (262)
T TIGR01361       122 FELLKEVGKQGKPVLLKRGM---------GATIEEWLEAAEYILSEGS-N--GNVILCERGIRT  173 (262)
T ss_pred             HHHHHHHHHCCCCEEEECCC---------CHHHHHHHHHHHHHHHCCC-C--CCEEEEECCCCC
T ss_conf             69999972237975530772---------1589999999999984688-9--954899758567


No 209
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=68.12  E-value=9.7  Score=18.52  Aligned_cols=107  Identities=24%  Similarity=0.275  Sum_probs=60.7

Q ss_pred             EEECCCHHHHHHHHHHHHCCCEEEEE-CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCH
Q ss_conf             66447099999999888809659998-58557718776758579991899853000698999999987099899458531
Q gi|254780268|r    6 LIANRGEIALRILRACKELGIPTVAV-HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGF   84 (443)
Q Consensus         6 LianrGeia~riira~~elGi~tv~v-~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGf   84 (443)
                      |-+..-+-|+++++++.+-|++++=| ++.|+                          .-.+|+..++.-.+.++-|-|=
T Consensus        16 lR~~~~~~a~~~~~al~~~Gi~~iEVTl~tp~--------------------------a~~~I~~l~~~~~~~~~iGAGT   69 (206)
T PRK09140         16 LRGITPDEALAHVGALIEAGFRAIEIPLNSPD--------------------------PFDSIAALVKALGDDALIGAGT   69 (206)
T ss_pred             EECCCHHHHHHHHHHHHHCCCCEEEEECCCCC--------------------------HHHHHHHHHHHCCCCEEEEEEE
T ss_conf             95899999999999999869988999179976--------------------------9999999999679865998620


Q ss_pred             HHCCHHHHHHHHHCCCEEE-CC--CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf             3109766688984592162-68--98999872189988776642244332433345579998732003301
Q gi|254780268|r   85 LSENAKFAEILEDHHIKFI-GP--SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFP  152 (443)
Q Consensus        85 LsEn~~fa~~~e~~Gi~fI-GP--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyP  152 (443)
                      . -+.+-++...++|..|+ -|  +++.+          +.+++.|+|.+||.  .++.|...+. +.|+.
T Consensus        70 V-lt~e~~~~ai~aGA~FiVSP~~~~~vi----------~~a~~~~i~~iPG~--~TPsEi~~A~-~~Ga~  126 (206)
T PRK09140         70 V-LSPEQVDRLADAGGRLIVTPNIDPEVI----------RRAVAYGMTVMPGV--ATPTEAFAAL-RAGAD  126 (206)
T ss_pred             C-CCHHHHHHHHHCCCCEEECCCCCHHHH----------HHHHHCCCCCCCCC--CCHHHHHHHH-HCCCC
T ss_conf             4-679999999985999999999989999----------99998299652785--9999999999-85987


No 210
>PRK12928 lipoyl synthase; Provisional
Probab=67.93  E-value=5.7  Score=20.16  Aligned_cols=13  Identities=15%  Similarity=0.353  Sum_probs=5.7

Q ss_pred             EECHHHHHHHHHH
Q ss_conf             7506689999987
Q gi|254780268|r  170 YSENDLSEAIDQA  182 (443)
Q Consensus       170 ~~~~el~~a~~~a  182 (443)
                      .+.+|+.+.++..
T Consensus       216 Et~eEv~~~~~DL  228 (290)
T PRK12928        216 ETEDEVIETLRDL  228 (290)
T ss_pred             CCHHHHHHHHHHH
T ss_conf             8899999999999


No 211
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=67.89  E-value=9.8  Score=18.49  Aligned_cols=16  Identities=31%  Similarity=0.792  Sum_probs=9.9

Q ss_pred             EEEEEECHHHHHHHHH
Q ss_conf             6888750668999998
Q gi|254780268|r  166 MRIAYSENDLSEAIDQ  181 (443)
Q Consensus       166 i~vv~~~~el~~a~~~  181 (443)
                      +.+|++++||.++++.
T Consensus       270 ~~v~~~~~~l~~al~~  285 (412)
T PRK05703        270 VKVAYDPKELAKALEQ  285 (412)
T ss_pred             EEEECCHHHHHHHHHH
T ss_conf             7984799999999987


No 212
>TIGR02015 BchY chlorophyllide reductase subunit Y; InterPro: IPR010245   This entry represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase , . This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.; GO: 0016731 oxidoreductase activity acting on iron-sulfur proteins as donors NAD or NADP as acceptor, 0015979 photosynthesis, 0030494 bacteriochlorophyll biosynthetic process, 0016021 integral to membrane.
Probab=67.41  E-value=10  Score=18.43  Aligned_cols=65  Identities=18%  Similarity=0.267  Sum_probs=29.7

Q ss_pred             CCCHHHHHHHCCCCCC----CCCCCC--CCCEEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf             3201245330245662----211112--4421588668998446777602387707776843389999559989999999
Q gi|254780268|r  326 TFSGHAIECRINAEDP----ENFIPN--PGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRL  399 (443)
Q Consensus       326 ~~~g~aie~Ri~aEdp----~~f~Ps--~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l  399 (443)
                      ..+|..+..|-+-||-    ..|.|.  .|+-.-           +.....-...+-||-++|.--=..++.=...+..+
T Consensus       336 ~~~G~~VkyR~~LE~D~~Av~~f~PDL~IGTT~l-----------~~~AK~~GiPalYfTN~ISARPl~~~aGA~Sl~~~  404 (426)
T TIGR02015       336 EALGVEVKYRASLEDDMEAVEEFEPDLAIGTTPL-----------VQFAKEKGIPALYFTNLISARPLMGPAGAGSLLQV  404 (426)
T ss_pred             HHCCCEEEECCCHHHHHHHHHCCCCCEEEECCCH-----------HHHHHHCCCCEEEHHHCHHHCCCCCCCHHHHHHHH
T ss_conf             8479558860223678999961699757616735-----------67877548961211101120322100017899999


Q ss_pred             HH
Q ss_conf             98
Q gi|254780268|r  400 NR  401 (443)
Q Consensus       400 ~~  401 (443)
                      ..
T Consensus       405 i~  406 (426)
T TIGR02015       405 IN  406 (426)
T ss_pred             HH
T ss_conf             99


No 213
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=67.18  E-value=10  Score=18.40  Aligned_cols=126  Identities=18%  Similarity=0.245  Sum_probs=71.9

Q ss_pred             HHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC-CCCEEECCCCHHHCC----H
Q ss_conf             99999888809659998585577187767585799918998530006989999999870-998994585313109----7
Q gi|254780268|r   15 LRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT-GADAIHPGYGFLSEN----A   89 (443)
Q Consensus        15 ~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~-~~daihPGyGfLsEn----~   89 (443)
                      .|+++++.++|++.|=+                   =|+.+..  .-|+..||+-.++. +.+-|-     |.-|    +
T Consensus        51 ~~l~~~~~~~Gi~kvRl-------------------TGGEPLl--R~dl~~li~~l~~~~gi~~is-----lTTNG~lL~  104 (329)
T PRK13361         51 AWLAQAFTELGVRKIRL-------------------TGGEPLV--RTGCDQLVARLGKLPGLEELS-----MTTNGSRLA  104 (329)
T ss_pred             HHHHHHHHHCCCEEEEE-------------------ECCCCCC--CCCHHHHHHHHHHCCCCCEEE-----EECCHHHHH
T ss_conf             99999999729528996-------------------2788223--568899999986179977189-----966477689


Q ss_pred             HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC-HHHHHCCCCCCCCEEEE
Q ss_conf             66688984592162689899987218998877664224433243334557999873200330-12200023457821688
Q gi|254780268|r   90 KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF-PVLVKASAGGGGRGMRI  168 (443)
Q Consensus        90 ~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGy-PviiKp~~gGGG~Gi~v  168 (443)
                      .+|..+.++|+.-|--|-+++    |..+++++...-.++        ..-+..+.|.+.|| ||=|-.+--       .
T Consensus       105 ~~a~~Lk~aGL~rvNISLDsL----d~~~f~~ITr~~~l~--------~Vl~gI~aA~~~G~~~VKiN~V~l-------r  165 (329)
T PRK13361        105 RFAAELADAGLKRLNISLDTL----NPDLFAALTRNGRLE--------RVIAGIDAAKAAGFERIKLNAVIL-------R  165 (329)
T ss_pred             HHHHHHHHCCCCEEEEECCCC----CHHHHHHHHCCCCHH--------HHHHHHHHHHHCCCCEEEEEEEEE-------C
T ss_conf             999999977998699735779----999999772899769--------999999999977997388999983-------6


Q ss_pred             EEECHHHHHHHHHHHHH
Q ss_conf             87506689999987543
Q gi|254780268|r  169 AYSENDLSEAIDQARSE  185 (443)
Q Consensus       169 v~~~~el~~a~~~a~~e  185 (443)
                      =.|.+|+.+.++.+...
T Consensus       166 g~NddEi~~l~~~~~~~  182 (329)
T PRK13361        166 GQNDDEVLDLVEFCRER  182 (329)
T ss_pred             CCCHHHHHHHHHHHHHC
T ss_conf             87888999999999748


No 214
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=67.16  E-value=9.9  Score=18.46  Aligned_cols=29  Identities=24%  Similarity=0.420  Sum_probs=26.6

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             68664470999999998888096599985
Q gi|254780268|r    4 KILIANRGEIALRILRACKELGIPTVAVH   32 (443)
Q Consensus         4 ~iLianrGeia~riira~~elGi~tv~v~   32 (443)
                      |++|.+-|.|++.+...++++|.++..+.
T Consensus         1 rv~iiGgG~ig~E~A~~l~~~G~~Vtiie   29 (82)
T pfam00070         1 RVVVVGGGYIGLEFASALAKLGSKVTVVE   29 (82)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf             99999988999999999986392789981


No 215
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=67.01  E-value=10  Score=18.37  Aligned_cols=44  Identities=20%  Similarity=0.187  Sum_probs=29.8

Q ss_pred             CCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             33012200023457821688875066899999875432125899816884
Q gi|254780268|r  149 IGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       149 iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      +...-+.||.    .|-...+.+++++.+.+++|.+.|.+  +.++|+||
T Consensus       112 ~d~~~~~~~~----tK~~~~v~~~~~~~~~~~~A~~~A~~--~~GPV~l~  155 (164)
T cd07039         112 VDLLALFKDV----AVYNETVTSPEQLPELLDRAIRTAIA--KRGVAVLI  155 (164)
T ss_pred             CCHHHHHHHH----HCEEEECCCHHHHHHHHHHHHHHHCC--CCCCEEEE
T ss_conf             7499998997----45788859999999999999998540--89999999


No 216
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787    Serine and threonine dehydratases ,  are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown  that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue.    This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=66.79  E-value=7.2  Score=19.43  Aligned_cols=62  Identities=21%  Similarity=0.372  Sum_probs=34.6

Q ss_pred             HHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHH
Q ss_conf             99988880965999858557718776758579991899853000698999999987099899458531310976668898
Q gi|254780268|r   17 ILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILE   96 (443)
Q Consensus        17 iira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e   96 (443)
                      +.=++++||++.+.|  .|.+.+.                        ==++++|..|..-|+=|--| ||..++|..++
T Consensus        82 VAlsa~~LG~~A~IV--MP~tTP~------------------------IKV~AVk~~GgeVvLhG~~y-~~A~~~A~eL~  134 (508)
T TIGR01124        82 VALSAEKLGLKAVIV--MPETTPD------------------------IKVDAVKAFGGEVVLHGDNY-DDAKDHAIELA  134 (508)
T ss_pred             HHHHHHHCCCCEEEE--CCCCCCC------------------------CCHHHEECCCCEEEEECCCH-HHHHHHHHHHH
T ss_conf             987663179726987--8888822------------------------00120312698799737985-79999999999


Q ss_pred             -HCCCEEECC
Q ss_conf             -459216268
Q gi|254780268|r   97 -DHHIKFIGP  105 (443)
Q Consensus        97 -~~Gi~fIGP  105 (443)
                       +.|++||-|
T Consensus       135 q~~GlTfi~P  144 (508)
T TIGR01124       135 QEKGLTFIHP  144 (508)
T ss_pred             HHCCCEEECC
T ss_conf             7368865278


No 217
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=66.79  E-value=10  Score=18.34  Aligned_cols=77  Identities=21%  Similarity=0.319  Sum_probs=54.8

Q ss_pred             CHHCCHHHHHHHHHHCCCCEEE--CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCC--C
Q ss_conf             0006989999999870998994--58531310976668898459216268989998721899887766422443324--3
Q gi|254780268|r   58 DSYLNIQQIVAACEVTGADAIH--PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVP--G  133 (443)
Q Consensus        58 ~sYldi~~ii~~a~~~~~daih--PGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p--~  133 (443)
                      .|+| ..++-+.|++.|++..-  -+||      +|-+.+.+..+..+||-.+.     -+..+|+.+.+.|+|++.  +
T Consensus        13 Ss~l-a~~m~k~A~~~gi~~~i~A~~~~------~~~d~~~~yDvilLaPQv~~-----~~~~lk~~ad~~Gi~v~~i~~   80 (99)
T cd05565          13 SGLL-ANALNKGAKERGVPLEAAAGAYG------SHYDMIPDYDLVILAPQMAS-----YYDELKKDTDRLGIKLVTTTG   80 (99)
T ss_pred             HHHH-HHHHHHHHHHCCCCEEEEEEECH------HHHHHHHCCCEEEECHHHHH-----HHHHHHHHHHHCCCEEEEECH
T ss_conf             8999-99999999981997699951034------48988707999999850888-----899999999983991887083


Q ss_pred             --CCCC--CHHHHHHHH
Q ss_conf             --3345--579998732
Q gi|254780268|r  134 --SGEV--YPHTAMPIA  146 (443)
Q Consensus       134 --~~~~--~~~ea~~~a  146 (443)
                        +...  +.+.+++|+
T Consensus        81 ~~Yi~lt~d~~~al~f~   97 (99)
T cd05565          81 KQYIELTRDPDGALKFV   97 (99)
T ss_pred             HHEEEEECCHHHHHHHH
T ss_conf             45222115988867775


No 218
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=66.28  E-value=8.8  Score=18.83  Aligned_cols=30  Identities=13%  Similarity=0.211  Sum_probs=12.5

Q ss_pred             EEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             8875066899999875432125899816884
Q gi|254780268|r  168 IAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       168 vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      .+.+.+++.+.+++|.+.+.+. .-++|+++
T Consensus       131 ~v~~~~~~~~~l~~A~~~A~~g-rpGPV~l~  160 (574)
T PRK07979        131 LVKQTEDIPQVLKKAFWLAASG-RPGPVVVD  160 (574)
T ss_pred             EECCCCCCHHHHHHHHHHHHCC-CCCCEEEC
T ss_conf             8246455789999999998538-99655625


No 219
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=66.16  E-value=11  Score=18.26  Aligned_cols=99  Identities=17%  Similarity=0.098  Sum_probs=47.9

Q ss_pred             HCCHHHHHHHHHHCCCCEEECCCCHHHCCHHH----HHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             06989999999870998994585313109766----68898459216268989998721899887766422443324333
Q gi|254780268|r   60 YLNIQQIVAACEVTGADAIHPGYGFLSENAKF----AEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG  135 (443)
Q Consensus        60 Yldi~~ii~~a~~~~~daihPGyGfLsEn~~f----a~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~  135 (443)
                      +-|++.|++.+++.+.-..      |+-|+.+    ++.+...|...++-|-+..+..-|+.+-           .||..
T Consensus        86 r~dl~eIv~~a~~~g~~v~------l~TNG~Ll~k~i~~~~~~~~~~~~VsLDG~~e~HD~~r~-----------~~G~F  148 (318)
T TIGR03470        86 HPEIDEIVRGLVARKKFVY------LCTNALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVC-----------REGVF  148 (318)
T ss_pred             CCCHHHHHHHHHHCCCEEE------EECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHC-----------CCCHH
T ss_conf             6479999999997599799------977552009999998518883699980178788668871-----------79779


Q ss_pred             CCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHH
Q ss_conf             455799987320033012200023457821688875066899999875
Q gi|254780268|r  136 EVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQAR  183 (443)
Q Consensus       136 ~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~  183 (443)
                       ...-++...|.+.||+|-+..+       +.--.+++++.+.|+.+.
T Consensus       149 -d~av~aIr~ak~~G~~V~iN~T-------vf~~~n~~~i~~~~d~~~  188 (318)
T TIGR03470       149 -DRAVEAIREAKARGFRVTTNTT-------LFNDTDPEEVAEFFDYLT  188 (318)
T ss_pred             -HHHHHHHHHHHHCCCCEEEEEE-------EECCCCHHHHHHHHHHHH
T ss_conf             -9999999999986994679989-------706899999999999998


No 220
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase; InterPro: IPR014092   Members of this family are examples of pyruvate oxidase (1.2.3.3 from EC), an enzyme with FAD and TPP as cofactors that catalyses the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase (1.2.2.2 from EC) as in Escherichia coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name..
Probab=66.04  E-value=11  Score=18.25  Aligned_cols=88  Identities=16%  Similarity=0.292  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHCCCCEEE--C---CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCC-CC
Q ss_conf             89999999870998994--5---853131097666889845921626898999872189988776642244332433-34
Q gi|254780268|r   63 IQQIVAACEVTGADAIH--P---GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGS-GE  136 (443)
Q Consensus        63 i~~ii~~a~~~~~daih--P---GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~-~~  136 (443)
                      +|.=|..|-.++--||.  |   ||-=-.+|-.-+......  .++-|.++.-+.  +  ..-++++.+.-|++=.- +.
T Consensus       138 ~DeAiR~Ay~~~GvAVv~IP~dfG~~eI~~~~y~~as~~~~--~~~~P~~~~~~v--~--~~~~~l~aA~~P~iY~G~Ga  211 (577)
T TIGR02720       138 IDEAIRAAYAHNGVAVVTIPVDFGWQEIPDNDYYAASVSEK--LVLLPAPDEEEV--K--KAVKLLKAAKRPVIYVGVGA  211 (577)
T ss_pred             HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHH--H--HHHHHHHHCCCCEEEEEECC
T ss_conf             78999999850798899857877843155434433445411--145888788899--9--99999984189769983075


Q ss_pred             CC-HHHHHHHHHCCCCHHHHH
Q ss_conf             55-799987320033012200
Q gi|254780268|r  137 VY-PHTAMPIAKEIGFPVLVK  156 (443)
Q Consensus       137 ~~-~~ea~~~a~~iGyPviiK  156 (443)
                      .. .+++.+.++++--|+|.=
T Consensus       212 ~~A~e~l~~lS~~lk~Pli~t  232 (577)
T TIGR02720       212 RKAGEELKALSEKLKVPLIST  232 (577)
T ss_pred             CHHHHHHHHHHHHCCCCEEEE
T ss_conf             247899999998639884861


No 221
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=65.72  E-value=11  Score=18.20  Aligned_cols=67  Identities=18%  Similarity=0.300  Sum_probs=43.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf             8664470999999998888096599985855771877675857999189985300069899999998709989945
Q gi|254780268|r    5 ILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP   80 (443)
Q Consensus         5 iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP   80 (443)
                      |+|++-|.++..+.+.+++.| +.++|..+++........-.+ +..|..      .|.+ +++-+.-.+++++.-
T Consensus         1 viI~G~g~~G~~la~~L~~~~-~v~vId~d~~~~~~~~~~~~~-vi~GD~------~~~~-~L~~a~i~~a~~vi~   67 (115)
T pfam02254         1 IIIIGYGRVGRSLAEELREGG-PVVVIDKDPERVEELREEGVP-VVVGDA------TDEE-VLEEAGIEDADAVVA   67 (115)
T ss_pred             CEEECCCHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHCCCE-EEEEEC------CCHH-HHHHHCCCCCCEEEE
T ss_conf             999878889999999998089-999999987998778866986-999956------8866-787619202879999


No 222
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=65.62  E-value=11  Score=18.19  Aligned_cols=13  Identities=15%  Similarity=0.297  Sum_probs=6.2

Q ss_pred             EEEEECCCHHHHH
Q ss_conf             9999559989999
Q gi|254780268|r  384 KLIVHGKNRKECM  396 (443)
Q Consensus       384 KiI~~g~~R~~Ai  396 (443)
                      ++++++++++++-
T Consensus       510 ~IiaRa~~~~~~~  522 (558)
T PRK10669        510 EIIARAHYDDEVA  522 (558)
T ss_pred             EEEEEECCHHHHH
T ss_conf             6999979899999


No 223
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=65.59  E-value=11  Score=18.19  Aligned_cols=37  Identities=14%  Similarity=0.217  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEE
Q ss_conf             999999999999988651543410245897288349982
Q gi|254780268|r  247 AQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIE  285 (443)
Q Consensus       247 ~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflE  285 (443)
                      ++..+++.+.+.++-+  .|...-.|||-+++|++|+|.
T Consensus       256 P~v~~~L~~~~~~lE~--h~~d~qdiEftie~gkl~~LQ  292 (529)
T PRK05878        256 PAVYDQLMAAARTLER--LGGDVQEIEFTVEDGKLWLLQ  292 (529)
T ss_pred             HHHHHHHHHHHHHHHH--HCCCCCEEEECCCCCCEEEEC
T ss_conf             5899999999999998--659834688615678478741


No 224
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=65.34  E-value=11  Score=18.15  Aligned_cols=72  Identities=21%  Similarity=0.292  Sum_probs=42.3

Q ss_pred             EEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCHHHCCC---CHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCE
Q ss_conf             686644---7099999999888809659998585577187---7675857999189985300069899999998709989
Q gi|254780268|r    4 KILIAN---RGEIALRILRACKELGIPTVAVHSTADSGAM---HVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADA   77 (443)
Q Consensus         4 ~iLian---rGeia~riira~~elGi~tv~v~s~~D~~a~---~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~da   77 (443)
                      ||.+.+   .|-+|-.+...+.++|+..+.++ +.+....   -...-|-.+.+.- +.  ..-++-.+++.|++.|+..
T Consensus         2 RI~~~GvG~S~~va~~~~~kl~r~G~~s~~~~-~~~~~~~~~~~i~~~Dv~i~iS~-SG--~T~e~~~~~~~ak~~g~~v   77 (128)
T cd05014           2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLH-PTEALHGDLGMVTPGDVVIAISN-SG--ETDELLNLLPHLKRRGAPI   77 (128)
T ss_pred             EEEEEECCHHHHHHHHHHHHHHHCCCCEEECC-CHHHHHCCCCCCCCCCEEEEEEC-CC--CCHHHHHHHHHHHHCCCCE
T ss_conf             49999426799999999999995799457547-31555411347789999999979-99--9867999999998637858


Q ss_pred             EE
Q ss_conf             94
Q gi|254780268|r   78 IH   79 (443)
Q Consensus        78 ih   79 (443)
                      |.
T Consensus        78 I~   79 (128)
T cd05014          78 IA   79 (128)
T ss_pred             EE
T ss_conf             99


No 225
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=65.26  E-value=1.9  Score=23.49  Aligned_cols=58  Identities=24%  Similarity=0.187  Sum_probs=33.5

Q ss_pred             CCCEEEECC--CCCCCEECCCCCCC---EEEEEEE-CCCHHHHHHHHHHHHHHCEECCCCCCHH
Q ss_conf             984467776--02387707776843---3899995-5998999999998765408826377888
Q gi|254780268|r  359 GLGIRMDSA--SYQGYTVPSYYDSL---IAKLIVH-GKNRKECMMRLNRALNEIIIDGIKTTIP  416 (443)
Q Consensus       359 ~~gvRvDt~--~~~G~~i~~~yDsm---laKiI~~-g~~R~~Ai~~l~~aL~~~~I~Gv~TN~~  416 (443)
                      -.|||.|||  .+.+..+...||.+   -.|||+. |-+-+..++.++..=.....-||.||+-
T Consensus       264 ~~GVR~DSGd~~~~~~kvr~~ld~~G~~~~~Ii~Sdg~lde~~i~~l~~~g~~~d~FGvGT~L~  327 (405)
T COG1488         264 LDGVRLDSGDPRELSEKVRAHLDKLGYDPVKIIVSDGLLDEKIIALLRAFGARNDAFGVGTNLT  327 (405)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHC
T ss_conf             3389779999799999999999975998508998378535899999998178720765655431


No 226
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=64.75  E-value=9.8  Score=18.49  Aligned_cols=47  Identities=21%  Similarity=0.265  Sum_probs=33.2

Q ss_pred             CHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
Q ss_conf             012200023457821688875066899999875432125899816884434201
Q gi|254780268|r  151 FPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENP  204 (443)
Q Consensus       151 yPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~  204 (443)
                      -|=..|-+.+-|.+|. .|++++||.++++.|...      +++.+||=-|+..
T Consensus       126 ~~d~~~lA~a~G~~~~-~V~~~~el~~al~~a~~~------~gp~liev~vD~~  172 (177)
T cd02010         126 NPDFVKYAESFGAKGY-RIESADDLLPVLERALAA------DGVHVIDCPVDYS  172 (177)
T ss_pred             CCCHHHHHHHCCCEEE-EECCHHHHHHHHHHHHHC------CCCEEEEEEECCH
T ss_conf             9998999998798799-989999999999999848------9959999998623


No 227
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733   Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway .   TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process.
Probab=64.73  E-value=11  Score=18.08  Aligned_cols=84  Identities=26%  Similarity=0.345  Sum_probs=42.9

Q ss_pred             HHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHH---HHHHHHCCC-CCCCCCCCC-----
Q ss_conf             99998709989945853131097666889845921626898999872189988---776642244-332433345-----
Q gi|254780268|r   67 VAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITA---KKTAQQLGI-PVVPGSGEV-----  137 (443)
Q Consensus        67 i~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~---k~~a~~~GV-P~~p~~~~~-----  137 (443)
                      +++|...++|+||=|.+=|  ++..|+++--.. .+||-|....+.+ .+...   +..+.-.|+ |+-|-.+..     
T Consensus        75 vdlA~~~~ADGvHlGQ~D~--p~~~aR~l~G~~-~iiG~S~~~~~e~-~~a~~C~~~~gaDY~G~Gp~fpT~TK~~~~~~  150 (210)
T TIGR00693        75 VDLALALGADGVHLGQDDL--PVSEARKLLGPD-KIIGVSTHNLEEL-AEAAACELKEGADYIGVGPIFPTPTKKDAAPP  150 (210)
T ss_pred             HHHHHHHCCCEEEECCCCC--CHHHHHHHCCCC-CEEEEEECCHHHH-HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC
T ss_conf             9999983798776678889--989999853899-5798533798999-99998764078988886371158878898776


Q ss_pred             -CHHHHHHHHHCC--CCHHH
Q ss_conf             -579998732003--30122
Q gi|254780268|r  138 -YPHTAMPIAKEI--GFPVL  154 (443)
Q Consensus       138 -~~~ea~~~a~~i--GyPvi  154 (443)
                       ..+-+.++++..  +.|++
T Consensus       151 ~g~e~l~~~~~~~~h~~P~V  170 (210)
T TIGR00693       151 VGLELLREIAATSIHDIPIV  170 (210)
T ss_pred             CCHHHHHHHHHHCCCCCCEE
T ss_conf             48889999998617887658


No 228
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=64.66  E-value=4.1  Score=21.18  Aligned_cols=38  Identities=26%  Similarity=0.411  Sum_probs=27.3

Q ss_pred             CEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHH
Q ss_conf             57999189985300069899999998709989945853131
Q gi|254780268|r   46 DESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLS   86 (443)
Q Consensus        46 De~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLs   86 (443)
                      |+.+..+|.+   ..-|++.+++.+.+.++||+---+|.+.
T Consensus        27 DHG~~~Gp~~---gl~d~~~~i~~~~~~g~dai~~~~G~~~   64 (266)
T PRK07226         27 DHGVSHGPID---GLVDMRETVNKVAEGGADAVLMHKGLAR   64 (266)
T ss_pred             CCCCCCCCCC---CCCCHHHHHHHHHHCCCCEEEECHHHHH
T ss_conf             7775448875---5359999999998639999996767786


No 229
>pfam06973 DUF1297 Domain of unknown function (DUF1297). This family represents the C-terminus (approximately 200 residues) of a number of archaeal proteins of unknown function. One member is annotated as being a possible carboligase enzyme.
Probab=64.56  E-value=11  Score=18.06  Aligned_cols=50  Identities=14%  Similarity=0.137  Sum_probs=41.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH------CCCCCCEEEEEEC-CCCEEEEECCCCCC
Q ss_conf             445588999999999999988651------5434102458972-88349982276543
Q gi|254780268|r  241 HSPVISAQDRTEIGETCVKAMKKI------DYRGAGTIEFLYE-NGQFYFIEMNTRLQ  291 (443)
Q Consensus       241 Pap~l~~~~~~~i~~~A~~~~~~~------g~~g~~tvEFl~~-~~~~yflEvN~Rlq  291 (443)
                      |+ .+-+.+..++.+++.+..++.      |.-|....|.+++ +.+|++-||.+|+.
T Consensus        87 p~-vlRESLL~~vfe~ge~fV~ask~l~~PG~iGPFcLq~ivt~dle~vvFevS~RI~  143 (188)
T pfam06973        87 PA-VLRESLLEKVFEMGEKFVEASKELVPPGIIGPFCLQSIVTDDLEFVVFEVSARIV  143 (188)
T ss_pred             CC-EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECCCC
T ss_conf             31-4407657999999999999999856998613444667887986199999853004


No 230
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=64.52  E-value=11  Score=18.05  Aligned_cols=118  Identities=19%  Similarity=0.297  Sum_probs=75.5

Q ss_pred             CHHCCHHHHHHHHHHCCCCEE--ECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             000698999999987099899--458531310976668898459216268989998721899887766422443324333
Q gi|254780268|r   58 DSYLNIQQIVAACEVTGADAI--HPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG  135 (443)
Q Consensus        58 ~sYldi~~ii~~a~~~~~dai--hPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~  135 (443)
                      +.+..++.+++..+..++-+|  +|-.||+.  ..|-.-+|+.|+-| |-          ...+-+.+.+.++-+.|+. 
T Consensus        98 DPf~~~~~~L~~L~~~gf~gV~NFPTv~~iD--G~~R~~lEetGmG~-~~----------Evemlr~A~~k~l~t~~yV-  163 (276)
T COG5564          98 DPFCRMVDFLKELKTAGFSGVQNFPTVGLID--GRMRASLEETGMGY-GL----------EVEMLREAHAKDLLTTPYV-  163 (276)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC--CHHHHHHHHHCCCH-HH----------HHHHHHHHHHCCCCCCCEE-
T ss_conf             9403189999999855886401577257765--35651488738526-88----------9999999986364334243-


Q ss_pred             CCCHHHHHHHHHCCCCHHHHH--CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             455799987320033012200--02345782168887506689999987543212589
Q gi|254780268|r  136 EVYPHTAMPIAKEIGFPVLVK--ASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFG  191 (443)
Q Consensus       136 ~~~~~ea~~~a~~iGyPviiK--p~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fg  191 (443)
                       .+.+++.+.+ +.|--+++-  -...||..|.+-..+.++..+..+.+..-+.+-+.
T Consensus       164 -~s~~eAqa~~-~aGadiiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~k  219 (276)
T COG5564         164 -FSFEEAQAMT-KAGADIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVRK  219 (276)
T ss_pred             -CCHHHHHHHH-HCCCCEEEECCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             -6888999998-7073046503443125501255656788899999999999754301


No 231
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=64.49  E-value=9.8  Score=18.50  Aligned_cols=31  Identities=16%  Similarity=0.217  Sum_probs=20.4

Q ss_pred             EEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             88875066899999875432125899816884
Q gi|254780268|r  167 RIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       167 ~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      ..+++++++.+.+++|.+.|... .-++|+|+
T Consensus       148 ~~v~~~~~i~~~l~~A~~~A~~g-rpGPV~l~  178 (615)
T PRK07418        148 YVVRDPSDMARIVAEAFHIASSG-RPGPVLID  178 (615)
T ss_pred             EEECCHHHHHHHHHHHHHHHHCC-CCCCEEEE
T ss_conf             68547555399999999998507-99876997


No 232
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=64.35  E-value=11  Score=18.03  Aligned_cols=18  Identities=17%  Similarity=0.353  Sum_probs=8.4

Q ss_pred             HCCHHHHHHHHHHCCCCE
Q ss_conf             069899999998709989
Q gi|254780268|r   60 YLNIQQIVAACEVTGADA   77 (443)
Q Consensus        60 Yldi~~ii~~a~~~~~da   77 (443)
                      |-|.+.+-++.+.++.+-
T Consensus        26 y~s~~~~~~av~asg~~i   43 (262)
T COG2022          26 YPSPAVLAEAVRASGSEI   43 (262)
T ss_pred             CCCHHHHHHHHHHCCCCE
T ss_conf             999899999999727866


No 233
>smart00090 RIO RIO-like kinase.
Probab=64.18  E-value=11  Score=18.01  Aligned_cols=55  Identities=18%  Similarity=0.286  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCEEEE--EECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf             9999999999999886515434102458--972883499822765433201678863
Q gi|254780268|r  247 AQDRTEIGETCVKAMKKIDYRGAGTIEF--LYENGQFYFIEMNTRLQVEHPVTEAIT  301 (443)
Q Consensus       247 ~~~~~~i~~~A~~~~~~~g~~g~~tvEF--l~~~~~~yflEvN~Rlqveh~vte~~t  301 (443)
                      .+...++.+.-.++.+..+++-.--=||  |+.++++|+|.+--=+.++||-.+..-
T Consensus       151 ~~~~~~il~~~~~~y~~g~lVHgDLSEyNIL~~~~~~~iID~~QaV~~~hp~A~~~L  207 (237)
T smart00090      151 FELYDDILEEMRKLYKEGELVHGDLSEYNILVHDGKVVIIDVSQSVELDHPMALEFL  207 (237)
T ss_pred             HHHHHHHHHHHHHHHHHCCEEECCHHHHHHEEECCCEEEEECCCCCCCCCCCHHHHH
T ss_conf             999999999999999827952036046551420896799946752368998889999


No 234
>PRK03202 6-phosphofructokinase; Provisional
Probab=63.97  E-value=12  Score=17.98  Aligned_cols=36  Identities=22%  Similarity=0.303  Sum_probs=27.0

Q ss_pred             CCEEEEEECCCHH------HHH-HHHHHHHCCCEEEEECCCHH
Q ss_conf             9706866447099------999-99988880965999858557
Q gi|254780268|r    1 MISKILIANRGEI------ALR-ILRACKELGIPTVAVHSTAD   36 (443)
Q Consensus         1 m~~~iLianrGei------a~r-iira~~elGi~tv~v~s~~D   36 (443)
                      |||||.|...|=.      ++| +++++...|++.+.++---+
T Consensus         1 ~~kriaIltsGG~~pGmNa~ir~vv~~a~~~g~~v~G~~~G~~   43 (323)
T PRK03202          1 MMKKIGVLTSGGDAPGMNAAIRGVVRTAISEGLEVYGIYNGYL   43 (323)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf             9866999936888677899999999999978999999916778


No 235
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=63.88  E-value=12  Score=17.97  Aligned_cols=67  Identities=10%  Similarity=0.032  Sum_probs=31.2

Q ss_pred             ECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             45853131097666889845921626898999872189988776642-24433243334557999873200
Q gi|254780268|r   79 HPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQ-LGIPVVPGSGEVYPHTAMPIAKE  148 (443)
Q Consensus        79 hPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~-~GVP~~p~~~~~~~~ea~~~a~~  148 (443)
                      |=|.....+..+|-+.+.++|++++=-+=.+.+   .+...++.+.+ .++++.+.....+..-...+..+
T Consensus        20 ~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~---s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~   87 (269)
T COG0647          20 YRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTR---SREVVAARLSSLGGVDVTPDDIVTSGDATADYLAK   87 (269)
T ss_pred             EECCCCCCHHHHHHHHHHHCCCEEEEEECCCCC---CHHHHHHHHHHHCCCCCCHHHEECHHHHHHHHHHH
T ss_conf             838923815999999999869939999589989---98999999986269988877766389999999985


No 236
>PRK05568 flavodoxin; Provisional
Probab=63.73  E-value=12  Score=17.95  Aligned_cols=102  Identities=21%  Similarity=0.290  Sum_probs=55.8

Q ss_pred             CEEEEEE------CCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCC---HHHHHHHH--
Q ss_conf             7068664------470999999998888096599985855771877675857999189985300069---89999999--
Q gi|254780268|r    2 ISKILIA------NRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLN---IQQIVAAC--   70 (443)
Q Consensus         2 ~~~iLia------nrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYld---i~~ii~~a--   70 (443)
                      ||||+|.      |--.+|-.|...+++.|+++-+.+- .|.....+..+| ++.+|.++.....+.   +...++-.  
T Consensus         1 M~kv~IvY~S~~GnTe~mA~~Iaegl~~~Gv~V~~~~~-~~~~~~di~~~d-~i~~GspT~~~~~~~~~~~~~~~~~~~~   78 (142)
T PRK05568          1 MKKLNIIYWSGTGNTEAMANLIAEGAKENGLEVKLLNV-SEASVDDVENAD-VVALGSPAMGCEVLEEGEMEPFVEEISG   78 (142)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEE-CCCCHHHHHHCC-EEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             97299999899854999999999999866983999980-049988997399-6899477648766773667999999886


Q ss_pred             -HHCCCCEEECCCCHHH-C-CHHHHHHHHHCCCEEECC
Q ss_conf             -8709989945853131-0-976668898459216268
Q gi|254780268|r   71 -EVTGADAIHPGYGFLS-E-NAKFAEILEDHHIKFIGP  105 (443)
Q Consensus        71 -~~~~~daihPGyGfLs-E-n~~fa~~~e~~Gi~fIGP  105 (443)
                       .+.+.-+++.-||.-| | -..+.+.+++.|...++|
T Consensus        79 ~~~gK~~a~FGSyGWg~Ge~v~~~~e~l~~~g~~~v~~  116 (142)
T PRK05568         79 LVKGKKTLLFGSYGWGTGEWMEDWKERMEGYGANLVND  116 (142)
T ss_pred             HCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
T ss_conf             65999899999434898739999999999769978178


No 237
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=63.71  E-value=12  Score=17.95  Aligned_cols=18  Identities=17%  Similarity=0.226  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHCCCEEEEE
Q ss_conf             999999888809659998
Q gi|254780268|r   14 ALRILRACKELGIPTVAV   31 (443)
Q Consensus        14 a~riira~~elGi~tv~v   31 (443)
                      |..+.-++..+|.....|
T Consensus        54 gkk~Aa~L~s~G~~a~fv   71 (202)
T COG0794          54 GKKFAARLASTGTPAFFV   71 (202)
T ss_pred             HHHHHHHHHCCCCCEEEE
T ss_conf             999999997359955996


No 238
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.68  E-value=12  Score=17.95  Aligned_cols=87  Identities=15%  Similarity=0.214  Sum_probs=51.4

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf             06866447099999999888809659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY   82 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy   82 (443)
                      |||||.+-|.-.+-+.+-++++|++..+...+++.........-+.+..+  ..      .      ..-.++|.|..--
T Consensus        13 k~V~V~GlG~sG~a~a~~L~~~G~~v~~~D~~~~~~~~~~~~~~~~~~~~--~~------~------~~~~~~d~vV~SP   78 (487)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSSS--DA------V------QQIADYALVVTSP   78 (487)
T ss_pred             CEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCEECCC--CC------H------HHHCCCCEEEECC
T ss_conf             98999915683899999999786979999898257799986599486376--22------6------5646778899899


Q ss_pred             CHHHCCHHHHHHHHHCCCEEEC
Q ss_conf             3131097666889845921626
Q gi|254780268|r   83 GFLSENAKFAEILEDHHIKFIG  104 (443)
Q Consensus        83 GfLsEn~~fa~~~e~~Gi~fIG  104 (443)
                      |.-..|+.+. ...+.|+++++
T Consensus        79 GI~~~~p~l~-~a~~~gi~i~~   99 (487)
T PRK03369         79 GFPPTAPVLA-AAAAAGVPIWG   99 (487)
T ss_pred             CCCCCCHHHH-HHHHCCCCEEE
T ss_conf             5799899999-99988990765


No 239
>PRK05370 argininosuccinate synthase; Validated
Probab=63.63  E-value=12  Score=17.94  Aligned_cols=30  Identities=20%  Similarity=0.161  Sum_probs=18.9

Q ss_pred             EEEEEECCCHHHHH-HHHHHHHCCCEEEEEC
Q ss_conf             06866447099999-9998888096599985
Q gi|254780268|r    3 SKILIANRGEIALR-ILRACKELGIPTVAVH   32 (443)
Q Consensus         3 ~~iLianrGeia~r-iira~~elGi~tv~v~   32 (443)
                      |||..|=.|=.-.. +++=++|.|+++|++.
T Consensus        12 kKVvLAYSGGLDTSv~l~wL~e~g~eVia~t   42 (447)
T PRK05370         12 QRVGIAFSGGLDTSAALLWMRQKGAVPYAYT   42 (447)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf             8899995898279999999987598799999


No 240
>cd01018 ZntC Metal binding protein ZntC.  These proteins are predicted to function as initial receptors in ABC transport of metal ions.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains.  In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=63.61  E-value=9.5  Score=18.58  Aligned_cols=32  Identities=25%  Similarity=0.392  Sum_probs=11.9

Q ss_pred             CCCCCCCCHHCCHHHHHHHHHHCCCCEE-ECCCCH
Q ss_conf             1899853000698999999987099899-458531
Q gi|254780268|r   51 IGPPSSKDSYLNIQQIVAACEVTGADAI-HPGYGF   84 (443)
Q Consensus        51 i~~~~~~~sYldi~~ii~~a~~~~~dai-hPGyGf   84 (443)
                      ++++..+.+|-  ...=++.+-.++|.| +-|.||
T Consensus        30 vp~g~dPH~ye--~~psd~~~l~~ADlvv~~G~~l   62 (266)
T cd01018          30 VPPGSNPHTYE--PKPQQMKKLSEADLYFRIGLGF   62 (266)
T ss_pred             CCCCCCCCCCC--CCHHHHHHHHCCCEEEEECCCH
T ss_conf             69997964686--9999999996698999958734


No 241
>pfam02776 TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain.
Probab=63.59  E-value=12  Score=17.93  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=23.9

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             821688875066899999875432125899816884
Q gi|254780268|r  163 GRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       163 G~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      .|-...+.+.+++.+.+++|.+.+... ..++|+|+
T Consensus       124 tk~~~~v~~~~~~~~~i~~A~~~a~~~-~~GPV~l~  158 (172)
T pfam02776       124 TKWAERVTSPDEIPEALDRAFRTALSG-RPGPVYLE  158 (172)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHCCC-CCCCEEEE
T ss_conf             668888899999999999999998329-99779999


No 242
>TIGR01116 ATPase-IIA1_Ca calcium-translocating P-type ATPase, SERCA-type; InterPro: IPR005782    This model describes Ca2+ ATPases (3.6.3.8 from EC) from eukaryotes and includes significant representatives from plants. Plasma membrane Ca2+ ATPases are primarily responsible for extrusion of calcium from cytoplasmic milieu to outside, coupled to the hydrolyis of ATP. Besides Ca2+ ATPases, Na+/Ca2+ exchangers are also involved in the maintenance of Ca2+ homestasis in the cell. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=63.38  E-value=12  Score=17.91  Aligned_cols=33  Identities=15%  Similarity=0.103  Sum_probs=13.3

Q ss_pred             HHHHHHHHCCCCCCE-EEEE--ECCCCEEEEECCCC
Q ss_conf             999886515434102-4589--72883499822765
Q gi|254780268|r  257 CVKAMKKIDYRGAGT-IEFL--YENGQFYFIEMNTR  289 (443)
Q Consensus       257 A~~~~~~~g~~g~~t-vEFl--~~~~~~yflEvN~R  289 (443)
                      |..+|+.+|.-+..| -||.  -+.+-..|-=+.|+
T Consensus       496 A~AicR~IG~lsSfTG~EF~~m~~~~~~~FSR~ePs  531 (800)
T TIGR01116       496 AEAICRRIGILSSFTGREFDEMGPKKALVFSRVEPS  531 (800)
T ss_pred             HHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEECCCH
T ss_conf             899976750102420003650060146687605825


No 243
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=63.32  E-value=12  Score=17.90  Aligned_cols=15  Identities=40%  Similarity=0.565  Sum_probs=8.4

Q ss_pred             CCCCCCEEEECCCCC
Q ss_conf             689984467776023
Q gi|254780268|r  356 APGGLGIRMDSASYQ  370 (443)
Q Consensus       356 ~p~~~gvRvDt~~~~  370 (443)
                      .|.|-|+|-|.+.-.
T Consensus       368 ~~aGlgiRed~~~IT  382 (395)
T PHA02117        368 DAVGLGIREDDGRIT  382 (395)
T ss_pred             EEEEEEEECCCCCCC
T ss_conf             874899942797335


No 244
>TIGR00715 precor6x_red precorrin-6x reductase; InterPro: IPR003723   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y , .; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process.
Probab=63.22  E-value=12  Score=17.89  Aligned_cols=90  Identities=17%  Similarity=0.294  Sum_probs=55.7

Q ss_pred             EEEEECCCHHHHHHHHHHHHCC-CEEEEECCCHHHCCCCHHH-CCEEEECCCCCCCCHHCCHHH-HHHHHHHCCCCEE--
Q ss_conf             6866447099999999888809-6599985855771877675-857999189985300069899-9999987099899--
Q gi|254780268|r    4 KILIANRGEIALRILRACKELG-IPTVAVHSTADSGAMHVRL-ADESVCIGPPSSKDSYLNIQQ-IVAACEVTGADAI--   78 (443)
Q Consensus         4 ~iLianrGeia~riira~~elG-i~tv~v~s~~D~~a~~~~~-ADe~~~i~~~~~~~sYldi~~-ii~~a~~~~~dai--   78 (443)
                      +||+.+=-+=+++|++.++.+| ++.+.-.|....+...-.. |.. +.+++       ||-+. |-+..+++++|.|  
T Consensus         2 ~vll~GGT~dsr~~~~~L~~~~~~~i~~t~tt~~~~~l~~~~~a~~-v~~ga-------L~~~EGL~~~l~~~~i~~~vD   73 (260)
T TIGR00715         2 SVLLMGGTKDSRAIAKKLRALGDVEILVTVTTEEGKKLLEISQASK-VVTGA-------LDKDEGLRELLKEESIDILVD   73 (260)
T ss_pred             EEEEEECCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCC-EEECC-------CCCCCCHHHHHHHCCCCEEEE
T ss_conf             6899717778999997403787589998741577630010037771-58757-------488875378886449638985


Q ss_pred             --ECCCCHHHCC-HHHHHHHHHCCCEEEC
Q ss_conf             --4585313109-7666889845921626
Q gi|254780268|r   79 --HPGYGFLSEN-AKFAEILEDHHIKFIG  104 (443)
Q Consensus        79 --hPGyGfLsEn-~~fa~~~e~~Gi~fIG  104 (443)
                        ||   |...- ..-.+.|.+.|++||=
T Consensus        74 AtHP---FA~~~t~~a~~vc~E~~~~Yvr   99 (260)
T TIGR00715        74 ATHP---FAAQITKNALEVCKELGIPYVR   99 (260)
T ss_pred             CCCH---HHHHHHHHHHHHHHHCCCEEEE
T ss_conf             7973---5899999999999761981799


No 245
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.21  E-value=12  Score=17.89  Aligned_cols=114  Identities=18%  Similarity=0.228  Sum_probs=56.5

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCH
Q ss_conf             86644709999999988880965999858557718776758579991899853000698999999987099899458531
Q gi|254780268|r    5 ILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGF   84 (443)
Q Consensus         5 iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGf   84 (443)
                      |+....-+-|+.+.+++.+-|++.+=|--.                  .   +.+.--+..+++...+...+. .-|-|=
T Consensus        21 Vvr~~~~e~a~~~a~aL~~gGi~~iEiTlr------------------t---~~a~~~i~~l~~~~~~~~p~~-~iGaGT   78 (223)
T PRK07114         21 VFYHSDIEVAKKVVKACYDGGVRAFEFTNR------------------G---DFAHEVFGELVKYAAKECPEM-ILGVGS   78 (223)
T ss_pred             EEEECCHHHHHHHHHHHHHCCCCEEEEECC------------------C---CCHHHHHHHHHHHHHHHCCCC-EEEEEC
T ss_conf             998289999999999999889988999588------------------9---658999999999998668980-896551


Q ss_pred             HHCCHHHHHHHHHCCCEEE-CCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf             3109766688984592162-6898999872189988776642244332433345579998732003301
Q gi|254780268|r   85 LSENAKFAEILEDHHIKFI-GPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFP  152 (443)
Q Consensus        85 LsEn~~fa~~~e~~Gi~fI-GPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyP  152 (443)
                      . -+.+-++.+.++|-.|+ -|..       |... -+.+.+.|+|.+||.  .++.|+..+- +.|+.
T Consensus        79 V-l~~~~~~~a~~aGA~FiVSP~~-------~~~v-~~~~~~~~~~~iPGv--~TptEi~~A~-~~G~~  135 (223)
T PRK07114         79 I-VDAATAALYIQLGANFVVGPLF-------NEDI-AKVCNRRKIPYSPGC--GSVSEIGFAE-ELGCE  135 (223)
T ss_pred             C-CCHHHHHHHHHCCCCEEECCCC-------CHHH-HHHHHHCCCCCCCCC--CCHHHHHHHH-HCCCC
T ss_conf             8-8999999999859989999999-------9999-999998399753731--9999999999-87999


No 246
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=63.12  E-value=12  Score=17.88  Aligned_cols=34  Identities=18%  Similarity=0.199  Sum_probs=23.2

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             21688875066899999875432125899816884
Q gi|254780268|r  164 RGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       164 ~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      |-...+.+.+++.+.+++|.+.+... ..++|+++
T Consensus       130 k~~~~v~~~~~~~~~~~~A~~~A~~~-r~GPV~l~  163 (562)
T PRK06048        130 KHNYLVQDAKDLPRIVKEAFHIASTG-RPGPVLID  163 (562)
T ss_pred             CCEEEECCHHHHHHHHHHHHHHHHHC-CCCCEEEE
T ss_conf             46068489999999999999999648-99767997


No 247
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=62.84  E-value=12  Score=17.84  Aligned_cols=32  Identities=19%  Similarity=0.420  Sum_probs=28.4

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             06866447099999999888809659998585
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAVHST   34 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v~s~   34 (443)
                      |||.|++-|.-.+=.+|+|.|.|++.++.-..
T Consensus         2 KrVAIIGAG~SGL~a~K~lle~G~~~~~FE~~   33 (532)
T pfam00743         2 KKVAVIGAGVSGLSSIKCCLEEGLEPTCFERS   33 (532)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             87999897299999999998779982999779


No 248
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR).  Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=62.48  E-value=12  Score=17.80  Aligned_cols=31  Identities=35%  Similarity=0.434  Sum_probs=13.5

Q ss_pred             CEEECCCHHHHHHHHCHHHHHHHHHHCCCCC
Q ss_conf             2162689899987218998877664224433
Q gi|254780268|r  100 IKFIGPSSEHIKIMGDKITAKKTAQQLGIPV  130 (443)
Q Consensus       100 i~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~  130 (443)
                      +++|||..-.....+|=...|+++++.|+++
T Consensus       165 vNiig~~~~g~~~~gD~~eikrll~~~Gi~v  195 (430)
T cd01981         165 VNLIGPSSLGFHNRHDCRELKRLLHTLGIEV  195 (430)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf             6998247677777568999999999839918


No 249
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=62.37  E-value=11  Score=18.12  Aligned_cols=34  Identities=21%  Similarity=0.177  Sum_probs=23.1

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             21688875066899999875432125899816884
Q gi|254780268|r  164 RGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       164 ~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      |-...+.+++++.+.+++|.+.|.+. .-++|+|+
T Consensus       127 k~~~~v~~~~~i~~~l~~A~~~A~~~-rpGPV~i~  160 (574)
T PRK06882        127 KHSFIVKKAEDIPSTIKKAFYIASTG-RPGPVVID  160 (574)
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHCC-CCCCEEEE
T ss_conf             04468489999999999999998638-99877998


No 250
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=62.32  E-value=12  Score=17.78  Aligned_cols=141  Identities=21%  Similarity=0.251  Sum_probs=81.8

Q ss_pred             CCEEEEEECCCHHHHH-HHHHHHHCC--CEEEEECCC-HHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCC
Q ss_conf             9706866447099999-999888809--659998585-577187767585799918998530006989999999870998
Q gi|254780268|r    1 MISKILIANRGEIALR-ILRACKELG--IPTVAVHST-ADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGAD   76 (443)
Q Consensus         1 m~~~iLianrGeia~r-iira~~elG--i~tv~v~s~-~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~d   76 (443)
                      |.-|+.|.+-|-|+-+ .+++++.++  .+.+++++. +++ +.  ..|. .|.+.     .+|.|.+++++   ...+|
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~-a~--~~a~-~~~~~-----~~~~~~~~ll~---~~~iD   69 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPER-AE--AFAE-EFGIA-----KAYTDLEELLA---DPDID   69 (342)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHH-HH--HHHH-HCCCC-----CCCCCHHHHHC---CCCCC
T ss_conf             93279998987678888899997388746999996499899-99--9999-81997-----45299999945---99998


Q ss_pred             EEE---CCCCHHHCCHHHHHHHHHCCCEEEC--CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC---CCHHHHHHHHH-
Q ss_conf             994---5853131097666889845921626--89899987218998877664224433243334---55799987320-
Q gi|254780268|r   77 AIH---PGYGFLSENAKFAEILEDHHIKFIG--PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE---VYPHTAMPIAK-  147 (443)
Q Consensus        77 aih---PGyGfLsEn~~fa~~~e~~Gi~fIG--Ps~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~---~~~~ea~~~a~-  147 (443)
                      +|.   |-+    -..+.+...-++|...+-  |-..+++.+   ....+++++.|+...-+...   +....+++..+ 
T Consensus        70 ~V~Iatp~~----~H~~~a~~AL~aGkhVl~EKPla~t~~ea---~~l~~~a~~~g~~l~v~~~~Rf~p~~~~~k~li~~  142 (342)
T COG0673          70 AVYIATPNA----LHAELALAALEAGKHVLCEKPLALTLEEA---EELVELARKAGVKLMVGFNRRFDPAVQALKELIDS  142 (342)
T ss_pred             EEEEECCCH----HHHHHHHHHHHCCCEEEEECCCCCCHHHH---HHHHHHHHHCCCEEEEEEHHHCCHHHHHHHHHHHC
T ss_conf             899969806----77999999997799699928998999999---99999999759949998846549899999999865


Q ss_pred             -CCCCHHHHHCCCC
Q ss_conf             -0330122000234
Q gi|254780268|r  148 -EIGFPVLVKASAG  160 (443)
Q Consensus       148 -~iGyPviiKp~~g  160 (443)
                       ++|-+..++..+.
T Consensus       143 g~iG~i~~~~~~~~  156 (342)
T COG0673         143 GALGEVVSVQASFS  156 (342)
T ss_pred             CCCCCEEEEEEEEC
T ss_conf             98741599999711


No 251
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=61.67  E-value=13  Score=17.70  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=29.4

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEECC-CHHH
Q ss_conf             0686644709999999988880965999858-5577
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAVHS-TADS   37 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v~s-~~D~   37 (443)
                      |++||.+-|-.|.-++-++.++|++.|.|++ +.++
T Consensus        20 k~vlIlGaGGaarai~~aL~~~g~~~I~i~nR~~~r   55 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEK   55 (155)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf             999998675899999999997199822886089999


No 252
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.53  E-value=13  Score=17.68  Aligned_cols=131  Identities=16%  Similarity=0.154  Sum_probs=73.0

Q ss_pred             EEEEE-ECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf             06866-44709999999988880965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r    3 SKILI-ANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG   81 (443)
Q Consensus         3 ~~iLi-anrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG   81 (443)
                      .+|+| |..=++--.|.|.+-++|++++.|.+-+=..+ .-..-...+.-.+....+.|     |++.|+.  -|-|-- 
T Consensus         2 ~~I~VDADACPVk~~i~r~A~r~~~~v~~Van~~~~~~-~~~~i~~v~V~~g~DaaD~~-----Iv~~a~~--gDlVVT-   72 (150)
T COG1671           2 MTIWVDADACPVKDEIYRVAERMGLKVTFVANFPHRVP-PSPEIRTVVVDAGFDAADDW-----IVNLAEK--GDLVVT-   72 (150)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHCCEEEEEECCCCCCC-CCCCEEEEEECCCCCHHHHH-----HHHHCCC--CCEEEE-
T ss_conf             56998078785189999999996975999917875689-99853689955773328899-----9983778--998997-


Q ss_pred             CCHHHCCHHHHHHHHHCCCEEECCC-----HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             5313109766688984592162689-----899987218998877664224433243334557999873200
Q gi|254780268|r   82 YGFLSENAKFAEILEDHHIKFIGPS-----SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKE  148 (443)
Q Consensus        82 yGfLsEn~~fa~~~e~~Gi~fIGPs-----~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~  148 (443)
                           -+--||..+-+.|...++|+     ++.|..+-+.-.+..-+++.|..+ .|-...+..+...|++.
T Consensus        73 -----~Di~LA~~ll~kg~~v~~prGr~y~~~nI~~~L~~R~~~~~lR~~G~~~-~gp~~~~~rDr~~F~~~  138 (150)
T COG1671          73 -----ADIPLASLLLDKGAAVLNPRGRLYTEENIGERLAMRDFMAKLRRQGKKT-GGPAAFSSRDRSRFANA  138 (150)
T ss_pred             -----CCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHH
T ss_conf             -----7647899999669778899986567767999998788889999845536-89876576789999999


No 253
>PRK06857 consensus
Probab=61.32  E-value=13  Score=17.66  Aligned_cols=118  Identities=23%  Similarity=0.396  Sum_probs=68.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEC-CCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf             8664470999999998888096599985-855771877675857999189985300069899999998709989945853
Q gi|254780268|r    5 ILIANRGEIALRILRACKELGIPTVAVH-STADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG   83 (443)
Q Consensus         5 iLianrGeia~riira~~elGi~tv~v~-s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyG   83 (443)
                      |+-...-+-+.++++++.+-|++.+=|- +.+                          +.-..|+..+++..|.+ -|-|
T Consensus        17 Vir~~~~~~a~~~~~al~~gGi~~iEiTlrt~--------------------------~a~~~I~~l~~~~p~~~-vGaG   69 (209)
T PRK06857         17 VIAIDDAEDILPLAKVLAENGLPVAEITFRSA--------------------------AAAEAIRLLREAYPDML-IGAG   69 (209)
T ss_pred             EEECCCHHHHHHHHHHHHHCCCCEEEEECCCC--------------------------CHHHHHHHHHHHCCCCE-EEEE
T ss_conf             99759999999999999987998899958993--------------------------29999999997589948-9999


Q ss_pred             HHHCCHHHHHHHHHCCCEEE-CCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHH-HHCCC
Q ss_conf             13109766688984592162-689--899987218998877664224433243334557999873200330122-00023
Q gi|254780268|r   84 FLSENAKFAEILEDHHIKFI-GPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVL-VKASA  159 (443)
Q Consensus        84 fLsEn~~fa~~~e~~Gi~fI-GPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPvi-iKp~~  159 (443)
                      =. -+.+-++.+.++|..|+ -|.  ++.+          +.+.+.++|.+||.  .++.|+..+. +.|+.++ +=|+.
T Consensus        70 TV-~~~e~~~~a~~aGA~FiVSP~~~~~v~----------~~a~~~~i~~iPGv--~TpsEi~~A~-~~G~~~vKlFPA~  135 (209)
T PRK06857         70 TV-LTPEQVDAAKEAGADFIVSPGFNPNTV----------KYCQQLNIPIVPGV--NNPSLVEQAL-EMGLTTLKFFPAE  135 (209)
T ss_pred             EC-CCHHHHHHHHHCCCCEEECCCCCHHHH----------HHHHHCCCCEECCC--CCHHHHHHHH-HCCCCEEEECCCC
T ss_conf             37-679999999983999999089999999----------99997499654787--9999999999-8799989978662


Q ss_pred             CCCC
Q ss_conf             4578
Q gi|254780268|r  160 GGGG  163 (443)
Q Consensus       160 gGGG  163 (443)
                      ..||
T Consensus       136 ~~gG  139 (209)
T PRK06857        136 ASGG  139 (209)
T ss_pred             CCCC
T ss_conf             1266


No 254
>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.
Probab=61.26  E-value=13  Score=17.65  Aligned_cols=53  Identities=17%  Similarity=0.339  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEEE--EECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf             999999999999886515434102458--97288349982276543320167886
Q gi|254780268|r  248 QDRTEIGETCVKAMKKIDYRGAGTIEF--LYENGQFYFIEMNTRLQVEHPVTEAI  300 (443)
Q Consensus       248 ~~~~~i~~~A~~~~~~~g~~g~~tvEF--l~~~~~~yflEvN~Rlqveh~vte~~  300 (443)
                      +...++.+...++....|+.-.--=||  |+.++++|+|.+--=+.++||-.++.
T Consensus       128 ~~~~~~i~~i~~l~~~~gLVHgDlSEyNil~~~~~~~iID~~QaV~~~hp~a~e~  182 (197)
T cd05146         128 NAYYQVLSMMKQLYKECNLVHADLSEYNMLWHDGKVWFIDVSQSVEPTHPHGLEF  182 (197)
T ss_pred             HHHHHHHHHHHHHHHHCCCEECCCCHHHEEECCCCEEEEECCCCCCCCCCCHHHH
T ss_conf             9999999999999998395012410330164279879996774015789788999


No 255
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family; InterPro: IPR006515   These eukaryotic proteins recognize the poly-A of mRNA and consist of four tandem RNA recognition domains at the N terminus followed by a PABP-specific domain at the C terminus. The protein is involved in the transport of mRNAs from the nucleus to the cytoplasm . There are four paralogs in Homo sapiens which are expressed in testis , platelets (Q13310 from SWISSPROT ), broadly expressed (P11940 from SWISSPROT ) and of unknown tissue range (Q15097 from SWISSPROT). ; GO: 0003723 RNA binding.
Probab=61.15  E-value=6.9  Score=19.58  Aligned_cols=109  Identities=24%  Similarity=0.385  Sum_probs=68.7

Q ss_pred             CCCHHH-CCHHHH-HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC-----------CCHHHHHHHHH
Q ss_conf             853131-097666-88984592162689899987218998877664224433243334-----------55799987320
Q gi|254780268|r   81 GYGFLS-ENAKFA-EILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE-----------VYPHTAMPIAK  147 (443)
Q Consensus        81 GyGfLs-En~~fa-~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~-----------~~~~ea~~~a~  147 (443)
                      |||+.+ .|++=| +++|..|.+.|+  .+.||+|.          ..-=|-.+-++.           ++..-+.+...
T Consensus        43 GYgYvNF~n~~DAerAle~~N~~~l~--~k~iRiMw----------s~RDPs~R~SG~GNvFvKNLd~SvDnkaL~d~Fs  110 (860)
T TIGR01628        43 GYGYVNFQNPADAERALETLNFKLLK--GKPIRIMW----------SQRDPSLRRSGVGNVFVKNLDKSVDNKALFDTFS  110 (860)
T ss_pred             HHEEECCCCHHHHHHHHHHHCCCCCC--CEEEEEEE----------ECCCHHHCCCCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf             00132568875799999980884038--76589840----------0488334148971078862887725356898875


Q ss_pred             CCCCHHHHH-CCCCCC-CCEEEEEEECHH--HHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
Q ss_conf             033012200-023457-821688875066--899999875432125899816884434201
Q gi|254780268|r  148 EIGFPVLVK-ASAGGG-GRGMRIAYSEND--LSEAIDQARSEALAAFGNDAVYIEKYLENP  204 (443)
Q Consensus       148 ~iGyPviiK-p~~gGG-G~Gi~vv~~~~e--l~~a~~~a~~ea~~~fgd~~vlvEk~i~~~  204 (443)
                      ++|-=+=+| +.+.-| |||=-.|+-++|  ..+|++..=   -....|..|+|++|+...
T Consensus       111 ~FG~IlSCKVa~dE~GkSrGYgFV~fE~EesA~~AI~k~N---G~~~~d~~v~Vg~f~~~~  168 (860)
T TIGR01628       111 KFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIEKLN---GMLLNDKEVYVGRFIKKK  168 (860)
T ss_pred             HCCCEEEEEEEECCCCCCCCCCEEECCCHHHHHHHHHHHH---HHHHHCCCHHHCCCCCCH
T ss_conf             1586577887762686003541340231788999998860---350110001001365513


No 256
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=61.14  E-value=13  Score=17.64  Aligned_cols=13  Identities=8%  Similarity=0.036  Sum_probs=6.0

Q ss_pred             CCCCCEEEEECCC
Q ss_conf             1244215886689
Q gi|254780268|r  346 PNPGEITYFHAPG  358 (443)
Q Consensus       346 Ps~G~i~~~~~p~  358 (443)
                      ...|++..+-.+.
T Consensus       263 ~~gG~iv~vG~~~  275 (349)
T TIGR03201       263 SHGGTLVVVGYTM  275 (349)
T ss_pred             CCCCEEEEECCCC
T ss_conf             5897999975059


No 257
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=61.08  E-value=13  Score=17.63  Aligned_cols=72  Identities=18%  Similarity=0.452  Sum_probs=44.7

Q ss_pred             CHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf             98999999987099899458531310976668898459216268989998721899887766422443324333455799
Q gi|254780268|r   62 NIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHT  141 (443)
Q Consensus        62 di~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~e  141 (443)
                      +++..+ .|.+.|+|=|           +|+..+..-|++   ||...++..         .+..++|            
T Consensus        10 s~e~a~-~A~~~GAdRI-----------ELCs~L~~GGlT---PS~g~i~~~---------~~~~~iP------------   53 (248)
T PRK11572         10 SMECAL-TAQQNGADRI-----------ELCAAPKEGGLT---PSLGVLKSV---------RERVTIP------------   53 (248)
T ss_pred             CHHHHH-HHHHCCCCEE-----------EECCCCCCCCCC---CCHHHHHHH---------HHHCCCC------------
T ss_conf             999999-9998399989-----------974787668979---999999999---------9866997------------


Q ss_pred             HHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHH
Q ss_conf             9873200330122000234578216888750668999998754
Q gi|254780268|r  142 AMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARS  184 (443)
Q Consensus       142 a~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~  184 (443)
                               -=+||+|..|.      .+++.+|+....+.+..
T Consensus        54 ---------V~vMIRPR~Gd------F~Ys~~E~~~M~~dI~~   81 (248)
T PRK11572         54 ---------VHPIIRPRGGD------FCYSDGEFAAMLEDIRT   81 (248)
T ss_pred             ---------EEEEEEECCCC------CCCCHHHHHHHHHHHHH
T ss_conf             ---------38999426998------86798999999999999


No 258
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit; InterPro: IPR004232   Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site , . The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide , . Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols.    This entry represents the alpha subunit, which is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha.; GO: 0018822 nitrile hydratase activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process.
Probab=61.04  E-value=11  Score=18.19  Aligned_cols=126  Identities=16%  Similarity=0.242  Sum_probs=71.1

Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCH-HHH
Q ss_conf             2365665421135622554034455889999999999999886515434102458972883499822765433201-678
Q gi|254780268|r  220 IHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHP-VTE  298 (443)
Q Consensus       220 v~l~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~-vte  298 (443)
                      ..+++.|-|-|. -=|||  |-| .++++-++.|.+.|..+++.+||.|-       ...++..+|=.+-  |-|= |=.
T Consensus        25 ~s~yene~gP~~-GAkvV--Aka-WVDPefr~~Ll~DaTaAca~~Gy~G~-------Qge~ivalent~~--v~nvvVCt   91 (186)
T TIGR01323        25 TSLYENEVGPEN-GAKVV--AKA-WVDPEFRKLLLKDATAACAELGYAGE-------QGEEIVALENTSG--VHNVVVCT   91 (186)
T ss_pred             HHHHHHCCCCCC-CCEEE--EEC-CCCHHHHHHHHHHHHHHHHHCCCCCC-------CCCEEEEEECCCC--EEEEEEEC
T ss_conf             888753158566-76689--864-66978999886437899997188754-------6134889862896--32788841


Q ss_pred             HHHCC--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC-CCCCEEEEECCCCCCEEE-ECCCCCCCEE
Q ss_conf             86325--6201123222102222211333320124533024566221111-244215886689984467-7760238770
Q gi|254780268|r  299 AITGI--DLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIP-NPGEITYFHAPGGLGIRM-DSASYQGYTV  374 (443)
Q Consensus       299 ~~tgv--dlv~~~~~~a~g~~l~~~~~~i~~~g~aie~Ri~aEdp~~f~P-s~G~i~~~~~p~~~gvRv-Dt~~~~G~~i  374 (443)
                      +++=.  +.        +|-|...      -++...-+|+-++ |++-+- ..|    |..|+.--||| ||+.+.=|-|
T Consensus        92 LCSCypWPV--------LGLPP~W------YK~~eyRaR~Vrd-pRgVL~refG----~~~p~dv~irvWDsSaE~RY~V  152 (186)
T TIGR01323        92 LCSCYPWPV--------LGLPPEW------YKSFEYRARVVRD-PRGVLKREFG----YELPDDVEIRVWDSSAELRYLV  152 (186)
T ss_pred             CCCCCCCCC--------CCCCCCC------CCCCCHHEEEEEC-CCCCHHHHCC----CCCCCCCEEEEEECCHHHHHCC
T ss_conf             137888888--------8878520------0440010001126-7600134527----9997970798841641011000


Q ss_pred             CCC
Q ss_conf             777
Q gi|254780268|r  375 PSY  377 (443)
Q Consensus       375 ~~~  377 (443)
                      =|.
T Consensus       153 lPq  155 (186)
T TIGR01323       153 LPQ  155 (186)
T ss_pred             CCC
T ss_conf             368


No 259
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=60.93  E-value=13  Score=17.61  Aligned_cols=70  Identities=16%  Similarity=0.194  Sum_probs=36.7

Q ss_pred             EEECCCHHHHHHHHCHHHHHHHHH----HCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHH
Q ss_conf             162689899987218998877664----2244332433345579998732003301220002345782168887506689
Q gi|254780268|r  101 KFIGPSSEHIKIMGDKITAKKTAQ----QLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLS  176 (443)
Q Consensus       101 ~fIGPs~~ai~~~gDK~~~k~~a~----~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~  176 (443)
                      .|+||+---=-.+-=|..++-.++    +.|+=|...+-.--.++++.+++-+|.|             +.+|++++||.
T Consensus       180 alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvP-------------v~vv~~~~eL~  246 (404)
T PRK06995        180 ALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP-------------VHAVKDAADLR  246 (404)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCE-------------EEEECCHHHHH
T ss_conf             98668887637589999999999838983799976875478999999999875955-------------99959999999


Q ss_pred             HHHHHHH
Q ss_conf             9999875
Q gi|254780268|r  177 EAIDQAR  183 (443)
Q Consensus       177 ~a~~~a~  183 (443)
                      .+++...
T Consensus       247 ~aL~~l~  253 (404)
T PRK06995        247 LALAELR  253 (404)
T ss_pred             HHHHHHC
T ss_conf             9999708


No 260
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=60.87  E-value=11  Score=18.15  Aligned_cols=19  Identities=21%  Similarity=0.434  Sum_probs=13.1

Q ss_pred             HHHHHHHHCCCCCCEEEEE
Q ss_conf             9998865154341024589
Q gi|254780268|r  257 CVKAMKKIDYRGAGTIEFL  275 (443)
Q Consensus       257 A~~~~~~~g~~g~~tvEFl  275 (443)
                      -.+..+..||.|..++|..
T Consensus       231 il~~L~~~gY~G~vsvEl~  249 (276)
T PRK09856        231 LMRDIIDRGYEGYCTVELV  249 (276)
T ss_pred             HHHHHHHCCCCCEEEEEEC
T ss_conf             9999998599815999972


No 261
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=60.86  E-value=13  Score=17.64  Aligned_cols=57  Identities=19%  Similarity=0.305  Sum_probs=31.0

Q ss_pred             CHHHHHHHHHHCCCCEEEC--CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCC
Q ss_conf             9899999998709989945--85313109766688984592162689899987218998877664224433
Q gi|254780268|r   62 NIQQIVAACEVTGADAIHP--GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPV  130 (443)
Q Consensus        62 di~~ii~~a~~~~~daihP--GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~  130 (443)
                      |...+.+.|++.++..-+=  =.   --|+.+|+.+.+.|+.    ..-++    |=..+ +.+.++|+|+
T Consensus        41 NAr~l~~~A~~~gi~Ly~MtKQ~---GRNP~l~~~l~~~G~~----g~VaV----D~kEA-~~l~~~gl~v   99 (382)
T cd06811          41 NARLLAETAEKYGIELYFMTKQF---GRNPFLARALLEAGIP----GAVAV----DFKEA-RALHEAGLPL   99 (382)
T ss_pred             HHHHHHHHHHHCCCEEEEEEECC---CCCHHHHHHHHHCCCC----CEEEE----EHHHH-HHHHHCCCCC
T ss_conf             99999999997396899996105---8998999999973998----56896----09999-9999859983


No 262
>TIGR01885 Orn_aminotrans ornithine--oxo-acid transaminase; InterPro: IPR010164   Ornithine aminotransferase catalyses the conversion of L-ornithine and a 2-oxo acid to L-glutamate 5-semialdehyde and an L-amino acid. This enzyme is found in low-GC bacteria, where it is responsible for the fourth step in arginine biosynthesis, and in the mitochondrial matrix of eukaryotes, where it controls L-ornithine levels in tissues. In human hereditary ornithine aminotransferase deficiency, the elevated levels of intraocular concentrations of ornithine are responsible for gyrate atrophy, which affects the CNS and peripheral nervous system ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding.
Probab=60.74  E-value=13  Score=17.59  Aligned_cols=100  Identities=21%  Similarity=0.333  Sum_probs=59.9

Q ss_pred             CEEEEEECCCHHHHH-HHHHHHHCCCEEEEEC--------CCHH---HCCCCHHH-CCE-EEEC--CCCCC---------
Q ss_conf             706866447099999-9998888096599985--------8557---71877675-857-9991--89985---------
Q gi|254780268|r    2 ISKILIANRGEIALR-ILRACKELGIPTVAVH--------STAD---SGAMHVRL-ADE-SVCI--GPPSS---------   56 (443)
Q Consensus         2 ~~~iLianrGeia~r-iira~~elGi~tv~v~--------s~~D---~~a~~~~~-ADe-~~~i--~~~~~---------   56 (443)
                      +++||--|-|-=|+. ++|.||++||+.--|-        +.-.   +.-..+.. +|+ -+..  +|-.+         
T Consensus       101 ~~~vL~mNTGaEAvEtA~KLAR~WgY~~K~ip~~kA~ii~~~GNFhGRTlgA~S~Std~e~~k~~FGPflPnvasGhgf~  180 (426)
T TIGR01885       101 YEKVLPMNTGAEAVETALKLARKWGYEVKGIPRNKAKIIAASGNFHGRTLGAVSASTDSETSKKGFGPFLPNVASGHGFR  180 (426)
T ss_pred             CCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCC
T ss_conf             10560456873479999999997441357855762389985388733035443202672120067879677433578521


Q ss_pred             CCHHCCHHHHHHHHHHC-----CCCE------------EECCCCHHHCCHHHHHHHHHCCCEEEC
Q ss_conf             30006989999999870-----9989------------945853131097666889845921626
Q gi|254780268|r   57 KDSYLNIQQIVAACEVT-----GADA------------IHPGYGFLSENAKFAEILEDHHIKFIG  104 (443)
Q Consensus        57 ~~sYldi~~ii~~a~~~-----~~da------------ihPGyGfLsEn~~fa~~~e~~Gi~fIG  104 (443)
                      .-.|=|+|++.++..+.     ++=|            |.|--|||.   ..++.|.+.|+-||=
T Consensus       181 ~iPYgd~EAl~~aL~~P~~~GDnVAA~i~EPIQGEAGvvvPp~gYl~---~V~~LC~~~nVLfI~  242 (426)
T TIGR01885       181 KIPYGDLEALRKALQDPKKTGDNVAAFILEPIQGEAGVVVPPPGYLP---GVRALCKEHNVLFIA  242 (426)
T ss_pred             CCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEECCCCHHH---HHHHHHHHCCCEEEE
T ss_conf             15588878999997275778886899995040354436848963578---999986551872898


No 263
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=60.57  E-value=13  Score=17.57  Aligned_cols=17  Identities=18%  Similarity=0.317  Sum_probs=10.8

Q ss_pred             EEECHHHHHHHHHHHHH
Q ss_conf             87506689999987543
Q gi|254780268|r  169 AYSENDLSEAIDQARSE  185 (443)
Q Consensus       169 v~~~~el~~a~~~a~~e  185 (443)
                      |.+.++|++..+.|.+.
T Consensus       192 V~s~eel~~i~~~a~~~  208 (409)
T PRK07590        192 VATKEQLKAWVDYAKAN  208 (409)
T ss_pred             CCCHHHHHHHHHHHHHC
T ss_conf             57999999999999874


No 264
>TIGR00789 flhB_rel FlhB domain protein; InterPro: IPR004683 This group describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set..
Probab=60.29  E-value=9  Score=18.74  Aligned_cols=57  Identities=26%  Similarity=0.439  Sum_probs=33.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHH--CCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHH
Q ss_conf             6866447099999999888809659998585577--187767585799918998530006989999999
Q gi|254780268|r    4 KILIANRGEIALRILRACKELGIPTVAVHSTADS--GAMHVRLADESVCIGPPSSKDSYLNIQQIVAAC   70 (443)
Q Consensus         4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~--~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a   70 (443)
                      +|+=-+.||+|-|||+.||+.||-   +..|++-  .-.++.+-|       .-+++-|.-+-+|-...
T Consensus        19 ~V~AsG~GevA~~II~~AK~~gip---i~ed~~L~~~L~~l~l~~-------~IPee~Y~~Va~iFaFl   77 (84)
T TIGR00789        19 KVVASGVGEVAEKIIELAKKHGIP---IKEDEDLVDVLLKLDLDD-------EIPEELYEVVAEIFAFL   77 (84)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHCCCCC-------CCCHHHHHHHHHHHHHH
T ss_conf             577416765788999999763899---765828999874405457-------68857889999999999


No 265
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=60.26  E-value=13  Score=17.53  Aligned_cols=97  Identities=15%  Similarity=0.294  Sum_probs=57.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCH
Q ss_conf             86644709999999988880965999858557718776758579991899853000698999999987099899458531
Q gi|254780268|r    5 ILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGF   84 (443)
Q Consensus         5 iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGf   84 (443)
                      |.|.+-|--.|.+.-++-+||.+|..+-.+.|+...-.  ..-  .||+.. ..      .|   .  ..+||+-     
T Consensus         9 VIViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig~ms--CNP--siGGi~-KG------~l---v--rEidaLg-----   67 (621)
T PRK05192          9 VIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMS--CNP--AIGGIA-KG------HL---V--REIDALG-----   67 (621)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEE--CCC--CCCCCC-HH------HH---H--HHHHHCC-----
T ss_conf             89989757999999999967996799965813115860--452--036721-65------76---6--6877536-----


Q ss_pred             HHCCHHHHHHHHHCCCEE------ECCCHHHHHHHHCHHHHHHHHHHC
Q ss_conf             310976668898459216------268989998721899887766422
Q gi|254780268|r   85 LSENAKFAEILEDHHIKF------IGPSSEHIKIMGDKITAKKTAQQL  126 (443)
Q Consensus        85 LsEn~~fa~~~e~~Gi~f------IGPs~~ai~~~gDK~~~k~~a~~~  126 (443)
                          ...++.+.++||.|      =||..++.+.--||...++.+++.
T Consensus        68 ----G~mg~~aD~~~Iq~r~LN~sKGpAv~~~RaQ~Dr~~Y~~~~~~~  111 (621)
T PRK05192         68 ----GEMGKAADKTGIQFRMLNTSKGPAVRAPRAQADRKLYRAAMREI  111 (621)
T ss_pred             ----CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             ----89999998876168761588883006739888599999999999


No 266
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=59.60  E-value=14  Score=17.46  Aligned_cols=12  Identities=33%  Similarity=0.783  Sum_probs=6.4

Q ss_pred             EEECCCCCCEEE
Q ss_conf             886689984467
Q gi|254780268|r  353 YFHAPGGLGIRM  364 (443)
Q Consensus       353 ~~~~p~~~gvRv  364 (443)
                      .+..|.+||.-+
T Consensus       345 ~~~~p~~PGlGv  356 (372)
T COG4948         345 LVHVPDGPGLGV  356 (372)
T ss_pred             EEECCCCCCCCE
T ss_conf             696899991576


No 267
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=59.56  E-value=14  Score=17.45  Aligned_cols=23  Identities=17%  Similarity=0.424  Sum_probs=10.4

Q ss_pred             EEECCCCEEEE--ECCCCCCCCCHH
Q ss_conf             89728834998--227654332016
Q gi|254780268|r  274 FLYENGQFYFI--EMNTRLQVEHPV  296 (443)
Q Consensus       274 Fl~~~~~~yfl--EvN~Rlqveh~v  296 (443)
                      |++.-..+|++  ++++=-.-+||-
T Consensus       327 yVv~l~~~~~ls~~~q~~~~F~HPn  351 (447)
T pfam05185       327 YVVRLHSYYKLSTEVQECWSFSHPN  351 (447)
T ss_pred             EEEEEEEECCCCCCCCCCEEEECCC
T ss_conf             7998211022589873552767889


No 268
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=59.36  E-value=11  Score=18.18  Aligned_cols=20  Identities=20%  Similarity=0.189  Sum_probs=12.8

Q ss_pred             HHHHHHHHHCCCEEEEECCC
Q ss_conf             99999888809659998585
Q gi|254780268|r   15 LRILRACKELGIPTVAVHST   34 (443)
Q Consensus        15 ~riira~~elGi~tv~v~s~   34 (443)
                      --+++.++++|+++|--..-
T Consensus         7 d~i~~~L~~~Gv~~iFgvpG   26 (521)
T PRK07092          7 DATIDLLRRFGITTVFGNPG   26 (521)
T ss_pred             HHHHHHHHHCCCCEEEECCC
T ss_conf             99999999879999998887


No 269
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=59.19  E-value=14  Score=17.41  Aligned_cols=118  Identities=15%  Similarity=0.168  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHH
Q ss_conf             99999998888096599985855771877675857999189985300069899999998709989945853131097666
Q gi|254780268|r   13 IALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAKFA   92 (443)
Q Consensus        13 ia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa   92 (443)
                      -..++|+.++++|+..|.+                   -|+.+.  -+-|+..|++.+++.|.....--=|.| =+.+.+
T Consensus        51 e~~~~id~l~~~Gv~~v~~-------------------tGGEPl--lr~D~~ei~~~a~~~G~~~~l~TNG~l-it~~~a  108 (375)
T PRK05301         51 EWIRVLREARALGVLQLHF-------------------SGGEPL--LRKDLEELVAHARRLGLYTNLITSGVG-LTEARL  108 (375)
T ss_pred             HHHHHHHHHHHCCCCEEEE-------------------CCCCCC--CCCCHHHHHHHHHHCCCEEEEEECCCC-CCHHHH
T ss_conf             9999999999869988996-------------------186524--566899999999976975899606745-579999


Q ss_pred             HHHHHCCCEEE-----CCCHHHHHHHHC-H------HHHHHHHHHCCCCCCCCCCC-----CCHHHHHHHHHCCCCH
Q ss_conf             88984592162-----689899987218-9------98877664224433243334-----5579998732003301
Q gi|254780268|r   93 EILEDHHIKFI-----GPSSEHIKIMGD-K------ITAKKTAQQLGIPVVPGSGE-----VYPHTAMPIAKEIGFP  152 (443)
Q Consensus        93 ~~~e~~Gi~fI-----GPs~~ai~~~gD-K------~~~k~~a~~~GVP~~p~~~~-----~~~~ea~~~a~~iGyP  152 (443)
                      +.+.++|+..|     |+.++.=+.+.- |      ..+-+.++++|+|+-=.+..     ...++..+++.++|.+
T Consensus       109 ~~L~~~gl~~v~vSlDg~~~e~hD~~rG~~G~f~~~~~~i~~l~~~Gi~v~i~~ti~r~N~~~l~~i~~la~~lGv~  185 (375)
T PRK05301        109 AALKAAGLDHIQLSFQDSDPELADRIAGTRGAFAQKLEVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGAD  185 (375)
T ss_pred             HHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf             99985099889995677987787776378862999999999999749816999872305688899999999972998


No 270
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=59.15  E-value=14  Score=17.41  Aligned_cols=77  Identities=25%  Similarity=0.200  Sum_probs=49.7

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCC-----CH-HHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCE
Q ss_conf             6866447099999999888809659998585577187-----76-75857999189985300069899999998709989
Q gi|254780268|r    4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAM-----HV-RLADESVCIGPPSSKDSYLNIQQIVAACEVTGADA   77 (443)
Q Consensus         4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~-----~~-~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~da   77 (443)
                      |+.|-.--.+.++.++++-+.|++.++|+|.||.-..     .+ .+|-+ ..|+- -.+++ ++-+..++..++.++|.
T Consensus         2 kavvfaYh~iG~~~L~aLleaG~eV~aVvThpD~Pgek~~~~sVk~~A~e-~gIPV-~qP~~-i~~pe~ie~L~~l~PDl   78 (660)
T PRK08125          2 KAVVFAYHDIGCVGIEALLEAGYEIAAVFTHTDNPGENTFFGSVARLAAE-LGIPV-YAPED-VNHPLWVERIAELAPDI   78 (660)
T ss_pred             EEEEEEECHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHH-CCCCE-ECCCC-CCCHHHHHHHHHCCCCE
T ss_conf             38999602676999999997899169998679999877688849999997-49967-64788-99889999998449999


Q ss_pred             EE-CCCC
Q ss_conf             94-5853
Q gi|254780268|r   78 IH-PGYG   83 (443)
Q Consensus        78 ih-PGyG   83 (443)
                      +. -+||
T Consensus        79 ivv~aYg   85 (660)
T PRK08125         79 IFSFYYR   85 (660)
T ss_pred             EEEEHHH
T ss_conf             9997474


No 271
>TIGR00874 talAB transaldolase; InterPro: IPR004730   Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated  in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.   Transaldolase is evolutionary related  to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0004801 transaldolase activity, 0006098 pentose-phosphate shunt, 0005737 cytoplasm.
Probab=58.87  E-value=12  Score=17.86  Aligned_cols=60  Identities=20%  Similarity=0.277  Sum_probs=30.1

Q ss_pred             CCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCH---HHHHHHHCHHHHHHHHHHCC---CCC
Q ss_conf             300069899999998709989945853131097666889845921626898---99987218998877664224---433
Q gi|254780268|r   57 KDSYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSS---EHIKIMGDKITAKKTAQQLG---IPV  130 (443)
Q Consensus        57 ~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~---~ai~~~gDK~~~k~~a~~~G---VP~  130 (443)
                      .+|..|.--|+.+|+...-.             .|...--..|..==+...   +.+..+-||+.-     ..|   +..
T Consensus        29 qDaTTNPSLIL~aA~~p~Y~-------------~lid~Av~~gk~~~~~~~~~~~~~~~a~Dkl~V-----~fG~eILK~   90 (324)
T TIGR00874        29 QDATTNPSLILAAAQLPKYQ-------------ELIDEAVAWGKKQGKDDASIKQQVENALDKLAV-----NFGLEILKI   90 (324)
T ss_pred             CCCCCCHHHHHHHHCCHHHH-------------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_conf             98644738999872572579-------------999999999986278513799999999989999-----987788611


Q ss_pred             CCCC
Q ss_conf             2433
Q gi|254780268|r  131 VPGS  134 (443)
Q Consensus       131 ~p~~  134 (443)
                      +||.
T Consensus        91 vPGR   94 (324)
T TIGR00874        91 VPGR   94 (324)
T ss_pred             CCCC
T ss_conf             7993


No 272
>PRK04527 argininosuccinate synthase; Provisional
Probab=58.85  E-value=14  Score=17.37  Aligned_cols=32  Identities=19%  Similarity=0.224  Sum_probs=20.4

Q ss_pred             EEEEEECCCHHHH-HHHHHHHHCCCEEEEECCC
Q ss_conf             0686644709999-9999888809659998585
Q gi|254780268|r    3 SKILIANRGEIAL-RILRACKELGIPTVAVHST   34 (443)
Q Consensus         3 ~~iLianrGeia~-riira~~elGi~tv~v~s~   34 (443)
                      |||..|=.|=.-. =+++=++|.|++.|++..|
T Consensus         4 kkVvLAySGGLDTSv~l~wL~e~g~~Vi~~~ad   36 (397)
T PRK04527          4 KDIVLAFSGGLDTSFCIPYLQERGYAVHTVFAD   36 (397)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             759999089728999999998759947999997


No 273
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=58.75  E-value=1.8  Score=23.80  Aligned_cols=56  Identities=27%  Similarity=0.317  Sum_probs=34.0

Q ss_pred             CCEEEECC--CCCCCEECCCCCCC----EEEEEEECCCH-HHHHHHHHHHHH-HCEE-CCCCCCH
Q ss_conf             84467776--02387707776843----38999955998-999999998765-4088-2637788
Q gi|254780268|r  360 LGIRMDSA--SYQGYTVPSYYDSL----IAKLIVHGKNR-KECMMRLNRALN-EIII-DGIKTTI  415 (443)
Q Consensus       360 ~gvRvDt~--~~~G~~i~~~yDsm----laKiI~~g~~R-~~Ai~~l~~aL~-~~~I-~Gv~TN~  415 (443)
                      .|||+|||  ++.+..+-..||.+    ..|.|+.+.+- ++.+..+.+... ...+ -||-||+
T Consensus       277 ~GiR~DSGD~~~~~~k~~~~~~~~g~dp~~k~iv~Sd~Lde~~i~~L~~~~~~~i~~sfGIGT~L  341 (400)
T PRK05321        277 DGLRHDSGDPFEWGEKAIAHYEKLGIDPRTKTLVFSDGLDLDKALELYRHFRGRIRLSFGIGTNL  341 (400)
T ss_pred             CCEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEECCCCC
T ss_conf             83344887878999999999997699966647998699999999999998627876457547551


No 274
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=58.58  E-value=14  Score=17.34  Aligned_cols=16  Identities=13%  Similarity=0.088  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHCCCCEE
Q ss_conf             8999999987099899
Q gi|254780268|r   63 IQQIVAACEVTGADAI   78 (443)
Q Consensus        63 i~~ii~~a~~~~~dai   78 (443)
                      -+++-++=.+.|.|||
T Consensus        12 ~EAl~~vk~eLG~DAV   27 (432)
T PRK12724         12 QDCLMEMKMKYGSEAT   27 (432)
T ss_pred             HHHHHHHHHHHCCCEE
T ss_conf             9999999999789929


No 275
>pfam01163 RIO1 RIO1 family. This is a family of atypical serine kinases which are found in archaea, bacteria and eukaryotes. Activity of Rio1 is vital in Saccharomyces cerevisiae for the processing of ribosomal RNA, as well as for proper cell cycle progression and chromosome maintenance. The structure of RIO1 has been determined.
Probab=58.06  E-value=15  Score=17.28  Aligned_cols=55  Identities=13%  Similarity=0.184  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCEEEE--EECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf             9999999999999886515434102458--972883499822765433201678863
Q gi|254780268|r  247 AQDRTEIGETCVKAMKKIDYRGAGTIEF--LYENGQFYFIEMNTRLQVEHPVTEAIT  301 (443)
Q Consensus       247 ~~~~~~i~~~A~~~~~~~g~~g~~tvEF--l~~~~~~yflEvN~Rlqveh~vte~~t  301 (443)
                      ++...++.+.-.++....|++-.--=||  |+.++++|+|.+--=+..+||-+++.-
T Consensus       106 ~~~~~~ii~~~~~~y~~~glVHgDLSEyNIL~~~~~~~iID~~QaV~~~hp~A~~~L  162 (186)
T pfam01163       106 EEIYDEIIREMRRLYQEAGLVHGDLSEYNVLVDDDKPVIIDVPQAVETDHPNALEFL  162 (186)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEECCCHHHHEEEECCCEEEEECCCCCCCCCCCHHHHH
T ss_conf             999999999999999966932136206550643896799956752258997889999


No 276
>TIGR02049 gshA_ferroox glutamate--cysteine ligase; InterPro: IPR011718   This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria . It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase..
Probab=58.02  E-value=4.8  Score=20.70  Aligned_cols=171  Identities=17%  Similarity=0.165  Sum_probs=84.0

Q ss_pred             HHHHHHHHCCCEE-EEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHC----CHH
Q ss_conf             9999888809659-99858557718776758579991899853000698999999987099899458531310----976
Q gi|254780268|r   16 RILRACKELGIPT-VAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSE----NAK   90 (443)
Q Consensus        16 riira~~elGi~t-v~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsE----n~~   90 (443)
                      |+-+-++.-|+++ |..-.+.+++.+....+++...+-           +-|   +|----|..|---||-..    |-+
T Consensus        99 ~l~~iL~~AG~evR~GsL~~ev~ePT~~~~~~g~~~~~-----------epL---~riGT~Drrl~~~GF~p~~ilLNnD  164 (436)
T TIGR02049        99 RLEEILRLAGLEVRLGSLYNEVKEPTELDLPYGTKLLL-----------EPL---LRIGTKDRRLTTDGFDPCVILLNND  164 (436)
T ss_pred             HHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEE-----------CCC---CCCCCCCCEECCCCCCCCEEEECCC
T ss_conf             99999986584046414542456874304478887876-----------243---2115677600146777426884263


Q ss_pred             H----HHHHHHCC-CEEECCCHHHH----HH----HHCHHHHHHHHHHCCCCCCCCCCC--------------CCHHHHH
Q ss_conf             6----68898459-21626898999----87----218998877664224433243334--------------5579998
Q gi|254780268|r   91 F----AEILEDHH-IKFIGPSSEHI----KI----MGDKITAKKTAQQLGIPVVPGSGE--------------VYPHTAM  143 (443)
Q Consensus        91 f----a~~~e~~G-i~fIGPs~~ai----~~----~gDK~~~k~~a~~~GVP~~p~~~~--------------~~~~ea~  143 (443)
                      +    ...++.-. =.++ |++.+=    +.    .-=...++++|+..||-  ||...              ...+.+.
T Consensus       165 Ls~giPdiL~~~~eQ~il-Ppl~~GW~~RrK~~hF~~Y~~vA~efa~~i~ID--PWli~p~f~~c~G~DF~~~~g~~~la  241 (436)
T TIGR02049       165 LSAGIPDILKGIKEQDIL-PPLHAGWRSRRKSNHFEAYQEVASEFAKLIGID--PWLINPYFEKCDGIDFDDREGEDALA  241 (436)
T ss_pred             CCCCCCHHHCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCCCCCHHHCCCCCCCCCCCCHHHHH
T ss_conf             447876677577526215-875356544411267899999999986441778--44212000010663356103536899


Q ss_pred             HHHHCC--------------CCH-HHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHH---HHCCCCCCCEEEEEEEEE
Q ss_conf             732003--------------301-220002345782168887506689999987543---212589981688443420
Q gi|254780268|r  144 PIAKEI--------------GFP-VLVKASAGGGGRGMRIAYSENDLSEAIDQARSE---ALAAFGNDAVYIEKYLEN  203 (443)
Q Consensus       144 ~~a~~i--------------GyP-viiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~e---a~~~fgd~~vlvEk~i~~  203 (443)
                      ..++++              -=| |+|||.+|-+|.||--|++.+|+...=+.-++.   .|.-..=+.|+|.+=|..
T Consensus       242 ~~Vd~vL~~~~~kY~eYgI~~~Pyv~vKAdaGTYGMGimTa~sgeE~l~LNrK~R~kM~k~KEGl~vs~ViiQEGV~T  319 (436)
T TIGR02049       242 TAVDQVLSKVQKKYEEYGIHEKPYVIVKADAGTYGMGIMTAKSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYT  319 (436)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEECHHHHHCCCCCCCCCCCEEECCCCCCCEEEECCCCH
T ss_conf             999999999999887558756875899707887455058842637854253000134431125701055678478440


No 277
>PRK13117 consensus
Probab=57.74  E-value=15  Score=17.24  Aligned_cols=218  Identities=13%  Similarity=0.124  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCC-----CCEEECCCC
Q ss_conf             99999999888809659998---5855771877675857999189985300069899999998709-----989945853
Q gi|254780268|r   12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTG-----ADAIHPGYG   83 (443)
Q Consensus        12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~-----~daihPGyG   83 (443)
                      +.-.++++++-+.|...+=+   ||||=..-+-.+.|.+-- |.      +=.+.+.+++.+++-.     +--|.=||-
T Consensus        31 ~~t~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~rA-L~------~G~~~~~~~~~~~~ir~~~~~~pivlM~Y~  103 (268)
T PRK13117         31 ELSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNANLRA-LA------AGVTPAQCFELLAKIRAKYPTIPIGLLLYA  103 (268)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf             99999999999669998997899888565579999999999-84------599699999999885004789877997326


Q ss_pred             --HHHCC-HHHHHHHHHCCCE---EECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHHC-CCCHHHH
Q ss_conf             --13109-7666889845921---62689899987218998877664224433243334557999-873200-3301220
Q gi|254780268|r   84 --FLSEN-AKFAEILEDHHIK---FIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTA-MPIAKE-IGFPVLV  155 (443)
Q Consensus        84 --fLsEn-~~fa~~~e~~Gi~---fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea-~~~a~~-iGyPvii  155 (443)
                        ++.-. ..|++.|.++|+.   +..-+.+-     . ...+..+++.|+..++-....++++. ...++. -||=..+
T Consensus       104 N~i~~~G~e~F~~~~~~aGvdGvIipDLP~eE-----~-~~~~~~~~~~gl~~I~lv~Ptt~~~Ri~~i~~~a~GFiY~v  177 (268)
T PRK13117        104 NLVFANGIDNFYARCAEAGVDSVLIADVPVEE-----S-APFRQAAKKHGIAPIFICPPNADDDTLRQIASLGRGYTYLL  177 (268)
T ss_pred             CHHHHCCHHHHHHHHHHCCCCEEEECCCCHHH-----H-HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             28987179999999997698779857999788-----5-89999998679837998479999999999997479859998


Q ss_pred             HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC--EEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             00234578216888750668999998754321258998168844342011033--1577734787023656654211356
Q gi|254780268|r  156 KASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE--VQIFGDGMGNAIHFGERDCSVQRRN  233 (443)
Q Consensus       156 Kp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE--vqVl~D~~g~~v~l~erdCSiQrr~  233 (443)
                      =-...-|.+    -...+++.+.++..++..     +-++.+-==|..+.|+.  +.-.+||    +.+|-.   +    
T Consensus       178 s~~GvTG~~----~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~v~~~~~~~aDG----vIVGSa---i----  237 (268)
T PRK13117        178 SRAGVTGAE----NKAAAPLNHLVEKLKEYN-----APPPLQGFGISEPEQVKAAIKAGAAG----AISGSA---I----  237 (268)
T ss_pred             ECCCCCCCC----CCCCHHHHHHHHHHHHCC-----CCCEEEEECCCCHHHHHHHHHCCCCE----EEECHH---H----
T ss_conf             367778898----666277999999999647-----99869983789999999998638998----998789---9----


Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             2255403445588999999999999988651
Q gi|254780268|r  234 QKIWEEAHSPVISAQDRTEIGETCVKAMKKI  264 (443)
Q Consensus       234 qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~  264 (443)
                      -|.||+...  =+++...++.+++..+-.++
T Consensus       238 V~~i~~~~~--~~~~~~~~v~~~v~~Lk~a~  266 (268)
T PRK13117        238 VKIIEKNLD--NPEKMLAELAEFVRAMKAAT  266 (268)
T ss_pred             HHHHHHCCC--CHHHHHHHHHHHHHHHHHHH
T ss_conf             999987166--88999999999999999986


No 278
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.67  E-value=15  Score=17.24  Aligned_cols=30  Identities=30%  Similarity=0.375  Sum_probs=15.0

Q ss_pred             HHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHH
Q ss_conf             7999873200330122000234578216888750668999998
Q gi|254780268|r  139 PHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQ  181 (443)
Q Consensus       139 ~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~  181 (443)
                      .+++..+++.+|-|+             .++++++|+.+++..
T Consensus       222 veQLktya~il~vp~-------------~v~~~~~dl~~~l~~  251 (388)
T PRK12723        222 KKQIQTYGDIMGIPV-------------KAIESFKDLKEEITQ  251 (388)
T ss_pred             HHHHHHHHHHHCCCE-------------EEECCHHHHHHHHHH
T ss_conf             999999999978806-------------985788999999997


No 279
>TIGR00694 thiM hydroxyethylthiazole kinase; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium . Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety , . THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole:  2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate  Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate .; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamin biosynthetic process.
Probab=57.49  E-value=15  Score=17.22  Aligned_cols=108  Identities=31%  Similarity=0.435  Sum_probs=50.2

Q ss_pred             HHHHHHHHHCCCCCC---CCCCCCC--HHHHHHHHHCCCCHHHHHC---------CCC-CCCCEEEEEEECH-HHHHHHH
Q ss_conf             988776642244332---4333455--7999873200330122000---------234-5782168887506-6899999
Q gi|254780268|r  117 ITAKKTAQQLGIPVV---PGSGEVY--PHTAMPIAKEIGFPVLVKA---------SAG-GGGRGMRIAYSEN-DLSEAID  180 (443)
Q Consensus       117 ~~~k~~a~~~GVP~~---p~~~~~~--~~ea~~~a~~iGyPviiKp---------~~g-GGG~Gi~vv~~~~-el~~a~~  180 (443)
                      ..+-+.+++.|+|++   =|.....  .+-.++.. +.|++-+||=         --. +..||+   ++.+ --.++++
T Consensus        69 ~~A~~~ane~~~Pv~LDPVG~GAT~~R~~~~~elL-~~g~~a~IkGN~gEI~~L~G~~~~~~rGV---Ds~~~~~~~~~~  144 (282)
T TIGR00694        69 IAAVKSANELGKPVVLDPVGVGATKLRTETALELL-SEGKVAAIKGNAGEILSLAGEEDGKMRGV---DSGSQGAADAIA  144 (282)
T ss_pred             HHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHH-HHCCCCEEECCHHHHHHHHHHHCCCCCCE---ECCCCCCHHHHH
T ss_conf             99999765438956887752574568899999998-51782067457799998846652840110---266422135899


Q ss_pred             HHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCC--CCC-CCCCC-------CCCCCCCCCEEEEECCCCCC
Q ss_conf             8754321258998168844342011033157773478--702-36566-------54211356225540344558
Q gi|254780268|r  181 QARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMG--NAI-HFGER-------DCSVQRRNQKIWEEAHSPVI  245 (443)
Q Consensus       181 ~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g--~~v-~l~er-------dCSiQrr~qkiiEeaPap~l  245 (443)
                      .+++-|...   +-|.   -+.|    |++++.||+-  ... |=|.-       -|-       +||..|-|.|
T Consensus       145 ~~~~~A~~~---~~vv---v~TG----~~D~vsDG~~GG~~~~~nG~~GitaedlPCv-------iiedGPiPll  202 (282)
T TIGR00694       145 AAQEVARKY---GTVV---VVTG----EVDYVSDGRSGGVYVIHNGTEGITAEDLPCV-------IIEDGPIPLL  202 (282)
T ss_pred             HHHHHHHHC---CCEE---EEEC----CEEEEECCCCCCEEEEECCCCCCCCCCCCEE-------EECCCCCCCH
T ss_conf             999988870---9478---9998----7756751886546887568987631336767-------8727884600


No 280
>pfam02548 Pantoate_transf Ketopantoate hydroxymethyltransferase. Ketopantoate hydroxymethyltransferase (EC:2.1.2.11) is the first enzyme in the pantothenate biosynthesis pathway.
Probab=57.22  E-value=15  Score=17.19  Aligned_cols=95  Identities=17%  Similarity=0.293  Sum_probs=37.0

Q ss_pred             HHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHH----HHCCCCCCCCEEEEE-EECHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             77664224433243334557999873200330122----000234578216888-7506689999987543212589981
Q gi|254780268|r  120 KKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVL----VKASAGGGGRGMRIA-YSENDLSEAIDQARSEALAAFGNDA  194 (443)
Q Consensus       120 k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPvi----iKp~~gGGG~Gi~vv-~~~~el~~a~~~a~~ea~~~fgd~~  194 (443)
                      .+++++.|...+.-.......+..++..+-|-|||    +-|-..-.--|.++. ++.+|..+.++.|+..-.+  |---
T Consensus       101 ~rlmke~GadaVKlEgg~~~~~~I~~l~~~GIPV~gHiGL~PQ~~~~~GG~r~qGk~~~ea~~l~~dA~~le~A--Ga~~  178 (261)
T pfam02548       101 ARLMKEAGADAVKLEGGAEMADTIKALVDRGIPVMGHIGLTPQSVNQLGGYKVQGRTEEEAEQLLEDAKALEEA--GAFA  178 (261)
T ss_pred             HHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCE
T ss_conf             99998549998997888535899999998899765342367401123688510259999999999999999846--8748


Q ss_pred             EEEEEEEEE------EEECCEEEEEECCC
Q ss_conf             688443420------11033157773478
Q gi|254780268|r  195 VYIEKYLEN------PRHIEVQIFGDGMG  217 (443)
Q Consensus       195 vlvEk~i~~------~rhiEvqVl~D~~g  217 (443)
                      +++| -++.      .+.+.+-++|=|.|
T Consensus       179 ivlE-~vp~~la~~It~~~~IPtIGIGAG  206 (261)
T pfam02548       179 LVLE-CVPAELAKEITEKLSIPTIGIGAG  206 (261)
T ss_pred             EEEE-CCHHHHHHHHHHCCCCCEEEECCC
T ss_conf             9996-670999999996489989972668


No 281
>pfam00113 Enolase_C Enolase, C-terminal TIM barrel domain.
Probab=57.17  E-value=15  Score=17.18  Aligned_cols=11  Identities=27%  Similarity=0.359  Sum_probs=5.9

Q ss_pred             HHHHHHHHCCC
Q ss_conf             99988651543
Q gi|254780268|r  257 CVKAMKKIDYR  267 (443)
Q Consensus       257 A~~~~~~~g~~  267 (443)
                      +.++++.-|+.
T Consensus       220 ~~~~ak~~g~~  230 (296)
T pfam00113       220 AVKMAKDAGWG  230 (296)
T ss_pred             HHHHHHHCCCE
T ss_conf             99999986964


No 282
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=57.04  E-value=15  Score=17.17  Aligned_cols=37  Identities=14%  Similarity=0.273  Sum_probs=31.1

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCC
Q ss_conf             68664470999999998888096599985855771877
Q gi|254780268|r    4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMH   41 (443)
Q Consensus         4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~   41 (443)
                      ||||++-|-+...+.+.+-.+|+..+.+ -|+|....+
T Consensus         1 kVlivG~GglG~~va~~L~~~Gv~~i~i-vD~D~v~~~   37 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITL-IDFDTVELS   37 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCEEE-EECCCCCCC
T ss_conf             9999997989999999999937971999-978987500


No 283
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=56.77  E-value=15  Score=17.14  Aligned_cols=53  Identities=17%  Similarity=0.308  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEE--EECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf             99999999999886515434102458--972883499822765433201678863
Q gi|254780268|r  249 DRTEIGETCVKAMKKIDYRGAGTIEF--LYENGQFYFIEMNTRLQVEHPVTEAIT  301 (443)
Q Consensus       249 ~~~~i~~~A~~~~~~~g~~g~~tvEF--l~~~~~~yflEvN~Rlqveh~vte~~t  301 (443)
                      ...++.+...++....|+.-.--=||  |++++++|+|.+--=+.++||-.++.-
T Consensus       122 ~~~~il~~~~~ly~~~~lVHGDLSEyNIl~~~~~~~iID~pQaV~~~hpnA~~~L  176 (190)
T cd05147         122 LYLQVIQIMRILYQDCRLVHADLSEYNLLYHDGKLYIIDVSQSVEHDHPHALEFL  176 (190)
T ss_pred             HHHHHHHHHHHHHHHCCCEECCCCHHHEEECCCCEEEEECCCCCCCCCCCHHHHH
T ss_conf             9999999999999974932245315420524899899966641147897889999


No 284
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=56.61  E-value=13  Score=17.60  Aligned_cols=220  Identities=16%  Similarity=0.173  Sum_probs=103.4

Q ss_pred             HHHHHHCCCCEEECC--CCHHHCCHHHHHHHHHCCCEEECCCHHHHH-HHHCHHHHHHHHHHCCCCCCCCCCCCCH-HHH
Q ss_conf             999987099899458--531310976668898459216268989998-7218998877664224433243334557-999
Q gi|254780268|r   67 VAACEVTGADAIHPG--YGFLSENAKFAEILEDHHIKFIGPSSEHIK-IMGDKITAKKTAQQLGIPVVPGSGEVYP-HTA  142 (443)
Q Consensus        67 i~~a~~~~~daihPG--yGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~-~~gDK~~~k~~a~~~GVP~~p~~~~~~~-~ea  142 (443)
                      +..|.-.|+..|+-.  +..++ ...|++.++++|++    . .++. ..|+......++..-+|..+-++..... ...
T Consensus       157 i~pALaaGNtVV~KPs~~tp~~-~~~l~~~~~eaGlP----~-gv~nvv~G~~~~~~~L~~~p~v~~vsFTGS~~~G~~I  230 (478)
T cd07085         157 FPMAIACGNTFVLKPSERVPGA-AMRLAELLQEAGLP----D-GVLNVVHGGKEAVNALLDHPDIKAVSFVGSTPVGEYI  230 (478)
T ss_pred             HHHHHHCCCEEEECCCCCCHHH-HHHHHHHHHHHCCC----C-CEEEEECCCHHHHHHHHCCCCCCEEEEECCCHHHHHH
T ss_conf             9999972992786387317799-99999999982989----0-4288851781689999739885879998983688889


Q ss_pred             HHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCC-----CCCEEEEEEEEEEEECC-----EE--
Q ss_conf             8732003301220002345782168887506689999987543212589-----98168844342011033-----15--
Q gi|254780268|r  143 MPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFG-----NDAVYIEKYLENPRHIE-----VQ--  210 (443)
Q Consensus       143 ~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fg-----d~~vlvEk~i~~~rhiE-----vq--  210 (443)
                      .+.+.+.+    .|-....||+.--+|....|+..+.+.+..-+...-|     -.+++|++-|-. .=+|     ++  
T Consensus       231 ~~~aa~~~----k~v~lELGGknp~IV~~DADld~av~~~~~~~f~naGQ~C~a~~Rv~V~~~i~d-~f~~~l~~~~~~l  305 (478)
T cd07085         231 YERAAANG----KRVQALGGAKNHAVVMPDADLEQTANALVGAAFGAAGQRCMALSVAVAVGDEAD-EWIPKLVERAKKL  305 (478)
T ss_pred             HHHHHCCC----CEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHH-HHHHHHHHHHHHC
T ss_conf             99765128----669983688672799578799999998899999986898888865775002289-9999999999851


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEEC-CCCEE-----
Q ss_conf             777347870236566542113562255403445588999999999999988651543--4102458972-88349-----
Q gi|254780268|r  211 IFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYR--GAGTIEFLYE-NGQFY-----  282 (443)
Q Consensus       211 Vl~D~~g~~v~l~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~--g~~tvEFl~~-~~~~y-----  282 (443)
                      .+||.......+                 .  |.++++.++++.++-.+..+. |-.  --|.....-+ ++.+|     
T Consensus       306 ~vG~p~d~~~~~-----------------G--Pli~~~~~~~v~~~v~~a~~~-Ga~~~~gG~~~~~~~~~~G~f~~Pti  365 (478)
T cd07085         306 KVGAGDDPGADM-----------------G--PVISPAAKERIEGLIESGVEE-GAKLVLDGRGVKVPGYENGNFVGPTI  365 (478)
T ss_pred             CCCCCCCCCCCC-----------------C--CCCCHHHHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCEECCEE
T ss_conf             578988877860-----------------8--867999999999999999986-99999889668888788883557579


Q ss_pred             EEECCCCCCCCCHHHHHHHC-------CCCHHHHHHHHHCCCCCC
Q ss_conf             98227654332016788632-------562011232221022222
Q gi|254780268|r  283 FIEMNTRLQVEHPVTEAITG-------IDLVHEQIYVASENRLSV  320 (443)
Q Consensus       283 flEvN~Rlqveh~vte~~tg-------vdlv~~~~~~a~g~~l~~  320 (443)
                      |..+++...   -+.|++.|       +|=.+.++.+|...+-.+
T Consensus       366 l~~v~~~~~---i~~eE~FGPV~~v~~~~~~dEAi~~aN~t~yGL  407 (478)
T cd07085         366 LDNVTPDMK---IYKEEIFGPVLSIVRVDTLDEAIAIINANPYGN  407 (478)
T ss_pred             EEEECCCCC---CCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCC
T ss_conf             984036775---668445286699997299999999986899986


No 285
>pfam08886 GshA Glutamate-cysteine ligase. This is a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=56.60  E-value=3.4  Score=21.72  Aligned_cols=30  Identities=30%  Similarity=0.355  Sum_probs=20.9

Q ss_pred             HHHHCCCCCCCCEEEEEEECHHHHHHHHHH
Q ss_conf             220002345782168887506689999987
Q gi|254780268|r  153 VLVKASAGGGGRGMRIAYSENDLSEAIDQA  182 (443)
Q Consensus       153 viiKp~~gGGG~Gi~vv~~~~el~~a~~~a  182 (443)
                      |+||+..|-+|.|+-.|++.+|+...=+..
T Consensus       263 V~VKad~GTYGMGIm~v~~~~ei~~Lnrk~  292 (404)
T pfam08886       263 VFVKADAGTYGMGIMTVRSGDEVLALNRKQ  292 (404)
T ss_pred             EEEECCCCCCCCEEEEECCHHHHHHHCHHH
T ss_conf             999678998773379955999998867777


No 286
>PRK13112 consensus
Probab=56.56  E-value=15  Score=17.11  Aligned_cols=219  Identities=12%  Similarity=0.143  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCC---C--CEEECCCC--
Q ss_conf             999999888809659998---5855771877675857999189985300069899999998709---9--89945853--
Q gi|254780268|r   14 ALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTG---A--DAIHPGYG--   83 (443)
Q Consensus        14 a~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~---~--daihPGyG--   83 (443)
                      -.++++++-+.|...+=+   +|||=..-+-.+.|.+.. |.      +=.+++.++++.++-.   .  --|.=||-  
T Consensus        34 s~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rA-L~------~G~~~~~~~~~~~~ir~~~~~~PivlM~Y~N~  106 (279)
T PRK13112         34 SLKIMKALPKAGADIIELGMPFSDPMADGPAIQAAGLRA-LK------AGQTLAKTLYLAREFRKDDDTTPIVLMGYYNP  106 (279)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHHHCCCCCCCEEEEEECHH
T ss_conf             999999998779998997899898666579999999999-97------69968899999998513489988799851249


Q ss_pred             HHHCC-HHHHHHHHHCCCE-EECC--CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHH-CCCCHHHHHC
Q ss_conf             13109-7666889845921-6268--9899987218998877664224433243334557999-87320-0330122000
Q gi|254780268|r   84 FLSEN-AKFAEILEDHHIK-FIGP--SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTA-MPIAK-EIGFPVLVKA  157 (443)
Q Consensus        84 fLsEn-~~fa~~~e~~Gi~-fIGP--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea-~~~a~-~iGyPviiKp  157 (443)
                      +++-. ..|++.|.++|+. +|=|  +.+-      ....+..+++.|+..++.....+.++. ...++ .-||=..+=-
T Consensus       107 i~~~G~e~F~~~~~~aGvdGvIipDLP~eE------~~~~~~~~~~~~i~~I~lvaPtt~~eRi~~i~~~s~GFiY~Vs~  180 (279)
T PRK13112        107 IYIYGVERFLTDAKAAGVDGLIVVDLPPEM------DAELCIPAMKAGINFIRLATPTTDDKRLPKVLANTSGFVYYVSM  180 (279)
T ss_pred             HHHHCHHHHHHHHHHCCCCEEEECCCCHHH------HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf             988479999999997399879846999788------89999999857834699825899899999998527880899835


Q ss_pred             CCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC-EEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             234578216888750668999998754321258998168844342011033-1577734787023656654211356225
Q gi|254780268|r  158 SAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE-VQIFGDGMGNAIHFGERDCSVQRRNQKI  236 (443)
Q Consensus       158 ~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE-vqVl~D~~g~~v~l~erdCSiQrr~qki  236 (443)
                      ...-|.   + -...+++.+.+++.++..     +-++.+-==|..+.|+. +.-.+||    +.+|-.=       -|.
T Consensus       181 ~GvTG~---~-~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~~~~~~~~aDG----vIVGSAi-------Vk~  240 (279)
T PRK13112        181 TGITGS---A-LADTSAVGEAVARIKRHT-----DLPVCVGFGVKTPEQARAIAAHADG----VVVGTAI-------VNA  240 (279)
T ss_pred             CCCCCC---C-CCCHHHHHHHHHHHHHHC-----CCCCEEEECCCCHHHHHHHHCCCCE----EEECHHH-------HHH
T ss_conf             666676---6-456488999999999717-----8987678356999999999725999----9987799-------999


Q ss_pred             EEEC--CCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             5403--4455889999999999999886515
Q gi|254780268|r  237 WEEA--HSPVISAQDRTEIGETCVKAMKKID  265 (443)
Q Consensus       237 iEea--Pap~l~~~~~~~i~~~A~~~~~~~g  265 (443)
                      ||++  ......++..+.+.+.+..+...+.
T Consensus       241 Ie~~~~~~~~~~~~~~~~v~~~~~~l~~g~k  271 (279)
T PRK13112        241 LAGSLDEDGKATADTVAAVADLVAALAEGVR  271 (279)
T ss_pred             HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9854674110045799999999999999999


No 287
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=56.27  E-value=15  Score=17.08  Aligned_cols=132  Identities=20%  Similarity=0.229  Sum_probs=68.0

Q ss_pred             CCHHHHHHHHHHCCCCEEE--CCCCHHHCCHHHHHHHH-HCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCC-CCCCC
Q ss_conf             6989999999870998994--58531310976668898-45921626898999872189988776642244332-43334
Q gi|254780268|r   61 LNIQQIVAACEVTGADAIH--PGYGFLSENAKFAEILE-DHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVV-PGSGE  136 (443)
Q Consensus        61 ldi~~ii~~a~~~~~daih--PGyGfLsEn~~fa~~~e-~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~-p~~~~  136 (443)
                      .=.+.|++.-++.|++-|+  ||=    .+..|-.++. +.+|.||+..-|......==.-+| +-.+.||-.+ .|-..
T Consensus        22 tGae~lv~~L~~~GV~~vFGvpG~----~~l~l~dal~~~~~i~~V~~rhE~~A~~mAdgYaR-~tg~~gv~~~t~GPG~   96 (587)
T PRK06965         22 IGATILMKALADEGVEFIWGYPGG----SVLYIYDELYKQDKIQHVLVRHEQAAVHAADGYAR-ATGKVGVALVTSGPGV   96 (587)
T ss_pred             CHHHHHHHHHHHCCCCEEEECCCC----CHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH-HHCCCEEEEECCCHHH
T ss_conf             599999999998799999979762----25999999862599709804968999999999999-9699889997567049


Q ss_pred             CCHHHHHHHHHCCCCHHHHHCC----CCCC----------------CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             5579998732003301220002----3457----------------8216888750668999998754321258998168
Q gi|254780268|r  137 VYPHTAMPIAKEIGFPVLVKAS----AGGG----------------GRGMRIAYSENDLSEAIDQARSEALAAFGNDAVY  196 (443)
Q Consensus       137 ~~~~ea~~~a~~iGyPviiKp~----~gGG----------------G~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vl  196 (443)
                      .+.-..+.-|..=+-|+++=.-    ...|                .|-...+.+.+++.+.+++|.+.+... ..++|+
T Consensus        97 ~N~~~gia~A~~d~~Pvl~i~G~~~~~~~g~~~~q~~d~~~~~~~~tK~~~~v~~~~~i~~~l~~A~~~A~~~-~~GPV~  175 (587)
T PRK06965         97 TNAVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVGITRPCVKHNFLVKDVRDLAETVKKAFYIARTG-RPGPVL  175 (587)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHC-CCCCEE
T ss_conf             9999999999974998699868897000577643200466531565200476188999999999999998527-996279


Q ss_pred             EE
Q ss_conf             84
Q gi|254780268|r  197 IE  198 (443)
Q Consensus       197 vE  198 (443)
                      |+
T Consensus       176 l~  177 (587)
T PRK06965        176 ID  177 (587)
T ss_pred             EE
T ss_conf             95


No 288
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.19  E-value=16  Score=17.07  Aligned_cols=63  Identities=19%  Similarity=0.336  Sum_probs=44.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEE--ECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE
Q ss_conf             86644709999999988880965999--858557718776758579991899853000698999999987099899
Q gi|254780268|r    5 ILIANRGEIALRILRACKELGIPTVA--VHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI   78 (443)
Q Consensus         5 iLianrGeia~riira~~elGi~tv~--v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai   78 (443)
                      =|||++|-.-+.+..+|+..|+....  +-.+.|..  ....-.+-+.+         -++-.++..-+.+++|-|
T Consensus         8 glIaG~G~LP~~va~~a~~~G~~~~ii~l~~eaD~~--~~~~e~~~~~i---------G~vg~lik~l~~~~v~~v   72 (279)
T COG3494           8 GLIAGNGSLPLEVAENARNQGYAPFIIGLRGEADPE--LKEFEYKEVSI---------GEVGKLIKLLKTEGVDRV   72 (279)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCHH--HHCCCCEEEEH---------HHHHHHHHHHHHCCCCEE
T ss_conf             999559867589999998679982799835756655--52588707757---------879999999998488689


No 289
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component; InterPro: IPR014350   The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) ,  is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars.   The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII).    The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site.    An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , .    According to structural and sequence analyses, the PTS EIIB domain (2.7.1.69 from EC) can be divided in five groups , , :  The PTS EIIB type 1 domain, which is found in the Glucose class of PTS, has an average length of about 80 amino acids. It forms a split alpha/beta sandwich composed of an antiparallel sheet (beta 1 to beta 4) and three alpha helices superimposed onto one side of the sheet. The phosphorylation site (Cys) is located at the end of the first beta strand on a protrusion formed by the edge of beta 1 and the reverse turn between beta 1 and beta 2 . The PTS EIIB type 2 domain, which is found in the Mannitol class of PTS, has an average length of about 100 amino acids. It consists of a four stranded parallel beta sheet flanked by two alpha helices (alpha 1 and 3) on one face and helix alpha 2 on the opposite face, with a characteristic Rossmann fold comprising two right-handed beta-alpha-beta motifs. The phosphorylation site (Cys) is located at the N-terminus of the domain, in the first beta strand.  The PTS EIIB type 3 domain, which is found in the Lactose class of PTS, has an average length of about 100 amino acids. It is composed of a central four-stranded parallel open twisted beta sheet, which is flanked by three alpha helices on the concave side and two on the convex side of the beta sheet. The phosphorylation site (Cys) is located in the C-terminal end of the first beta strand . The PTS EIIB type 4 domain, which is found in the Mannose class of PTS, has an average length of about 160 amino acids. It has a central core of seven parallel beta strands surrounded by a total of six alpha-helices. Three helices cover the front face, one the back face with the remaining two capping the central beta sheet at the top and bottom. The phosphorylation site (His) is located at the suface exposed loop between strand 1 and helix 1 .  The PTS EIIB type 5 domain, which is found in the Sorbitol class of PTS, has an average length of about 190 amino acids. The phosphorylation site (Cys) is located in the N-terminus of the domain.      The EIIB type 3 protein is often found downstream of EIIC type 3. This entry hits fewer proteins than IPR013012 from INTERPRO. .
Probab=56.19  E-value=16  Score=17.07  Aligned_cols=72  Identities=24%  Similarity=0.339  Sum_probs=53.6

Q ss_pred             EEECCCCCCCCHHCCHHHHHHHHHHCCCCEE-EC-CCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHH
Q ss_conf             9991899853000698999999987099899-45-853131097666889845921626898999872189988776642
Q gi|254780268|r   48 SVCIGPPSSKDSYLNIQQIVAACEVTGADAI-HP-GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQ  125 (443)
Q Consensus        48 ~~~i~~~~~~~sYldi~~ii~~a~~~~~dai-hP-GyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~  125 (443)
                      .+.|+.+-...|-| +.++-+.|++.+++.. +- +||-.      .+.+.++.+.++||-.+.     ++...|+...+
T Consensus        49 iLl~CaaGmstsLL-v~~l~k~A~~~~~~~~i~A~~~~~~------~e~~~~~d~VlLaPQ~~~-----~~~~lk~~t~~  116 (142)
T TIGR00853        49 ILLLCAAGMSTSLL-VNKLNKAAKEYGVPVKIAAVSYGAA------MEILDDADVVLLAPQVAY-----MLPDLKKETDK  116 (142)
T ss_pred             EEEEECCCCCHHHH-HHHHHHHHHHCCCCEEEEEECCCHH------HHHHHHHCEEEEHHHHHH-----HHHHHHHHCCC
T ss_conf             68887697354789-9999999984599758884057634------433535043112032675-----57999985135


Q ss_pred             CCCCCC
Q ss_conf             244332
Q gi|254780268|r  126 LGIPVV  131 (443)
Q Consensus       126 ~GVP~~  131 (443)
                      .|||+.
T Consensus       117 ~Gip~~  122 (142)
T TIGR00853       117 KGIPVE  122 (142)
T ss_pred             CCCCEE
T ss_conf             897536


No 290
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=55.79  E-value=16  Score=17.03  Aligned_cols=88  Identities=23%  Similarity=0.252  Sum_probs=44.8

Q ss_pred             CEEEEE-ECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE--
Q ss_conf             706866-44709999999988880965999858557718776758579991899853000698999999987099899--
Q gi|254780268|r    2 ISKILI-ANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI--   78 (443)
Q Consensus         2 ~~~iLi-anrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai--   78 (443)
                      |+|||| ++-+|- ..+.+.+.+  +.++.-++-. ...+.. .. -.+.+|      ...|.+.+.+..+++++++|  
T Consensus         1 m~~IlilgGT~Eg-r~la~~L~~--~~~~~s~ag~-~~~~~~-~~-~~i~~G------~~~~~~~l~~~l~~~~i~~VID   68 (241)
T PRK08057          1 MPRILLLGGTSEA-RALARALAP--DDTVTSLAGR-TLKPAD-LP-GPVRVG------GFGGAEGLAAYLREEGIDLVVD   68 (241)
T ss_pred             CCEEEEEECHHHH-HHHHHHHHC--CCEEEEEEEE-CCCCCC-CC-CCEEEC------CCCCHHHHHHHHHHCCCCEEEE
T ss_conf             9659999670899-999999748--9989998530-255656-88-767988------8899999999999679989998


Q ss_pred             --ECCCCHHHCCHHHHHHHHHCCCEEE
Q ss_conf             --4585313109766688984592162
Q gi|254780268|r   79 --HPGYGFLSENAKFAEILEDHHIKFI  103 (443)
Q Consensus        79 --hPGyGfLsEn~~fa~~~e~~Gi~fI  103 (443)
                        ||==--.|+|+  .++|++.||+++
T Consensus        69 ATHPfA~~is~~a--~~a~~~~~ipyl   93 (241)
T PRK08057         69 ATHPYAAQISANA--AAACRALGIPYL   93 (241)
T ss_pred             CCCCCHHHHHHHH--HHHHHHHCCEEE
T ss_conf             9997089999999--999998697079


No 291
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia.  This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent  nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=55.45  E-value=16  Score=16.99  Aligned_cols=16  Identities=31%  Similarity=0.451  Sum_probs=6.8

Q ss_pred             CHHHHHHHHHHCCCCC
Q ss_conf             8998877664224433
Q gi|254780268|r  115 DKITAKKTAQQLGIPV  130 (443)
Q Consensus       115 DK~~~k~~a~~~GVP~  130 (443)
                      |-...|+++++.|+.+
T Consensus       167 d~~ei~~ll~~~Gi~v  182 (399)
T cd00316         167 DLRELKRLLEEMGIRV  182 (399)
T ss_pred             CHHHHHHHHHHCCCCE
T ss_conf             0999999999869905


No 292
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=55.44  E-value=16  Score=16.99  Aligned_cols=35  Identities=23%  Similarity=0.505  Sum_probs=20.9

Q ss_pred             HHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf             75857999189985300069899999998709989945
Q gi|254780268|r   43 RLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP   80 (443)
Q Consensus        43 ~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP   80 (443)
                      +..|-.+.+.....+   -|+-+|+..|.-.|++.||-
T Consensus        16 Rq~dL~vvLD~V~dP---~NlGAIiRTadA~Gv~~V~~   50 (229)
T PRK11081         16 RQPDLTVCLEQVHKP---HNVSAIIRTADAVGVHEVHA   50 (229)
T ss_pred             CCCCEEEEECCCCCC---CHHHHHHHHHHHHCCCEEEE
T ss_conf             589869997688998---50999999999838974689


No 293
>PRK08611 pyruvate oxidase; Provisional
Probab=55.14  E-value=16  Score=16.96  Aligned_cols=44  Identities=11%  Similarity=0.148  Sum_probs=27.2

Q ss_pred             CCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             33012200023457821688875066899999875432125899816884
Q gi|254780268|r  149 IGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       149 iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      +...-+.+|.    .+=...+.+++++.+.+++|.+.|.+  +.++|+++
T Consensus       117 ~d~~~l~~~v----tk~~~~v~~~~~i~~~l~~A~~~A~~--~rGPv~l~  160 (576)
T PRK08611        117 VNLEKMFEDV----AVYNHQIMSAENLPEIVNEAIRTAYE--KKGVAVLT  160 (576)
T ss_pred             ECHHHHHCCC----CEEEEEECCHHHHHHHHHHHHHHHHC--CCCCEEEE
T ss_conf             2377750550----02687838988869999999999863--89954895


No 294
>pfam04842 DUF639 Plant protein of unknown function (DUF639). Plant protein of unknown function.
Probab=55.05  E-value=9.7  Score=18.52  Aligned_cols=31  Identities=19%  Similarity=0.464  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHCEECCCCCCHHHHHHHHC
Q ss_conf             9999999987654088263778889998968
Q gi|254780268|r  393 KECMMRLNRALNEIIIDGIKTTIPLFQKLIK  423 (443)
Q Consensus       393 ~~Ai~~l~~aL~~~~I~Gv~TN~~~l~~il~  423 (443)
                      .+-+.+++...+..+++||.||+..++++|-
T Consensus       467 ~k~ve~AqATid~vKveGI~tNvavmkELl~  497 (682)
T pfam04842       467 YKVVEKAQATIDAVKIEGIDTNVAVMKELIL  497 (682)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             4235698775877632787767999999988


No 295
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=54.94  E-value=16  Score=16.93  Aligned_cols=48  Identities=21%  Similarity=0.221  Sum_probs=28.9

Q ss_pred             HHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCE-EEEEEE
Q ss_conf             99987320033012200023457821688875066899999875432125899816-884434
Q gi|254780268|r  140 HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAV-YIEKYL  201 (443)
Q Consensus       140 ~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~v-lvEk~i  201 (443)
                      .+++..+.+.|-||.||--       +  --+.++...+.+...+     +|+.++ +.|+=+
T Consensus       124 tdLl~a~a~t~kpV~iKkg-------~--~~s~~~~~~a~eki~~-----~Gn~~v~l~ERG~  172 (266)
T PRK13398        124 FELLKEVGKTKKPILLKRG-------M--SATIEEWLYAAEYIMS-----EGNENVVLCERGI  172 (266)
T ss_pred             HHHHHHHHHHCCCEEECCC-------C--CCCHHHHHHHHHHHHH-----CCCCCEEEEECCC
T ss_conf             8999999970996673487-------6--6888999999999984-----7998389984252


No 296
>pfam04227 Indigoidine_A Indigoidine synthase A like protein. Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown.
Probab=54.92  E-value=9.1  Score=18.73  Aligned_cols=184  Identities=21%  Similarity=0.271  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHC------HHHHHHHHHHCCCCCCCC-CC
Q ss_conf             89999999870998994585313109766688984592162689899987218------998877664224433243-33
Q gi|254780268|r   63 IQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGD------KITAKKTAQQLGIPVVPG-SG  135 (443)
Q Consensus        63 i~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gD------K~~~k~~a~~~GVP~~p~-~~  135 (443)
                      ...+.++++++|+.--           .   .---.|...+|-+.+.++.+.+      |...|.+.    +-+..+ +.
T Consensus        34 a~~~e~~vr~~GavPA-----------t---iai~~G~~~vGl~~~el~~la~~~~~~~K~S~RDl~----~~~a~~~~G   95 (293)
T pfam04227        34 AREVEQIVRENGAVPA-----------T---IAIIDGRIKVGLSDEELERLAQAGKDVAKVSRRDLP----YVVATGKTG   95 (293)
T ss_pred             HHHHHHHHHHCCCCCE-----------E---EEEECCEEEECCCHHHHHHHHHCCCCCCCCCHHHHH----HHHHCCCCC
T ss_conf             9999999997799621-----------6---899989877469999999997247665435530279----998158765


Q ss_pred             CCCHHHHHHHHHCCCCHHHHHCCCCCCCC--EEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE----E-EEEEEEEC-
Q ss_conf             45579998732003301220002345782--1688875066899999875432125899816884----4-34201103-
Q gi|254780268|r  136 EVYPHTAMPIAKEIGFPVLVKASAGGGGR--GMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE----K-YLENPRHI-  207 (443)
Q Consensus       136 ~~~~~ea~~~a~~iGyPviiKp~~gGGG~--Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE----k-~i~~~rhi-  207 (443)
                      ..+..--..+|+..|-+|+.-  .|-||.  |-..  +.|.=.+..+.+         ..+|.|=    | +++-+|-+ 
T Consensus        96 aTTVsaTm~iA~~aGI~VFaT--GGIGGVHrg~~~--t~DiSaDL~eL~---------~tpv~VVcaG~KsILDi~~TlE  162 (293)
T pfam04227        96 ATTVAATMILAHLAGIKVFAT--GGIGGVHRGAEE--SFDISADLTELA---------RTPVAVVCAGAKSILDIPKTLE  162 (293)
T ss_pred             CCHHHHHHHHHHHCCCEEEEE--CCCCCCCCCCCC--CCCCCCCHHHHH---------CCCEEEEECCCHHHHCCHHHHH
T ss_conf             210999999999869808974--674512578645--632143478881---------5975999426076505446899


Q ss_pred             -----CEEEEEECCCCCCCCCCCCCC--CCCCC------------------CE-EEEECCCC---CCCHHHHHHHHHHHH
Q ss_conf             -----315777347870236566542--11356------------------22-55403445---588999999999999
Q gi|254780268|r  208 -----EVQIFGDGMGNAIHFGERDCS--VQRRN------------------QK-IWEEAHSP---VISAQDRTEIGETCV  258 (443)
Q Consensus       208 -----EvqVl~D~~g~~v~l~erdCS--iQrr~------------------qk-iiEeaPap---~l~~~~~~~i~~~A~  258 (443)
                           -|.|++=+.+..-.|+.|+--  +..|-                  +. ++=--|-|   .++.+..+++.+.|+
T Consensus       163 ~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~~~~~~~eiA~i~~~~~~lgl~~g~LianPIP~e~~i~~~~ie~~I~~Al  242 (293)
T pfam04227       163 YLETQGVPVIGYGTDEFPAFYSRDSGFKVPYRLDSAEEIAAIIRARWALGLQGGVLVANPIPEEYAIDREEIEAAIEQAL  242 (293)
T ss_pred             HHHHCCCEEEEECCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHCCCHHHHHHHHHHHH
T ss_conf             99975943897458765642305889988661389999999999999718998359966897254499899999999999


Q ss_pred             HHHHHHCCCCCCEEEEEEC
Q ss_conf             9886515434102458972
Q gi|254780268|r  259 KAMKKIDYRGAGTIEFLYE  277 (443)
Q Consensus       259 ~~~~~~g~~g~~tvEFl~~  277 (443)
                      +-++.-|..|-..-=||++
T Consensus       243 ~ea~~~gI~GK~vTPfLL~  261 (293)
T pfam04227       243 AEAEEQGITGKAVTPFLLA  261 (293)
T ss_pred             HHHHHCCCCCCCCCHHHHH
T ss_conf             9999849967545879999


No 297
>pfam02593 DUF166 Uncharacterized ArCR, COG1810.
Probab=54.90  E-value=16  Score=16.93  Aligned_cols=35  Identities=11%  Similarity=-0.044  Sum_probs=21.4

Q ss_pred             EECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCC
Q ss_conf             64470999999998888096599985855771877
Q gi|254780268|r    7 IANRGEIALRILRACKELGIPTVAVHSTADSGAMH   41 (443)
Q Consensus         7 ianrGeia~riira~~elGi~tv~v~s~~D~~a~~   41 (443)
                      |.-+|.-.-|++.+.+.-.---|.++.-|+.....
T Consensus         2 vi~~G~yGeR~~~~i~~~~~~~v~~~~~pe~l~e~   36 (215)
T pfam02593         2 VLYDGQYGERAVENILNYFDFCVIVLEYPEELPEF   36 (215)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf             14037302899999986489429996177646432


No 298
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=54.69  E-value=16  Score=16.91  Aligned_cols=131  Identities=18%  Similarity=0.179  Sum_probs=65.4

Q ss_pred             CHHHHHHHHHHCCCCEEE--CCCCHHHCCHHHHHHHH-HCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCC-CCCCCC
Q ss_conf             989999999870998994--58531310976668898-45921626898999872189988776642244332-433345
Q gi|254780268|r   62 NIQQIVAACEVTGADAIH--PGYGFLSENAKFAEILE-DHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVV-PGSGEV  137 (443)
Q Consensus        62 di~~ii~~a~~~~~daih--PGyGfLsEn~~fa~~~e-~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~-p~~~~~  137 (443)
                      -.+.+++.-++.|+|-|+  ||=.    +..|-.++. ..+|.||+..-|......==.-+| +-.+.||-.+ .|-...
T Consensus        33 gae~lv~~L~~~GV~~vFGvPG~~----~l~l~dal~~~~~i~~V~~rhE~~A~~mAdgYAR-~tG~~gv~~~t~GPG~~  107 (612)
T PRK07789         33 GAQAVVRSLEELGVDVVFGIPGGA----ILPVYDPLFDSTKLRHVLVRHEQGAGHAAEGYAQ-ATGRVGVCMATSGPGAT  107 (612)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCC----HHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHH-HHCCCEEEEEECCCHHH
T ss_conf             999999999987999999798845----5999999753699649831968999999999999-97899899980681799


Q ss_pred             CHHHHHHHHHCCCCHHHHHC----CCCCC----------------CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             57999873200330122000----23457----------------82168887506689999987543212589981688
Q gi|254780268|r  138 YPHTAMPIAKEIGFPVLVKA----SAGGG----------------GRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYI  197 (443)
Q Consensus       138 ~~~ea~~~a~~iGyPviiKp----~~gGG----------------G~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlv  197 (443)
                      +.-..+.-|..=+-||++=.    ...-|                .|-...+.+++++.+.+++|.+.+.+. .-++|+|
T Consensus       108 Na~~gla~A~~d~~Pvl~I~G~~~~~~~g~~~~qe~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A~~g-rpGPV~i  186 (612)
T PRK07789        108 NLVTPIADANMDSVPVVAITGQVGSGLIGTDAFQEADIVGITMPITKHNFLVTRAEDIPRVIAEAFHIASTG-RPGPVLV  186 (612)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHCC-CCCCEEE
T ss_conf             999999999960998899968787543789987522488764334401232189999999999999999618-9963899


Q ss_pred             E
Q ss_conf             4
Q gi|254780268|r  198 E  198 (443)
Q Consensus       198 E  198 (443)
                      +
T Consensus       187 ~  187 (612)
T PRK07789        187 D  187 (612)
T ss_pred             E
T ss_conf             6


No 299
>PRK08175 aminotransferase; Validated
Probab=54.69  E-value=16  Score=16.91  Aligned_cols=14  Identities=0%  Similarity=0.145  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             89999999987654
Q gi|254780268|r  392 RKECMMRLNRALNE  405 (443)
Q Consensus       392 R~~Ai~~l~~aL~~  405 (443)
                      -++|++|+.++|+.
T Consensus       376 l~eal~Ri~~~~~a  389 (395)
T PRK08175        376 IRQAVRGIKAMFRA  389 (395)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999986


No 300
>pfam11394 DUF2875 Protein of unknown function (DUF2875). This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=54.47  E-value=6.5  Score=19.75  Aligned_cols=24  Identities=13%  Similarity=0.259  Sum_probs=9.6

Q ss_pred             CHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             899887766422443324333455
Q gi|254780268|r  115 DKITAKKTAQQLGIPVVPGSGEVY  138 (443)
Q Consensus       115 DK~~~k~~a~~~GVP~~p~~~~~~  138 (443)
                      +.+...+-...+||-..=|....+
T Consensus        99 ~~I~~~R~~AsLGvTlfLWq~d~n  122 (451)
T pfam11394        99 TDINGGRNQASLGVTLFLWQDDAN  122 (451)
T ss_pred             HHHHCCCCCCCCCEEEEEEEECCC
T ss_conf             776434433443205677640334


No 301
>PRK07328 histidinol-phosphatase; Provisional
Probab=54.40  E-value=17  Score=16.87  Aligned_cols=17  Identities=18%  Similarity=0.280  Sum_probs=8.2

Q ss_pred             CHHHHHHHHHHCCCCEE
Q ss_conf             98999999987099899
Q gi|254780268|r   62 NIQQIVAACEVTGADAI   78 (443)
Q Consensus        62 di~~ii~~a~~~~~dai   78 (443)
                      .++..++.|.+.|.+.|
T Consensus        18 ~~ee~v~~Ai~~Gl~~i   34 (268)
T PRK07328         18 TPEEYVEEARAKGLAEI   34 (268)
T ss_pred             CHHHHHHHHHHCCCCEE
T ss_conf             19999999998799989


No 302
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=54.22  E-value=17  Score=16.86  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=17.8

Q ss_pred             CHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             09999999988880965999858
Q gi|254780268|r   11 GEIALRILRACKELGIPTVAVHS   33 (443)
Q Consensus        11 Geia~riira~~elGi~tv~v~s   33 (443)
                      .++.--+.+.|++.||+.+..++
T Consensus        15 ~~l~~gi~~~~~~~GY~~~i~~~   37 (270)
T cd01545          15 SEIQLGALDACRDTGYQLVIEPC   37 (270)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             99999999999984998999969


No 303
>PRK07695 transcriptional regulator TenI; Provisional
Probab=54.15  E-value=17  Score=16.85  Aligned_cols=17  Identities=18%  Similarity=0.274  Sum_probs=9.7

Q ss_pred             HHHHHHHCCCCEEECCC
Q ss_conf             99999870998994585
Q gi|254780268|r   66 IVAACEVTGADAIHPGY   82 (443)
Q Consensus        66 ii~~a~~~~~daihPGy   82 (443)
                      =+++|...++|+||-|+
T Consensus        65 ~~dlA~~~~adGVHLGq   81 (202)
T PRK07695         65 RVDIALLLNIHRVQLGY   81 (202)
T ss_pred             CHHHHHHCCCCEEEECH
T ss_conf             19999884999892182


No 304
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=53.99  E-value=17  Score=16.83  Aligned_cols=130  Identities=19%  Similarity=0.284  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC-CCCEEE-CCCCHHHCCHHH
Q ss_conf             999999888809659998585577187767585799918998530006989999999870-998994-585313109766
Q gi|254780268|r   14 ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT-GADAIH-PGYGFLSENAKF   91 (443)
Q Consensus        14 a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~-~~daih-PGyGfLsEn~~f   91 (443)
                      -.|+++++.++|++-|=+                   -||.+..  .-|+..+++-.++. +.+-|- --=|.|=  +.+
T Consensus        56 i~~i~~~~~~lGi~kiRl-------------------TGGEPLl--R~di~~li~~l~~~~gi~~v~lTTNG~lL--~~~  112 (334)
T PRK00164         56 IERLVRAFAALGVRKIRL-------------------TGGEPLL--RKDLEDIIARLAALPGIRDLALTTNGYLL--ARR  112 (334)
T ss_pred             HHHHHHHHHHCCCCEEEE-------------------CCCCCCC--CCCHHHHHHHHHHCCCCCCEEEECCHHHH--HHH
T ss_conf             999999999709627986-------------------0788432--35789999998632797517884448899--999


Q ss_pred             HHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC-HHHHHCCCCCCCCEEEEEE
Q ss_conf             688984592162689899987218998877664224433243334557999873200330-1220002345782168887
Q gi|254780268|r   92 AEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF-PVLVKASAGGGGRGMRIAY  170 (443)
Q Consensus        92 a~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGy-PviiKp~~gGGG~Gi~vv~  170 (443)
                      |+.+.++|+.-|--|-+++    |..+++++-..-.++        ..-+..+.|.+.|| |+=|-.+--   +    =.
T Consensus       113 a~~Lk~aGL~riNISLDsL----d~~~f~~IT~~~~l~--------~Vl~gI~~A~~~G~~~vKiN~V~~---~----g~  173 (334)
T PRK00164        113 AAALKDAGLTRVNVSLDSL----DPERFKAITGRDRLD--------QVLAGIDAALAAGLEPVKVNAVLM---K----GV  173 (334)
T ss_pred             HHHHHHCCCCEEEEEEEEC----CHHHHHHHHCCCCHH--------HHHHHHHHHHHCCCCCEEEEEEEE---C----CC
T ss_conf             9999985998699711318----999999984899759--------999999999958987616899963---7----98


Q ss_pred             ECHHHHHHHHHHHHH
Q ss_conf             506689999987543
Q gi|254780268|r  171 SENDLSEAIDQARSE  185 (443)
Q Consensus       171 ~~~el~~a~~~a~~e  185 (443)
                      |.+|+.+.++.+...
T Consensus       174 N~dEi~~li~~~~~~  188 (334)
T PRK00164        174 NDDEIPDLLRWAKDR  188 (334)
T ss_pred             CHHHHHHHHHHHHHC
T ss_conf             989999999999646


No 305
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=53.94  E-value=17  Score=16.83  Aligned_cols=31  Identities=23%  Similarity=0.423  Sum_probs=19.3

Q ss_pred             CEEECCCHHHHHHHHCHHHHHHHHHHCCCCC
Q ss_conf             2162689899987218998877664224433
Q gi|254780268|r  100 IKFIGPSSEHIKIMGDKITAKKTAQQLGIPV  130 (443)
Q Consensus       100 i~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~  130 (443)
                      +++|||+.=.-+.--|=..-|+++..+||-+
T Consensus       161 vNIlGpt~LGF~~r~D~~Ei~RLl~~lGi~V  191 (524)
T PRK02910        161 VNLLGPTALGFHNRDDLTELRRLLATLGIDV  191 (524)
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf             6760777567687788999999998759668


No 306
>PRK13136 consensus
Probab=53.71  E-value=17  Score=16.80  Aligned_cols=172  Identities=14%  Similarity=0.127  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC----CCCEEECCCC-
Q ss_conf             99999999888809659998---585577187767585799918998530006989999999870----9989945853-
Q gi|254780268|r   12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT----GADAIHPGYG-   83 (443)
Q Consensus        12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~----~~daihPGyG-   83 (443)
                      |.-.++++++-+-|...+=+   +|||=..-+-.+.|.+-. |.      +=.+.+.++++.++.    .+--|.=+|- 
T Consensus        26 e~s~~~~~~l~~~G~DiiElGiPfSDP~ADGpvIq~A~~rA-L~------~G~~~~~~~~~v~~~r~~~~~pivlM~Y~N   98 (253)
T PRK13136         26 ERSLESLLALAKGGVNILEVGVPFSDPVADGPVIQEASIRA-LA------QGTTLHDVLTLITSFRQHSEIPIILFTYFN   98 (253)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHHCCCCCCCEEEECCCH
T ss_conf             99999999999659998997899888666579999999999-98------699799999999982257898889986517


Q ss_pred             -HHHCCHHHHHHHHHCCCE-EECCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHHH-CCCCHHHHHC
Q ss_conf             -131097666889845921-62689--8999872189988776642244332433345579998-7320-0330122000
Q gi|254780268|r   84 -FLSENAKFAEILEDHHIK-FIGPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAM-PIAK-EIGFPVLVKA  157 (443)
Q Consensus        84 -fLsEn~~fa~~~e~~Gi~-fIGPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~-~~a~-~iGyPviiKp  157 (443)
                       ++.-..+|.+.|.++|+. +|=|.  .+      .....++.+++.|+..++.....+.++.+ ..++ .-||=-++= 
T Consensus        99 ~i~~~G~~f~~~~~~~GvdGlIipDLP~e------E~~~~~~~~~~~~i~~I~liaPtt~~eRi~~i~~~a~gFiY~vs-  171 (253)
T PRK13136         99 PLLAAGDKIYQQMKSAGVDGCLVVDLPVE------EAAPHLTACKTAKIAPILLISPSTTQERLKKINEHGEGMLYYVC-  171 (253)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEECCCCCHH------HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEE-
T ss_conf             99997999999999749872006789977------76999999997588712552689988999999960898199985-


Q ss_pred             CCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEE
Q ss_conf             234578216888750668999998754321258998168844342011
Q gi|254780268|r  158 SAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPR  205 (443)
Q Consensus       158 ~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~r  205 (443)
                      ..|  --|.+ -.-.+++.+.+.+.++.+     +-++.+-==|..+.
T Consensus       172 ~~G--vTG~~-~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e  211 (253)
T PRK13136        172 RPG--TTGVR-ATLPENFPAKMNQIKSMT-----SLPIVTGFGIANRK  211 (253)
T ss_pred             CCC--CCCCC-CCCHHHHHHHHHHHHHHC-----CCCEEEECCCCCHH
T ss_conf             552--36876-446388999999999726-----99869971549999


No 307
>TIGR00838 argH argininosuccinate lyase; InterPro: IPR009049   This entry represents argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens. ; GO: 0004056 argininosuccinate lyase activity, 0042450 arginine biosynthetic process via ornithine.
Probab=53.70  E-value=9.4  Score=18.61  Aligned_cols=100  Identities=17%  Similarity=0.215  Sum_probs=58.5

Q ss_pred             HHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCC----H
Q ss_conf             999999987099899458531310976668898459216268989998721899887766422443324333455----7
Q gi|254780268|r   64 QQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVY----P  139 (443)
Q Consensus        64 ~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~----~  139 (443)
                      +.|++.|.. .+++|-|||++|    +=|+...=+.--    -+-+--+..|..+.-+++++.++. |=|++...    +
T Consensus       136 ~~L~e~Ae~-~~~~~mPGYTHL----QrAQPi~lAHhL----LAY~~~l~RD~~RL~d~~kR~n~S-PLGsGAlAGt~f~  205 (469)
T TIGR00838       136 KVLIELAEK-HVETLMPGYTHL----QRAQPITLAHHL----LAYAEMLERDYERLQDALKRVNVS-PLGSGALAGTSFP  205 (469)
T ss_pred             HHHHHHHHC-CCCEECCCCCCC----CCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHCCCCC
T ss_conf             999998612-873661485101----350105699999----999989998899999999885048-8655032068987


Q ss_pred             HHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHH
Q ss_conf             99987320033012200023457821688875066899999
Q gi|254780268|r  140 HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAID  180 (443)
Q Consensus       140 ~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~  180 (443)
                      =+-...|+-+||=-+++=|--+       |.+.|=..+.+-
T Consensus       206 iDR~~~A~lLGF~~~~~NSlDa-------VSdRDFi~E~l~  239 (469)
T TIGR00838       206 IDREYTAELLGFDAVTENSLDA-------VSDRDFIIELLF  239 (469)
T ss_pred             CCHHHHHHHCCHHHHHHCCHHH-------HHHHHHHHHHHH
T ss_conf             6888897631867887520466-------520789999999


No 308
>TIGR01980 sufB FeS assembly protein SufB; InterPro: IPR010231   Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems.   The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly .   The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets.   In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen .   This entry represents SufB, which is part of the SUF system and forms a complex with SufBCD.; GO: 0005515 protein binding, 0016226 iron-sulfur cluster assembly.
Probab=53.53  E-value=17  Score=16.87  Aligned_cols=38  Identities=18%  Similarity=0.326  Sum_probs=20.8

Q ss_pred             CHHHHHCCCCCCCCEEEE-EEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf             012200023457821688-87506689999987543212589981688443420
Q gi|254780268|r  151 FPVLVKASAGGGGRGMRI-AYSENDLSEAIDQARSEALAAFGNDAVYIEKYLEN  203 (443)
Q Consensus       151 yPviiKp~~gGGG~Gi~v-v~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~  203 (443)
                      ||=+||=-+      |++ |--.|..-.|++.|.       +++..||  ||+.
T Consensus       158 YPdLVKeYF------~~v~VPp~DnKFAALn~AV-------WSGGsFv--YVPk  196 (469)
T TIGR01980       158 YPDLVKEYF------GKVCVPPSDNKFAALNGAV-------WSGGSFV--YVPK  196 (469)
T ss_pred             CHHHHHHHC------CCCCCCCCCCHHHHHHHHE-------EECCEEE--EECC
T ss_conf             725678662------7002587634146640211-------0278579--8478


No 309
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of  pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many 
Probab=53.39  E-value=17  Score=16.77  Aligned_cols=39  Identities=23%  Similarity=0.280  Sum_probs=27.6

Q ss_pred             HHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             200023457821688875066899999875432125899816884
Q gi|254780268|r  154 LVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       154 iiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      |.||.    .|-...+++++++.+.+++|.+.|...  .++|+|+
T Consensus       121 ~~~~i----tk~~~~v~~~~~~~~~l~~A~~~A~~~--~gPV~l~  159 (162)
T cd07038         121 MFEEI----TCAAARLTDPENAAEEIDRVLRTALRE--SRPVYIE  159 (162)
T ss_pred             HHHHH----EEEEEEECCHHHHHHHHHHHHHHHHHC--CCCEEEE
T ss_conf             99867----328899299999999999999998428--9888996


No 310
>PRK12831 putative oxidoreductase; Provisional
Probab=53.22  E-value=17  Score=16.75  Aligned_cols=28  Identities=14%  Similarity=0.184  Sum_probs=17.8

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             0686644709999999988880965999
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVA   30 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~   30 (443)
                      |||.|++.|+-.+-...-+..+|+++.+
T Consensus       141 kkVAVIGsGPAGLsaA~~La~~G~~VtV  168 (464)
T PRK12831        141 KKVAVIGSGPAGLTCAGDLAKKGYDVTI  168 (464)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEE
T ss_conf             9899989768999999999976991799


No 311
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=53.19  E-value=17  Score=16.74  Aligned_cols=45  Identities=24%  Similarity=0.454  Sum_probs=24.0

Q ss_pred             CCCCCCCCCCCCC--C---CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             0236566542113--5---6225540344558899999999999998865154341024
Q gi|254780268|r  219 AIHFGERDCSVQR--R---NQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTI  272 (443)
Q Consensus       219 ~v~l~erdCSiQr--r---~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tv  272 (443)
                      .||+|..|-++..  +   .+|+|-      +|-.-.+++.   .......+|.|+|.|
T Consensus       218 GVHLGQ~Dlpi~~aR~llG~~~iIG------~S~h~~ee~~---~A~~~gaDYig~Gpv  267 (345)
T PRK02615        218 GVHLGQEDLPLAVARQLLGPEKIIG------RSTTNPEELA---KAIAEGADYIGVGPV  267 (345)
T ss_pred             EEEECCCCCCHHHHHHHCCCCCEEE------ECCCCHHHHH---HHHHCCCCEEEECCE
T ss_conf             7755888789999998739991899------6179999999---998639997998877


No 312
>TIGR01804 BADH betaine aldehyde dehydrogenase; InterPro: IPR011264   Under osmotic stress, betaine aldehyde dehydrogenase oxidises glycine betaine aldehyde into the osmoprotectant glycine betaine, via the second of two oxidation steps from exogenously supplied choline or betaine aldehyde. This choline-glycine betaine synthesis pathway can be found in Gram-positive and Gram-negative bacteria. In Escherichia coli, betaine aldehyde dehydrogenase (betB) is osmotically co-induced with choline dehydrogenase (betA) in the presence of choline. These dehydrogenases are located in a betaine gene cluster with the upstream choline transporter (betT) and transcriptional regulator (betI) . Similar to E. coli, betaine synthesis in Staphylococcus xylosus is also influenced by osmotic stress and the presence of choline with genes localised in a functionally equivalent gene cluster . Organisation of the betaine gene cluster in Sinorhizobium meliloti and Bacillus subtilis differs from that of E. coli by the absence of upstream choline transporter and transcriptional regulator homologues , . Additionally, Bacillus subtilis co-expresses a type II alcohol dehydrogenase with betaine aldehyde dehydrogenase instead of choline dehydrogenase as in E. coli, Staphylococcus xylosus, and Sinorhizobium meliloti . Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family.  ; GO: 0008802 betaine-aldehyde dehydrogenase activity, 0006578 betaine biosynthetic process.
Probab=53.14  E-value=7.4  Score=19.34  Aligned_cols=158  Identities=25%  Similarity=0.384  Sum_probs=81.6

Q ss_pred             CCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCC-------CEEEEEEEEEEEE------CCEEEEEECCCCCCCCCC
Q ss_conf             234578216888750668999998754321258998-------1688443420110------331577734787023656
Q gi|254780268|r  158 SAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGND-------AVYIEKYLENPRH------IEVQIFGDGMGNAIHFGE  224 (443)
Q Consensus       158 ~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~-------~vlvEk~i~~~rh------iEvqVl~D~~g~~v~l~e  224 (443)
                      +...|||-=-+|.+..||..|+..|+.-  .+|..+       +|||++-|...-.      ++-=.+||+.+...-+| 
T Consensus       244 tlELGGKsP~IvFdDADLe~A~d~Al~g--~Ff~~GQVCs~GtRv~V~~~ik~~F~~~L~~R~~~I~~Gd~fd~~T~~G-  320 (471)
T TIGR01804       244 TLELGGKSPLIVFDDADLELAVDQALLG--NFFSAGQVCSNGTRVFVHKKIKEKFLARLVERVKRIKLGDGFDEATEMG-  320 (471)
T ss_pred             HHHCCCCCCCCEECCCCHHHHHHHHHHC--CCCCCCCEECCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCC-
T ss_conf             1201789874133156578886266622--4114671504774453246765999999999886210478867202478-


Q ss_pred             CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC--C-CCCCEEE-EEECCCCEE----EEECCCCCCCCCHH
Q ss_conf             65421135622554034455889999999999999886515--4-3410245-897288349----98227654332016
Q gi|254780268|r  225 RDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKID--Y-RGAGTIE-FLYENGQFY----FIEMNTRLQVEHPV  296 (443)
Q Consensus       225 rdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g--~-~g~~tvE-Fl~~~~~~y----flEvN~Rlqveh~v  296 (443)
                                        |.+|.+.|+++..|-.+.- +=|  + .|-..-+ -=+++|-||    |-.++.-...   |
T Consensus       321 ------------------PliSa~~R~kv~~Yi~~gk-~EgA~l~~GG~~p~~~~l~~G~f~~PTvf~d~~~~M~I---v  378 (471)
T TIGR01804       321 ------------------PLISAEHRDKVLSYIEKGK-EEGARLATGGKVPEDEGLDNGFFIEPTVFTDCTDDMTI---V  378 (471)
T ss_pred             ------------------CCCCHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCEECCEEEECCCCCCEE---E
T ss_conf             ------------------7101777889999998744-04988977785237777678723667367515899738---9


Q ss_pred             HHHHHC-------CCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHCCCCCC
Q ss_conf             788632-------5620112322210222221----13333201245330245662
Q gi|254780268|r  297 TEAITG-------IDLVHEQIYVASENRLSVQ----QKDITFSGHAIECRINAEDP  341 (443)
Q Consensus       297 te~~tg-------vdlv~~~~~~a~g~~l~~~----~~~i~~~g~aie~Ri~aEdp  341 (443)
                      -|+|-|       .+-=.+.|+.|....-++.    -.|+. ++|-+-.||-|=--
T Consensus       379 rEEiFGPV~~v~~F~~E~EvI~~ANdt~yGLAagv~t~Dl~-ra~rv~~~L~~Gt~  433 (471)
T TIGR01804       379 REEIFGPVMSVLTFSSEDEVIARANDTEYGLAAGVFTADLE-RAHRVAARLKAGTV  433 (471)
T ss_pred             EEEECCCEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHH-HHHHHHHHHCCCEE
T ss_conf             87515867665135876999985077513036788887678-88999987216627


No 313
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485    This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=53.09  E-value=17  Score=16.73  Aligned_cols=127  Identities=20%  Similarity=0.303  Sum_probs=76.8

Q ss_pred             HHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCC----HH
Q ss_conf             99999888809659998585577187767585799918998530006989999999870998994585313109----76
Q gi|254780268|r   15 LRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSEN----AK   90 (443)
Q Consensus        15 ~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn----~~   90 (443)
                      .||+|+|+++|+..|=+                   =||-|...  -|+..||+-.++.+..-|=     |--|    ..
T Consensus        52 ~~~~~~a~~fGV~kvKl-------------------TGGEPlLR--~D~~~Ii~~~~~~~~~~vS-----mTTNG~LL~~  105 (324)
T TIGR02668        52 ERIVRVASEFGVRKVKL-------------------TGGEPLLR--KDLIEIIRRIKDYGIKDVS-----MTTNGILLEK  105 (324)
T ss_pred             HHHHHHHHHCCCCEEEE-------------------CCCCCCHH--HHHHHHHHHHCCCCCEEEE-----CCCCHHHHHH
T ss_conf             99999998708832775-------------------17874345--6699999861467503442-----0303144898


Q ss_pred             HHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC-HHHHHCCCCCCCCEEEEE
Q ss_conf             6688984592162689899987218998877664224433243334557999873200330-122000234578216888
Q gi|254780268|r   91 FAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF-PVLVKASAGGGGRGMRIA  169 (443)
Q Consensus        91 fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGy-PviiKp~~gGGG~Gi~vv  169 (443)
                      .|+.+.+|||.-|=-|-+++    |+..+|++=   |.   +.......-+..+.|-+.|+ ||=|=-+--.|       
T Consensus       106 ~A~~Lk~AGLdRVNVSLdtl----d~e~Y~kIT---G~---~~~~~~~Vi~GI~~A~~~GL~PVKlN~Vvl~G-------  168 (324)
T TIGR02668       106 LAKKLKEAGLDRVNVSLDTL----DPEKYKKIT---GQ---SRDALDRVIEGIESAVDAGLTPVKLNMVVLKG-------  168 (324)
T ss_pred             HHHHHHHHCCCEEEECCCCC----CHHHHHHHC---CC---CCCHHHHHHHHHHHHHHCCCCCEEEEEEEECC-------
T ss_conf             99999982856131202678----867888644---89---98607899999999997289813788887547-------


Q ss_pred             EECHH-HHHHHHHHHH
Q ss_conf             75066-8999998754
Q gi|254780268|r  170 YSEND-LSEAIDQARS  184 (443)
Q Consensus       170 ~~~~e-l~~a~~~a~~  184 (443)
                      -|.++ +.+.++.|..
T Consensus       169 ~N~~~~~~~m~~f~~~  184 (324)
T TIGR02668       169 INDNEEIPDMVEFAAD  184 (324)
T ss_pred             CCCCCCHHHHHHHHHH
T ss_conf             7885007999999987


No 314
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=53.00  E-value=17  Score=16.72  Aligned_cols=41  Identities=17%  Similarity=0.258  Sum_probs=28.7

Q ss_pred             HHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf             200023457821688875066899999875432125899816884434
Q gi|254780268|r  154 LVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYL  201 (443)
Q Consensus       154 iiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i  201 (443)
                      ..|-+.+-|.+|.+ |++++||.++++.|...      +++.+||=-|
T Consensus       131 f~~iA~a~G~~~~~-v~~~~el~~al~~a~~~------~~p~liev~i  171 (172)
T cd02004         131 YDLVAEAFGGKGEL-VTTPEELKPALKRALAS------GKPALINVII  171 (172)
T ss_pred             HHHHHHHCCCEEEE-ECCHHHHHHHHHHHHHC------CCCEEEEEEC
T ss_conf             78999975982899-78999999999999958------9969999981


No 315
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=52.95  E-value=4.3  Score=21.01  Aligned_cols=57  Identities=21%  Similarity=0.272  Sum_probs=36.0

Q ss_pred             CCEEEECCC--CCCCEECCCCCCC---EEEEEEECCCHHHHHHHHHHHHHHCEECCCCCCHH
Q ss_conf             844677760--2387707776843---38999955998999999998765408826377888
Q gi|254780268|r  360 LGIRMDSAS--YQGYTVPSYYDSL---IAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIP  416 (443)
Q Consensus       360 ~gvRvDt~~--~~G~~i~~~yDsm---laKiI~~g~~R~~Ai~~l~~aL~~~~I~Gv~TN~~  416 (443)
                      .|||.|||-  +.+..+--.||.+   =.||++++.==++.+.++.+.=.....-||-||+-
T Consensus       251 ~GVR~DSGD~~~~~~~~r~~ld~~G~~~~kIv~SdgLd~~~i~~l~~~g~~id~FGIGT~L~  312 (327)
T cd01570         251 VGVRIDSGDLAYLSKEARKMLDEAGLTKVKIVASNDLDEYTIAALNAQGAPIDAFGVGTRLV  312 (327)
T ss_pred             CEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf             67984798879999999999987799997899979999999999997799734996787612


No 316
>cd01137 PsaA Metal binding protein PsaA.  These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=52.90  E-value=17  Score=16.71  Aligned_cols=33  Identities=18%  Similarity=0.263  Sum_probs=12.4

Q ss_pred             ECCCCCCCCHHCCHHHHHHHHHHCCCCEEE-CCCCH
Q ss_conf             918998530006989999999870998994-58531
Q gi|254780268|r   50 CIGPPSSKDSYLNIQQIVAACEVTGADAIH-PGYGF   84 (443)
Q Consensus        50 ~i~~~~~~~sYldi~~ii~~a~~~~~daih-PGyGf   84 (443)
                      .++++..+.+|-=-+  =++.+-.++|.+. =|.||
T Consensus        44 Lvp~g~dPH~yep~p--~d~~~l~~Adliv~~G~~l   77 (287)
T cd01137          44 IVPPGADPHEYEPTP--SDIKKLSKADLILYNGLNL   77 (287)
T ss_pred             ECCCCCCCCCCCCCH--HHHHHHHCCCEEEECCCCC
T ss_conf             218798975688999--9999995799999858874


No 317
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE.  NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively.  NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein.  NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=52.45  E-value=18  Score=16.67  Aligned_cols=25  Identities=16%  Similarity=-0.032  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHCCCCEEECCCCHHHC
Q ss_conf             8999999987099899458531310
Q gi|254780268|r   63 IQQIVAACEVTGADAIHPGYGFLSE   87 (443)
Q Consensus        63 i~~ii~~a~~~~~daihPGyGfLsE   87 (443)
                      .+.|.++.++.+.++|.---+-+||
T Consensus        70 ~~~I~~~~~~y~P~~I~V~tTC~se   94 (417)
T cd01966          70 EEALDTLAERAKPKVIGLLSTGLTE   94 (417)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf             9999999985298779996553143


No 318
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=52.27  E-value=16  Score=16.92  Aligned_cols=40  Identities=23%  Similarity=0.246  Sum_probs=27.6

Q ss_pred             HHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             22000234578216888750668999998754321258998168844
Q gi|254780268|r  153 VLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEK  199 (443)
Q Consensus       153 viiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk  199 (443)
                      =..|-+.+-|.+|.+ |.+++||.+++++|+..      +++.+||=
T Consensus       137 d~~~iA~a~G~~~~~-v~~~~el~~al~~a~~~------~~p~vIev  176 (178)
T cd02002         137 DFAAIAKAFGVEAER-VETPEELDEALREALAE------GGPALIEV  176 (178)
T ss_pred             CHHHHHHHCCCCEEE-ECCHHHHHHHHHHHHHC------CCCEEEEE
T ss_conf             999999983994899-78999999999999838------99689999


No 319
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=52.25  E-value=18  Score=16.64  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=21.6

Q ss_pred             EECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE------EEECCEEEEEECCC
Q ss_conf             7506689999987543212589981688443420------11033157773478
Q gi|254780268|r  170 YSENDLSEAIDQARSEALAAFGNDAVYIEKYLEN------PRHIEVQIFGDGMG  217 (443)
Q Consensus       170 ~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~------~rhiEvqVl~D~~g  217 (443)
                      ++.++....++.|+...+.  |-.-+++|- ++.      .+.+.+-++|-|.|
T Consensus       150 k~~~~a~~l~~dA~ale~A--Ga~~ivlE~-vp~~la~~It~~~~IPtIGIGAG  200 (240)
T cd06556         150 RGDEAGEQLIADALAYAPA--GADLIVMEC-VPVELAKQITEALAIPLAGIGAG  200 (240)
T ss_pred             CCHHHHHHHHHHHHHHHHC--CCEEEEEEC-CCHHHHHHHHHCCCCCEEEECCC
T ss_conf             7689999999999999847--984998745-84999999995699989972778


No 320
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=52.10  E-value=18  Score=16.63  Aligned_cols=128  Identities=19%  Similarity=0.209  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHCCCCEEE--CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCC---CCCCCCC
Q ss_conf             89999999870998994--585313109766688984592162689899987218998877664224433---2433345
Q gi|254780268|r   63 IQQIVAACEVTGADAIH--PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPV---VPGSGEV  137 (443)
Q Consensus        63 i~~ii~~a~~~~~daih--PGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~---~p~~~~~  137 (443)
                      .+.|++..++.|++-|+  ||=    .+..|-.++.+.++.||....|......==--+| +-.+.||-.   -||.  .
T Consensus        18 a~~lv~~L~~~GV~~vFGvpG~----~~~~l~dal~~~~i~~v~~rhE~~A~~mAdgYar-~tg~~gv~~~t~GPG~--~   90 (570)
T PRK06725         18 AGHVIQCLKKLGVTTVFGYPGG----AILPVYDALYESGLKHILTRHEQAAIHAAEGYAR-ASGKVGVVFATSGPGA--T   90 (570)
T ss_pred             HHHHHHHHHHCCCCEEEECCCC----CHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHH-HHCCCEEEEEECCHHH--H
T ss_conf             9999999998799999976764----2799999997469939804978999999999999-9789989998057689--9


Q ss_pred             CHHHHHHHHHCCCCHHHHHCCC------CCC--------------CCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             5799987320033012200023------457--------------82168887506689999987543212589981688
Q gi|254780268|r  138 YPHTAMPIAKEIGFPVLVKASA------GGG--------------GRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYI  197 (443)
Q Consensus       138 ~~~ea~~~a~~iGyPviiKp~~------gGG--------------G~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlv  197 (443)
                      +.-..+.-|..=+-||++=...      |.+              .|-...+++.+++.+.+++|.+.+.+. .-++|++
T Consensus        91 N~~~gl~~A~~~~~Pvl~i~G~~~~~~~g~~~~q~~d~~~~~~p~tK~~~~v~~~~~i~~~l~~A~~~A~sg-rpGPV~l  169 (570)
T PRK06725         91 NLVTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESG-RPGPVLI  169 (570)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCCHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHC-CCCCEEE
T ss_conf             999999999973998699938897110588865310388661420035232189999999999999998647-9976699


Q ss_pred             E
Q ss_conf             4
Q gi|254780268|r  198 E  198 (443)
Q Consensus       198 E  198 (443)
                      +
T Consensus       170 ~  170 (570)
T PRK06725        170 D  170 (570)
T ss_pred             E
T ss_conf             6


No 321
>PRK11749 putative oxidoreductase; Provisional
Probab=52.01  E-value=18  Score=16.62  Aligned_cols=29  Identities=14%  Similarity=0.184  Sum_probs=21.6

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             06866447099999999888809659998
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAV   31 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v   31 (443)
                      |||.|++.|+-.+-....+.++|+++.+.
T Consensus       141 kkVAIIGaGPAGLsAA~~Lar~G~~VtVf  169 (460)
T PRK11749        141 KKVAVIGAGPAGLTAAHRLARKGYDVTIF  169 (460)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             98999896789999999999769847997


No 322
>PRK13113 consensus
Probab=51.71  E-value=18  Score=16.59  Aligned_cols=173  Identities=14%  Similarity=0.216  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCC-----CCEEECCCC-
Q ss_conf             9999999888809659998---5855771877675857999189985300069899999998709-----989945853-
Q gi|254780268|r   13 IALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTG-----ADAIHPGYG-   83 (443)
Q Consensus        13 ia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~-----~daihPGyG-   83 (443)
                      .-.++++++.+.|...+=+   +|||=..-|-.+.|.+.. |.      +=.+.+.++++.++-.     +--|.=||- 
T Consensus        32 ~s~~~~~~l~~~GaDiiElGiPFSDP~ADGPvIq~A~~rA-L~------~G~~~~~~~~~v~~~r~~~~~~PivlM~Y~N  104 (263)
T PRK13113         32 TSLEVMRGLPAAGVDIIELGMPFTDPMADGPTIQLAGQRA-LE------GGMTLDRTLDMVRAFRKEDDTTPIVMMGYYN  104 (263)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHHHCCCCCCCEEEEECHH
T ss_conf             9999999999769999997898888776589999999999-97------7983889999999751238998889983136


Q ss_pred             -HHHCC-HHHHHHHHHCCCE-EECCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHH-CCCCHHHHH
Q ss_conf             -13109-7666889845921-62689--899987218998877664224433243334557999-87320-033012200
Q gi|254780268|r   84 -FLSEN-AKFAEILEDHHIK-FIGPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTA-MPIAK-EIGFPVLVK  156 (443)
Q Consensus        84 -fLsEn-~~fa~~~e~~Gi~-fIGPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea-~~~a~-~iGyPviiK  156 (443)
                       ++.-. ..|.+.|.++|+. +|=|.  .+      .-...+..+++.|+..++.....++++. ...++ .-||=..+=
T Consensus       105 ~i~~~G~e~F~~~~~~~GvdGvIipDLP~e------E~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~gFiY~Vs  178 (263)
T PRK13113        105 PIYSRGVDRFLAEAKEAGIDGLIVVDLPPE------EDSELCLPAQAAGLNFIRLATPTTDDRRLPKVLQNTSGFVYYVS  178 (263)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCCCHH------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf             898856999999987779436971799978------88999999997798679994799999999999833898489983


Q ss_pred             CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEC
Q ss_conf             023457821688875066899999875432125899816884434201103
Q gi|254780268|r  157 ASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHI  207 (443)
Q Consensus       157 p~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhi  207 (443)
                       ..|-  -|.+ -....++.+.+++.++..     +-++.+-==|..+.|+
T Consensus       179 -~~Gv--TG~~-~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGI~~~e~~  220 (263)
T PRK13113        179 -ITGI--TGAA-AAQAADVAPEVARIKAAT-----DLPVIVGFGITTPEAA  220 (263)
T ss_pred             -CCCC--CCCC-CCCHHHHHHHHHHHHHCC-----CCCEEEECCCCCHHHH
T ss_conf             -4556--6877-554377999999998547-----9988998378998999


No 323
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=51.63  E-value=5.3  Score=20.38  Aligned_cols=57  Identities=26%  Similarity=0.269  Sum_probs=40.2

Q ss_pred             CCCEEEECCC--CCCCEECCCCCCC-----EEEEEEECC-CHHHHHHHHHHHHH-HCEECCCCCCH
Q ss_conf             9844677760--2387707776843-----389999559-98999999998765-40882637788
Q gi|254780268|r  359 GLGIRMDSAS--YQGYTVPSYYDSL-----IAKLIVHGK-NRKECMMRLNRALN-EIIIDGIKTTI  415 (443)
Q Consensus       359 ~~gvRvDt~~--~~G~~i~~~yDsm-----laKiI~~g~-~R~~Ai~~l~~aL~-~~~I~Gv~TN~  415 (443)
                      -.|||.|||-  +.+..+--.||.+     -.|+|.+|. |-+.+++....... .-.+-||-|++
T Consensus       264 ~~gvR~DSGDp~~~~~~~~~~ld~~G~~~~~~~iv~S~~ld~e~~i~~~~~~~~~~~~~FGVGT~l  329 (343)
T cd01567         264 LLGVRLDSGDPVELIKKVRKHLDELGIDLNKKKIIISGDLDTEEAIELLLEQGASPNDAFGVGTSL  329 (343)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             526754999859999999999997599978738999899988999999997389875399708560


No 324
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=51.54  E-value=18  Score=16.57  Aligned_cols=29  Identities=14%  Similarity=0.201  Sum_probs=14.1

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf             01123222102222211333320124533
Q gi|254780268|r  306 VHEQIYVASENRLSVQQKDITFSGHAIEC  334 (443)
Q Consensus       306 v~~~~~~a~g~~l~~~~~~i~~~g~aie~  334 (443)
                      +...+++..++|.-++|+++..+|.-+.+
T Consensus       278 iAi~Ikl~S~GPVff~Q~RvG~~Gk~F~~  306 (442)
T TIGR03013       278 TALAIKLESGGPVLYRQERVGLNGRPFNL  306 (442)
T ss_pred             HHHHHHHCCCCCEEEECCEEECCCEEEEE
T ss_conf             99999741899869988564328736889


No 325
>pfam03575 Peptidase_S51 Peptidase family S51.
Probab=51.45  E-value=18  Score=16.56  Aligned_cols=77  Identities=21%  Similarity=0.209  Sum_probs=50.8

Q ss_pred             HHHHHHHHCCCEEEEECCC---HHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHH
Q ss_conf             9999888809659998585---5771877675857999189985300069899999998709989945853131097666
Q gi|254780268|r   16 RILRACKELGIPTVAVHST---ADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAKFA   92 (443)
Q Consensus        16 riira~~elGi~tv~v~s~---~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa   92 (443)
                      +..++.+.||++...++.-   .+.....+..||-.|. +++       |.-.+++.-++++.|.+            +.
T Consensus         4 ~~~~~f~~lg~~v~~l~~~~~~~~~~~~~i~~ad~I~v-~GG-------nt~~ll~~l~~~g~~~~------------l~   63 (154)
T pfam03575         4 KFREALEKLGLEVSGLHLFTPSVEDIEAKILKADVIYV-GGG-------NTFHLLKLLRETGLDDI------------IR   63 (154)
T ss_pred             HHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEE-CCC-------HHHHHHHHHHHCCCHHH------------HH
T ss_conf             99999997699778986667974729999985999998-987-------59999999998682999------------99


Q ss_pred             HHHHHCCCEEECCCHHHHHHH
Q ss_conf             889845921626898999872
Q gi|254780268|r   93 EILEDHHIKFIGPSSEHIKIM  113 (443)
Q Consensus        93 ~~~e~~Gi~fIGPs~~ai~~~  113 (443)
                      + .-++|..++|-|+-++-..
T Consensus        64 ~-~~~~G~~~~G~SAGa~i~~   83 (154)
T pfam03575        64 E-AVQAGLPYIGWSAGANVAG   83 (154)
T ss_pred             H-HHHCCCEEEEECHHHHHCC
T ss_conf             9-9985977885060466434


No 326
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=51.21  E-value=19  Score=16.53  Aligned_cols=31  Identities=19%  Similarity=0.184  Sum_probs=16.3

Q ss_pred             EEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             88875066899999875432125899816884
Q gi|254780268|r  167 RIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       167 ~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      ..+.+++++.+.+++|.+.+... .-++|+++
T Consensus       138 ~~v~~~~~i~~~l~~A~~~a~~~-rpGPV~l~  168 (588)
T CHL00099        138 YVVRDPRDMSRIVAEAFYIAKHG-RPGPVLID  168 (588)
T ss_pred             EEECCHHHHHHHHHHHHHHHHCC-CCCEEEEE
T ss_conf             68547556299999999997418-98408995


No 327
>PRK09414 glutamate dehydrogenase; Provisional
Probab=50.97  E-value=19  Score=16.51  Aligned_cols=14  Identities=21%  Similarity=0.000  Sum_probs=8.8

Q ss_pred             HHHHCCCCCCCCEE
Q ss_conf             22000234578216
Q gi|254780268|r  153 VLVKASAGGGGRGM  166 (443)
Q Consensus       153 viiKp~~gGGG~Gi  166 (443)
                      +-=||..-||+.|=
T Consensus       191 ~TGKp~~~GGs~gR  204 (446)
T PRK09414        191 LTGKGLSFGGSLIR  204 (446)
T ss_pred             ECCCCCCCCCCCCC
T ss_conf             68997210688687


No 328
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=50.91  E-value=19  Score=16.50  Aligned_cols=122  Identities=20%  Similarity=0.266  Sum_probs=58.8

Q ss_pred             CCCHHHH-HHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCC------EEECC
Q ss_conf             4709999-9999888809659998585577187767585799918998530006989999999870998------99458
Q gi|254780268|r    9 NRGEIAL-RILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGAD------AIHPG   81 (443)
Q Consensus         9 nrGeia~-riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~d------aihPG   81 (443)
                      |+..+++ .+++++.++|++.|+.-+- |..     ..|       .+. .+|++...+++.+|+..-|      |.+|-
T Consensus        88 d~n~~~i~~~l~~~~~~Gi~~ilaLrG-Dpp-----~g~-------~~~-~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe  153 (291)
T COG0685          88 DRNRIEIISILKGAAALGIRNILALRG-DPP-----AGD-------KPG-GKDLYSVDLVELIKKMRGGIFDIGVAAYPE  153 (291)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEECC-CCC-----CCC-------CCC-CCCCCHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf             889899999999999818855999458-987-----778-------878-654689999999998568973589986788


Q ss_pred             CCHHHCCHH-----HHHHHHHCCCEEECC----CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCC
Q ss_conf             531310976-----668898459216268----98999872189988776642244332433345-579998732003
Q gi|254780268|r   82 YGFLSENAK-----FAEILEDHHIKFIGP----SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV-YPHTAMPIAKEI  149 (443)
Q Consensus        82 yGfLsEn~~-----fa~~~e~~Gi~fIGP----s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~-~~~ea~~~a~~i  149 (443)
                      +=..|++..     +.+.++ +|-.|+=+    +.+.+....+|.+.    ....+|+.||.... +...+.-++...
T Consensus       154 ~h~~s~~~~~d~~~lkrKv~-aGAd~~iTQ~~fd~e~~~~~~~~~~~----~g~~~pI~~Gimpi~~~~~~~~~~~~~  226 (291)
T COG0685         154 GHPESKDVKEDIKRLKRKVD-AGADFFITQFFFDVEAFERFAERVRA----AGIDIPIIPGIMPVTNFKQLLRFASLC  226 (291)
T ss_pred             CCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCHHHHHHHHHHHHH----CCCCCCEEEEEEEECCHHHHHHHHHHC
T ss_conf             78441005789999999986-58865764201689999999999986----389985562131013568999999833


No 329
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=50.60  E-value=19  Score=16.47  Aligned_cols=20  Identities=20%  Similarity=0.179  Sum_probs=13.3

Q ss_pred             HHCCHHHHHHHHHHCCCCEE
Q ss_conf             00698999999987099899
Q gi|254780268|r   59 SYLNIQQIVAACEVTGADAI   78 (443)
Q Consensus        59 sYldi~~ii~~a~~~~~dai   78 (443)
                      .+.++..+++.|.+.|...+
T Consensus        14 g~~~~~e~~~~A~~~g~~~~   33 (237)
T COG1387          14 GEATPEEMVEAAIELGLEYI   33 (237)
T ss_pred             CCCCHHHHHHHHHHCCCCEE
T ss_conf             77899999999997399659


No 330
>KOG2518 consensus
Probab=50.52  E-value=19  Score=16.46  Aligned_cols=34  Identities=12%  Similarity=0.167  Sum_probs=20.4

Q ss_pred             CHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHH
Q ss_conf             0999999998888096599985855771877675
Q gi|254780268|r   11 GEIALRILRACKELGIPTVAVHSTADSGAMHVRL   44 (443)
Q Consensus        11 Geia~riira~~elGi~tv~v~s~~D~~a~~~~~   44 (443)
                      -++|-++|+.||.+|++.|+---+.|+...+...
T Consensus       127 ~~ma~~lI~~~r~~nVe~IVAPyEADAQlayL~~  160 (556)
T KOG2518         127 PEMAHKLIQYLRSQNVEYIVAPYEADAQLAYLER  160 (556)
T ss_pred             HHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHH
T ss_conf             9999999999997697558657623212378876


No 331
>pfam06189 5-nucleotidase 5'-nucleotidase. This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (EC:3.1.3.5).
Probab=50.43  E-value=14  Score=17.47  Aligned_cols=12  Identities=17%  Similarity=0.498  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999998888
Q gi|254780268|r   12 EIALRILRACKE   23 (443)
Q Consensus        12 eia~riira~~e   23 (443)
                      ...+|++++++.
T Consensus        47 dtGlRvfnSI~h   58 (263)
T pfam06189        47 DTGLRVFNSINH   58 (263)
T ss_pred             HHHHHHHHHHHH
T ss_conf             347899998997


No 332
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=49.99  E-value=19  Score=16.40  Aligned_cols=13  Identities=23%  Similarity=0.181  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             8999999987099
Q gi|254780268|r   63 IQQIVAACEVTGA   75 (443)
Q Consensus        63 i~~ii~~a~~~~~   75 (443)
                      ...|++...+.|+
T Consensus        43 ~~~vl~~l~~~G~   55 (382)
T cd06839          43 NPALVAHLRQLGD   55 (382)
T ss_pred             CHHHHHHHHHCCC
T ss_conf             9999999997499


No 333
>CHL00176 ftsH cell division protein; Validated
Probab=49.96  E-value=19  Score=16.40  Aligned_cols=15  Identities=7%  Similarity=0.206  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHCCCCE
Q ss_conf             899999998709989
Q gi|254780268|r   63 IQQIVAACEVTGADA   77 (443)
Q Consensus        63 i~~ii~~a~~~~~da   77 (443)
                      -+.+++...+.+++-
T Consensus        96 ~~~~~~~l~~~~v~~  110 (631)
T CHL00176         96 ASELIQKLKEANVDI  110 (631)
T ss_pred             CHHHHHHHHHCCCEE
T ss_conf             889999999869828


No 334
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=49.93  E-value=19  Score=16.40  Aligned_cols=12  Identities=42%  Similarity=0.650  Sum_probs=6.7

Q ss_pred             HCCCEEEEECCC
Q ss_conf             809659998585
Q gi|254780268|r   23 ELGIPTVAVHST   34 (443)
Q Consensus        23 elGi~tv~v~s~   34 (443)
                      .+|++|.+|+..
T Consensus         5 ~~~f~T~~vHag   16 (426)
T COG2873           5 NWGFETLAVHAG   16 (426)
T ss_pred             CCCCCHHHHCCC
T ss_conf             668205553078


No 335
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family; InterPro: IPR004652   This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) and includes NifR3 itself, from Rhodobacter capsulatus. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes , and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. ; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=49.74  E-value=19  Score=16.38  Aligned_cols=92  Identities=24%  Similarity=0.332  Sum_probs=49.0

Q ss_pred             HCCHHHHHHHHHHCCCCEEE----C-------CCCHHHCC-HHHHHHHHHCCCE------------EECC-CHHHHHHHH
Q ss_conf             06989999999870998994----5-------85313109-7666889845921------------6268-989998721
Q gi|254780268|r   60 YLNIQQIVAACEVTGADAIH----P-------GYGFLSEN-AKFAEILEDHHIK------------FIGP-SSEHIKIMG  114 (443)
Q Consensus        60 Yldi~~ii~~a~~~~~daih----P-------GyGfLsEn-~~fa~~~e~~Gi~------------fIGP-s~~ai~~~g  114 (443)
                      -|.-+.++.-..+.=++||-    |       ||-.-.-| .++|+..+++|+.            |=|+ ..+.|+.. 
T Consensus       121 Ll~~p~~~~~iv~~vV~AV~~~~iPVTVK~R~GWD~~h~n~~~~a~~a~~~Ga~Av~lHGRTRaQ~Y~G~A~wd~I~~v-  199 (336)
T TIGR00737       121 LLRDPDLIGKIVKAVVDAVDAQDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYEGEANWDIIARV-  199 (336)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHCCCCCCCCCHHHHHHH-
T ss_conf             2358689999999999875187665166551563624488899999998724000211100000157887606899999-


Q ss_pred             CHHHHHHHHH-HCCCCCCCCCCCCCHHHHHHHHHC------------CCCHHHHHC
Q ss_conf             8998877664-224433243334557999873200------------330122000
Q gi|254780268|r  115 DKITAKKTAQ-QLGIPVVPGSGEVYPHTAMPIAKE------------IGFPVLVKA  157 (443)
Q Consensus       115 DK~~~k~~a~-~~GVP~~p~~~~~~~~ea~~~a~~------------iGyPviiKp  157 (443)
                           |+.+. .-.|||+-.-...++++|+...++            +|.|-|++-
T Consensus       200 -----Kq~v~~~GeiPVigNGDi~~~~~A~~~L~~TG~DGvm~gRG~lG~PWl~~~  250 (336)
T TIGR00737       200 -----KQAVRKEGEIPVIGNGDIFSPEDAKAMLETTGADGVMIGRGALGNPWLFKQ  250 (336)
T ss_pred             -----HHHHHCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEEEECHHCCCCHHHHH
T ss_conf             -----999716875332227742467899999863788689850022278758999


No 336
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=49.16  E-value=20  Score=16.32  Aligned_cols=52  Identities=17%  Similarity=0.268  Sum_probs=19.0

Q ss_pred             HHHHHHHHHCCCEEEC-CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf             7666889845921626-89899987218998877664224433243334557999873
Q gi|254780268|r   89 AKFAEILEDHHIKFIG-PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPI  145 (443)
Q Consensus        89 ~~fa~~~e~~Gi~fIG-Ps~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~  145 (443)
                      ..|++.+++.|+.|+= |-+.     .|-...+++.++.++|+.-+-...+..+...+
T Consensus       111 ~~~~~~l~~~~l~wiEeP~~~-----~d~~~~~~l~~~~~ipIa~gE~~~~~~~~~~~  163 (229)
T cd00308         111 IRLIRALEKYGLAWIEEPCAP-----DDLEGYAALRRRTGIPIAADESVTTVDDALEA  163 (229)
T ss_pred             HHHHHHHHHCCCCEEECCCCC-----CCHHHHHHHHCCCCCCEECCCCCCCHHHHHHH
T ss_conf             999998521398376467766-----27589999961369986378767899999999


No 337
>TIGR02386 rpoC_TIGR DNA-directed RNA polymerase, beta' subunit; InterPro: IPR012754   DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel.   RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise:  RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors.  RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs.  Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits.   This entry represents the beta-prime subunit, RpoC, found in most bacteria. It excludes some, mainly cyanobacterial, species where RpoC is replaced by two homologous proteins that include an additional domain. One arm of the "claw" is predominantly formed by this subunit, the other being predominantly formed by the beta subunit. The active site of the enzyme is defined by three invariant aspartate residues within the beta-prime subunit .; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.
Probab=49.14  E-value=19  Score=16.47  Aligned_cols=100  Identities=22%  Similarity=0.247  Sum_probs=53.5

Q ss_pred             EEEEEEEEEEEECCEEEEEECCCC---C-CCCCCCC---CCC----CCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf             688443420110331577734787---0-2365665---421----1356225540344-55889999999999999886
Q gi|254780268|r  195 VYIEKYLENPRHIEVQIFGDGMGN---A-IHFGERD---CSV----QRRNQKIWEEAHS-PVISAQDRTEIGETCVKAMK  262 (443)
Q Consensus       195 vlvEk~i~~~rhiEvqVl~D~~g~---~-v~l~erd---CSi----Qrr~qkiiEeaPa-p~l~~~~~~~i~~~A~~~~~  262 (443)
                      |..|+=-..-++|+|..+.+|.++   . ..|.+|=   .|.    +-..+|+|  +++ ..|+.+..+++.+..   .+
T Consensus       943 vv~e~DCGT~~Gi~v~ai~~g~~~el~~IesL~DR~vGR~~~edv~~P~~g~~~--~~~N~lI~~~~a~~i~~~G---i~ 1017 (1552)
T TIGR02386       943 VVREEDCGTEEGIEVEAIVEGKDDELEVIESLKDRIVGRYSAEDVVDPETGKLV--AKANTLITEEIAEKIENLG---IE 1017 (1552)
T ss_pred             EEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCEEEEEEEEEEEECCCCCEEE--EECCCCCCHHHHHHHHHCC---CC
T ss_conf             887168788477789999847886488986042116732898753128877288--7157731179999998579---66


Q ss_pred             HHCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf             51543410245897288349982276543320167886325620112322210222
Q gi|254780268|r  263 KIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRL  318 (443)
Q Consensus       263 ~~g~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l  318 (443)
                      +|..+++-|+|                  -+|+|=.+|+|.||.... .+-.|+..
T Consensus      1018 ~v~iRS~LTC~------------------~~~GVC~kCYG~dLat~~-~v~~GEAV 1054 (1552)
T TIGR02386      1018 KVKIRSVLTCE------------------SKHGVCQKCYGRDLATGK-LVEIGEAV 1054 (1552)
T ss_pred             EEEECCCEEEC------------------CCCCCEEECCCCCCCCCC-CCCCCCCC
T ss_conf             89963421406------------------898823100121000485-21136852


No 338
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=48.92  E-value=20  Score=16.29  Aligned_cols=10  Identities=20%  Similarity=0.401  Sum_probs=3.9

Q ss_pred             HHHHHHHHCC
Q ss_conf             6668898459
Q gi|254780268|r   90 KFAEILEDHH   99 (443)
Q Consensus        90 ~fa~~~e~~G   99 (443)
                      ++|..+.+.|
T Consensus       151 E~A~~l~~~G  160 (427)
T TIGR03385       151 EMVEALRERG  160 (427)
T ss_pred             HHHHHHHHCC
T ss_conf             9999999769


No 339
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=48.85  E-value=4.5  Score=20.92  Aligned_cols=89  Identities=17%  Similarity=0.287  Sum_probs=52.6

Q ss_pred             HHHHHHHHCCCCCCCCCCCC--CHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEE----ECHHHHHHHHHHHHHHHCCCC
Q ss_conf             88776642244332433345--579998732003301220002345782168887----506689999987543212589
Q gi|254780268|r  118 TAKKTAQQLGIPVVPGSGEV--YPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAY----SENDLSEAIDQARSEALAAFG  191 (443)
Q Consensus       118 ~~k~~a~~~GVP~~p~~~~~--~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~----~~~el~~a~~~a~~ea~~~fg  191 (443)
                      ..|+.+.++||=---+..+.  +--|+.+|+..+||+++.-      |||+.--.    +++.-+       .|+... +
T Consensus       143 ~Lk~~Ad~~GviyS~~~GDeP~~~mEL~efa~a~G~evv~a------GKGkNnpl~~~a~Pdt~~-------eeA~r~-~  208 (438)
T COG4091         143 ILKQQADAAGVIYSGGAGDEPSSCMELYEFASALGFEVVSA------GKGKNNPLNIDANPDTYE-------EEAKRR-N  208 (438)
T ss_pred             HHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEEC------CCCCCCCCCCCCCCCHHH-------HHHHHC-C
T ss_conf             89987765475885467897177878999998649758861------577689876678981478-------887604-8


Q ss_pred             CCCEEEEEEEEEEEE-CCEEEEEECCCCCC
Q ss_conf             981688443420110-33157773478702
Q gi|254780268|r  192 NDAVYIEKYLENPRH-IEVQIFGDGMGNAI  220 (443)
Q Consensus       192 d~~vlvEk~i~~~rh-iEvqVl~D~~g~~v  220 (443)
                      -.+-|+-.|.+|.+- +|.-.+++.+|-+.
T Consensus       209 ~n~~Ml~sF~DGsKtmvEMaavANaTGl~p  238 (438)
T COG4091         209 MNPRMLVSFQDGSKTMVEMAAVANATGLVP  238 (438)
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHHCCCCCCC
T ss_conf             986786543143089999999854657789


No 340
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=48.74  E-value=20  Score=16.27  Aligned_cols=15  Identities=40%  Similarity=0.678  Sum_probs=8.4

Q ss_pred             CHHHHHHHHHHHHCC
Q ss_conf             099999999888809
Q gi|254780268|r   11 GEIALRILRACKELG   25 (443)
Q Consensus        11 Geia~riira~~elG   25 (443)
                      +-+.-++++-+++-|
T Consensus        23 ~~vg~~i~~nL~~~g   37 (598)
T COG1042          23 GKLGYEILRNLLEYG   37 (598)
T ss_pred             CHHHHHHHHHHHHCC
T ss_conf             215799999998568


No 341
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the  biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to 
Probab=48.66  E-value=20  Score=16.26  Aligned_cols=13  Identities=8%  Similarity=0.194  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             8999999987099
Q gi|254780268|r   63 IQQIVAACEVTGA   75 (443)
Q Consensus        63 i~~ii~~a~~~~~   75 (443)
                      ...|+++..+.|+
T Consensus        37 ~~~vl~~l~~~g~   49 (368)
T cd06810          37 NPHVLRTLAEAGT   49 (368)
T ss_pred             CHHHHHHHHHHCC
T ss_conf             9999999998599


No 342
>PRK06953 short chain dehydrogenase; Provisional
Probab=48.62  E-value=20  Score=16.26  Aligned_cols=36  Identities=31%  Similarity=0.457  Sum_probs=28.7

Q ss_pred             CEEEEE--ECCCHHHHHHHHHHHHCCCEEEEECCCHHHC
Q ss_conf             706866--4470999999998888096599985855771
Q gi|254780268|r    2 ISKILI--ANRGEIALRILRACKELGIPTVAVHSTADSG   38 (443)
Q Consensus         2 ~~~iLi--anrGeia~riira~~elGi~tv~v~s~~D~~   38 (443)
                      ||.+||  ++|| |..-+.+.+-+.|.+.++...+++..
T Consensus         1 MK~~LVTGas~G-IG~a~a~~la~~G~~V~~~~R~~~~l   38 (222)
T PRK06953          1 MKTVLIVGASRG-IGLEFVRQYRADGWRVIATARDAAGL   38 (222)
T ss_pred             CCEEEECCCCHH-HHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             999999475729-99999999998889999996888889


No 343
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=48.50  E-value=20  Score=16.25  Aligned_cols=16  Identities=19%  Similarity=0.154  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHCCCCEE
Q ss_conf             8999999987099899
Q gi|254780268|r   63 IQQIVAACEVTGADAI   78 (443)
Q Consensus        63 i~~ii~~a~~~~~dai   78 (443)
                      .=+.++.||+.|+..|
T Consensus        63 ~i~a~~~ak~~g~~ti   78 (120)
T cd05710          63 TVAAAKFAKEKGATVI   78 (120)
T ss_pred             HHHHHHHHHHCCCEEE
T ss_conf             9999999998699599


No 344
>TIGR02025 BchH magnesium chelatase, H subunit; InterPro: IPR011771    This entry represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring .; GO: 0016851 magnesium chelatase activity, 0015995 chlorophyll biosynthetic process.
Probab=48.48  E-value=8.2  Score=19.05  Aligned_cols=18  Identities=17%  Similarity=0.412  Sum_probs=7.3

Q ss_pred             HHHHHHHHCCCEEEEECC
Q ss_conf             999988880965999858
Q gi|254780268|r   16 RILRACKELGIPTVAVHS   33 (443)
Q Consensus        16 riira~~elGi~tv~v~s   33 (443)
                      -+||++-..|+.++.+|+
T Consensus       287 ~~ir~LE~~Gl~v~p~f~  304 (1384)
T TIGR02025       287 NLIRELEAKGLQVVPAFA  304 (1384)
T ss_pred             HHHHHHHHCCCEEEEEEE
T ss_conf             999999966992788886


No 345
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012691    This entry represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see IPR012689 from INTERPRO). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the members of this family are found in the operon for 4-hydroxyphenylacetic acid catabolism.; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process, 0005737 cytoplasm.
Probab=48.43  E-value=20  Score=16.24  Aligned_cols=199  Identities=18%  Similarity=0.259  Sum_probs=102.7

Q ss_pred             CCEEECCC--HHHHHHHHCHHHHHHHHHHC--CCCCCCCCCCCCHHHHH---HHHHCCC-------CHHHHHCCCCCCCC
Q ss_conf             92162689--89998721899887766422--44332433345579998---7320033-------01220002345782
Q gi|254780268|r   99 HIKFIGPS--SEHIKIMGDKITAKKTAQQL--GIPVVPGSGEVYPHTAM---PIAKEIG-------FPVLVKASAGGGGR  164 (443)
Q Consensus        99 Gi~fIGPs--~~ai~~~gDK~~~k~~a~~~--GVP~~p~~~~~~~~ea~---~~a~~iG-------yPviiKp~~gGGG~  164 (443)
                      +|..-|++  |.+.-+.+-|...-..++..  -||++||+.....+|-+   .+|++.|       -|..+||-      
T Consensus        37 ~~SV~GT~GEP~~~T~EER~~~~E~~~~~~~GR~P~~PGTG~~~~~ETl~~T~~A~E~GA~~AMVIVPYY~KPN------  110 (294)
T TIGR02313        37 AVSVTGTSGEPSSLTLEERKRVIEVVLDTVAGRVPVIPGTGALRLDETLELTKKAKEAGADAAMVIVPYYVKPN------  110 (294)
T ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC------
T ss_conf             57605656988654278899999999976168412237887654035788888888506772157744777987------


Q ss_pred             EEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE--EECCEEEE----EECCCCCCCC----------------
Q ss_conf             1688875066899999875432125899816884434201--10331577----7347870236----------------
Q gi|254780268|r  165 GMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENP--RHIEVQIF----GDGMGNAIHF----------------  222 (443)
Q Consensus       165 Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~--rhiEvqVl----~D~~g~~v~l----------------  222 (443)
                             .+-|-+.|....    .+.+|=+++|= .|+|-  .++|+.-+    .|- -|+|=+                
T Consensus       111 -------QE~LY~~F~~VA----~~VPD~P~~IY-NIPGR~~~~~~~KT~~RL~~D~-PNIVG~K~S~KDlE~~~~~lL~  177 (294)
T TIGR02313       111 -------QEALYDYFKEVA----DAVPDIPLLIY-NIPGRAAVEIEVKTVARLVKDF-PNIVGLKESSKDLEYLSRLLLE  177 (294)
T ss_pred             -------HHHHHHHHHHHH----HHCCCCCEEEE-CCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHH
T ss_conf             -------567899999997----52389757885-2888543411214555554217-7511155542028899999986


Q ss_pred             CCCC----CCCCCC-CCEE-E----EE-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE-EECCCCEEEEECCCCC
Q ss_conf             5665----421135-6225-5----40-34455889999999999999886515434102458-9728834998227654
Q gi|254780268|r  223 GERD----CSVQRR-NQKI-W----EE-AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEF-LYENGQFYFIEMNTRL  290 (443)
Q Consensus       223 ~erd----CSiQrr-~qki-i----Ee-aPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEF-l~~~~~~yflEvN~Rl  290 (443)
                      ..||    |-++-- .+.+ |    -+ |-| +..++....|++.+    .+=+|+++--.-| |++-++..|-.-||= 
T Consensus       178 ~GRDFL~F~G~E~L~~PMl~~G~~G~I~ATA-N~~PK~VA~l~~~~----~~GD~~~A~~LHF~Ll~~N~~~F~DTNP~-  251 (294)
T TIGR02313       178 AGRDFLLFSGLELLTLPMLALGAVGSIAATA-NVLPKKVALLHEKA----LEGDIKRARDLHFELLELNDVLFKDTNPI-  251 (294)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH-CCCCHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHHHCCCCC-
T ss_conf             1734656631788866788731212355540-57706799999887----51653468899999987546654068993-


Q ss_pred             CCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             332016788632562011232221022222113333
Q gi|254780268|r  291 QVEHPVTEAITGIDLVHEQIYVASENRLSVQQKDIT  326 (443)
Q Consensus       291 qveh~vte~~tgvdlv~~~~~~a~g~~l~~~~~~i~  326 (443)
                          ||-....=.-|++-.+|-=+|-+.+..|+.++
T Consensus       252 ----P~K~~L~~MGl~E~~~R~PlG~~~~~~~E~~R  283 (294)
T TIGR02313       252 ----PLKAVLSMMGLLEKVLRRPLGLTSDELEERLR  283 (294)
T ss_pred             ----HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             ----08998755200104535888778767889999


No 346
>PRK13134 consensus
Probab=48.43  E-value=20  Score=16.24  Aligned_cols=104  Identities=15%  Similarity=0.200  Sum_probs=48.2

Q ss_pred             HHHHHHHHHCCCE-EECCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHH-CCCCHHHHHCCCCCCC
Q ss_conf             7666889845921-62689--899987218998877664224433243334557999-87320-0330122000234578
Q gi|254780268|r   89 AKFAEILEDHHIK-FIGPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTA-MPIAK-EIGFPVLVKASAGGGG  163 (443)
Q Consensus        89 ~~fa~~~e~~Gi~-fIGPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea-~~~a~-~iGyPviiKp~~gGGG  163 (443)
                      .+|++.|.++|+. +|=|.  .+      .....+..+++.|+..++.....+.++. ...++ .-||=.++=-.   |-
T Consensus       113 e~F~~~~~~aGvdGvIipDLP~e------E~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~s~gFIY~vs~~---Gv  183 (257)
T PRK13134        113 ERFVRDAADAGVAGCIIPDLPLD------EDADLRALLAARGMDLIALVGPNTGEGRMREYAAVASGYVYVVSVM---GT  183 (257)
T ss_pred             HHHHHHHHHCCCCEEEECCCCHH------HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEECC---CC
T ss_conf             99999998679875994699977------8899999999759826996389999999999996288808998435---56


Q ss_pred             CEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEC
Q ss_conf             21688875066899999875432125899816884434201103
Q gi|254780268|r  164 RGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHI  207 (443)
Q Consensus       164 ~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhi  207 (443)
                      -|.+- ..+.++.+.+++.++..     +-++.+-==|..+.|+
T Consensus       184 TG~~~-~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~v  221 (257)
T PRK13134        184 TGVRD-GLPVEVADTLARARQCF-----SIPVALGFGISRPAQL  221 (257)
T ss_pred             CCCCC-CCHHHHHHHHHHHHHHC-----CCCEEEECCCCCHHHH
T ss_conf             68764-55288999999999706-----9987998067999999


No 347
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=48.32  E-value=20  Score=16.23  Aligned_cols=145  Identities=19%  Similarity=0.141  Sum_probs=60.6

Q ss_pred             ECCCHHHHHHHHHHHHCCCEEEEEC----CCHHHCCC----CHHHCCE--EEECCCCCCCCHHCCHHHHHHHHHHC---C
Q ss_conf             4470999999998888096599985----85577187----7675857--99918998530006989999999870---9
Q gi|254780268|r    8 ANRGEIALRILRACKELGIPTVAVH----STADSGAM----HVRLADE--SVCIGPPSSKDSYLNIQQIVAACEVT---G   74 (443)
Q Consensus         8 anrGeia~riira~~elGi~tv~v~----s~~D~~a~----~~~~ADe--~~~i~~~~~~~sYldi~~ii~~a~~~---~   74 (443)
                      |+.-+=|..|+.++.  |.-.+.|-    ++.+.--.    +-+..|-  ++-||.+.+..++    .+.++|++.   .
T Consensus        11 A~d~~NAkei~eAae--G~v~vGvlskny~tveeav~~mk~y~~~~~~avSVGLGaGDp~Q~~----~Va~Ia~~~~P~H   84 (236)
T TIGR03581        11 ANSIENAKEIYEAAE--GHVLIGVLSKNYPTVEEAIEDMKKYQKEIDNAVSVGLGAGDPNQSA----MVADISAHTQPQH   84 (236)
T ss_pred             CCCHHHHHHHHHHHC--CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHH----HHHHHHHHCCCCC
T ss_conf             287541999998745--8679888607788689999999999974788568842799979999----9999998749765


Q ss_pred             CCEEECCCCHHH----CCHHHHHH----HHHCCCEEE--CCCHH-HHHHHHCHHHHHHHHHHCCCCCCCCCC---CCCHH
Q ss_conf             989945853131----09766688----984592162--68989-998721899887766422443324333---45579
Q gi|254780268|r   75 ADAIHPGYGFLS----ENAKFAEI----LEDHHIKFI--GPSSE-HIKIMGDKITAKKTAQQLGIPVVPGSG---EVYPH  140 (443)
Q Consensus        75 ~daihPGyGfLs----En~~fa~~----~e~~Gi~fI--GPs~~-ai~~~gDK~~~k~~a~~~GVP~~p~~~---~~~~~  140 (443)
                      +.-++||-||--    .+-.+...    --+-|...|  ||.+. .-+..-+=..+-.+++..|.+.+.++.   ....+
T Consensus        85 VNQvFt~ag~sr~~L~~~~T~vN~LvsPTG~~G~VkIsTGp~Ss~~~~~~V~vetAiaml~dmG~~SiKffPm~Gl~~le  164 (236)
T TIGR03581        85 INQVFTGVGTSRALLGQADTVINGLVSPTGTPGLVNISTGPLSSQGKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLE  164 (236)
T ss_pred             CCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEHHHHHHHHHHCCCCEEEEEECCCCCCHH
T ss_conf             46415404777887379870898877588975169945676655688855139999999997398826675067734199


Q ss_pred             HHH---HHHHCCCCHHHHHCCCC
Q ss_conf             998---73200330122000234
Q gi|254780268|r  141 TAM---PIAKEIGFPVLVKASAG  160 (443)
Q Consensus       141 ea~---~~a~~iGyPviiKp~~g  160 (443)
                      |..   +++.+.||  .+-|..|
T Consensus       165 E~~avA~aca~~g~--~lEPTGG  185 (236)
T TIGR03581       165 EYAAVAKACAKHGF--YLEPTGG  185 (236)
T ss_pred             HHHHHHHHHHHCCE--EECCCCC
T ss_conf             99999999997691--5666798


No 348
>PRK05282 peptidase E; Validated
Probab=48.16  E-value=21  Score=16.21  Aligned_cols=73  Identities=19%  Similarity=0.201  Sum_probs=31.7

Q ss_pred             HHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHH
Q ss_conf             99998888096599985855771877675857999189985300069899999998709989945853131097666889
Q gi|254780268|r   16 RILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEIL   95 (443)
Q Consensus        16 riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~   95 (443)
                      ++-++...+|++.+.++...|.. ..++.|| +++++++.       -=.+++..++.+.+.             .-+..
T Consensus        52 ~v~~af~~lg~~v~gih~~~dp~-~AI~~Ad-~I~vgGGN-------TF~Ll~~L~~~gl~~-------------~ir~~  109 (233)
T PRK05282         52 KVAEVLAPLGIEVTGIHRVEDPV-AAIENAD-GIIVGGGN-------TFQLLKQLYERGLLA-------------PIREA  109 (233)
T ss_pred             HHHHHHHHCCCEEEEEECCCCHH-HHHHHCC-EEEECCCC-------HHHHHHHHHHCCCHH-------------HHHHH
T ss_conf             99999986698288762458989-9997499-79986973-------999999999858299-------------99999


Q ss_pred             HHCCCEEECCCHHHH
Q ss_conf             845921626898999
Q gi|254780268|r   96 EDHHIKFIGPSSEHI  110 (443)
Q Consensus        96 e~~Gi~fIGPs~~ai  110 (443)
                      .+.|.+++|-|+-+.
T Consensus       110 V~~G~pYiG~SAGsn  124 (233)
T PRK05282        110 VKNGTPYIGWSAGAN  124 (233)
T ss_pred             HHCCCCEEEECCHHH
T ss_conf             984997796264154


No 349
>PRK13120 consensus
Probab=48.13  E-value=21  Score=16.21  Aligned_cols=221  Identities=12%  Similarity=0.134  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC---CCC--EEECCCC
Q ss_conf             99999999888809659998---585577187767585799918998530006989999999870---998--9945853
Q gi|254780268|r   12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT---GAD--AIHPGYG   83 (443)
Q Consensus        12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~---~~d--aihPGyG   83 (443)
                      +...++++++-+.|...+=+   ||||=..-+-.+.|.+-- |.      .=.+.+.+++..++.   ..+  -|+=||-
T Consensus        35 ~~t~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rA-L~------~G~~l~~vl~~v~~~r~~~~~~PivlM~Y~  107 (285)
T PRK13120         35 QATVPLMHALVRAGADLVELGVPFSDPMADGPVVQRAAERA-IA------QGVGLRRVLELVADFRRDDSVTPVVLMGYA  107 (285)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHHHHCCCCCCEEEEEHH
T ss_conf             99999999999769999997898787456689999999999-97------699844699999998734898888986105


Q ss_pred             --HHHC-CHHHHHHHHHCCCE-EECC--CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHH-HHHHHHC-CCCHHHH
Q ss_conf             --1310-97666889845921-6268--989998721899887766422443324333455799-9873200-3301220
Q gi|254780268|r   84 --FLSE-NAKFAEILEDHHIK-FIGP--SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHT-AMPIAKE-IGFPVLV  155 (443)
Q Consensus        84 --fLsE-n~~fa~~~e~~Gi~-fIGP--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~e-a~~~a~~-iGyPvii  155 (443)
                        +++= ...|++.|.++|+. +|=|  +++      .-..++..+++.|+..++.....+.++ +..+++. =||=..|
T Consensus       108 Npi~~yG~e~F~~~~~~aGvdGlIIpDLP~E------E~~~~~~~~~~~gi~~I~LiaPtT~~eRi~~I~~~s~GFvY~V  181 (285)
T PRK13120        108 NPIERMGQRAFAQAAQAAGVDGVLVVDYPPE------EVDEFAAMLAEAGVAPIFLLAPTSTEARIEAIGRVARGYVYYV  181 (285)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEECCCCCHH------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             4999987999999999839877964799979------9999999999669965899579998999999995089818998


Q ss_pred             HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC-EEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             00234578216888750668999998754321258998168844342011033-15777347870236566542113562
Q gi|254780268|r  156 KASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE-VQIFGDGMGNAIHFGERDCSVQRRNQ  234 (443)
Q Consensus       156 Kp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE-vqVl~D~~g~~v~l~erdCSiQrr~q  234 (443)
                      --...-|.+    -...+++.+.++..++..     +-+|.+-==|..+.|+. +.=.+||    +.+|-.   +    -
T Consensus       182 S~~GVTG~~----~~~~~~l~~~i~~ik~~t-----~~Pv~vGFGIs~~e~v~~~~~~ADG----vIVGSA---i----V  241 (285)
T PRK13120        182 SLKGVTGAG----SLDTDDVARKLALIRRHV-----HIPVGVGFGIRDAASAQRIAAHADA----VVIGSK---L----I  241 (285)
T ss_pred             ECCCCCCCC----CCCHHHHHHHHHHHHHCC-----CCCEEEEECCCCHHHHHHHHCCCCE----EEECHH---H----H
T ss_conf             656546887----556688999999999726-----9975999625989999999702999----998789---9----9


Q ss_pred             EEEEECCCC----CCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             255403445----5889999999999999886515
Q gi|254780268|r  235 KIWEEAHSP----VISAQDRTEIGETCVKAMKKID  265 (443)
Q Consensus       235 kiiEeaPap----~l~~~~~~~i~~~A~~~~~~~g  265 (443)
                      |+|||+.++    .-.+....++.+....+-.+++
T Consensus       242 k~Iee~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d  276 (285)
T PRK13120        242 ETMEQAGAQAGADQKNEAAIAAAQQWLHTIRLALD  276 (285)
T ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99997075456555688999999999999999987


No 350
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=48.04  E-value=21  Score=16.20  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=23.8

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             21688875066899999875432125899816884
Q gi|254780268|r  164 RGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       164 ~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      |....+.+.+++.+.+++|.+.+.+. ..++|+++
T Consensus       119 k~~~~i~~~~~~~~~i~~A~~~a~s~-~~gPv~l~  152 (155)
T cd07035         119 KWAYRVTSPEEIPEALRRAFRIALSG-RPGPVALD  152 (155)
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHCCC-CCCCEEEE
T ss_conf             32578899999999999999997459-89458998


No 351
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=47.95  E-value=21  Score=16.19  Aligned_cols=174  Identities=20%  Similarity=0.271  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC-----CCCEEECCCC
Q ss_conf             99999999888809659998---585577187767585799918998530006989999999870-----9989945853
Q gi|254780268|r   12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT-----GADAIHPGYG   83 (443)
Q Consensus        12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~-----~~daihPGyG   83 (443)
                      |.-.++++++-+.|...+=+   +|||=..-+-.+.|.+.- |..      =.+.+.+++..++.     ..--|.=||-
T Consensus        23 ~~~~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~~A-L~~------G~~~~~~~~~~~~~r~~~~~~pivlM~Y~   95 (258)
T pfam00290        23 ETTLEILEALEEAGADAIELGIPFSDPLADGPTIQRANLRA-LAG------GMTLDQTLELVEEIRNKGTSVPIVLMTYY   95 (258)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HHC------CCCHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             99999999999769999997899888766589999999999-986------99699999999985512899888998520


Q ss_pred             --HHHCC-HHHHHHHHHCCCE-EECC--CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHH-HHHHHH-CCCCHHHH
Q ss_conf             --13109-7666889845921-6268--989998721899887766422443324333455799-987320-03301220
Q gi|254780268|r   84 --FLSEN-AKFAEILEDHHIK-FIGP--SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHT-AMPIAK-EIGFPVLV  155 (443)
Q Consensus        84 --fLsEn-~~fa~~~e~~Gi~-fIGP--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~e-a~~~a~-~iGyPvii  155 (443)
                        ++.-. ..|.+.|.++|+. +|=|  +.+      .-...++.++++|+..++.....+.++ ....++ .-||=..+
T Consensus        96 N~i~~~G~e~F~~~~~~~GvdGvIipDLP~e------E~~~~~~~~~~~~l~~I~lvsPtt~~~Ri~~i~~~s~gFiY~v  169 (258)
T pfam00290        96 NPVLNYGIERFYAQAAEAGVDGLIIPDLPPE------EADPLREAAEKHGIDLIFLVAPTTSDERLKTISEAASGFVYLV  169 (258)
T ss_pred             HHHHHCCHHHHHHHHHHCCCCEEECCCCCHH------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             8898729999999999759977870799988------9999999998458435888458881999999996089808998


Q ss_pred             HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEC
Q ss_conf             0023457821688875066899999875432125899816884434201103
Q gi|254780268|r  156 KASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHI  207 (443)
Q Consensus       156 Kp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhi  207 (443)
                      = ..|  --|.+ -...+++.+.+...++..     +-+|++-==|..+.|+
T Consensus       170 s-~~G--vTG~~-~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~v  212 (258)
T pfam00290       170 S-RAG--VTGAR-NAFNAQLDELVERLKKYT-----NVPVAVGFGISTPEHV  212 (258)
T ss_pred             E-CCC--CCCCC-CCCCHHHHHHHHHHHHCC-----CCCEEEEECCCCHHHH
T ss_conf             5-344--56765-556388999999998606-----9984899457999999


No 352
>PRK10637 cysG siroheme synthase; Provisional
Probab=47.75  E-value=21  Score=16.17  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=27.2

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             06866447099999999888809659998585
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAVHST   34 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v~s~   34 (443)
                      |++||++-|++|.|=++.+-+-|-+..++-.+
T Consensus        13 k~vLVVGGG~vA~rK~~~Ll~agA~VtViap~   44 (457)
T PRK10637         13 RDCLIVGGGDVAERKARLLLDAGARLTVNALA   44 (457)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             86999899899999999998789879998998


No 353
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=47.67  E-value=20  Score=16.35  Aligned_cols=77  Identities=22%  Similarity=0.389  Sum_probs=42.1

Q ss_pred             CEE--EEEECCCHHHHHHHHHHHH--CCCEEEEECCC-HHHCCCCHHHCC----EEEECCCCC--CCCHHCCHHHHHHHH
Q ss_conf             706--8664470999999998888--09659998585-577187767585----799918998--530006989999999
Q gi|254780268|r    2 ISK--ILIANRGEIALRILRACKE--LGIPTVAVHST-ADSGAMHVRLAD----ESVCIGPPS--SKDSYLNIQQIVAAC   70 (443)
Q Consensus         2 ~~~--iLianrGeia~riira~~e--lGi~tv~v~s~-~D~~a~~~~~AD----e~~~i~~~~--~~~sYldi~~ii~~a   70 (443)
                      |||  ||+-++|--.-.+++++++  +.++.+.|.|| +|....  ..|.    ....+....  ..++|  -+.|++..
T Consensus         1 Mkkiavl~SG~GSNl~aii~a~~~~~l~~~i~~Visn~~~a~~l--~~A~~~~Ip~~~i~~~~~~~r~~~--d~~i~~~L   76 (200)
T PRK05647          1 MKRIVVLASGNGSNLQAIIDACAAGQLPAEVVAVISDRPDAYGL--ERAEQAGIPTFVLDHKDFPSREAF--DAALVEAL   76 (200)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHH--HHHHHCCCCEEEECCCCCCCHHHH--HHHHHHHH
T ss_conf             97899999158044999999987599994899999789753665--999975997699677667998999--99999999


Q ss_pred             HHCCCCEEE-CCC
Q ss_conf             870998994-585
Q gi|254780268|r   71 EVTGADAIH-PGY   82 (443)
Q Consensus        71 ~~~~~daih-PGy   82 (443)
                      ++.++|.|. -||
T Consensus        77 ~~~~vDlIvLAGy   89 (200)
T PRK05647         77 DAYEPDLVVLAGF   89 (200)
T ss_pred             HHCCCCEEEECCH
T ss_conf             8649999999881


No 354
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=47.64  E-value=21  Score=16.16  Aligned_cols=32  Identities=16%  Similarity=0.146  Sum_probs=19.7

Q ss_pred             EEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             688875066899999875432125899816884
Q gi|254780268|r  166 MRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       166 i~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      ...+.+++++...+++|.+.+.+. .-++|+++
T Consensus       125 ~~~v~~~~~i~~~l~~A~~~A~~g-~~GPV~l~  156 (548)
T PRK08978        125 SFLVQSLEELPRIMAEAFEIASSG-RPGPVLVD  156 (548)
T ss_pred             EEEECCHHHHHHHHHHHHHHHHCC-CCCCEEEE
T ss_conf             678489999899999999998538-99756986


No 355
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=47.60  E-value=21  Score=16.15  Aligned_cols=12  Identities=17%  Similarity=0.465  Sum_probs=6.8

Q ss_pred             HHHHHHHCCCEE
Q ss_conf             999888809659
Q gi|254780268|r   17 ILRACKELGIPT   28 (443)
Q Consensus        17 iira~~elGi~t   28 (443)
                      |+|-||.||++.
T Consensus        51 VvRf~kkLGf~G   62 (282)
T PRK11557         51 VVKFAQKLGYKG   62 (282)
T ss_pred             HHHHHHHHCCCC
T ss_conf             999999938998


No 356
>PRK07102 short chain dehydrogenase; Provisional
Probab=47.52  E-value=21  Score=16.14  Aligned_cols=36  Identities=25%  Similarity=0.215  Sum_probs=29.2

Q ss_pred             CEEEEE--ECCCHHHHHHHHHHHHCCCEEEEECCCHHHC
Q ss_conf             706866--4470999999998888096599985855771
Q gi|254780268|r    2 ISKILI--ANRGEIALRILRACKELGIPTVAVHSTADSG   38 (443)
Q Consensus         2 ~~~iLi--anrGeia~riira~~elGi~tv~v~s~~D~~   38 (443)
                      ||+|||  |.+| |..-+.+.+-+.|.+.+++.-+.+..
T Consensus         1 MK~vlITGassG-IG~a~A~~la~~G~~v~l~~R~~~~l   38 (243)
T PRK07102          1 MKKILIIGATSD-IARACARRYAAAGARLYLAARDTERL   38 (243)
T ss_pred             CCEEEEECCCHH-HHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             997999157459-99999999998799899998988999


No 357
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=47.38  E-value=21  Score=16.13  Aligned_cols=71  Identities=20%  Similarity=0.339  Sum_probs=38.3

Q ss_pred             HHHHHHHHHCCCCEEECCCCHHHCC--HHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf             9999999870998994585313109--76668898459216268989998721899887766422443324333455799
Q gi|254780268|r   64 QQIVAACEVTGADAIHPGYGFLSEN--AKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHT  141 (443)
Q Consensus        64 ~~ii~~a~~~~~daihPGyGfLsEn--~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~e  141 (443)
                      +.+..-+++.+++-+|.|.    +|  ..+.+.|++.|+.     ++-+.-+||=+.=-.+++++|++..|.-   ...+
T Consensus        79 ~~v~~Ra~~Lgi~~~~~g~----~dK~~~l~~l~~~~gl~-----~eevayiGDDi~Dl~~m~~vGls~~P~D---A~~~  146 (186)
T PRK09484         79 KIVEDRMTTLGITHIYQGQ----SNKLIAYSDLLEKLAIA-----PEQVAYIGDDLIDWPVMEKVGLSVAVAD---AHPL  146 (186)
T ss_pred             HHHHHHHHHHCCCEEEECH----HHHHHHHHHHHHHHCCC-----HHHEEEECCCCCHHHHHHHCCCCCCCCC---CCHH
T ss_conf             8999999961898899370----76999999999980989-----9991520687226999987695216664---0799


Q ss_pred             HHHHH
Q ss_conf             98732
Q gi|254780268|r  142 AMPIA  146 (443)
Q Consensus       142 a~~~a  146 (443)
                      +++.+
T Consensus       147 Vk~~a  151 (186)
T PRK09484        147 LIPRA  151 (186)
T ss_pred             HHHHC
T ss_conf             99868


No 358
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=47.21  E-value=21  Score=16.11  Aligned_cols=29  Identities=28%  Similarity=0.351  Sum_probs=26.0

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             06866447099999999888809659998
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAV   31 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v   31 (443)
                      |++||.+-|++|.|=++++.+-|-...+|
T Consensus        14 k~vLVvGGG~VA~rK~~~Ll~~ga~VtVv   42 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVV   42 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             87999889899999999998787969999


No 359
>PRK02769 histidine decarboxylase; Provisional
Probab=47.10  E-value=14  Score=17.43  Aligned_cols=51  Identities=22%  Similarity=0.285  Sum_probs=24.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHC-CCCHHHHHCCCCCCCCEEEEEEECHHHHHHHH
Q ss_conf             4433243334557999873200-33012200023457821688875066899999
Q gi|254780268|r  127 GIPVVPGSGEVYPHTAMPIAKE-IGFPVLVKASAGGGGRGMRIAYSENDLSEAID  180 (443)
Q Consensus       127 GVP~~p~~~~~~~~ea~~~a~~-iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~  180 (443)
                      .||+-+. ...+.+++.+..++ -..|++|=+..|---+|.  +.+-+++.+..+
T Consensus       136 ~V~~~~~-G~md~~~L~~~i~~~~~~P~iv~at~GTT~~Ga--iD~i~~i~~i~~  187 (380)
T PRK02769        136 VITSLPN-GEIDYDDLISKIKENKNQPPIIFANIGTTMTGA--IDNIKEIQEILK  187 (380)
T ss_pred             EECCCCC-CCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCC--CCCHHHHHHHHH
T ss_conf             7367999-949799999999967998779999647988867--189999999999


No 360
>TIGR02483 PFK_mixed phosphofructokinase; InterPro: IPR012829    Members of this family that are characterised, save one, are phosphofructokinases dependent on pyrophosphate (2.7.1.90 from EC) rather than ATP (2.7.1.11 from EC). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.; GO: 0005524 ATP binding, 0008443 phosphofructokinase activity, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=46.95  E-value=21  Score=16.12  Aligned_cols=91  Identities=23%  Similarity=0.288  Sum_probs=58.7

Q ss_pred             HHHHHHHCCCEEEEEC-------CCHHHCC-CCHHHCCEEEECCC-------CCCCCHHC--CH----------HHHHHH
Q ss_conf             9998888096599985-------8557718-77675857999189-------98530006--98----------999999
Q gi|254780268|r   17 ILRACKELGIPTVAVH-------STADSGA-MHVRLADESVCIGP-------PSSKDSYL--NI----------QQIVAA   69 (443)
Q Consensus        17 iira~~elGi~tv~v~-------s~~D~~a-~~~~~ADe~~~i~~-------~~~~~sYl--di----------~~ii~~   69 (443)
                      +-|++.+.|++.|.++       .++|... .+...=+.-+..|+       ..++-+|.  +.          |++.+-
T Consensus        22 V~~a~~~~G~EV~G~~~Gw~GLL~n~~~~~lL~~~~v~gIL~~GGTILGsSNr~NPF~~~~~~~~G~~v~~DvSd~~~~n  101 (339)
T TIGR02483        22 VRRAIAEYGWEVIGIRDGWRGLLENGDIVPLLDLEDVRGILPRGGTILGSSNRTNPFKYEEDGEDGKTVVRDVSDKIVAN  101 (339)
T ss_pred             HHHHHEECCCEEEEEECCCHHHHCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCHHHHHH
T ss_conf             55331012866888700000011166603547810168798519908725777787420010579827997320899998


Q ss_pred             HHHCCCCEEEC--CCCHHHCCHHHHHHHHHCC-CEEECCCHHHHHH
Q ss_conf             98709989945--8531310976668898459-2162689899987
Q gi|254780268|r   70 CEVTGADAIHP--GYGFLSENAKFAEILEDHH-IKFIGPSSEHIKI  112 (443)
Q Consensus        70 a~~~~~daihP--GyGfLsEn~~fa~~~e~~G-i~fIGPs~~ai~~  112 (443)
                      .++.|.||+-|  |=|=|    .-|+.+.+.| |+.|| -|++|+.
T Consensus       102 ~~~~GlDAlIaIGGdGTL----~~A~~l~~~GGl~vVG-VPKTIDN  142 (339)
T TIGR02483       102 LKELGLDALIAIGGDGTL----GIARRLADKGGLPVVG-VPKTIDN  142 (339)
T ss_pred             HHHCCCEEEEEECCCCHH----HHHHHHHHCCCCCEEE-ECCCCCC
T ss_conf             996498189986687268----9999999658985474-1577546


No 361
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=46.88  E-value=21  Score=16.08  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=29.8

Q ss_pred             CCEEEEEECCCHHHH----HHHHHHHHCCCEEEEECCCHH
Q ss_conf             970686644709999----999988880965999858557
Q gi|254780268|r    1 MISKILIANRGEIAL----RILRACKELGIPTVAVHSTAD   36 (443)
Q Consensus         1 m~~~iLianrGeia~----riira~~elGi~tv~v~s~~D   36 (443)
                      |-||||+.=-|-||.    .++|.+++.|.+.-++-|+..
T Consensus         1 m~K~IllgvtGsIAayK~~~lir~L~k~g~~V~vi~T~~A   40 (180)
T PRK07313          1 MTKKILLAVSGSIAAYKAADLTSQLTKIGYDVTVIMTKAA   40 (180)
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf             9976999995499999999999999988995999977469


No 362
>PRK13123 consensus
Probab=46.72  E-value=22  Score=16.06  Aligned_cols=171  Identities=20%  Similarity=0.239  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCC--EEECCCC--HHH
Q ss_conf             999999888809659998---585577187767585799918998530006989999999870998--9945853--131
Q gi|254780268|r   14 ALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGAD--AIHPGYG--FLS   86 (443)
Q Consensus        14 a~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~d--aihPGyG--fLs   86 (443)
                      -.++++++-+-|...+=+   +|||=..-+-.+.|.+-. |.      .=.+.+.+++..++.+.+  -|.=||-  ++.
T Consensus        31 ~~~~i~~l~~~GaDiiElGiPFSDPvADGPvIq~A~~rA-L~------~G~~~~~~~~~~~~~~~~~PivlMtY~N~i~~  103 (256)
T PRK13123         31 LKETIRFLEEAGVSAIEIGIPFSDPVADGPVIQLAGLRA-LA------SGVSLKAILQALIEKETQIPLVIMTYINPVFQ  103 (256)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHH
T ss_conf             999999999769999997899888666579999989999-86------79969999988763057998897404258987


Q ss_pred             CC-HHHHHHHHHCCCE-EECCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHH-CCCCH--HHHHCC
Q ss_conf             09-7666889845921-62689--899987218998877664224433243334557999-87320-03301--220002
Q gi|254780268|r   87 EN-AKFAEILEDHHIK-FIGPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTA-MPIAK-EIGFP--VLVKAS  158 (443)
Q Consensus        87 En-~~fa~~~e~~Gi~-fIGPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea-~~~a~-~iGyP--viiKp~  158 (443)
                      -. ..|.+.|.++|+. +|=|.  .+      ....++..+++.|+..++.....++++. ...++ .-||=  +-++.+
T Consensus       104 yG~e~F~~~~~~~GvdGvIipDLP~e------E~~~~~~~~~~~gi~~I~liaPtt~~~Ri~~i~~~a~GFiY~Vs~~Gv  177 (256)
T PRK13123        104 YGIERFVEDLAETGVKGLIIPDLPYE------HQDFIAPLLRDTDIALIPLVSLTSPIERQKEIIKEAEGFIYAVAVNGV  177 (256)
T ss_pred             CCHHHHHHHHHHCCCCEEECCCCCHH------HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             18999999999749978973799967------899999999976997786408999388999998607884899744556


Q ss_pred             CCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC
Q ss_conf             34578216888750668999998754321258998168844342011033
Q gi|254780268|r  159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE  208 (443)
Q Consensus       159 ~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE  208 (443)
                      -     |.+ -...+++.+.+++.++..     +-++.+-==|..+.|+.
T Consensus       178 T-----G~~-~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~v~  216 (256)
T PRK13123        178 T-----GKR-GNYRDDLDSHLEKLKSIA-----HIPVLAGFGISTLEDVE  216 (256)
T ss_pred             C-----CCC-CCCHHHHHHHHHHHHHCC-----CCCEEEECCCCCHHHHH
T ss_conf             6-----765-333388999999998568-----99879976889999999


No 363
>TIGR00033 aroC chorismate synthase; InterPro: IPR000453 Chorismate synthase (4.2.3.5 from EC) catalyzes the last of the seven steps in the shikimate pathway which is used in prokaryotes, fungi and plants for the biosynthesis of aromatic amino acids. It catalyzes the 1,4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine, tyrosine or tryptophan biosynthesis. Chorismate synthase requires the presence of a reduced flavin mononucleotide (FMNH2 or FADH2) for its activity. Chorismate synthase from various sources shows ,  a high degree of sequence conservation. It is a protein of about 360 to 400 amino-acid residues.; GO: 0004107 chorismate synthase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=46.65  E-value=13  Score=17.55  Aligned_cols=64  Identities=27%  Similarity=0.311  Sum_probs=51.4

Q ss_pred             CCCCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-----C--CEEEEECCCCCC
Q ss_conf             42113562--25540344558899999999999998865154341024589728-----8--349982276543
Q gi|254780268|r  227 CSVQRRNQ--KIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYEN-----G--QFYFIEMNTRLQ  291 (443)
Q Consensus       227 CSiQrr~q--kiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~-----~--~~yflEvN~Rlq  291 (443)
                      .|-|+.++  .+||..|....+++..++|.++-.++-+.-+=.| |-|++++.+     |  +++|--++.+|=
T Consensus       190 ~~~e~~~~lieiie~~p~r~~d~~~~~~m~~~i~~~~~~~Ds~G-Gvv~~~~~~vPvGlGSyep~F~KLdA~LA  262 (391)
T TIGR00033       190 ISKERLDSLIEIIEISPVRCPDPEAEKEMEEEIDKAKKDGDSIG-GVVEVVASNVPVGLGSYEPLFDKLDAELA  262 (391)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC-EEEEEEECCCCCCCCCCCCCCCCHHHHHH
T ss_conf             42889998877661584126780068999999999965268115-08999963678420330012664558888


No 364
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=46.47  E-value=22  Score=16.04  Aligned_cols=175  Identities=12%  Similarity=0.108  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHH-CCCCEEECCCC--HH
Q ss_conf             99999999888809659998---58557718776758579991899853000698999999987-09989945853--13
Q gi|254780268|r   12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEV-TGADAIHPGYG--FL   85 (443)
Q Consensus        12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~-~~~daihPGyG--fL   85 (443)
                      |--.++++++.+. ...+=+   +|||=..-+-.+.|.+.. +.      +=.+...+++..++ .+.--|.=||=  |+
T Consensus        19 e~s~~~l~~l~~~-aDiiElGiPfSDPvADGpvIq~A~~~A-l~------~g~~~~~i~~~~r~~~~~pivlM~Y~N~~~   90 (247)
T PRK13125         19 ETFLEAIDGLVGL-VDFLELGIPPKNPKYDGPVIRKAHREV-SY------WGLDYWSLLEEVRKKVGVPTYIMTYLEDYV   90 (247)
T ss_pred             HHHHHHHHHHHHC-CCEEEECCCCCCCCCCHHHHHHHHHHH-HH------CCCCHHHHHHHHCCCCCCCEEEHHHHHHHH
T ss_conf             9999999998647-999997998898766609999999999-87------699899999985056899889729889999


Q ss_pred             HCCHHHHHHHHHCCCE-EECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHHC-CCCH-HHHHCCCCC
Q ss_conf             1097666889845921-62689899987218998877664224433243334557999-873200-3301-220002345
Q gi|254780268|r   86 SENAKFAEILEDHHIK-FIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTA-MPIAKE-IGFP-VLVKASAGG  161 (443)
Q Consensus        86 sEn~~fa~~~e~~Gi~-fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea-~~~a~~-iGyP-viiKp~~gG  161 (443)
                      .--.+|.+.|.++|+. +|=|.-- ++.-++.......++++|+..++.....+.++. ...++. -||= +.+++    
T Consensus        91 ~g~e~F~~~~~~~GvdGvIipDLP-~e~~ee~~~~~~~~~~~gl~~I~lvsPtt~~~ri~~i~~~s~gFvY~~~~g----  165 (247)
T PRK13125         91 GSLDDLLNTAKEVGARGVLFPDLL-IDFPDELEKYVELIRRYGLAPVFFTSPKFPDRLIRRLSKLSPLFIYLGLYP----  165 (247)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCC-CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEEC----
T ss_conf             769999999998599758833888-754678999999999769846999579981999999998689779999443----


Q ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEC
Q ss_conf             7821688875066899999875432125899816884434201103
Q gi|254780268|r  162 GGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHI  207 (443)
Q Consensus       162 GG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhi  207 (443)
                       .-|.+   .+..+.+.+++.+...    .+-+|.+===|..+.|+
T Consensus       166 -vTG~~---~~~~~~~~i~~ik~~~----~~~Pv~vGFGI~t~e~v  203 (247)
T PRK13125        166 -ATGVE---LPVYVERNIKRVRELV----GDVYLVAGFAIDSPEDA  203 (247)
T ss_pred             -CCCCC---CCCCHHHHHHHHHHHC----CCCCEEEECCCCCHHHH
T ss_conf             -67887---7325999999999856----99985883287999999


No 365
>PRK06847 hypothetical protein; Provisional
Probab=46.42  E-value=22  Score=16.03  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=28.3

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             706866447099999999888809659998585
Q gi|254780268|r    2 ISKILIANRGEIALRILRACKELGIPTVAVHST   34 (443)
Q Consensus         2 ~~~iLianrGeia~riira~~elGi~tv~v~s~   34 (443)
                      +|||+|++-|...+=..-.+++.|++++++-..
T Consensus         4 ~kkV~IVGaG~aGL~lA~~L~~~Gi~v~V~E~~   36 (375)
T PRK06847          4 VKKVLIVGGGIGGMSAAIALRKAGISVDLVEID   36 (375)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             987999996689999999999679999999089


No 366
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=46.41  E-value=22  Score=16.03  Aligned_cols=74  Identities=18%  Similarity=0.205  Sum_probs=40.3

Q ss_pred             EEEEEECCC---HHHHHHHHHHHHCCCEEEEECCC--HHHCC---CCHHHCCEEEECCCCCCCCHH----CCHHHHHHHH
Q ss_conf             068664470---99999999888809659998585--57718---776758579991899853000----6989999999
Q gi|254780268|r    3 SKILIANRG---EIALRILRACKELGIPTVAVHST--ADSGA---MHVRLADESVCIGPPSSKDSY----LNIQQIVAAC   70 (443)
Q Consensus         3 ~~iLianrG---eia~riira~~elGi~tv~v~s~--~D~~a---~~~~~ADe~~~i~~~~~~~sY----ldi~~ii~~a   70 (443)
                      .++|++.-|   ....-+.|++++.|.++++|+.-  .|..-   .....+|+.+.-   +...||    +=.+.|-++.
T Consensus        99 g~vv~VgGGvG~Ap~~piakalk~~Gn~v~~I~Gar~k~~vilede~~~~~d~~~it---TDDGS~G~kG~VT~~L~~ll  175 (760)
T PRK12778         99 GTVVCAGGGVGVAPMLPIVQALKAAGNRVITVLAGRSKELIILEKEMRESSDEVIIM---TDDGSYGRKGLVTEGVEEVI  175 (760)
T ss_pred             CEEEEEECCEEHHHHHHHHHHHHHCCCEEEEEEECCCHHHEEHHHHHHHHCCEEEEE---CCCCCCCCCCEECHHHHHHH
T ss_conf             739999586968987999999998699599998426633403599999743869998---58999972745667799997


Q ss_pred             HHCCCCEEE
Q ss_conf             870998994
Q gi|254780268|r   71 EVTGADAIH   79 (443)
Q Consensus        71 ~~~~~daih   79 (443)
                      ++.++|.|+
T Consensus       176 ~~~~~D~v~  184 (760)
T PRK12778        176 KREKVNKCF  184 (760)
T ss_pred             HCCCCCEEE
T ss_conf             488987899


No 367
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=46.38  E-value=22  Score=16.03  Aligned_cols=93  Identities=14%  Similarity=0.136  Sum_probs=47.4

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf             06866447099999999888809659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY   82 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy   82 (443)
                      |||.|++.|+-.+-...-++.+|++ |.||-..+..   -.+.  .|-||.-.-+...  ++.=|+..++.|+.- +.|.
T Consensus       194 KkVAIIGaGPAGLsaAy~L~~~Gh~-VTVfE~~~~~---GGml--ryGIP~yRLPk~v--ld~EI~~i~~~GV~~-~~n~  264 (652)
T PRK12814        194 KKVAIIGAGPAGLTAAYYLLRKGHD-VTIFDANEQA---GGMM--RYGIPRFRLPESV--IDADIAPLRAMGAEF-RFNT  264 (652)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCE-EEEEECCCCC---CCEE--EECCCCCCCCHHH--HHHHHHHHHHCCCEE-EEEE
T ss_conf             9799968378999999999977990-6998158888---9867--6448633389999--999999999719858-8667


Q ss_pred             CHHHCCHHHHHHHHHCCCEEECC
Q ss_conf             31310976668898459216268
Q gi|254780268|r   83 GFLSENAKFAEILEDHHIKFIGP  105 (443)
Q Consensus        83 GfLsEn~~fa~~~e~~Gi~fIGP  105 (443)
                      - +..+..|.+..++..-.|||.
T Consensus       265 ~-vG~ditl~~L~~~yDAVflai  286 (652)
T PRK12814        265 V-FGRDITLEELQKEFDAVLLAV  286 (652)
T ss_pred             E-ECCCCCHHHHHHHCCEEEEEE
T ss_conf             9-477477999986589999975


No 368
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=46.22  E-value=22  Score=16.01  Aligned_cols=117  Identities=14%  Similarity=0.216  Sum_probs=58.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCC---CHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCE-EE
Q ss_conf             6866447099999999888809659998585577187---7675857999189985300069899999998709989-94
Q gi|254780268|r    4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAM---HVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADA-IH   79 (443)
Q Consensus         4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~---~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~da-ih   79 (443)
                      ||||.+-|-+.+.+++.+--+|+..+.+ .|.|..-.   +.+.-=.--.+|...       .+..-+.+++-+.+. |.
T Consensus         1 KVlvvGaGglG~e~lk~La~~Gvg~i~i-vD~D~Ie~SNLnRQfLf~~~diGk~K-------a~~a~~~l~~~Np~v~I~   72 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHI-IDLDTIDLSNLNRQFLFRKKHVGKSK-------AQVAKEAVLSFNPNVKIV   72 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCCCCCCCCCHHHCCCCH-------HHHHHHHHHHHCCCCEEE
T ss_conf             9899888888999999999828985999-71992261014668276822188709-------999999999888896799


Q ss_pred             CCCCHHHCCHHHH-HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCC
Q ss_conf             5853131097666-889845921626898999872189988776642244332433
Q gi|254780268|r   80 PGYGFLSENAKFA-EILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGS  134 (443)
Q Consensus        80 PGyGfLsEn~~fa-~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~  134 (443)
                      +=.+.+.| ..|. +-+++..+.+-|-.     ...-|..--+.+...++|-+.+.
T Consensus        73 ~~~~~i~~-~~~~~~f~~~~DvVi~alD-----N~~aR~~vN~~C~~~~~PlIegG  122 (312)
T cd01489          73 AYHANIKD-PDFNVEFFKQFDLVFNALD-----NLAARRHVNKMCLAADVPLIESG  122 (312)
T ss_pred             EECCCCCC-CCCCHHHHHHCCEEEECCC-----CHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             86167668-6434988962999997667-----89999999999998399759720


No 369
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=46.16  E-value=22  Score=16.00  Aligned_cols=46  Identities=17%  Similarity=0.200  Sum_probs=30.8

Q ss_pred             CEEEEEECCCHHHH-HHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCC
Q ss_conf             70686644709999-99998888096599985855771877675857999189
Q gi|254780268|r    2 ISKILIANRGEIAL-RILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGP   53 (443)
Q Consensus         2 ~~~iLianrGeia~-riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~   53 (443)
                      ||+|+|.|=|-==+ .|.|+++++|.++..+ ++++    ....+|.. .||+
T Consensus         1 Mk~I~Iid~G~~n~~si~~~l~~lg~~~~i~-~~~~----~l~~~d~i-ILPG   47 (201)
T PRK13143          1 MKMIVIIDYGLGNLRSVSKGLERAGADVEIT-SDPE----EILSADGI-VLPG   47 (201)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCCEEEEC-CCHH----HHHHCCEE-EECC
T ss_conf             9889999889719999999999869859992-8999----98437967-9738


No 370
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating); InterPro: IPR013357   Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NAD(P) as a cofactor. In eukaryotes, at least twenty distinct aldehyde dehydrogenase families have been classified . Many aldehyde dehydrogenases have also been found in prokaryotic species. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase, though these residues are not necessarily conserved in all the enzymes of this family.   The acetaldehyde dehydrogenase family (1.2.1.10 from EC) of bacterial enzymes catalyse the formation of acetyl-CoA from acetaldehyde in the degradation of phenols, cresols and catechol . Proteins in this entry occur in bacterial species and are annotated as probable acetaldehyde dehydrogenases, though this function has not been experimentally verified..
Probab=45.49  E-value=22  Score=16.04  Aligned_cols=102  Identities=19%  Similarity=0.228  Sum_probs=56.2

Q ss_pred             CCEEECCCHHHHHHHHC-HHHHHHHHHHCCCCC--CCCCCCCC---HHHHHHHHHC-----CCCHHHHHCCCCCC--CCE
Q ss_conf             92162689899987218-998877664224433--24333455---7999873200-----33012200023457--821
Q gi|254780268|r   99 HIKFIGPSSEHIKIMGD-KITAKKTAQQLGIPV--VPGSGEVY---PHTAMPIAKE-----IGFPVLVKASAGGG--GRG  165 (443)
Q Consensus        99 Gi~fIGPs~~ai~~~gD-K~~~k~~a~~~GVP~--~p~~~~~~---~~ea~~~a~~-----iGyPviiKp~~gGG--G~G  165 (443)
                      +-+++-|-|.|..-.=+ =-..++.|.++|-|.  +-....++   .+|+..--+.     -|-|-||||+|..|  -+|
T Consensus       133 NaIv~SPHP~A~kc~i~tv~l~~~AA~~AGaP~g~I~~~t~ptiegTneLMK~kdts~IlATGG~aMVkAAYSSG~PAIG  212 (528)
T TIGR02518       133 NAIVFSPHPNAKKCIIETVKLIRKAAEEAGAPEGAIGCITVPTIEGTNELMKNKDTSLILATGGEAMVKAAYSSGTPAIG  212 (528)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEEECCCHHHHHHECCCCCCCCC
T ss_conf             80576697106789999999999999854798672210102422455554024680689960770253300037786212


Q ss_pred             E------EEEEECHHHHHHHHHHHHHHHCCCCCCC-------EEEEEEEE
Q ss_conf             6------8887506689999987543212589981-------68844342
Q gi|254780268|r  166 M------RIAYSENDLSEAIDQARSEALAAFGNDA-------VYIEKYLE  202 (443)
Q Consensus       166 i------~vv~~~~el~~a~~~a~~ea~~~fgd~~-------vlvEk~i~  202 (443)
                      +      -....-.+++.|++.... | +.|+++.       |+||+.-.
T Consensus       213 VGpGNgPAyIe~~Anv~~Av~~Il~-S-KtFDnGtICASEQSvivE~~n~  260 (528)
T TIGR02518       213 VGPGNGPAYIERTANVKKAVRKILD-S-KTFDNGTICASEQSVIVEKCNK  260 (528)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHC-C-CCCCCCEEEEECCCEEEECCCH
T ss_conf             1777860101156787899988740-2-5667761653135068615772


No 371
>PRK09148 aminotransferase; Validated
Probab=45.32  E-value=23  Score=15.92  Aligned_cols=15  Identities=13%  Similarity=0.264  Sum_probs=11.9

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             989999999987654
Q gi|254780268|r  391 NRKECMMRLNRALNE  405 (443)
Q Consensus       391 ~R~~Ai~~l~~aL~~  405 (443)
                      .-++|++|+.++|+.
T Consensus       377 ~L~eal~Rl~~~l~~  391 (406)
T PRK09148        377 RIRQAARNIKRFLSS  391 (406)
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             999999999999976


No 372
>PRK11636 mrcA peptidoglycan synthetase; Provisional
Probab=45.19  E-value=20  Score=16.22  Aligned_cols=81  Identities=16%  Similarity=0.282  Sum_probs=48.4

Q ss_pred             HHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHH-HH--CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             77664224433243334557999873200330122-00--0234578216888750668999998754321258998168
Q gi|254780268|r  120 KKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVL-VK--ASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVY  196 (443)
Q Consensus       120 k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPvi-iK--p~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vl  196 (443)
                      ..+.++.++|.+.-......+.+.+.++++|+|.- +.  ++-..|+-++    ++-|+..||.        .|.++.++
T Consensus       519 ~AL~~S~N~~aVrl~~~vG~~~~~~~~~~~Gi~~~~~~~~~slaLGs~~v----tplema~AYa--------tfAN~G~~  586 (850)
T PRK11636        519 QGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTESLALGSASF----TPMQVARGYA--------VMANGGFL  586 (850)
T ss_pred             HHHHHCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC----CHHHHHHHHH--------HHHCCCEE
T ss_conf             99984847999999998696999999998499855667663202576776----7999999999--------99739866


Q ss_pred             EEEEE-EEEEECCEEEEEECCCCCC
Q ss_conf             84434-2011033157773478702
Q gi|254780268|r  197 IEKYL-ENPRHIEVQIFGDGMGNAI  220 (443)
Q Consensus       197 vEk~i-~~~rhiEvqVl~D~~g~~v  220 (443)
                      ++.+. ..   |     -|.+|+++
T Consensus       587 ~~P~~I~k---I-----~D~~G~vi  603 (850)
T PRK11636        587 VDPYFISK---I-----ENDQGGVI  603 (850)
T ss_pred             CCCEEEEE---E-----ECCCCCEE
T ss_conf             16689999---9-----87999788


No 373
>PRK07064 hypothetical protein; Provisional
Probab=45.13  E-value=23  Score=15.90  Aligned_cols=32  Identities=25%  Similarity=0.132  Sum_probs=20.6

Q ss_pred             EEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             688875066899999875432125899816884
Q gi|254780268|r  166 MRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       166 i~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      ...+.+++++.+.+++|.+.+.+. ..++|+++
T Consensus       131 ~~~v~~~~~~~~~~~~A~~~a~~~-~~GPV~l~  162 (544)
T PRK07064        131 AFRVRSAETALPTIREAVRVALTA-PTGPVSVE  162 (544)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHCC-CCCCEEEE
T ss_conf             875599999999999999999608-99863886


No 374
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=44.80  E-value=23  Score=15.86  Aligned_cols=100  Identities=20%  Similarity=0.208  Sum_probs=51.9

Q ss_pred             CCEEEEEECCCHH------HHH-HHHHHHHCCCEEEEECCCHHHCCCC--HHHC----CEEEECCCCC-----CC--CHH
Q ss_conf             9706866447099------999-9998888096599985855771877--6758----5799918998-----53--000
Q gi|254780268|r    1 MISKILIANRGEI------ALR-ILRACKELGIPTVAVHSTADSGAMH--VRLA----DESVCIGPPS-----SK--DSY   60 (443)
Q Consensus         1 m~~~iLianrGei------a~r-iira~~elGi~tv~v~s~~D~~a~~--~~~A----De~~~i~~~~-----~~--~sY   60 (443)
                      |+|||.|.-.|=-      ++| ++|+++..|++.+.+|.-..-.-..  +.+.    |....-|+..     ..  ..-
T Consensus         1 ~~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssr~~~~~~~   80 (347)
T COG0205           1 MMKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKTE   80 (347)
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCCEECCHHHHHHHHHCCCEEEEECCCCCCCCH
T ss_conf             98369998468898307699999999999769789999433234207861214420146798659868754788876567


Q ss_pred             CCHHHHHHHHHHCCCCEEEC--CCCHHHCCHHHHHHHHHCC-CEEEC
Q ss_conf             69899999998709989945--8531310976668898459-21626
Q gi|254780268|r   61 LNIQQIVAACEVTGADAIHP--GYGFLSENAKFAEILEDHH-IKFIG  104 (443)
Q Consensus        61 ldi~~ii~~a~~~~~daihP--GyGfLsEn~~fa~~~e~~G-i~fIG  104 (443)
                      -..+.+++-.++.++|+++.  |=|=+    .=|..+.+.+ +++||
T Consensus        81 e~~~~~~~~l~~~gId~LvvIGGDGS~----~gA~~Lae~~~i~vVG  123 (347)
T COG0205          81 EGRKVAAENLKKLGIDALVVIGGDGSY----TGAALLAEEGGIPVVG  123 (347)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCHH----HHHHHHHHHCCCCEEE
T ss_conf             799999999998399889997888738----9999999735986896


No 375
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=44.68  E-value=23  Score=15.85  Aligned_cols=15  Identities=33%  Similarity=0.406  Sum_probs=8.9

Q ss_pred             CHHHHHHHHHCCCEE
Q ss_conf             976668898459216
Q gi|254780268|r   88 NAKFAEILEDHHIKF  102 (443)
Q Consensus        88 n~~fa~~~e~~Gi~f  102 (443)
                      |..+|+++++.|+.+
T Consensus        71 N~~LA~aA~~~gi~m   85 (326)
T cd02811          71 NRNLAEAAEELGIAM   85 (326)
T ss_pred             HHHHHHHHHHCCCCE
T ss_conf             999999999819977


No 376
>PRK08286 cbiC precorrin-8X methylmutase; Validated
Probab=44.57  E-value=11  Score=18.23  Aligned_cols=93  Identities=17%  Similarity=0.253  Sum_probs=41.5

Q ss_pred             HHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHH--HCCCEEECCCHHHHHHHHCHHHHHHH--HHHCCCCCCCCC
Q ss_conf             00698999999987099899458531310976668898--45921626898999872189988776--642244332433
Q gi|254780268|r   59 SYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILE--DHHIKFIGPSSEHIKIMGDKITAKKT--AQQLGIPVVPGS  134 (443)
Q Consensus        59 sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e--~~Gi~fIGPs~~ai~~~gDK~~~k~~--a~~~GVP~~p~~  134 (443)
                      +|++-+.+.+.|++.|..=-.         +.+-..++  ...|..||-.|.++-.+-+-+.....  +-=.|+|+  |.
T Consensus       101 C~i~d~~v~~~A~~~g~TRsa---------aam~~a~~~~~~aIvvIGNAPTAL~~Ll~li~~g~~~PaLVIG~PV--GF  169 (213)
T PRK08286        101 CYISDPRVVRAAKEQGITRSM---------AAVDIAAEEEGPKLFVFGNAPTALFRLLEMVESGQVTVDAVVGVPV--GF  169 (213)
T ss_pred             EECCCCCHHHHHHHCCCCHHH---------HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCC--CC
T ss_conf             975796355787743985899---------9999988766998899808779999999999848998755775585--54


Q ss_pred             CCCCHHHHHHHHHCCCCHHH-HHCCCCCCCC
Q ss_conf             34557999873200330122-0002345782
Q gi|254780268|r  135 GEVYPHTAMPIAKEIGFPVL-VKASAGGGGR  164 (443)
Q Consensus       135 ~~~~~~ea~~~a~~iGyPvi-iKp~~gGGG~  164 (443)
                        ....|.++...+.+.|.+ ++-..||+..
T Consensus       170 --V~A~ESKe~L~~~~vP~It~~GrkGGS~v  198 (213)
T PRK08286        170 --VGAAESKEALTESHIPAIAALGRKGGSNV  198 (213)
T ss_pred             --CCCHHHHHHHHHCCCCEEEEECCCCCHHH
T ss_conf             --57199999998689997997169874999


No 377
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=44.46  E-value=14  Score=17.31  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=13.4

Q ss_pred             CCCCEEEEECCCCCCEEEECCCCCC
Q ss_conf             2442158866899844677760238
Q gi|254780268|r  347 NPGEITYFHAPGGLGIRMDSASYQG  371 (443)
Q Consensus       347 s~G~i~~~~~p~~~gvRvDt~~~~G  371 (443)
                      -.|....=..+.|-|+|-|.+.-.+
T Consensus       351 ~vgSw~v~d~~cG~glReD~~lIt~  375 (387)
T COG0754         351 QVGSWVVGDEACGIGLREDRSLITK  375 (387)
T ss_pred             EEEEEEECCCCCEEEECCCCCEECC
T ss_conf             8778998751120466268740105


No 378
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=44.37  E-value=23  Score=15.82  Aligned_cols=50  Identities=20%  Similarity=0.261  Sum_probs=32.5

Q ss_pred             CCEEEEEECCCHHHH------HHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEE
Q ss_conf             970686644709999------99998888096599985855771877675857999
Q gi|254780268|r    1 MISKILIANRGEIAL------RILRACKELGIPTVAVHSTADSGAMHVRLADESVC   50 (443)
Q Consensus         1 m~~~iLianrGeia~------riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~   50 (443)
                      |-||||||+-.=||-      ++-+-|+|.||..-......-....+...+|-.+.
T Consensus         1 MkKkIlVACGsGIATSTvva~kv~~~~~e~gi~v~i~Q~~i~ev~~~~~~~Dlivt   56 (94)
T PRK10310          1 MKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICT   56 (94)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHCCCCCCEEEE
T ss_conf             99559998588375999999999999998598068999747875541689778999


No 379
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH; InterPro: IPR011909   Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system .    Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond.   Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed  that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro.    NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterised by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase .; GO: 0006118 electron transport, 0045454 cell redox homeostasis.
Probab=44.26  E-value=12  Score=17.87  Aligned_cols=39  Identities=28%  Similarity=0.386  Sum_probs=28.1

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC---HHHHHC
Q ss_conf             8877664224433243334557999873200330---122000
Q gi|254780268|r  118 TAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF---PVLVKA  157 (443)
Q Consensus       118 ~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGy---PviiKp  157 (443)
                      .+|+.+.+.|++ -.-.......|+.+...++||   |||.+-
T Consensus        14 mTKk~L~~~~i~-Fe~inid~~pea~d~vk~lGF~~~PVi~~~   55 (72)
T TIGR02194        14 MTKKALEEHGIA-FEEINIDEQPEAVDYVKALGFRQVPVIVAE   55 (72)
T ss_pred             HHHHHHHHCCCC-EEEEECCCCHHHHHHHHHCCCEECCEEEEC
T ss_conf             577667637996-157635888437899987486307626767


No 380
>PRK05858 hypothetical protein; Provisional
Probab=44.24  E-value=23  Score=15.80  Aligned_cols=34  Identities=24%  Similarity=0.262  Sum_probs=22.6

Q ss_pred             EEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             16888750668999998754321258998168844
Q gi|254780268|r  165 GMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEK  199 (443)
Q Consensus       165 Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk  199 (443)
                      -...+.+++++...+++|.+.|.+. ..++|+|+=
T Consensus       130 ~~~~v~~~~~~~~~l~~A~~~A~~~-~~GPV~l~i  163 (543)
T PRK05858        130 FAATAQSAENAGRLVDQALQAAVSA-HSGVVFVDF  163 (543)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf             5785599999999999999998628-997399993


No 381
>TIGR00021 rpiA ribose 5-phosphate isomerase A; InterPro: IPR004788 Ribose 5-phosphate isomerase (5.3.1.6 from EC), also known as phosphoriboisomerase, catalyses the conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt non-oxidative branch.
Probab=44.23  E-value=9.5  Score=18.58  Aligned_cols=57  Identities=25%  Similarity=0.454  Sum_probs=30.0

Q ss_pred             HHHHHHH-CCC-EEEC-CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH-H-HHH
Q ss_conf             6688984-592-1626-898999872189988776642244332433345579998732003301-2-200
Q gi|254780268|r   91 FAEILED-HHI-KFIG-PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFP-V-LVK  156 (443)
Q Consensus        91 fa~~~e~-~Gi-~fIG-Ps~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyP-v-iiK  156 (443)
                      +++.+.+ .++ .+.| |+++         +++++|+++|||...--.....+=+.+=|+++..| + +||
T Consensus        34 LG~~v~~Ge~l~~i~gVpTS~---------~t~~lA~~~GIpl~~l~~~~~lDltIDGADEvdl~~l~lIK   95 (236)
T TIGR00021        34 LGERVKQGEGLDNIVGVPTSK---------QTAELARELGIPLSSLDEVPELDLTIDGADEVDLPNLNLIK   95 (236)
T ss_pred             HHHHHHCCCCCCCCEEEECHH---------HHHHHHHHCCCEEECCCCCCEEEEEEECCCCCCCCCCCEEE
T ss_conf             998743677556435884838---------99999998298040225577200686063410303376431


No 382
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.17  E-value=23  Score=15.88  Aligned_cols=33  Identities=21%  Similarity=0.216  Sum_probs=27.1

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf             068664470999999998888096599985855
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAVHSTA   35 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v~s~~   35 (443)
                      |||+|.+=|-..+-+.|-+++.|.+.++...++
T Consensus        10 k~v~v~GlG~sG~s~a~~L~~~G~~V~~~D~~~   42 (457)
T PRK01390         10 KTVALFGLGGSGLATARALKAGGAEVIAWDDNP   42 (457)
T ss_pred             CEEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             989999436999999999997899799993992


No 383
>PRK09191 two-component response regulator; Provisional
Probab=44.12  E-value=24  Score=15.79  Aligned_cols=16  Identities=19%  Similarity=0.362  Sum_probs=9.1

Q ss_pred             ECHHHHHHHHHHHHHH
Q ss_conf             5066899999875432
Q gi|254780268|r  171 SENDLSEAIDQARSEA  186 (443)
Q Consensus       171 ~~~el~~a~~~a~~ea  186 (443)
                      +.+|..+.++.|..|-
T Consensus       117 ~~~e~~~l~~~A~~ei  132 (261)
T PRK09191        117 DPAEVAALLDDASREI  132 (261)
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             9999999999999999


No 384
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=44.12  E-value=24  Score=15.79  Aligned_cols=16  Identities=19%  Similarity=0.260  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHCCCCEE
Q ss_conf             8999999987099899
Q gi|254780268|r   63 IQQIVAACEVTGADAI   78 (443)
Q Consensus        63 i~~ii~~a~~~~~dai   78 (443)
                      +..+-++.++++.-.|
T Consensus        38 ~~~~k~~~r~~~L~TV   53 (306)
T COG0320          38 YQEIKEILRKNGLHTV   53 (306)
T ss_pred             HHHHHHHHHHCCCCEE
T ss_conf             8999999986698525


No 385
>COG3248 Tsx Nucleoside-binding outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=44.11  E-value=9.2  Score=18.69  Aligned_cols=22  Identities=32%  Similarity=0.683  Sum_probs=18.6

Q ss_pred             CEEEEECCCCCCCCCHHHHHHHCCCCH
Q ss_conf             349982276543320167886325620
Q gi|254780268|r  280 QFYFIEMNTRLQVEHPVTEAITGIDLV  306 (443)
Q Consensus       280 ~~yflEvN~Rlqveh~vte~~tgvdlv  306 (443)
                      .++|+|+-||+|.     .+.||.||-
T Consensus        97 ~~~fmei~PR~S~-----dklTgaDlS  118 (284)
T COG3248          97 HPLFMEIEPRFSI-----DKLTGADLS  118 (284)
T ss_pred             CCCEEEECCCEEE-----CCCCCCCCC
T ss_conf             7634885442020-----422266535


No 386
>PRK05868 hypothetical protein; Validated
Probab=44.00  E-value=24  Score=15.78  Aligned_cols=30  Identities=10%  Similarity=0.087  Sum_probs=27.7

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             706866447099999999888809659998
Q gi|254780268|r    2 ISKILIANRGEIALRILRACKELGIPTVAV   31 (443)
Q Consensus         2 ~~~iLianrGeia~riira~~elGi~tv~v   31 (443)
                      ||||||.+-|.-.+=....+++.|+++.++
T Consensus         1 ~~kVlIvGaGiAGlalA~~L~r~G~~VtV~   30 (372)
T PRK05868          1 MKTVLVSGASVAGTAAAYWLGRHGYSVTMV   30 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             999999898889999999998589988999


No 387
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=43.86  E-value=24  Score=15.76  Aligned_cols=43  Identities=21%  Similarity=0.328  Sum_probs=28.6

Q ss_pred             CCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             33012200023457821688875066899999875432125899816884
Q gi|254780268|r  149 IGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       149 iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      +..|=+.|-+.+-|.++. .|.+++||.++++.+.+.      +++++||
T Consensus       123 ~~~~d~~~~a~~~G~~~~-~v~~~~el~~al~~a~~~------~~p~li~  165 (168)
T cd00568         123 LSNPDFAALAEAYGAKGV-RVEDPEDLEAALAEALAA------GGPALIE  165 (168)
T ss_pred             CCCCCHHHHHHHCCCEEE-EECCHHHHHHHHHHHHHC------CCCEEEE
T ss_conf             888877899997498699-989999999999999838------9978999


No 388
>cd07047 BMC_PduB_repeat1 1,2-propanediol utilization protein B (PduB), Bacterial Micro-Compartment (BMC) domain repeat 1. PduB proteins are homologs of the carboxysome shell protein. They are encoded within the pdu operon and might be required for the formation of the outer shell of the bacterial pdu polyhedral organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol. Although it has been suggested that PduB might form hexamers and further assemble into the flat facets of the polyhedral outer shell of pdu organelles at present no experimental evidence directly supports this view. PduB proteins contain two tandem BMC domains repeats. This CD contains repeat 1 (the first BMC domain of PduB).
Probab=43.74  E-value=24  Score=15.75  Aligned_cols=66  Identities=32%  Similarity=0.486  Sum_probs=42.3

Q ss_pred             HHHHHHHHH----CCCCHHHHHCCCCCCCCEEEEE---EECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEE
Q ss_conf             799987320----0330122000234578216888---750668999998754321258998168844342011033157
Q gi|254780268|r  139 PHTAMPIAK----EIGFPVLVKASAGGGGRGMRIA---YSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQI  211 (443)
Q Consensus       139 ~~ea~~~a~----~iGyPviiKp~~gGGG~Gi~vv---~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqV  211 (443)
                      .+|+....+    +|-+|-   -..||+|.|.-++   ++..|.+.+++-|..+-...|||  |    |...+-|+|.|.
T Consensus        52 ~DEAVKatNtEvi~iElpR---DTkGgaGHG~lii~Ga~dvsD~rravevaL~~~~~~fgd--v----Y~~~aGHlE~qy  122 (134)
T cd07047          52 ADEAVKATNTEVISIELPR---DTKGGAGHGSLILFGAEDVSDVRRAVEVALSETEKTFGD--V----YGSEAGHIELQY  122 (134)
T ss_pred             HHHHHHHCCCEEEEEECCC---CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH--H----HCCCCCEEEEEE
T ss_conf             6677741474689998032---378987650499980686789999999999987877655--1----047776079998


Q ss_pred             EE
Q ss_conf             77
Q gi|254780268|r  212 FG  213 (443)
Q Consensus       212 l~  213 (443)
                      -.
T Consensus       123 Ta  124 (134)
T cd07047         123 TA  124 (134)
T ss_pred             EH
T ss_conf             11


No 389
>pfam03932 CutC CutC family. Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length are found in both eukaryotes and bacteria.
Probab=43.32  E-value=24  Score=15.71  Aligned_cols=73  Identities=26%  Similarity=0.427  Sum_probs=46.2

Q ss_pred             CHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf             98999999987099899458531310976668898459216268989998721899887766422443324333455799
Q gi|254780268|r   62 NIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHT  141 (443)
Q Consensus        62 di~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~e  141 (443)
                      +++..+ .|.+.|+|=|           +|+..+..-|++   ||...++.+         .+...              
T Consensus         9 s~~~a~-~A~~~GAdRI-----------ELCs~L~~GGlT---Ps~~~i~~~---------~~~~~--------------   50 (202)
T pfam03932         9 NIESLL-AAQAGGADRV-----------ELCANLAVGGLT---PSYGVIKSA---------AQRAK--------------   50 (202)
T ss_pred             CHHHHH-HHHHCCCCEE-----------EECCCCCCCCCC---CCHHHHHHH---------HHHCC--------------
T ss_conf             999999-9998499999-----------862676668979---899999999---------98659--------------


Q ss_pred             HHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf             98732003301220002345782168887506689999987543
Q gi|254780268|r  142 AMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSE  185 (443)
Q Consensus       142 a~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~e  185 (443)
                             +.-=+||+|..|      ..+++++|+....+.+...
T Consensus        51 -------ipv~vMIRPR~G------~F~Ys~~E~~~M~~dI~~~   81 (202)
T pfam03932        51 -------IPVYVMIRPRGG------DFVYSDHELKAMLEDILKA   81 (202)
T ss_pred             -------CCEEEEEECCCC------CCCCCHHHHHHHHHHHHHH
T ss_conf             -------974999842799------8864989999999999999


No 390
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=43.20  E-value=24  Score=15.70  Aligned_cols=75  Identities=4%  Similarity=0.051  Sum_probs=45.5

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCC--------CHHHCCEEEE-CCCCCCCCHHCCHHHHHHHHHHCCC
Q ss_conf             866447099999999888809659998585577187--------7675857999-1899853000698999999987099
Q gi|254780268|r    5 ILIANRGEIALRILRACKELGIPTVAVHSTADSGAM--------HVRLADESVC-IGPPSSKDSYLNIQQIVAACEVTGA   75 (443)
Q Consensus         5 iLianrGeia~riira~~elGi~tv~v~s~~D~~a~--------~~~~ADe~~~-i~~~~~~~sYldi~~ii~~a~~~~~   75 (443)
                      .++-++|.+. ++-..++++|.+.+.|.++.-....        ....+.-.+. ..+..+.-++-++++.++.+++.++
T Consensus        11 ~i~fG~g~~~-~l~~~~~~~G~k~~lvvt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~V~~nP~~~~v~~~~~~~r~~~~   89 (383)
T PRK09860         11 VNVIGADSLT-DAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNC   89 (383)
T ss_pred             CEEECCCHHH-HHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             1498838999-999999982998799982845665746999999998769958996895279699999999999987399


Q ss_pred             CEEEC
Q ss_conf             89945
Q gi|254780268|r   76 DAIHP   80 (443)
Q Consensus        76 daihP   80 (443)
                      |.|..
T Consensus        90 D~iva   94 (383)
T PRK09860         90 DSVIS   94 (383)
T ss_pred             CEEEE
T ss_conf             99999


No 391
>PRK13138 consensus
Probab=43.01  E-value=24  Score=15.68  Aligned_cols=220  Identities=15%  Similarity=0.155  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC-----CCCEEECCCC
Q ss_conf             99999999888809659998---585577187767585799918998530006989999999870-----9989945853
Q gi|254780268|r   12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT-----GADAIHPGYG   83 (443)
Q Consensus        12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~-----~~daihPGyG   83 (443)
                      |.-.++++++-+.|...+=+   +|||=..-+-.+.|.+.. |..+      .+.+.+++..++-     +.--|+=||-
T Consensus        27 e~t~~~~~~l~~~GadiiEiGiPFSDP~ADGPvIq~A~~rA-L~~G------~~~~~~~~~~~~ir~~~~~~pivlM~Y~   99 (264)
T PRK13138         27 DSCIIWADALIRGGAGILELGIPFSDPVADGPVIQKAFKRA-LAHP------FSMDKILEITAEIHKLHPEIPLVYLTYF   99 (264)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HHCC------CCHHHHHHHHHHHCCCCCCCCEEEEEEH
T ss_conf             99999999999779998997998888666589999999999-9779------9088974467760335898888975212


Q ss_pred             --HHHCC-HHHHHHHHHCCCE-EECCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHH-CCCCHHHH
Q ss_conf             --13109-7666889845921-62689--899987218998877664224433243334557999-87320-03301220
Q gi|254780268|r   84 --FLSEN-AKFAEILEDHHIK-FIGPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTA-MPIAK-EIGFPVLV  155 (443)
Q Consensus        84 --fLsEn-~~fa~~~e~~Gi~-fIGPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea-~~~a~-~iGyPvii  155 (443)
                        +++-. ..|++.|.++|+. +|=|.  .+.-    +-..++..+++.|+..++.....+.++. ...++ .-||=..+
T Consensus       100 N~i~~~G~e~F~~~~~~~GvdGlIipDLP~e~~----E~~~~~~~~~~~~i~~I~liaPtt~~~Ri~~i~~~s~gFiY~V  175 (264)
T PRK13138        100 NPLFSMGLEAFTERAKNSGIQGLIIPDLPFDTP----EAEEFFSQLERKKIDFIHLVTPATTEDRIQSMKSFASGFIYYV  175 (264)
T ss_pred             HHHHHHCHHHHHHHHHHCCCCEEECCCCCCCCH----HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             389884899999999876977585368986503----3599999999869986752179998999999997388808987


Q ss_pred             HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC-EEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             00234578216888750668999998754321258998168844342011033-15777347870236566542113562
Q gi|254780268|r  156 KASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE-VQIFGDGMGNAIHFGERDCSVQRRNQ  234 (443)
Q Consensus       156 Kp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE-vqVl~D~~g~~v~l~erdCSiQrr~q  234 (443)
                      --...-|.++    ...+++.+.+++.++..     +-++.+-==|..+.|+. +.-.+||    +.+|-.   +    -
T Consensus       176 s~~GvTG~~~----~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~~~~~~~~ADG----vIVGSa---i----v  235 (264)
T PRK13138        176 TSYGVTGERG----AIASGLEDRIQMVRKIV-----GLPVCAGFGISTADQAKEISTYADG----VIIGSA---V----Q  235 (264)
T ss_pred             ECCCCCCCCC----CCCHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHCCCE----EEECHH---H----H
T ss_conf             5456678765----55376999999999743-----8983886067989999999834999----998199---9----9


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             255403445588999999999999988651
Q gi|254780268|r  235 KIWEEAHSPVISAQDRTEIGETCVKAMKKI  264 (443)
Q Consensus       235 kiiEeaPap~l~~~~~~~i~~~A~~~~~~~  264 (443)
                      |+||+...+  .+...+++..++..+-.++
T Consensus       236 ~~i~~~~~~--~~~~~~~v~~~~~~lk~~~  263 (264)
T PRK13138        236 KIIEENGSD--RENCADKLFAYASEIRASM  263 (264)
T ss_pred             HHHHHCCCC--HHHHHHHHHHHHHHHHHHH
T ss_conf             999972787--7789999999999999963


No 392
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=42.99  E-value=24  Score=15.67  Aligned_cols=21  Identities=19%  Similarity=0.390  Sum_probs=12.8

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             999559989999999987654
Q gi|254780268|r  385 LIVHGKNRKECMMRLNRALNE  405 (443)
Q Consensus       385 iI~~g~~R~~Ai~~l~~aL~~  405 (443)
                      ++..+.|.++=++...+||.+
T Consensus       320 ~~~~~~~~~~F~~~i~~al~~  340 (373)
T cd04950         320 VVLIADDPEEFVAAIEKALLE  340 (373)
T ss_pred             EEEECCCHHHHHHHHHHHHHC
T ss_conf             799779999999999999843


No 393
>TIGR01027 proB glutamate 5-kinase; InterPro: IPR005715    L-glutamate 5-phosphotransferase, (gamma-glutamyl kinase, proB, 2.7.2.11 from EC), catalyzes the first step in proline biosynthesis  ATP + L-glutamate = ADP + L-glutamate 5-phosphate. the product of which rapidly cyclises to 5-oxoproline and phosphate.    Bacterial ProB proteins hits the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues. ; GO: 0004349 glutamate 5-kinase activity, 0006561 proline biosynthetic process, 0005737 cytoplasm.
Probab=42.88  E-value=25  Score=15.66  Aligned_cols=222  Identities=18%  Similarity=0.246  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHH---HHHCCCCEEECCCCHHHCCH-
Q ss_conf             99999988880965999858557718776758579991899853000698999999---98709989945853131097-
Q gi|254780268|r   14 ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAA---CEVTGADAIHPGYGFLSENA-   89 (443)
Q Consensus        14 a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~---a~~~~~daihPGyGfLsEn~-   89 (443)
                      |.+-+.+|.++|+=.|.  .+-|+.|.      +-+.+|.++....+  +..++++   ..-+.+|+++      .+|| 
T Consensus       117 Ar~TL~~Ll~~gvvPIi--NENDTVav------eEi~fGDND~LSAl--vA~Lv~AD~L~LLTD~dGLY------d~dPR  180 (379)
T TIGR01027       117 ARNTLEALLELGVVPII--NENDTVAV------EEIKFGDNDTLSAL--VAILVGADLLVLLTDVDGLY------DADPR  180 (379)
T ss_pred             HHHHHHHHHHCCCEEEE--ECCCCEEE------EEEEECCCCHHHHH--HHHHHHHHHHHHHCCCCCCC------CCCCC
T ss_conf             99999999865947898--67742244------00054678169999--99999752897761755330------68745


Q ss_pred             -----HHHHHHHHCC---CEEECCC-HHH-HHH--HHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHC
Q ss_conf             -----6668898459---2162689-899-987--218998877664224433243334557999873200330122000
Q gi|254780268|r   90 -----KFAEILEDHH---IKFIGPS-SEH-IKI--MGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKA  157 (443)
Q Consensus        90 -----~fa~~~e~~G---i~fIGPs-~~a-i~~--~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp  157 (443)
                           .|-..+++-.   ...=|-| ... +-+  |..|+.+=++|.++||||+=.. ...++.+.++.+.+ |      
T Consensus       181 ~nPdA~~I~~V~~~~~~~~~~aG~S~g~~~~GTGGM~sK~~AA~~A~~~Gv~v~i~~-g~~P~~i~~~~~hh-f------  252 (379)
T TIGR01027       181 TNPDAKLIPVVEEITDLLLGVAGDSSGSSKVGTGGMRSKIEAARLATRAGVPVIIAS-GSKPEKIADALEHH-F------  252 (379)
T ss_pred             CCCCCEECCCCCCCCHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHHHHHHHHH-C------
T ss_conf             378514534124533234111146677887566467899999999986899589944-88978999999974-0------


Q ss_pred             CCCCCCCEEEEEEE-CHH-HHHHHHHHHHHHHCCCCCCCEEEEEEEEEE-EECC--------EEEEEE-CCCCCCCCCCC
Q ss_conf             23457821688875-066-899999875432125899816884434201-1033--------157773-47870236566
Q gi|254780268|r  158 SAGGGGRGMRIAYS-END-LSEAIDQARSEALAAFGNDAVYIEKYLENP-RHIE--------VQIFGD-GMGNAIHFGER  225 (443)
Q Consensus       158 ~~gGGG~Gi~vv~~-~~e-l~~a~~~a~~ea~~~fgd~~vlvEk~i~~~-rhiE--------vqVl~D-~~g~~v~l~er  225 (443)
                        -|-..|-.+.-. ... |+..=.+....+..   .+.|+|++==+.+ ++=-        ++|-|+ ..|.+|-+   
T Consensus       253 --yg~~~GT~F~a~~~~~~L~~rk~Wi~~~~~~---~G~i~vD~GA~~Al~~~G~SLLp~Gi~~V~G~F~~GdvV~i---  324 (379)
T TIGR01027       253 --YGAPVGTVFEAQEARRKLRARKQWIAFASEP---KGKITVDAGAEEALKERGKSLLPAGIVEVEGNFSRGDVVEI---  324 (379)
T ss_pred             --CCCCCCCEECCCCCCHHHHHHHHHHHHCCCC---CCEEEECHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEE---
T ss_conf             --3778774433577650267899999843776---74688752589999837871143113666201476456986---


Q ss_pred             CCCCCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             542113562--25540344558899999999999998865154341
Q gi|254780268|r  226 DCSVQRRNQ--KIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGA  269 (443)
Q Consensus       226 dCSiQrr~q--kiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~  269 (443)
                       |+ ||--+  ..|=-.-.-+=++++++-....+..+-..|||.+-
T Consensus       325 -~~-qrl~~G~~~iG~G~v~Y~S~eL~~i~G~~s~ei~~~LgY~~~  368 (379)
T TIGR01027       325 -LN-QRLPEGKQLIGRGLVNYSSDELEKIKGLKSSEIEAVLGYEYG  368 (379)
T ss_pred             -EC-CCCCCCCCEECCCCCCCCHHHHHHHHCCCCHHHHHHCCCCCC
T ss_conf             -12-534012620101024569899999846771365764088898


No 394
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=42.87  E-value=4.1  Score=21.18  Aligned_cols=56  Identities=27%  Similarity=0.272  Sum_probs=34.0

Q ss_pred             CCEEEECC--CCCCCEECCCCCCC----EEEEEEECCCH-HHHHHHHHHHHH-HCE-ECCCCCCH
Q ss_conf             84467776--02387707776843----38999955998-999999998765-408-82637788
Q gi|254780268|r  360 LGIRMDSA--SYQGYTVPSYYDSL----IAKLIVHGKNR-KECMMRLNRALN-EII-IDGIKTTI  415 (443)
Q Consensus       360 ~gvRvDt~--~~~G~~i~~~yDsm----laKiI~~g~~R-~~Ai~~l~~aL~-~~~-I~Gv~TN~  415 (443)
                      .|||+|||  .+....+--.||.+    ..|+|+.+.+- ++.+..+.+..+ ... .-||-||+
T Consensus       275 ~GVRlDSGDl~~~~~~~r~~~d~~G~~~~~k~iv~S~~LDe~~i~~l~~~~~~~~~~~fGIGT~L  339 (377)
T cd01401         275 DGVRHDSGDPFEWGEKAIAHYEKLGIDPKTKTLVFSDGLDVEKALELYEYFKGRIKVSFGIGTNL  339 (377)
T ss_pred             CEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEECCCCC
T ss_conf             78853786789999999999997798957628999189899999999998648986489858676


No 395
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=42.84  E-value=25  Score=15.66  Aligned_cols=18  Identities=22%  Similarity=0.497  Sum_probs=11.0

Q ss_pred             ECCCHHHHHHHHHHHHHH
Q ss_conf             559989999999987654
Q gi|254780268|r  388 HGKNRKECMMRLNRALNE  405 (443)
Q Consensus       388 ~g~~R~~Ai~~l~~aL~~  405 (443)
                      .+.+.++++.+|.+.|-.
T Consensus       362 ~~~~~~e~ie~l~~~i~n  379 (414)
T PRK13940        362 NGKDAEEIIKRFAYEIKK  379 (414)
T ss_pred             CCCCHHHHHHHHHHHHHH
T ss_conf             999899999999999999


No 396
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=42.83  E-value=25  Score=15.66  Aligned_cols=33  Identities=9%  Similarity=0.107  Sum_probs=21.6

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             21688875066899999875432125899816884
Q gi|254780268|r  164 RGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       164 ~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      +-...+.+++++...+++|.+.+..  ..++++++
T Consensus       126 k~~~~v~~~~~~~~~~~~A~r~A~~--~~Gpv~l~  158 (574)
T PRK09124        126 HYCELVSNPEQLPRVLAIAMRAAIL--NRGVAVVV  158 (574)
T ss_pred             HHEEEECCHHHHHHHHHHHHHHHHC--CCCCEEEE
T ss_conf             2032406765649999999999857--99962785


No 397
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=42.82  E-value=25  Score=15.66  Aligned_cols=77  Identities=23%  Similarity=0.258  Sum_probs=35.8

Q ss_pred             EEEEECCCHHH-----HHHHHHHHHCCCEEEEECCCHHHCCCC-HHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCE
Q ss_conf             68664470999-----999998888096599985855771877-675857999189985300069899999998709989
Q gi|254780268|r    4 KILIANRGEIA-----LRILRACKELGIPTVAVHSTADSGAMH-VRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADA   77 (443)
Q Consensus         4 ~iLianrGeia-----~riira~~elGi~tv~v~s~~D~~a~~-~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~da   77 (443)
                      --||.++..+.     .+.+..+-+.|+..+-+ -+.+..... ...|-+...+......  -+=++.=+++|.+.++|+
T Consensus         8 lylvt~~~~~~~~~~~~~~ve~al~~Gv~~vQl-R~K~~~~~~~~~~a~~~~~lc~~~~v--~liINd~~dlA~~~~AdG   84 (211)
T COG0352           8 LYLVTDRPLIYDGVDLLEWVEAALKGGVTAVQL-REKDLSDEEYLALAEKLRALCQKYGV--PLIINDRVDLALAVGADG   84 (211)
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEE-ECCCCCHHHHHHHHHHHHHHHHHHCC--EEEECCCHHHHHHCCCCE
T ss_conf             589817755664110699999999679949998-02898749999999999999998198--099668399997679988


Q ss_pred             EECCCC
Q ss_conf             945853
Q gi|254780268|r   78 IHPGYG   83 (443)
Q Consensus        78 ihPGyG   83 (443)
                      ||-|+.
T Consensus        85 VHlGq~   90 (211)
T COG0352          85 VHLGQD   90 (211)
T ss_pred             EEECCC
T ss_conf             970876


No 398
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=42.52  E-value=25  Score=15.62  Aligned_cols=36  Identities=22%  Similarity=0.387  Sum_probs=30.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCC
Q ss_conf             6866447099999999888809659998585577187
Q gi|254780268|r    4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAM   40 (443)
Q Consensus         4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~   40 (443)
                      ||||.+-|-+.+.+++.+-.+|+..+.+ .|.|....
T Consensus         1 KVlvvGaGglGce~~k~La~~Gvg~i~i-iD~D~Ie~   36 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHV-IDMDTIDV   36 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEE-ECCCEECC
T ss_conf             9899948887999999999839986999-75990056


No 399
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=42.33  E-value=25  Score=15.61  Aligned_cols=20  Identities=15%  Similarity=0.300  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHCCCEEEEECCC
Q ss_conf             999999888809659998585
Q gi|254780268|r   14 ALRILRACKELGIPTVAVHST   34 (443)
Q Consensus        14 a~riira~~elGi~tv~v~s~   34 (443)
                      +...++.+++.|+..++| ||
T Consensus        34 ~~~al~~l~~~g~~~~iv-TN   53 (181)
T PRK08942         34 SIEAIARLKQAGYRVVVA-TN   53 (181)
T ss_pred             HHHHHHHHHHCCCEEEEE-EC
T ss_conf             899999999879969999-58


No 400
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=42.23  E-value=25  Score=15.60  Aligned_cols=144  Identities=21%  Similarity=0.212  Sum_probs=62.5

Q ss_pred             HHHHHHHHHCCCEEEEECCCHHHCCCCHHH-CC----EEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE--ECCCCHHHC
Q ss_conf             999998888096599985855771877675-85----79991899853000698999999987099899--458531310
Q gi|254780268|r   15 LRILRACKELGIPTVAVHSTADSGAMHVRL-AD----ESVCIGPPSSKDSYLNIQQIVAACEVTGADAI--HPGYGFLSE   87 (443)
Q Consensus        15 ~riira~~elGi~tv~v~s~~D~~a~~~~~-AD----e~~~i~~~~~~~sYldi~~ii~~a~~~~~dai--hPGyGfLsE   87 (443)
                      .+.++.+.+.|...|+++.  ......... .+    -...++-+....+.-..-.-.+-|.+.|+|.|  ..-||.+.+
T Consensus        16 ~~~~~~a~~~~~~av~v~p--~~v~~~~~~l~~~~~~v~~vv~fp~g~~~~~~k~~e~~~ai~~GAdeid~v~~~~~~~~   93 (201)
T cd00945          16 AKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKE   93 (201)
T ss_pred             HHHHHHHHHHCCCEEEECH--HHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHC
T ss_conf             9999999862982999889--99999999808999838999588999997779999999999909998997405677756


Q ss_pred             -C-----HHHHHHHH--HCCCEEEC-CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC-----CCHHHHHHHHHCCCCHH
Q ss_conf             -9-----76668898--45921626-89899987218998877664224433243334-----55799987320033012
Q gi|254780268|r   88 -N-----AKFAEILE--DHHIKFIG-PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE-----VYPHTAMPIAKEIGFPV  153 (443)
Q Consensus        88 -n-----~~fa~~~e--~~Gi~fIG-Ps~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~-----~~~~ea~~~a~~iGyPv  153 (443)
                       +     .++.+.++  +.|++..- .-+..+....-+..+-+++.++|.--+.-+..     .+.+......+.++.++
T Consensus        94 ~~~~~~~~ei~~v~~~~~~g~~~kvi~e~~~l~~~~~i~~a~~~~~~~GadfvKtstG~~~~~at~~~v~~m~~~~~~~~  173 (201)
T cd00945          94 GDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRV  173 (201)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             68899999999999973579837999616778999999999999998099879855887889899999999999828786


Q ss_pred             HHHCCCC
Q ss_conf             2000234
Q gi|254780268|r  154 LVKASAG  160 (443)
Q Consensus       154 iiKp~~g  160 (443)
                      -||++.|
T Consensus       174 ~vk~sGG  180 (201)
T cd00945         174 GVKAAGG  180 (201)
T ss_pred             EEECCCC
T ss_conf             3863589


No 401
>PRK00124 hypothetical protein; Validated
Probab=42.19  E-value=25  Score=15.59  Aligned_cols=129  Identities=16%  Similarity=0.185  Sum_probs=63.4

Q ss_pred             EEEE-ECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCC-CCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf             6866-447099999999888809659998585577187767585799918998-53000698999999987099899458
Q gi|254780268|r    4 KILI-ANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPS-SKDSYLNIQQIVAACEVTGADAIHPG   81 (443)
Q Consensus         4 ~iLi-anrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~-~~~sYldi~~ii~~a~~~~~daihPG   81 (443)
                      ||+| |..=++--.++|+|++.+++++.|.+ -....+.-... +.+.++.+. ..+-|     |++  .-..-|-|-  
T Consensus         2 kI~VDADACPVk~~i~~~a~r~~i~v~~Van-~~~~~~~~~~i-~~v~V~~g~DaAD~~-----I~~--~~~~gDiVI--   70 (149)
T PRK00124          2 KIYVDADACPVKEIIYRVAERHGIPVTLVAN-HFLRVPYSPFI-RTLYVDSGFDAADNE-----IVE--RAEKGDIVI--   70 (149)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHCCEEEEEEC-CCCCCCCCCCE-EEEEECCCCCHHHHH-----HHH--HCCCCCEEE--
T ss_conf             7999888894099999999986976999968-97069998764-899989997639999-----998--388999999--


Q ss_pred             CCHHHCCHHHHHHHHHCCCEEECCC-----HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             5313109766688984592162689-----899987218998877664224433243334557999873200
Q gi|254780268|r   82 YGFLSENAKFAEILEDHHIKFIGPS-----SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKE  148 (443)
Q Consensus        82 yGfLsEn~~fa~~~e~~Gi~fIGPs-----~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~  148 (443)
                          .-+--+|..|-+.|...|.|+     .+.|..+-..-.+.+-+++.|.-+ .|-..-+.++-..|++.
T Consensus        71 ----T~DipLAa~~l~Kga~vi~prG~~yt~~NI~~~L~~R~~~~~lR~~G~~t-~Gp~~f~~~Dr~~F~~~  137 (149)
T PRK00124         71 ----TQDYPLAAEALEKGAIVLNPRGEIYTNDNIDMLLAMRDLMATLRRSGGRT-GGPKPFTPEDRSRFEAE  137 (149)
T ss_pred             ----ECCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHH
T ss_conf             ----69889999999879899999986898878999999888889999739989-99999999999999999


No 402
>PRK08617 acetolactate synthase; Reviewed
Probab=42.13  E-value=25  Score=15.58  Aligned_cols=34  Identities=18%  Similarity=0.189  Sum_probs=22.2

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             21688875066899999875432125899816884
Q gi|254780268|r  164 RGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       164 ~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      |-...+.+++++.+.+++|.+.|... .-++|+++
T Consensus       127 k~s~~v~~~~~~~~~l~~A~~~A~~~-~~GPV~l~  160 (552)
T PRK08617        127 KYSAEVQDPDNLSEVLANAFRAAESG-KPGAAFVS  160 (552)
T ss_pred             EEEEEECCHHHHHHHHHHHHHHHHCC-CCCEEEEE
T ss_conf             00699677899899999999998618-99629998


No 403
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=41.98  E-value=25  Score=15.57  Aligned_cols=40  Identities=13%  Similarity=0.072  Sum_probs=24.0

Q ss_pred             HHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCH
Q ss_conf             999998709989945853131097666889845921626898
Q gi|254780268|r   66 IVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSS  107 (443)
Q Consensus        66 ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~  107 (443)
                      .-++..+.++.+|.+ |+= +.....+..+++.++++|.|+.
T Consensus        59 a~kLi~~d~V~~i~g-~~s-~~~~A~~~~~~~~~vp~i~~~~   98 (351)
T cd06334          59 YERLKGEDGAVAFQG-WST-GITEALIPKIAADKIPLMSGSY   98 (351)
T ss_pred             HHHHHHCCCEEEECC-CCC-HHHHHHHHHHHHHCCCEEECCC
T ss_conf             999985398266568-886-7899999999981992895246


No 404
>TIGR02024 FtcD glutamate formiminotransferase; InterPro: IPR004227   This entry represents the formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD), which forms a homodimer, with each protomer being comprised of two subdomains. Tetrahydrofolate (THF)-dependent glutamate formiminotransferase is involved in the histidine utilization pathway. This enzyme interconverts L-glutamate and N-formimino-L-glutamate. The enzyme is bifunctional as it also catalyzes the cyclodeaminase reaction on N-formimino-THF, converting it to 5,10-methenyl-THF and releasing ammonia; part of the process of regenerating THF. This model covers enzymes from metazoa as well as Gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype . The crystal structure of the enzyme has been studied in the context of the catalytic mechanism . ; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process.
Probab=41.96  E-value=25  Score=15.57  Aligned_cols=150  Identities=23%  Similarity=0.313  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHC-CCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC-------CCCEEECCCC
Q ss_conf             9999999988880-9659998585577187767585799918998530006989999999870-------9989945853
Q gi|254780268|r   12 EIALRILRACKEL-GIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT-------GADAIHPGYG   83 (443)
Q Consensus        12 eia~riira~~el-Gi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~-------~~daihPGyG   83 (443)
                      |+-=+|..++++. +++-+=+-+|+|.|=+    =  .-++|++.   .-  +++++..||..       +..+=||=.|
T Consensus        18 e~ie~I~~~~~~~~~v~~LD~~~d~dHNRs----V--~T~vG~Pe---~v--~~A~~~~aK~A~eLIDm~~H~G~HPRMG   86 (331)
T TIGR02024        18 EVIEKIVDAIKKVDNVKILDVDSDPDHNRS----V--ITFVGEPE---KV--VNAALKLAKKAAELIDMRNHKGEHPRMG   86 (331)
T ss_pred             HHHHHHHHHHHCCCCEEEEEEECCCCCCCE----E--EEEECCHH---HH--HHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             688988998631796589986477799866----8--99865858---99--9999998878676530014787779524


Q ss_pred             HHHCCHHHHHHHHHCCCEEECC-----CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHH-------------HHHHH
Q ss_conf             1310976668898459216268-----98999872189988776642244332433345579-------------99873
Q gi|254780268|r   84 FLSENAKFAEILEDHHIKFIGP-----SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPH-------------TAMPI  145 (443)
Q Consensus        84 fLsEn~~fa~~~e~~Gi~fIGP-----s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~-------------ea~~~  145 (443)
                      .+-            =++|| |     .-++++.  -|..=|++.+++||||-=+......+             +-..+
T Consensus        87 A~D------------ViPF~-Pv~~~~~EECV~~--A~~~Gkr~GEELGvPVYLYe~AA~~p~R~~La~IRkGnfqYE~l  151 (331)
T TIGR02024        87 AVD------------VIPFI-PVKDVTMEECVEL--AKELGKRLGEELGVPVYLYEEAATRPERQTLAAIRKGNFQYEAL  151 (331)
T ss_pred             CEE------------ECCCC-CCCCCCHHHHHHH--HHHHHHHHHHHCCCCEEECHHHCCCCCCCCCHHHHCCCCCHHHH
T ss_conf             410------------00531-3789848999999--99861585664588532225454885114617782776510233


Q ss_pred             HHCC---C-----CHHHHHCCCCCCCCEEEE---E------EECHHHHHHHHHHHHHHH
Q ss_conf             2003---3-----012200023457821688---8------750668999998754321
Q gi|254780268|r  146 AKEI---G-----FPVLVKASAGGGGRGMRI---A------YSENDLSEAIDQARSEAL  187 (443)
Q Consensus       146 a~~i---G-----yPviiKp~~gGGG~Gi~v---v------~~~~el~~a~~~a~~ea~  187 (443)
                      .++|   -     -|--+.|..|+.=.|-|.   +      ...-|..+.+.++.+.+.
T Consensus       152 ~eKiK~~~WkPDfGP~~~~Pk~G~Ta~GAR~fLiAFNvNL~t~n~Eia~kIA~~~R~~~  210 (331)
T TIGR02024       152 FEKIKDPKWKPDFGPSEVNPKAGATAVGARKFLIAFNVNLGTSNLEIAKKIAKAVRFKG  210 (331)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf             88616755778898871365356347602534044440478763379999999842126


No 405
>PRK13135 consensus
Probab=41.78  E-value=25  Score=15.55  Aligned_cols=214  Identities=16%  Similarity=0.216  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC----CCCEEECCCC--
Q ss_conf             9999999888809659998---585577187767585799918998530006989999999870----9989945853--
Q gi|254780268|r   13 IALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT----GADAIHPGYG--   83 (443)
Q Consensus        13 ia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~----~~daihPGyG--   83 (443)
                      .-.++++++.+.|...|=+   +|||=..-+-.+.|.+.- |.      +=.+.+.+++..++.    +.--|.=||-  
T Consensus        32 ~s~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rA-L~------~G~~~~~~~~~~~~~r~~~~~PivlM~Y~N~  104 (267)
T PRK13135         32 TTEALIPLLAESGADIIELGVPFSDPMADGPTIQLSSERA-LA------AGTTLPRILAMVRSVRRRCQVPIVLMGYYNP  104 (267)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHHHCCCCCCEEEEECCHH
T ss_conf             9999999999759999997899898666589999999999-97------6984999999999863358998899842309


Q ss_pred             HHHCC-HHHHHHHHHCCCE-EECCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHH-CCCCHHH--H
Q ss_conf             13109-7666889845921-62689--89998721899887766422443324333455799987-320-0330122--0
Q gi|254780268|r   84 FLSEN-AKFAEILEDHHIK-FIGPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMP-IAK-EIGFPVL--V  155 (443)
Q Consensus        84 fLsEn-~~fa~~~e~~Gi~-fIGPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~-~a~-~iGyPvi--i  155 (443)
                      ++.-. ..|++.|.++|+. +|=|.  ++      .-...+..+++.|+..++.....+.++... +++ .=||=..  +
T Consensus       105 i~~yG~e~F~~~~~~~GvdGlIipDLP~e------e~~~~~~~~~~~~l~~I~lvsPtt~~~Ri~~i~~~s~GFiY~Vs~  178 (267)
T PRK13135        105 IFAYGLERFAADAAAAGVDGVLLVDLPPE------EAEEFKACADRHGLDVIFLLTPTSDESRIRTVARLGRGFVYYVSV  178 (267)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEECCCCCHH------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEC
T ss_conf             98846899999999749974763789978------889999999872961899808989579999999618981899854


Q ss_pred             HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC-EEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             00234578216888750668999998754321258998168844342011033-15777347870236566542113562
Q gi|254780268|r  156 KASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE-VQIFGDGMGNAIHFGERDCSVQRRNQ  234 (443)
Q Consensus       156 Kp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE-vqVl~D~~g~~v~l~erdCSiQrr~q  234 (443)
                      +.+-|     .+- ...+++.+.+.+.++..     +-++.+-==|..+.|+. +.-.+|    .+.+|-.   +    -
T Consensus       179 ~GvTG-----~~~-~~~~~~~~~i~~ik~~t-----~~Pv~vGFGI~~~e~v~~i~~~AD----GvIVGSa---i----V  236 (267)
T PRK13135        179 TGVTG-----ARS-GVEATVGGNVAKIREKI-----TVPVVVGFGISTPQQAADVAAMAD----GVVVGSA---L----V  236 (267)
T ss_pred             CCCCC-----CCC-CCHHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHCCCC----EEEECHH---H----H
T ss_conf             56667-----764-44488999999998606-----898489816799999999980599----9998789---9----9


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             2554034455889999999999999886515
Q gi|254780268|r  235 KIWEEAHSPVISAQDRTEIGETCVKAMKKID  265 (443)
Q Consensus       235 kiiEeaPap~l~~~~~~~i~~~A~~~~~~~g  265 (443)
                      |+||+.+    .++..+++.++...+-+++.
T Consensus       237 k~ie~~~----~~~~~~~i~~fv~~lk~ai~  263 (267)
T PRK13135        237 KLFELHR----GEELRQEVATFVASLRQAIP  263 (267)
T ss_pred             HHHHHCC----CHHHHHHHHHHHHHHHHHHH
T ss_conf             9998608----18789999999999999975


No 406
>TIGR00624 tag DNA-3-methyladenine glycosylase I; InterPro: IPR004597   One common form of damage to DNA occurs when alkyl groups become covalently linked to DNA, leading to the formation of mutagenic or toxic lesions. Alkylating agents are ubiquitous in the environment and can also exist endogenously; for example S-adenosylmethionine, a commonly used methyl donor in many cellualr pathways, can produce methylation damage. Given the prevalence of alkylating agents it is not surprising that all cellular organisms studied so far have developed repair systems to deal with DNA alkylation .   DNA-3-methyladenine glycosylase I (also known as TagI) is part of the broader helix-hairpin-helix DNA repair glycosylase supefamily. It specifically catalyses the release of 3-methylated adenine and, to a lesser extent, guanosine bases from DNA by hydrolysis of the deoxyribose N-glycosidic bond , . A phylogenomic study suggests that TagI evolved in, and is specific to, the bacteria .; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair.
Probab=41.76  E-value=11  Score=18.25  Aligned_cols=66  Identities=12%  Similarity=0.131  Sum_probs=44.8

Q ss_pred             HHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHH
Q ss_conf             84592162689899987218998877664224433243334557999873200330122000234578216888750668
Q gi|254780268|r   96 EDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDL  175 (443)
Q Consensus        96 e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el  175 (443)
                      -++||.||       -.+.-+..+|+.+....|.-+.-+...+.++++.-.                    .||+|.--+
T Consensus        43 fQaGLSWi-------~vLrKREnyR~~f~~FD~~~vA~~~~~dv~rL~~D~--------------------GIiRnR~Ki   95 (185)
T TIGR00624        43 FQAGLSWI-------TVLRKRENYRRAFSQFDIQKVARMTDADVERLLLDD--------------------GIIRNRLKI   95 (185)
T ss_pred             HHHHHHHH-------HHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHCCC--------------------CEECCCHHH
T ss_conf             87568999-------998744789998721787898601577799973288--------------------801001889


Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             9999987543212
Q gi|254780268|r  176 SEAIDQARSEALA  188 (443)
Q Consensus       176 ~~a~~~a~~ea~~  188 (443)
                      ++++..|+..+.-
T Consensus        96 ~A~i~NArA~l~l  108 (185)
T TIGR00624        96 EATIANARAALAL  108 (185)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999985


No 407
>PRK05920 aromatic acid decarboxylase; Validated
Probab=41.75  E-value=25  Score=15.55  Aligned_cols=38  Identities=21%  Similarity=0.245  Sum_probs=29.9

Q ss_pred             CCEEEEEECCCH----HHHHHHHHHHHCCCEEEEECCCHHHC
Q ss_conf             970686644709----99999998888096599985855771
Q gi|254780268|r    1 MISKILIANRGE----IALRILRACKELGIPTVAVHSTADSG   38 (443)
Q Consensus         1 m~~~iLianrGe----ia~riira~~elGi~tv~v~s~~D~~   38 (443)
                      +||||.|+=-|-    .|+|.++.+++.|+++-+|.|+....
T Consensus         3 ~mkrivvgITGASG~~ya~rll~~L~~~~~ev~lviS~~a~~   44 (205)
T PRK05920          3 KMKRIVLAITGASGAIYGVRLLECLLAADYEVHLVISKAARK   44 (205)
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECHHHHH
T ss_conf             887599998654279999999999986799899998678999


No 408
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=41.45  E-value=26  Score=15.51  Aligned_cols=31  Identities=16%  Similarity=0.187  Sum_probs=18.2

Q ss_pred             EEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             88875066899999875432125899816884
Q gi|254780268|r  167 RIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       167 ~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      ..+.+++++.+.+++|.+.+.+. .-++|++|
T Consensus       130 ~~v~~~~~i~~~l~~A~~~A~~~-r~GPV~l~  160 (574)
T PRK06466        130 FMVKHASEIPEVIKKAFYIAQSG-RPGPVVVD  160 (574)
T ss_pred             EEECCHHHHHHHHHHHHHHHHHC-CCCCEEEC
T ss_conf             34089999999999999998767-99626953


No 409
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=41.44  E-value=26  Score=15.53  Aligned_cols=56  Identities=27%  Similarity=0.463  Sum_probs=30.2

Q ss_pred             EEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf             66447099999999888809659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r    6 LIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY   82 (443)
Q Consensus         6 LianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy   82 (443)
                      ||.+||--.    +++..||+..--++..|...+.    .++.           |.-.++++.  +.+|+++||||-
T Consensus       336 lIiGr~Lt~----kar~~Lgl~~s~~F~~p~~~~~----~~~G-----------~TlaqKmvg--kAcG~~gv~pG~  391 (841)
T PRK09238        336 LIIGRGLTT----KAREALGLPPSDVFRRPKQPAD----SGKG-----------FTLAQKMVG--RACGVPGVRPGT  391 (841)
T ss_pred             EEECHHHHH----HHHHHCCCCHHHHCCCCCCCCC----CCCC-----------EEHHHHHHH--HHCCCCCCCCCC
T ss_conf             996345559----9999809991763478878887----8875-----------139999988--733998767787


No 410
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=41.38  E-value=21  Score=16.12  Aligned_cols=15  Identities=27%  Similarity=0.492  Sum_probs=5.9

Q ss_pred             HHHHHHCCCCHHHHH
Q ss_conf             987320033012200
Q gi|254780268|r  142 AMPIAKEIGFPVLVK  156 (443)
Q Consensus       142 a~~~a~~iGyPviiK  156 (443)
                      ..++-+.+.-|||-|
T Consensus        69 i~eim~aVsIPVMAK   83 (296)
T COG0214          69 IEEIMDAVSIPVMAK   83 (296)
T ss_pred             HHHHHHHCCCCEEEE
T ss_conf             999997534200245


No 411
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=41.35  E-value=26  Score=15.50  Aligned_cols=29  Identities=21%  Similarity=0.195  Sum_probs=18.2

Q ss_pred             HHHHCCCCC-CCCCCCCCCCEEEEECCCCC
Q ss_conf             533024566-22111124421588668998
Q gi|254780268|r  332 IECRINAED-PENFIPNPGEITYFHAPGGL  360 (443)
Q Consensus       332 ie~Ri~aEd-p~~f~Ps~G~i~~~~~p~~~  360 (443)
                      +-.|+++-. +++..+-+|-+++.....|+
T Consensus       430 vdlR~f~~~~~~~~~v~pGGLtRVal~~gs  459 (488)
T COG2308         430 VDLRPFALADRDGVQVMPGGLTRVALREGS  459 (488)
T ss_pred             CCCEEEEEECCCCEEECCCCEEEEEECCCC
T ss_conf             452468997588649733613456633785


No 412
>PTZ00124 adenosine deaminase; Provisional
Probab=41.27  E-value=26  Score=15.49  Aligned_cols=16  Identities=0%  Similarity=0.092  Sum_probs=11.1

Q ss_pred             CCHHHHHHHHHHCCCC
Q ss_conf             6989999999870998
Q gi|254780268|r   61 LNIQQIVAACEVTGAD   76 (443)
Q Consensus        61 ldi~~ii~~a~~~~~d   76 (443)
                      +..+-++++|++++++
T Consensus        48 lrp~tl~eLA~~~~i~   63 (362)
T PTZ00124         48 FSVDFFIDIIRKYNEQ   63 (362)
T ss_pred             CCHHHHHHHHHHHCCC
T ss_conf             8999999999981989


No 413
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=41.09  E-value=26  Score=15.48  Aligned_cols=29  Identities=24%  Similarity=0.364  Sum_probs=26.8

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             06866447099999999888809659998
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAV   31 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v   31 (443)
                      |+|.|.+-|.|+.++.+-++-+|.++++.
T Consensus        37 k~vgIiG~G~IG~~va~~l~~fg~~V~~~   65 (176)
T pfam02826        37 KTVGIIGLGRIGRAVARRLKAFGMKVIAY   65 (176)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             99999896999999999999839812543


No 414
>PRK08609 hypothetical protein; Provisional
Probab=41.06  E-value=26  Score=15.47  Aligned_cols=49  Identities=22%  Similarity=0.190  Sum_probs=28.5

Q ss_pred             ECCCCCCCEECCCCCCCEEEEE-EECCCHHHHHHHHHHHHHH--CEECCCCC
Q ss_conf             7760238770777684338999-9559989999999987654--08826377
Q gi|254780268|r  365 DSASYQGYTVPSYYDSLIAKLI-VHGKNRKECMMRLNRALNE--IIIDGIKT  413 (443)
Q Consensus       365 Dt~~~~G~~i~~~yDsmlaKiI-~~g~~R~~Ai~~l~~aL~~--~~I~Gv~T  413 (443)
                      |+...-.+++=..+|=.+|-+= ....++++..+|+.+|++.  +.|-|=+|
T Consensus       416 dG~lD~~d~~L~~lD~vvasvHs~~~~~~~~~t~r~~~Ai~np~v~ii~Hpt  467 (570)
T PRK08609        416 DGSLDYDDEVLAELDYVIAAIHSSFSQSEEEIMKRLETACRNPYVRLIAHPT  467 (570)
T ss_pred             CCCCCCCHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf             8887888899985999999813445798899999999997189987884887


No 415
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=40.97  E-value=26  Score=15.46  Aligned_cols=14  Identities=29%  Similarity=0.622  Sum_probs=9.5

Q ss_pred             CCCCCHHHHHHHCC
Q ss_conf             58865316875106
Q gi|254780268|r  429 EGNYDIHWLENKYL  442 (443)
Q Consensus       429 ~g~~~T~fi~~~~~  442 (443)
                      .|+|-|..+++.|+
T Consensus       461 tG~Ypt~~~~~~y~  474 (503)
T PRK09246        461 DGEYVTGDVDQEYL  474 (503)
T ss_pred             CCCCCCCCCCHHHH
T ss_conf             78166999799999


No 416
>PRK13118 consensus
Probab=40.96  E-value=26  Score=15.46  Aligned_cols=216  Identities=13%  Similarity=0.194  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHH---C--CCCEEECCCC
Q ss_conf             99999999888809659998---58557718776758579991899853000698999999987---0--9989945853
Q gi|254780268|r   12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEV---T--GADAIHPGYG   83 (443)
Q Consensus        12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~---~--~~daihPGyG   83 (443)
                      |.-.++++++-+-|...+=+   +|||=..-+-.+.|.+-. |.      +=.+.+.+++..++   .  ++--|.=||-
T Consensus        31 e~t~~~~~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rA-L~------~G~~~~~~~~~v~~~r~~~~~~PivlM~Y~  103 (269)
T PRK13118         31 EASVPLLHGLVAAGADVIELGMPFSDPMADGPAIQLASERA-LA------AGQGLADVLQMVREFRQGDQTTPVVLMGYL  103 (269)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             99999999999769999997898888666579999999999-96------798688999999998643899998997400


Q ss_pred             --HHHCC-HHHHHHHHHCCCE-EECC--CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHHH-CCCCHHH-
Q ss_conf             --13109-7666889845921-6268--98999872189988776642244332433345579998-7320-0330122-
Q gi|254780268|r   84 --FLSEN-AKFAEILEDHHIK-FIGP--SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAM-PIAK-EIGFPVL-  154 (443)
Q Consensus        84 --fLsEn-~~fa~~~e~~Gi~-fIGP--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~-~~a~-~iGyPvi-  154 (443)
                        ++.-. ..|++.|.++|+. +|=|  +++      .-...+..+++.|+..++.....+.++.+ .+++ .-||=.. 
T Consensus       104 N~i~~~G~e~F~~~~~~~GvdGvIipDLP~e------e~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFiY~v  177 (269)
T PRK13118        104 NPIEIYGYERFVAQAKEAGVDGLILVDLPPE------EADELRAPAQAHGLDFIRLTSPTTSDERLPRVLEHASGYLYYV  177 (269)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCEEECCCCCHH------HHHHHHHHHHHCCCCHHEEECCCCCHHHHHHHHHCCCCCEEEE
T ss_conf             0787863999999999859974645899978------9999999999759846403698987899999984378838998


Q ss_pred             -HHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC-EEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             -000234578216888750668999998754321258998168844342011033-157773478702365665421135
Q gi|254780268|r  155 -VKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE-VQIFGDGMGNAIHFGERDCSVQRR  232 (443)
Q Consensus       155 -iKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE-vqVl~D~~g~~v~l~erdCSiQrr  232 (443)
                       .+.+-     |.+ -...+++.+.++..++..     +-++.+-==|..+.|+. +.=.+|    .+.+|..=  +   
T Consensus       178 s~~GvT-----G~~-~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~~~~v~~~aD----GvIVGSa~--V---  237 (269)
T PRK13118        178 SLAGVT-----GAA-ALDTEHVEEAVARLRRHT-----DLPVVVGFGIRDAESAAAIARLAD----GVVVGSAL--V---  237 (269)
T ss_pred             ECCCCC-----CCC-CCCHHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHCCCC----EEEECHHH--H---
T ss_conf             545667-----877-667198999999999625-----898178716799999999980099----99985899--9---


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             622554034455889999999999999886515
Q gi|254780268|r  233 NQKIWEEAHSPVISAQDRTEIGETCVKAMKKID  265 (443)
Q Consensus       233 ~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g  265 (443)
                        |.|+++..   +++..+++.+....+-++++
T Consensus       238 --k~i~~~~~---~~~~~~~~~~~~k~lk~al~  265 (269)
T PRK13118        238 --DAIAEAKD---VDQAVERVLALLAELRQALD  265 (269)
T ss_pred             --HHHHHCCC---HHHHHHHHHHHHHHHHHHHH
T ss_conf             --99985678---26799999999999999998


No 417
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=40.90  E-value=16  Score=17.00  Aligned_cols=84  Identities=21%  Similarity=0.380  Sum_probs=47.4

Q ss_pred             CCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC--CCHH---HHHHHHHCCCCHHHHHCCCCC
Q ss_conf             09766688984592162689899987218998877664224433243334--5579---998732003301220002345
Q gi|254780268|r   87 ENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE--VYPH---TAMPIAKEIGFPVLVKASAGG  161 (443)
Q Consensus        87 En~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~--~~~~---ea~~~a~~iGyPviiKp~~gG  161 (443)
                      .|.-|+-+ +++|-.+ -|+.+.|+.|-+..+.-+-   .+-+.+.++..  +..+   +....+++.||--+.+.+.  
T Consensus        75 ~~~CFa~A-~~ag~vY-Ept~eqi~~Ml~~lk~e~p---~~~~aIq~tGGEPTvr~DL~eiv~~a~e~g~~hVqinTn--  147 (475)
T COG1964          75 NNECFAYA-EEAGYIY-EPTLEQIREMLRNLKKEHP---VGANAVQFTGGEPTLRDDLIEIIKIAREEGYDHVQLNTN--  147 (475)
T ss_pred             CCCCCCCH-HHCCCCC-CCCHHHHHHHHHHHHHCCC---CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCC--
T ss_conf             78675764-3268614-7779999999999985389---998326722898664355899999776568618998257--


Q ss_pred             CCCEEEEEEECHHHHHHHHH
Q ss_conf             78216888750668999998
Q gi|254780268|r  162 GGRGMRIAYSENDLSEAIDQ  181 (443)
Q Consensus       162 GG~Gi~vv~~~~el~~a~~~  181 (443)
                         |++.++++ ++...++.
T Consensus       148 ---GirlA~~~-~~~~~l~~  163 (475)
T COG1964         148 ---GIRLAFDP-EYVKKLRE  163 (475)
T ss_pred             ---CEEECCCH-HHHHHHHH
T ss_conf             ---50201377-89988986


No 418
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=40.85  E-value=26  Score=15.45  Aligned_cols=84  Identities=17%  Similarity=0.260  Sum_probs=53.9

Q ss_pred             EEEEC-CCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE-EC-C
Q ss_conf             86644-709999999988880965999858557718776758579991899853000698999999987099899-45-8
Q gi|254780268|r    5 ILIAN-RGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI-HP-G   81 (443)
Q Consensus         5 iLian-rGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai-hP-G   81 (443)
                      |||-+ .|-|.-.+.+.+.+.|.+++++...    .     .             -..|.+.+.++.++.++|.| |- +
T Consensus         1 ILVtG~~GfiGs~l~~~L~~~g~~v~~~~r~----~-----~-------------D~~d~~~l~~~~~~~~pd~VihlAa   58 (284)
T pfam04321         1 ILVTGANGQLGRELTRLLAERGVEVVALDRP----E-----L-------------DLTDPEAVAALVREARPDVVVNAAA   58 (284)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEECCC----C-----C-------------CCCCHHHHHHHHHHCCCCEEEECCC
T ss_conf             6996489989999999998689989995486----2-----5-------------7889999999998649979997241


Q ss_pred             ---CCHHHCCH------------HHHHHHHHCCCEEECCCHHHH
Q ss_conf             ---53131097------------666889845921626898999
Q gi|254780268|r   82 ---YGFLSENA------------KFAEILEDHHIKFIGPSSEHI  110 (443)
Q Consensus        82 ---yGfLsEn~------------~fa~~~e~~Gi~fIGPs~~ai  110 (443)
                         .....+++            .+++.|.+.|+.||-.|...+
T Consensus        59 ~~~~~~~~~~~~~~~~~Nv~~t~~l~~~~~~~~~~~i~~Ss~~V  102 (284)
T pfam04321        59 YTAVDKAESEPELAYAVNALGPGNLAEACAARGAPLIHISTDYV  102 (284)
T ss_pred             CCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             35556777488889987599999999998744985798417530


No 419
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=40.84  E-value=26  Score=15.45  Aligned_cols=152  Identities=22%  Similarity=0.252  Sum_probs=83.2

Q ss_pred             CHHHHHHHHHHHHCCCEEEEECC--CHHHCCCCHHHCCEEEE-CCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHC
Q ss_conf             09999999988880965999858--55771877675857999-1899853000698999999987099899458531310
Q gi|254780268|r   11 GEIALRILRACKELGIPTVAVHS--TADSGAMHVRLADESVC-IGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSE   87 (443)
Q Consensus        11 Geia~riira~~elGi~tv~v~s--~~D~~a~~~~~ADe~~~-i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsE   87 (443)
                      =++|...|+++++-|...|=..+  .+|..++..   ++..+ +.......|   +-.+.   ++....        +..
T Consensus        29 le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~---~~~~~~i~~~~~~~s---lyel~---e~~~~p--------~e~   91 (347)
T COG2089          29 LERAKELIDAAKEAGADAVKFQTFYTPDIMTLES---KNVPFKIKTLWDKVS---LYELY---EEAETP--------LEW   91 (347)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC---CCCCCCCCCCCCCCC---HHHHH---HHHCCC--------HHH
T ss_conf             8999999999997386655532035631004033---577655555656663---99999---984499--------999


Q ss_pred             CHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEE
Q ss_conf             9766688984592162689899987218998877664224433243-334557999873200330122000234578216
Q gi|254780268|r   88 NAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPG-SGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGM  166 (443)
Q Consensus        88 n~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~-~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi  166 (443)
                      -+++-+.|++.|+.|+ .||-...       +-.++++.++|-..= +...+.-.+++...+.+-|+++-.       ||
T Consensus        92 ~~~Lke~a~~~Gi~~~-SSPfd~~-------svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlST-------Gm  156 (347)
T COG2089          92 HAQLKEYARKRGIIFF-SSPFDLT-------AVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILST-------GM  156 (347)
T ss_pred             HHHHHHHHHHCCEEEE-ECCCCHH-------HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEC-------CC
T ss_conf             9999999987293898-1678878-------8999985699837734743357589999996399779974-------66


Q ss_pred             EEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf             888750668999998754321258998168844342
Q gi|254780268|r  167 RIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLE  202 (443)
Q Consensus       167 ~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~  202 (443)
                         .+.+|+.+++..++.+.     +..+.+-+.+.
T Consensus       157 ---a~~~ei~~av~~~r~~g-----~~~i~LLhC~s  184 (347)
T COG2089         157 ---ATIEEIEEAVAILRENG-----NPDIALLHCTS  184 (347)
T ss_pred             ---CCHHHHHHHHHHHHHCC-----CCCEEEEEECC
T ss_conf             ---40777999999999669-----98769998357


No 420
>pfam04748 Polysacc_deac_2 Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).
Probab=40.71  E-value=26  Score=15.44  Aligned_cols=110  Identities=17%  Similarity=0.183  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCC--EE--ECCCCHHHCCH
Q ss_conf             999999888809659998585577187767585799918998530006989999999870998--99--45853131097
Q gi|254780268|r   14 ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGAD--AI--HPGYGFLSENA   89 (443)
Q Consensus        14 a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~d--ai--hPGyGfLsEn~   89 (443)
                      +.+.++.+++.|-+++.--.. +.... ...-+..  |...   .+.-.+...++.+...-..  +|  |.|=.|-+...
T Consensus        34 ~~~~a~~a~~~g~EvllhlPM-e~~~~-~~~gp~~--L~~~---~~~~~i~~~l~~~l~~~p~avGvnNhmGS~~t~~~~  106 (213)
T pfam04748        34 AAELAEAARAAGHEVLLHLPM-EPLGY-KDPGPGT--LTVG---MSAEEIEKRLEAALSRVPYAVGVNNHMGSRFTADRA  106 (213)
T ss_pred             HHHHHHHHHHCCCEEEEECCC-CCCCC-CCCCCCC--CCCC---CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHH
T ss_conf             699999999879949997456-63468-9999775--8889---999999999999998788848995466755416999


Q ss_pred             H---HHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             6---6688984592162689899987218998877664224433243334
Q gi|254780268|r   90 K---FAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE  136 (443)
Q Consensus        90 ~---fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~  136 (443)
                      .   +.+.+.+.|+-|+-...      ..+..+.+++.+.|||+..-...
T Consensus       107 ~m~~vl~~l~~~gl~fvDS~T------t~~S~a~~~A~~~gvp~~~rdvf  150 (213)
T pfam04748       107 AMRWVMEELKKRGLFFVDSRT------SGRSVAPKLAKELGVPAAKRDVF  150 (213)
T ss_pred             HHHHHHHHHHHCCCEEEECCC------CCCCHHHHHHHHCCCCEEEEEEE
T ss_conf             999999999877988991477------76658999999839986761031


No 421
>PRK05569 flavodoxin; Provisional
Probab=40.68  E-value=26  Score=15.43  Aligned_cols=101  Identities=22%  Similarity=0.324  Sum_probs=56.0

Q ss_pred             CEEEEEE------CCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHC---CHHHHHHHHH-
Q ss_conf             7068664------47099999999888809659998585577187767585799918998530006---9899999998-
Q gi|254780268|r    2 ISKILIA------NRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYL---NIQQIVAACE-   71 (443)
Q Consensus         2 ~~~iLia------nrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYl---di~~ii~~a~-   71 (443)
                      |+||+|.      |--.+|--|...+++-|+++.+.+.. +....++..+| ++.+|.++....-+   .+..+++-.+ 
T Consensus         1 M~Kv~IvY~S~~GnTe~mA~~IaeG~~~~G~ev~v~~~~-~~~~~di~~~d-~i~~GspT~~~~~~~~~~~~~~l~~l~~   78 (141)
T PRK05569          1 MKKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVA-DAKVEDVLEAD-AVAFGSPSMDNNNIEQEEMAPFLDQFKL   78 (141)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC-CCCHHHHHHCC-EEEEECCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             974999998996089999999999999769819999842-39988997189-0599054558887771769999999853


Q ss_pred             ---HCCCCEEECCCCHHHCC--HHHHHHHHHCCCEEEC
Q ss_conf             ---70998994585313109--7666889845921626
Q gi|254780268|r   72 ---VTGADAIHPGYGFLSEN--AKFAEILEDHHIKFIG  104 (443)
Q Consensus        72 ---~~~~daihPGyGfLsEn--~~fa~~~e~~Gi~fIG  104 (443)
                         +.+.-+++..||.-|-.  ..+.+.+++.|+.+++
T Consensus        79 ~~~~~K~~a~FGSyGW~~Ge~~~~~~~~l~~~g~~vv~  116 (141)
T PRK05569         79 TPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIG  116 (141)
T ss_pred             CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf             45589889999667788646999999999978984824


No 422
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type; InterPro: IPR012846   Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this entry also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding, 0009082 branched chain family amino acid biosynthetic process.
Probab=40.62  E-value=26  Score=15.43  Aligned_cols=334  Identities=18%  Similarity=0.209  Sum_probs=157.4

Q ss_pred             HHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHH
Q ss_conf             99998888096599985855771877675857999189985300069899999998709989945853131097666889
Q gi|254780268|r   16 RILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEIL   95 (443)
Q Consensus        16 riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~   95 (443)
                      =+++++++.|+++|=-|.=-.-..-    =|..|...-         -..|..|--+|.==|+|-     +|  -+||+=
T Consensus         6 ~~~~sL~~~gV~~vFGYPGGA~Lpi----YD~Ly~fe~---------~s~~~HIL~RHEQgA~Ha-----AD--GYARAs   65 (593)
T TIGR00118         6 AIVESLKDEGVETVFGYPGGAILPI----YDALYRFET---------DSGIEHILVRHEQGAVHA-----AD--GYARAS   65 (593)
T ss_pred             HHHHHHHHCCCCEEECCCCCCHHHH----HHHHHCCCC---------CCCCEEECCCHHHHHHHH-----HC--CCEECC
T ss_conf             9999998679869974898643567----766503012---------688327216725576454-----23--440015


Q ss_pred             HHCCCEEE--CCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCC-CCCH---HHHHHHHHCCC--CHHHHHCCCCCCCCEEE
Q ss_conf             84592162--68989998721899887766422443324333-4557---99987320033--01220002345782168
Q gi|254780268|r   96 EDHHIKFI--GPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG-EVYP---HTAMPIAKEIG--FPVLVKASAGGGGRGMR  167 (443)
Q Consensus        96 e~~Gi~fI--GPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~-~~~~---~ea~~~a~~iG--yPviiKp~~gGGG~Gi~  167 (443)
                      -+-|+.|.  ||.+-      |=+.==..|--=.+|.+-.+. +.+.   .||-+-++=+|  -|+ +|=++        
T Consensus        66 GkvGVv~~TSGPGAT------N~VTGiAtAy~DS~P~Vv~tGQV~t~~IG~DAFQE~D~~GIt~Pi-tKHsf--------  130 (593)
T TIGR00118        66 GKVGVVLATSGPGAT------NLVTGIATAYMDSVPLVVFTGQVPTSLIGSDAFQEADILGITMPI-TKHSF--------  130 (593)
T ss_pred             CCEEEEEEECCCCCH------HHHHHHHHHHHCCCCEEEECCCHHHHHCCCCCCHHHHHCCCCCCE-EEEEE--------
T ss_conf             830289860798723------356567775425765377517600010137500000111346665-67530--------


Q ss_pred             EEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCC--CCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             88750668999998754321258998168844342011033157773478--7023656654211356225540344558
Q gi|254780268|r  168 IAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMG--NAIHFGERDCSVQRRNQKIWEEAHSPVI  245 (443)
Q Consensus       168 vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g--~~v~l~erdCSiQrr~qkiiEeaPap~l  245 (443)
                      .|++.+||...++.|+.-|.+-- -++|+|+  |  ||-|.-+-+.-.+.  .-+.|..+       ++++   .+.|.-
T Consensus       131 ~V~~~edlp~~~~~AF~IA~TGR-PGPVlvD--l--PKDv~~~~~~~~~~~P~~v~LPgY-------~P~~---~Gh~~Q  195 (593)
T TIGR00118       131 QVKSAEDLPRIIKEAFHIATTGR-PGPVLVD--L--PKDVTTAEIEFPYDDPEKVNLPGY-------KPTV---EGHPLQ  195 (593)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCC-CCCEEEE--C--CCCCCCHHHCCCCCCCCEEECCCC-------CCCC---CCCCCH
T ss_conf             02587899999998776432766-6882785--8--842243333267888860007887-------8888---988314


Q ss_pred             CHHHHHHHHHHHHHHHHHHC---CCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             89999999999999886515---434102458972883499822765433201678863256201123222102222211
Q gi|254780268|r  246 SAQDRTEIGETCVKAMKKID---YRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRLSVQQ  322 (443)
Q Consensus       246 ~~~~~~~i~~~A~~~~~~~g---~~g~~tvEFl~~~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l~~~~  322 (443)
                      ++-+.+.|..++.-+.++=+   |.|.|-+.  ..+..==+.|..=|+|.  |||.-.-|           .|.   +-+
T Consensus       196 defv~qsI~kA~~li~~AkkPVilvGGGvin--~a~as~~L~elae~~~~--PV~tTLmG-----------lG~---FP~  257 (593)
T TIGR00118       196 DEFVMQSIKKAAELIEKAKKPVILVGGGVIN--IAGASEELKELAERLQI--PVTTTLMG-----------LGS---FPE  257 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCHHHH--CCCCHHHHHHHHHHCCC--CCEECCCC-----------CCC---CCC
T ss_conf             5789999999999999726977986413542--05540799999854077--60010156-----------788---784


Q ss_pred             CCCC------CCHHHHHHHCCCC--CC-----CCC-CCCCCCEEEEECCCCCCEEEECCCCCCCEECCCCCCC-EEEEEE
Q ss_conf             3333------2012453302456--62-----211-1124421588668998446777602387707776843-389999
Q gi|254780268|r  323 KDIT------FSGHAIECRINAE--DP-----ENF-IPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSL-IAKLIV  387 (443)
Q Consensus       323 ~~i~------~~g~aie~Ri~aE--dp-----~~f-~Ps~G~i~~~~~p~~~gvRvDt~~~~G~~i~~~yDsm-laKiI~  387 (443)
                      +++.      -+|... |=..-.  |-     ..| =-.+|.|..|.+-.-   | -..-..|..|...=||- |+|.+.
T Consensus       258 ~Hp~~LGMlGMHGt~~-AN~Av~EcDllIAvG~RFdDRvTGnl~~FAp~Ak---r-aaaeGrGGiiHiDIDPaeIgK~v~  332 (593)
T TIGR00118       258 DHPLSLGMLGMHGTKT-ANLAVHECDLLIAVGARFDDRVTGNLAKFAPNAK---R-AAAEGRGGIIHIDIDPAEIGKNVR  332 (593)
T ss_pred             CCHHHHCCCCCHHHHH-HHHHHHHCCEEEEEEEEECCCCCCCHHHHCHHHH---H-HHHCCCCCEEEEEECCCCCCCCCC
T ss_conf             6835503567657888-7325420532145300005663487767231656---7-541478736999853765577114


Q ss_pred             EC----CCHHHHHHHHHHHHHHC-EECCCCCCHHHHHHHH
Q ss_conf             55----99899999999876540-8826377888999896
Q gi|254780268|r  388 HG----KNRKECMMRLNRALNEI-IIDGIKTTIPLFQKLI  422 (443)
Q Consensus       388 ~g----~~R~~Ai~~l~~aL~~~-~I~Gv~TN~~~l~~il  422 (443)
                      ..    -|=...|++|...|.+. ...--++...|+.+|=
T Consensus       333 ~diPiVGDAr~VL~~ll~~~~~~~~~~~~~~~~~W~~~i~  372 (593)
T TIGR00118       333 VDIPIVGDARNVLEELLKKLEKEKALKERSEEQAWLEQIN  372 (593)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             6401036758999999999876303567224889999999


No 423
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=40.59  E-value=27  Score=15.42  Aligned_cols=74  Identities=23%  Similarity=0.266  Sum_probs=34.4

Q ss_pred             CCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCH---HHHHHHHHH-CCCCCCCCCCC
Q ss_conf             69899999998709989945853131097666889845921626898999872189---988776642-24433243334
Q gi|254780268|r   61 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDK---ITAKKTAQQ-LGIPVVPGSGE  136 (443)
Q Consensus        61 ldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK---~~~k~~a~~-~GVP~~p~~~~  136 (443)
                      ..+.+++++|.+.+...|.-                        -++.+...+|.+   ...+.++++ .+||++=...-
T Consensus        29 e~~~Avi~AAee~~sPvIlq------------------------~s~g~~~~~g~~~l~~~~~~a~~~~~~VPValHLDH   84 (347)
T PRK09196         29 EQVQAIMEAADETDSPVILQ------------------------ASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDH   84 (347)
T ss_pred             HHHHHHHHHHHHHCCCEEEE------------------------CCHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             99999999999968998999------------------------873177665879999999999985689988997478


Q ss_pred             CCHHHHHHHHHCCCCH-HHHHCC
Q ss_conf             5579998732003301-220002
Q gi|254780268|r  137 VYPHTAMPIAKEIGFP-VLVKAS  158 (443)
Q Consensus       137 ~~~~ea~~~a~~iGyP-viiKp~  158 (443)
                      ....+....+-+.||- ||+-.|
T Consensus        85 g~~~e~i~~ai~~GFtSVMiDgS  107 (347)
T PRK09196         85 GNSPATCQRAIQLGFTSVMMDGS  107 (347)
T ss_pred             CCCHHHHHHHHHCCCCEEEEECC
T ss_conf             89999999998648983897365


No 424
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase homolog; InterPro: IPR012815    This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbour-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (IPR012812 from INTERPRO). Members of this family are likely to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.; GO: 0050531 mannosyl-3-phosphoglycerate phosphatase activity, 0005737 cytoplasm.
Probab=40.43  E-value=18  Score=16.57  Aligned_cols=32  Identities=25%  Similarity=0.271  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHCCCEEEEECCCHHHCCCCHHH
Q ss_conf             99999998888096599985855771877675
Q gi|254780268|r   13 IALRILRACKELGIPTVAVHSTADSGAMHVRL   44 (443)
Q Consensus        13 ia~riira~~elGi~tv~v~s~~D~~a~~~~~   44 (443)
                      .|.+.+|.++|.||-.|..-|.........+.
T Consensus        20 PA~~~l~~L~e~~iPvI~CtSKTAAEv~~lr~   51 (224)
T TIGR02463        20 PAAPWLTRLQEAGIPVILCTSKTAAEVEALRK   51 (224)
T ss_pred             HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
T ss_conf             77999999997589764258730789999999


No 425
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=40.43  E-value=27  Score=15.41  Aligned_cols=34  Identities=24%  Similarity=0.477  Sum_probs=27.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCEE-----EEECCCHHHC
Q ss_conf             6866447099999999888809659-----9985855771
Q gi|254780268|r    4 KILIANRGEIALRILRACKELGIPT-----VAVHSTADSG   38 (443)
Q Consensus         4 ~iLianrGeia~riira~~elGi~t-----v~v~s~~D~~   38 (443)
                      |||+.+-|-|.|.++|.+--||+.+     |.| +|.|+.
T Consensus         1 kvlvVGAGgIGCEllKnlal~G~~~~~~G~i~v-~D~D~I   39 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITV-TDMDNI   39 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEE-EECCCE
T ss_conf             989993776418999999983878689880899-708847


No 426
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases; InterPro: IPR004507   This family contains flavoproteins, which are aromatic acid decarboxylases. An example is the Saccharomyces cerevisiae gene, PAD1 that encodes phenylacrylic acid decarboxylase. Mutations of this gene are viable and confer resistance to cinnamic acid. ; GO: 0016831 carboxy-lyase activity.
Probab=40.42  E-value=27  Score=15.41  Aligned_cols=29  Identities=34%  Similarity=0.434  Sum_probs=23.6

Q ss_pred             CCHH-HHHHHHHHHHCCCEEEEECCCHHHC
Q ss_conf             7099-9999998888096599985855771
Q gi|254780268|r   10 RGEI-ALRILRACKELGIPTVAVHSTADSG   38 (443)
Q Consensus        10 rGei-a~riira~~elGi~tv~v~s~~D~~   38 (443)
                      .|-| +.|+++.+|++|.|+-+|-|+....
T Consensus        10 sGvI~G~RLL~~Lk~~GvE~~LviS~~A~~   39 (181)
T TIGR00421        10 SGVIYGIRLLEVLKELGVEVHLVISKWAKK   39 (181)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEECHHHHH
T ss_conf             489999999999986793687863558999


No 427
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=40.35  E-value=27  Score=15.40  Aligned_cols=13  Identities=23%  Similarity=0.509  Sum_probs=8.1

Q ss_pred             EEEECHHHHHHHH
Q ss_conf             8875066899999
Q gi|254780268|r  168 IAYSENDLSEAID  180 (443)
Q Consensus       168 vv~~~~el~~a~~  180 (443)
                      .+++++|..++++
T Consensus       147 LI~~~edv~~aL~  159 (174)
T pfam04309       147 LIRTEEEVREALK  159 (174)
T ss_pred             CCCCHHHHHHHHH
T ss_conf             8388999999998


No 428
>PRK06740 histidinol-phosphatase; Validated
Probab=40.34  E-value=27  Score=15.40  Aligned_cols=26  Identities=12%  Similarity=0.054  Sum_probs=11.5

Q ss_pred             HHHHHHHHCCCCHHHHHCCCCCCCCE
Q ss_conf             99987320033012200023457821
Q gi|254780268|r  140 HTAMPIAKEIGFPVLVKASAGGGGRG  165 (443)
Q Consensus       140 ~ea~~~a~~iGyPviiKp~~gGGG~G  165 (443)
                      ++...+.+...|=.+|=+++=.+|=|
T Consensus       156 ~~l~~lL~~YpfDYvIGSVHFl~gWg  181 (338)
T PRK06740        156 QELQSLLALGDFDYVIGSVHFLNGWG  181 (338)
T ss_pred             HHHHHHHHCCCCCEEEEEEEEECCCC
T ss_conf             99999974499755998888607878


No 429
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=40.34  E-value=27  Score=15.40  Aligned_cols=31  Identities=26%  Similarity=0.510  Sum_probs=23.6

Q ss_pred             HHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCC
Q ss_conf             984592162689899987218998877664224433
Q gi|254780268|r   95 LEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPV  130 (443)
Q Consensus        95 ~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~  130 (443)
                      +.-.|+.++||+.     .|....+|.++-+++||-
T Consensus       181 kiPkGvlLvGpPG-----TGKTLLAkAvAgEA~VPF  211 (596)
T COG0465         181 KIPKGVLLVGPPG-----TGKTLLAKAVAGEAGVPF  211 (596)
T ss_pred             CCCCCEEEECCCC-----CCCHHHHHHHHCCCCCCC
T ss_conf             3456526855999-----872789999845468983


No 430
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=40.33  E-value=27  Score=15.40  Aligned_cols=73  Identities=19%  Similarity=0.240  Sum_probs=30.6

Q ss_pred             EEEEECCCHH---HHHHHHHHHH-CCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE
Q ss_conf             6866447099---9999998888-0965999858557718776758579991899853000698999999987099899
Q gi|254780268|r    4 KILIANRGEI---ALRILRACKE-LGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI   78 (443)
Q Consensus         4 ~iLianrGei---a~riira~~e-lGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai   78 (443)
                      ||++.++|--   |.-+-...++ +++.+.++++.+-...... .-++...|.-....++ .++-..++.|++.|+..|
T Consensus         1 rI~~~G~GsS~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lvI~iS~SG~t-~e~i~a~~~a~~~g~~~i   77 (126)
T cd05008           1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPL-LDEDTLVIAISQSGET-ADTLAALRLAKEKGAKTV   77 (126)
T ss_pred             CEEEEEECHHHHHHHHHHHHHHHHCCCCEEEECHHHHHCCCCC-CCCCCEEEEECCCCCC-CCHHHHHHHHHHCCCCEE
T ss_conf             9999996179999999999999972998899860675544788-9998599998689798-007889999998299489


No 431
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=40.30  E-value=24  Score=15.78  Aligned_cols=48  Identities=25%  Similarity=0.358  Sum_probs=37.9

Q ss_pred             HHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHC
Q ss_conf             987218998877664224433243334557999873200330122000
Q gi|254780268|r  110 IKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKA  157 (443)
Q Consensus       110 i~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp  157 (443)
                      +-..||+.....+|-+.|-.+.--.+....++...+|++.+.|++--.
T Consensus       117 LlIVGnR~~iq~lAL~~~~AVLvTGGF~~s~evi~lAne~~lPvlsts  164 (432)
T COG4109         117 LLIVGNREDIQLLALENGNAVLVTGGFDVSDEVIKLANEKGLPVLSTS  164 (432)
T ss_pred             EEEEECHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEC
T ss_conf             699946899999998649859995798865889976401488448704


No 432
>pfam01380 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Presumably the SIS domains bind to the end-product of the pathway.
Probab=40.20  E-value=27  Score=15.38  Aligned_cols=74  Identities=20%  Similarity=0.252  Sum_probs=42.0

Q ss_pred             CEEEEEECCCH---HHHHHHHHHHHCCCEEEEECCCHHHCCC---CHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCC
Q ss_conf             70686644709---9999999888809659998585577187---76758579991899853000698999999987099
Q gi|254780268|r    2 ISKILIANRGE---IALRILRACKELGIPTVAVHSTADSGAM---HVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGA   75 (443)
Q Consensus         2 ~~~iLianrGe---ia~riira~~elGi~tv~v~s~~D~~a~---~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~   75 (443)
                      -+||++.+.|-   +|.-.-+.+.++|...+.++...+....   ....-|-.+.+.  ...+ -.+.-..++.|++.|+
T Consensus         5 a~rI~~~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~iS--~sG~-t~~~~~~~~~a~~~g~   81 (131)
T pfam01380         5 AKRIYVIGAGTSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAIS--QSGE-TRDLLEAAKLLKARGA   81 (131)
T ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCCCCEEEEEC--CCCC-CHHHHHHHHHHHHCCC
T ss_conf             898999993269999999999999868987786365886606756799999999954--8986-5768987899998499


Q ss_pred             CEE
Q ss_conf             899
Q gi|254780268|r   76 DAI   78 (443)
Q Consensus        76 dai   78 (443)
                      ..|
T Consensus        82 ~~i   84 (131)
T pfam01380        82 KII   84 (131)
T ss_pred             EEE
T ss_conf             699


No 433
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=40.20  E-value=27  Score=15.38  Aligned_cols=33  Identities=12%  Similarity=0.184  Sum_probs=20.8

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             21688875066899999875432125899816884
Q gi|254780268|r  164 RGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       164 ~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      |-...+.+++++.+.+++|.+.+..  +.++++++
T Consensus       126 k~~~~v~~~~~~~~~l~~A~~~A~~--~~GPv~l~  158 (578)
T PRK06546        126 HYCEMVSTPEQAPRVLHSAIQHAVA--GGGVSVVT  158 (578)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHHC--CCCCEEEE
T ss_conf             6536630334159999999999747--99987997


No 434
>PRK06264 cbiC precorrin-8X methylmutase; Validated
Probab=40.19  E-value=13  Score=17.62  Aligned_cols=140  Identities=14%  Similarity=0.141  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHCCCEEEEECCCHHHCC------------CCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEE
Q ss_conf             9999999988880965999858557718------------7767585799918998530006989999999870998994
Q gi|254780268|r   12 EIALRILRACKELGIPTVAVHSTADSGA------------MHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH   79 (443)
Q Consensus        12 eia~riira~~elGi~tv~v~s~~D~~a------------~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daih   79 (443)
                      +|..|+|.|+-+..|.-...+++..-.+            +++.|.--.  |. .....+|++-+.+.+.|++.+..--.
T Consensus        40 ~Vv~RvIHatgD~~~~~~l~fs~~av~~g~~AL~~g~~IvtDv~MV~aG--I~-~~~v~C~i~d~~v~~~a~~~g~TRs~  116 (210)
T PRK06264         40 GIIERVVHATADPEYAKLVVFSNNPIETGLDALNDKKPIITDISMVKAG--IR-YNDVLCTISEKEVFELAKKEQITRAV  116 (210)
T ss_pred             HHHHHHHEECCCHHHHHHEEECHHHHHHHHHHHHCCCCEEECCHHHHHC--CC-CCCEEEECCCCCHHHHHHCCCCCHHH
T ss_conf             8899860204664039674578689999999998699799836898803--77-57468868894287785265977999


Q ss_pred             CCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHH--HHCCCCCCCCCCCCCHHHHHHHHHCCCCHHH-HH
Q ss_conf             58531310976668898459216268989998721899887766--4224433243334557999873200330122-00
Q gi|254780268|r   80 PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTA--QQLGIPVVPGSGEVYPHTAMPIAKEIGFPVL-VK  156 (443)
Q Consensus        80 PGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a--~~~GVP~~p~~~~~~~~ea~~~a~~iGyPvi-iK  156 (443)
                      -       ....+..-...+|..||-.|.++..+-+-+.....-  -=.|+|  .|  +....|.++...+.+.|.+ ++
T Consensus       117 a-------a~~~a~~~~~~aIvvIGNAPTAL~~lleli~~g~~~PaLVIG~P--VG--FVgA~ESKe~L~~~~iP~It~~  185 (210)
T PRK06264        117 A-------SMRAAKELIDGGIVVIGNAPTALFEVIRLNKEEGITPKLVVGVP--VG--FVKAAESKEALRTTNIPSISTI  185 (210)
T ss_pred             H-------HHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCCEEEECC--CC--CCCHHHHHHHHHHCCCCEEEEE
T ss_conf             9-------99999864799789967877999999999985499974688568--66--6677999999986899989971


Q ss_pred             CCCCCCCCE
Q ss_conf             023457821
Q gi|254780268|r  157 ASAGGGGRG  165 (443)
Q Consensus       157 p~~gGGG~G  165 (443)
                      -..||+..-
T Consensus       186 GrkGGS~vA  194 (210)
T PRK06264        186 GPKGGTPVA  194 (210)
T ss_pred             CCCCCHHHH
T ss_conf             698759999


No 435
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706   Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.    Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , .    This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=40.18  E-value=20  Score=16.29  Aligned_cols=38  Identities=24%  Similarity=0.388  Sum_probs=18.3

Q ss_pred             CCHHHHHHHHHCC--CEEECCC-HHHHHHHHCHHHHHHHHHHCCCCC
Q ss_conf             0976668898459--2162689-899987218998877664224433
Q gi|254780268|r   87 ENAKFAEILEDHH--IKFIGPS-SEHIKIMGDKITAKKTAQQLGIPV  130 (443)
Q Consensus        87 En~~fa~~~e~~G--i~fIGPs-~~ai~~~gDK~~~k~~a~~~GVP~  130 (443)
                      +.-+|.+.+.+.|  |-|+|+- -.|=+..      ++.|+++|.+=
T Consensus        51 ~Ay~~v~~~~~~gg~iLFVGTKNkQA~~~i------~~~A~r~g~~Y   91 (227)
T TIGR01011        51 EAYNFVREVVANGGKILFVGTKNKQAKEII------KEEAERCGMFY   91 (227)
T ss_pred             HHHHHHHHHHHCCCEEEEEECHHHHHHHHH------HHHHHHCCCCE
T ss_conf             999999999981995888516588999999------99998748962


No 436
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria.  The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=40.17  E-value=27  Score=15.38  Aligned_cols=50  Identities=20%  Similarity=0.280  Sum_probs=26.8

Q ss_pred             CCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCC
Q ss_conf             9216268989998721899887766422443324333455799987320033012200023457
Q gi|254780268|r   99 HIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGG  162 (443)
Q Consensus        99 Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGG  162 (443)
                      .+.+.|.+..      .|...-+++..+|.|.+........++        |--.+.||.++|+
T Consensus        93 dlVl~g~~s~------g~~~~~~lA~~L~~~~v~~v~~i~~~~--------~~~~~~R~~~~g~  142 (181)
T cd01985          93 DLILAGATSI------GKQLAPRVAALLGVPQISDVTKLEIDG--------GDLTVTRPIYAGN  142 (181)
T ss_pred             CEEEECCCHH------HCCHHHHHHHHHCCCCCCCEEEEEECC--------CEEEEEEEEECCC
T ss_conf             8999604102------225899999985997312379999809--------9699999940697


No 437
>PRK13133 consensus
Probab=40.07  E-value=27  Score=15.37  Aligned_cols=177  Identities=17%  Similarity=0.220  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC---------CCCEEE
Q ss_conf             99999999888809659998---585577187767585799918998530006989999999870---------998994
Q gi|254780268|r   12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT---------GADAIH   79 (443)
Q Consensus        12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~---------~~daih   79 (443)
                      +.-.++++++.+.|..-+=+   ||||=..-+-.+.|.+.. |.      +=.+.+.+++..++.         ..--|+
T Consensus        29 ~~t~~~i~~l~~~GaDiiElGiPFSDP~ADGpvIQ~A~~rA-L~------~G~~~~~~~~~~~~~r~~~~~~~~~~Pivl  101 (267)
T PRK13133         29 GATLPVLEALQESGADIIELGIPYSDPIGDGPVIQNAAHTA-IR------NGVSVRSLLELVRKARNGEGCRKITVPILL  101 (267)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-HH------CCCCHHHHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf             99999999999759998997899888666689999999999-98------699899999999999730243466877871


Q ss_pred             CCCC--HHHCC-HHHHHHHHHCCCE-EECC--CHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHH-CCCC
Q ss_conf             5853--13109-7666889845921-6268--9899987218998877664224433243334557999-87320-0330
Q gi|254780268|r   80 PGYG--FLSEN-AKFAEILEDHHIK-FIGP--SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTA-MPIAK-EIGF  151 (443)
Q Consensus        80 PGyG--fLsEn-~~fa~~~e~~Gi~-fIGP--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea-~~~a~-~iGy  151 (443)
                      =||-  ++.=. ..|.+.|.++|+. +|=|  +++      .....+..+++.|+..++.....++++. ..+++ .-||
T Consensus       102 MtY~N~i~~yG~e~F~~~~~~aGvdGlIipDLP~e------E~~~~~~~~~~~gl~~I~lvaPtt~~eRi~~i~~~s~GF  175 (267)
T PRK13133        102 MGYCNPLIAYGGDCFLADAVKAGVDGLLIPDLPPE------EAIDFLERAKNFGLTVVFLISPVTPPERIEFIDSLSTDF  175 (267)
T ss_pred             HHHHHHHHHHCHHHHHHHHHHCCCCEEECCCCCHH------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCC
T ss_conf             56457999847799999999869878877899968------889999999846986024428999999999998427895


Q ss_pred             HHH--HHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC
Q ss_conf             122--000234578216888750668999998754321258998168844342011033
Q gi|254780268|r  152 PVL--VKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE  208 (443)
Q Consensus       152 Pvi--iKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE  208 (443)
                      =..  ....-|  .+-...-.-+..+.+.+++.++.+     +.+|.+-==|..+.|++
T Consensus       176 iY~vs~~GvTG--~~~~~~~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGI~~~e~~~  227 (267)
T PRK13133        176 SYCLAVNATTG--TAKLSDAGTEAAVDEYLKRVRQHT-----KKKFVVGFGIKDRERVE  227 (267)
T ss_pred             EEEEEEECCCC--CCCCCCCCHHHHHHHHHHHHHHCC-----CCCEEEECCCCCHHHHH
T ss_conf             79998001346--775555426789999999999718-----99879966879999999


No 438
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=40.00  E-value=27  Score=15.36  Aligned_cols=149  Identities=21%  Similarity=0.265  Sum_probs=76.1

Q ss_pred             CCCHHHHHHHHHHHHCCCEEE---EECCCHHHCCCCHHHCC---EEEECCCCCCCCHHCCHHHHHHHH----HHCCCCE-
Q ss_conf             470999999998888096599---98585577187767585---799918998530006989999999----8709989-
Q gi|254780268|r    9 NRGEIALRILRACKELGIPTV---AVHSTADSGAMHVRLAD---ESVCIGPPSSKDSYLNIQQIVAAC----EVTGADA-   77 (443)
Q Consensus         9 nrGeia~riira~~elGi~tv---~v~s~~D~~a~~~~~AD---e~~~i~~~~~~~sYldi~~ii~~a----~~~~~da-   77 (443)
                      ..++-.++.++++-++||+.|   .+|-+.+..-...+.+.   +-++|-...... ....+.+++.+    ++.|.|- 
T Consensus        25 ~~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s~v~ReelFittKvw~~-~~~~~~~~~a~e~Sl~rLg~dyv  103 (280)
T COG0656          25 GDDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKESGVPREELFITTKVWPS-DLGYDETLKALEASLKRLGLDYV  103 (280)
T ss_pred             CCCHHHHHHHHHHHHHCCCEEECHHHHCCHHHHHHHHHHCCCCHHHEEEEEECCCC-CCCCCHHHHHHHHHHHHHCCCCE
T ss_conf             88635999999999707112733867569899999998539987784898622776-57832799999999999689842


Q ss_pred             ----EE-CC---CCHHHCCHHHHHHHHHCC-CEEECCCHHHHHHHHCHHHHHHHHHHCCCC-C---CCCCCCCCHHHHHH
Q ss_conf             ----94-58---531310976668898459-216268989998721899887766422443-3---24333455799987
Q gi|254780268|r   78 ----IH-PG---YGFLSENAKFAEILEDHH-IKFIGPSSEHIKIMGDKITAKKTAQQLGIP-V---VPGSGEVYPHTAMP  144 (443)
Q Consensus        78 ----ih-PG---yGfLsEn~~fa~~~e~~G-i~fIGPs~~ai~~~gDK~~~k~~a~~~GVP-~---~p~~~~~~~~ea~~  144 (443)
                          || |.   |+-+.|--.--+.+.+.| +..||-|--..+.+      .+++...++. +   +.........++++
T Consensus       104 DLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L------~~l~~~~~~~p~~NQIe~hp~~~q~el~~  177 (280)
T COG0656         104 DLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHL------EELLSLAKVKPAVNQIEYHPYLRQPELLP  177 (280)
T ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHH------HHHHHHCCCCCCEEEEEECCCCCCHHHHH
T ss_conf             288977888766767899999999999649824797747998999------99998469987548888267878499999


Q ss_pred             HHHCCCCHHHHHCCCCCCCC
Q ss_conf             32003301220002345782
Q gi|254780268|r  145 IAKEIGFPVLVKASAGGGGR  164 (443)
Q Consensus       145 ~a~~iGyPviiKp~~gGGG~  164 (443)
                      ++++.|-+++-=..-+.|++
T Consensus       178 ~~~~~gI~v~AysPL~~g~~  197 (280)
T COG0656         178 FCQRHGIAVEAYSPLAKGGK  197 (280)
T ss_pred             HHHHCCCEEEEECCCCCCCC
T ss_conf             99987998999787223663


No 439
>TIGR00970 leuA_yeast 2-isopropylmalate synthase; InterPro: IPR005668    Alpha-isopropylmalate synthase (2.3.3.13 from EC) catalyses the first step in the biosynthesis of leucine, the condensation of acetyl-CoA and alpha- ketoisovalerate to form 2-isopropylmalate synthase. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.; GO: 0003852 2-isopropylmalate synthase activity, 0009098 leucine biosynthetic process.
Probab=39.93  E-value=17  Score=16.72  Aligned_cols=125  Identities=17%  Similarity=0.190  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCC----------HHCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf             999999888809659998585577187767585799918998530----------0069899999998709989945853
Q gi|254780268|r   14 ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKD----------SYLNIQQIVAACEVTGADAIHPGYG   83 (443)
Q Consensus        14 a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~----------sYldi~~ii~~a~~~~~daihPGyG   83 (443)
                      -.|-.+-+-.||++=|=| +=|=+.+++..+--+++--|+..+++          .-| |..-++++.=.+=-.||-   
T Consensus        54 K~ryF~lLv~iGfKEIEV-gFPSASQTDFdFvR~~iE~~G~iPDDVtIq~LtqsRe~L-I~RT~eAl~GAk~A~vH~---  128 (615)
T TIGR00970        54 KKRYFKLLVRIGFKEIEV-GFPSASQTDFDFVRELIEQGGLIPDDVTIQVLTQSREEL-IKRTVEALSGAKKATVHL---  128 (615)
T ss_pred             HHHHHHHHHHCCCEEEEE-CCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEE---
T ss_conf             999998873078568873-288876352689889761778888742277521788778-999999830686216754---


Q ss_pred             HHHCCHHHHHHHHHCCCEEECCCHHHHHHH--HCHHHHHHHHHHCCCCCCCCCCCCC--------HHHHHHHHHCC
Q ss_conf             131097666889845921626898999872--1899887766422443324333455--------79998732003
Q gi|254780268|r   84 FLSENAKFAEILEDHHIKFIGPSSEHIKIM--GDKITAKKTAQQLGIPVVPGSGEVY--------PHTAMPIAKEI  149 (443)
Q Consensus        84 fLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~--gDK~~~k~~a~~~GVP~~p~~~~~~--------~~ea~~~a~~i  149 (443)
                      ++|...-|-+.+=+      -...|++.++  |.|+..|.+-+.+.-+-..|....+        .+-|++.++-+
T Consensus       129 YnatS~lfRevVFr------~sr~E~~~~A~~g~K~vrk~tk~a~~~~~T~W~fEySPE~fsdTe~efA~evCeAV  198 (615)
T TIGR00970       129 YNATSDLFREVVFR------ASREEVLALAVEGSKLVRKLTKDAAKSKETRWSFEYSPESFSDTELEFAVEVCEAV  198 (615)
T ss_pred             HHHCCHHHHHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHH
T ss_conf             01124256678640------57689999864278999999873341577645310067767888547899999987


No 440
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=39.82  E-value=27  Score=15.34  Aligned_cols=46  Identities=22%  Similarity=0.318  Sum_probs=31.2

Q ss_pred             CCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf             30122000234578216888750668999998754321258998168844342
Q gi|254780268|r  150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLE  202 (443)
Q Consensus       150 GyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~  202 (443)
                      ..|=..|-+.+-|..|. .|++.+||.++++.|.+.      +++.+||=-++
T Consensus       128 ~~~d~~~lA~a~G~~~~-~v~~~~el~~al~~a~~~------~gP~lieV~vd  173 (178)
T cd02014         128 PNPDFAKIAEAMGIKGI-RVEDPDELEAALDEALAA------DGPVVIDVVTD  173 (178)
T ss_pred             CCCCHHHHHHHCCCEEE-EECCHHHHHHHHHHHHHC------CCCEEEEEECC
T ss_conf             99988999997697079-978999999999999968------99799999808


No 441
>PRK10676 DNA-binding transcriptional regulator ModE; Provisional
Probab=39.79  E-value=27  Score=15.34  Aligned_cols=80  Identities=18%  Similarity=0.221  Sum_probs=50.7

Q ss_pred             HCCCEEECCC----HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEE
Q ss_conf             4592162689----899987218998877664224433243334557-99987320033012200023457821688875
Q gi|254780268|r   97 DHHIKFIGPS----SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYP-HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYS  171 (443)
Q Consensus        97 ~~Gi~fIGPs----~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~-~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~  171 (443)
                      -.+-.|+||.    -++|+.+|.=   .+.++..|++--      .. +-....-+..+.|++.+...|-+|-|.++-..
T Consensus        11 ~~~~~~~g~~ri~LL~~I~~~gSI---s~Aak~~g~SYk------~AW~~i~~~n~~~~~plv~~~~GG~~Ggg~~lT~~   81 (262)
T PRK10676         11 LQQKLFADPRRISLLKQIALSGSI---SQGAKDAGISYK------SAWDAINEMNQLSEHILVERATGGKGGGGAVLTRY   81 (262)
T ss_pred             ECCEECCCCCHHHHHHHHHHHCCH---HHHHHHCCCCHH------HHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECHH
T ss_conf             899462696789999999874999---999998199699------99999999975467977997459999988687578


Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             06689999987543
Q gi|254780268|r  172 ENDLSEAIDQARSE  185 (443)
Q Consensus       172 ~~el~~a~~~a~~e  185 (443)
                      -.++-+.|+...++
T Consensus        82 G~~li~~y~~l~~~   95 (262)
T PRK10676         82 GQRLIQLYDLLAQI   95 (262)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 442
>TIGR03586 PseI pseudaminic acid synthase.
Probab=39.78  E-value=27  Score=15.34  Aligned_cols=140  Identities=18%  Similarity=0.247  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHCCCEEEEECC-CHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCCCHHHCCHH
Q ss_conf             9999999988880965999858-557718776758579991899853000698999999987099899458531310976
Q gi|254780268|r   12 EIALRILRACKELGIPTVAVHS-TADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAK   90 (443)
Q Consensus        12 eia~riira~~elGi~tv~v~s-~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGyGfLsEn~~   90 (443)
                      ++|.+.|+.|++-|...|=..+ .+|.........+  +.+....     .+-+.+.+.-++...    |    +....+
T Consensus        17 ~~Ak~LI~~A~~sGaDaVKFQ~~~~d~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~l----~----~e~~~~   81 (327)
T TIGR03586        17 ERALAMIEAAAAAGADAIKLQTYTADTITLDSDRPD--FIIKGGL-----WDGRTLYELYQEAHT----P----WEWHKE   81 (327)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCCHHHEECCCCCHH--HHCCCCC-----CCCEEHHHHHHHHHC----C----HHHHHH
T ss_conf             999999999999299999933606666035665465--4114787-----788089999998647----8----999999


Q ss_pred             HHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEE
Q ss_conf             6688984592162689899987218998877664224433243-334557999873200330122000234578216888
Q gi|254780268|r   91 FAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPG-SGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIA  169 (443)
Q Consensus        91 fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~-~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv  169 (443)
                      +.+.|.+.||.|+- ++-      |... =+++.+.|++...= +...+.-.+++...+.+-|+++=       -||   
T Consensus        82 L~~~~k~~gI~f~~-t~f------d~~s-~~~l~~l~~~~~KIaS~d~~n~~Li~~iak~~kpviiS-------tG~---  143 (327)
T TIGR03586        82 LFERAKELGLTIFS-SPF------DETA-VDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMS-------TGI---  143 (327)
T ss_pred             HHHHHHHCCCEEEE-CCC------CHHH-HHHHHHCCCCEEEECCHHHCCHHHHHHHHCCCCCEEEE-------CCC---
T ss_conf             99999985997997-889------9799-99998707995998941536656999986648867996-------888---


Q ss_pred             EECHHHHHHHHHHHH
Q ss_conf             750668999998754
Q gi|254780268|r  170 YSENDLSEAIDQARS  184 (443)
Q Consensus       170 ~~~~el~~a~~~a~~  184 (443)
                      .+.+|+..+++....
T Consensus       144 s~~~EI~~av~~~~~  158 (327)
T TIGR03586       144 ATLEEIEEAVEAARE  158 (327)
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             754567888887765


No 443
>TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237   This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group..
Probab=39.75  E-value=19  Score=16.39  Aligned_cols=62  Identities=23%  Similarity=0.255  Sum_probs=33.9

Q ss_pred             HCHHHHHHHHHHCCCCC-CC-CCCCCCH-HHHHHHHHCCCCHHHHHCC--CCCC--CCEEEEE-EECHHHHHH
Q ss_conf             18998877664224433-24-3334557-9998732003301220002--3457--8216888-750668999
Q gi|254780268|r  114 GDKITAKKTAQQLGIPV-VP-GSGEVYP-HTAMPIAKEIGFPVLVKAS--AGGG--GRGMRIA-YSENDLSEA  178 (443)
Q Consensus       114 gDK~~~k~~a~~~GVP~-~p-~~~~~~~-~ea~~~a~~iGyPviiKp~--~gGG--G~Gi~vv-~~~~el~~a  178 (443)
                      =.|.++-++|+++|+.. +| |.  .+| +-....+ ..+|-++|=++  .|.+  -.|-++- .+-|+|...
T Consensus       102 YQK~Rid~vCrelGlks~APLW~--~dPle~~~~~V-~e~F~v~iv~V~A~GLdeswLGrridke~Id~L~~l  171 (227)
T TIGR00289       102 YQKSRIDKVCRELGLKSIAPLWH--KDPLEYLLEEV-AEKFEVIIVSVSAEGLDESWLGRRIDKECIDDLKDL  171 (227)
T ss_pred             HHHHHHHHHHHHHCCHHCCCCCC--CCHHHHHHHHH-HCCCEEEEEEEEEECCCCCCCCCEECHHHHHHHHHH
T ss_conf             12335778877714100276013--48179999986-233608999998411782236620066678988632


No 444
>PRK08322 acetolactate synthase; Reviewed
Probab=39.41  E-value=28  Score=15.30  Aligned_cols=31  Identities=26%  Similarity=0.243  Sum_probs=14.2

Q ss_pred             EEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             88875066899999875432125899816884
Q gi|254780268|r  167 RIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       167 ~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      ..+.+++++.+.+++|.+.|.+. .-++|+++
T Consensus       126 ~~v~~~~~~~~~~~~A~~~A~~~-~pGPV~l~  156 (547)
T PRK08322        126 RQIVSPDNIPEVVREAFRLAEEE-RPGAVHLE  156 (547)
T ss_pred             EECCCHHHHHHHHHHHHHHHHCC-CCCEEEEE
T ss_conf             98488999999999999997438-99728990


No 445
>PRK08636 aspartate aminotransferase; Provisional
Probab=39.32  E-value=28  Score=15.29  Aligned_cols=22  Identities=18%  Similarity=0.211  Sum_probs=16.3

Q ss_pred             EEECCC---HHHHHHHHHHHHHHCE
Q ss_conf             995599---8999999998765408
Q gi|254780268|r  386 IVHGKN---RKECMMRLNRALNEII  407 (443)
Q Consensus       386 I~~g~~---R~~Ai~~l~~aL~~~~  407 (443)
                      |+.+.+   -++|++|+.++|++++
T Consensus       378 isf~~~~e~l~ea~~Rl~~~l~e~~  402 (403)
T PRK08636        378 IALIENENRIRQAARNIKKFLKEFE  402 (403)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHC
T ss_conf             9971899999999999999999844


No 446
>pfam06050 HGD-D 2-hydroxyglutaryl-CoA dehydratase, D-component. Degradation of glutamate via the hydroxyglutarate pathway involves the syn-elimination of water from 2-hydroxyglutaryl-CoA. This anaerobic process is catalysed by 2-hydroxyglutaryl-CoA dehydratase, an enzyme with two components (A and D) that reversibly associate during reaction cycles. This component contains one non-reducible [4Fe-4S]2+ cluster and a reduced riboflavin 5'-monophosphate.
Probab=39.32  E-value=28  Score=15.29  Aligned_cols=15  Identities=27%  Similarity=0.162  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHCCCC
Q ss_conf             999999886515434
Q gi|254780268|r  254 GETCVKAMKKIDYRG  268 (443)
Q Consensus       254 ~~~A~~~~~~~g~~g  268 (443)
                      .++..++++..+.+|
T Consensus       272 ~~~~~~l~~~~~~dg  286 (345)
T pfam06050       272 LEYILKLAKEYGADG  286 (345)
T ss_pred             HHHHHHHHHHHCCCE
T ss_conf             999999999819999


No 447
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=39.31  E-value=28  Score=15.29  Aligned_cols=70  Identities=19%  Similarity=0.233  Sum_probs=48.5

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHH--HCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC
Q ss_conf             06866447099999999888809659998585577187767--5857999189985300069899999998709989945
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVR--LADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP   80 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~--~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP   80 (443)
                      ++++|++-|.....+.+.+.++|...++|..++++......  ..-+++... +      .|.+.| +-|--.++|++--
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd-~------t~~~~L-~~agi~~aD~vva   72 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGD-A------TDEDVL-EEAGIDDADAVVA   72 (225)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEEEEC-C------CCHHHH-HHCCCCCCCEEEE
T ss_conf             9899989857889999999878990899976889999863200044999926-8------898999-8679863899999


No 448
>PRK07945 hypothetical protein; Provisional
Probab=39.30  E-value=28  Score=15.29  Aligned_cols=73  Identities=21%  Similarity=0.206  Sum_probs=42.9

Q ss_pred             CCCCCC-CHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEE--ECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC
Q ss_conf             433345-579998732003301220002345782168887--50668999998754321258998168844342011033
Q gi|254780268|r  132 PGSGEV-YPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAY--SENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE  208 (443)
Q Consensus       132 p~~~~~-~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~--~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiE  208 (443)
                      -|+... +.++-.+.|.+.||-.+.=.-+   |+...+++  +++.|.+.++........ +.  .+   +-+.|   +|
T Consensus       105 ~wSDG~~sieeMa~aA~~lGyeYlaITDH---S~~l~vA~GLs~erL~~Q~~eI~~ln~~-~~--~~---rIL~G---iE  172 (335)
T PRK07945        105 DWSDGGSPIEEMMATAAALGHEYCALTDH---SPRLTVANGLSPERLRKQLDVIAELNER-LA--PF---RILTG---IE  172 (335)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCEEEEECCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHH-CC--CC---EEEEE---EE
T ss_conf             84579786999999999839827998048---8534566897999999999999999854-48--92---79975---35


Q ss_pred             EEEEEECC
Q ss_conf             15777347
Q gi|254780268|r  209 VQIFGDGM  216 (443)
Q Consensus       209 vqVl~D~~  216 (443)
                      |.|+.||.
T Consensus       173 vDIL~DGs  180 (335)
T PRK07945        173 VDILEDGS  180 (335)
T ss_pred             EEECCCCC
T ss_conf             32148988


No 449
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=39.25  E-value=28  Score=15.28  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=22.1

Q ss_pred             EEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             1688875066899999875432125899816884
Q gi|254780268|r  165 GMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       165 Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      -...+.+.+++.+.+++|.+.|.+. .-++|+++
T Consensus       135 ~~~~v~~~~~i~~~l~~A~~~A~s~-r~GPV~l~  167 (594)
T PRK09107        135 HNWLVKDVNDLARVIHEAFHVATSG-RPGPVVVD  167 (594)
T ss_pred             CEEEECCHHHHHHHHHHHHHHHHHC-CCCCEEEE
T ss_conf             4067589999999999999999718-99877998


No 450
>PRK06855 aminotransferase; Validated
Probab=39.17  E-value=28  Score=15.28  Aligned_cols=17  Identities=35%  Similarity=0.466  Sum_probs=12.5

Q ss_pred             EEECHHHHHHHHHHHHH
Q ss_conf             87506689999987543
Q gi|254780268|r  169 AYSENDLSEAIDQARSE  185 (443)
Q Consensus       169 v~~~~el~~a~~~a~~e  185 (443)
                      |.++++|++..+.|..+
T Consensus       187 v~s~e~l~~i~~~a~~~  203 (433)
T PRK06855        187 VYPKEILREIVDIAREY  203 (433)
T ss_pred             CCCHHHHHHHHHHHHHC
T ss_conf             67999999999999975


No 451
>PRK00077 eno phosphopyruvate hydratase; Provisional
Probab=39.11  E-value=23  Score=15.93  Aligned_cols=17  Identities=24%  Similarity=0.315  Sum_probs=11.7

Q ss_pred             ECCCHHHHHHHHHHHHH
Q ss_conf             55998999999998765
Q gi|254780268|r  388 HGKNRKECMMRLNRALN  404 (443)
Q Consensus       388 ~g~~R~~Ai~~l~~aL~  404 (443)
                      -++.|.|.+.|..|-|+
T Consensus       390 Ga~~R~ER~aKyNrLlr  406 (427)
T PRK00077        390 GSLSRSERVAKYNQLLR  406 (427)
T ss_pred             CCCCCHHHHHHHHHHHH
T ss_conf             89840788999999999


No 452
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=39.11  E-value=28  Score=15.27  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=30.5

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCC
Q ss_conf             6866447099999999888809659998585577187
Q gi|254780268|r    4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAM   40 (443)
Q Consensus         4 ~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~   40 (443)
                      ||||.+-|-+.+.+++.+--+|+..+.+ .|.|....
T Consensus         1 kvlvvG~GglG~e~~k~la~~Gvg~i~i-vD~d~i~~   36 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHV-IDMDTIDV   36 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEE-ECCCEECC
T ss_conf             9899928888999999999848985999-73993441


No 453
>PRK05575 cbiC precorrin-8X methylmutase; Validated
Probab=39.08  E-value=13  Score=17.62  Aligned_cols=92  Identities=14%  Similarity=0.246  Sum_probs=40.7

Q ss_pred             HHCCHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHC-CCEEECCCHHHHHHHHCHHHHHHHH--HHCCCCCCCCCC
Q ss_conf             0069899999998709989945853131097666889845-9216268989998721899887766--422443324333
Q gi|254780268|r   59 SYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDH-HIKFIGPSSEHIKIMGDKITAKKTA--QQLGIPVVPGSG  135 (443)
Q Consensus        59 sYldi~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~-Gi~fIGPs~~ai~~~gDK~~~k~~a--~~~GVP~~p~~~  135 (443)
                      +|++-+.+.+.|++.|..--         -+.+....++. ++..||-.|.++-.+-+-+.....-  -=.|+|  .|  
T Consensus        96 C~i~d~~v~~~Ak~~g~TRs---------~aa~~~a~~~~~~IvvIGNAPTAL~~Lleli~~g~~~PalVIG~P--VG--  162 (204)
T PRK05575         96 CYVSEEEVAKIAKEKGITRS---------MAAVEKAAEEGVEFFVFGNAPTALFKLKELIKEGKANPKFIIAVP--VG--  162 (204)
T ss_pred             EECCCCCHHHHHHHHCHHHH---------HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEECC--CC--
T ss_conf             86789646788774053599---------999997413189889993868999999999985899875799718--86--


Q ss_pred             CCCHHHHHHHHHCCCCHHHH-HCCCCCCC
Q ss_conf             45579998732003301220-00234578
Q gi|254780268|r  136 EVYPHTAMPIAKEIGFPVLV-KASAGGGG  163 (443)
Q Consensus       136 ~~~~~ea~~~a~~iGyPvii-Kp~~gGGG  163 (443)
                      .....|.++...+.+.|.+. +-..||+.
T Consensus       163 FVgA~ESKe~L~~~~vP~It~~GrkGGS~  191 (204)
T PRK05575        163 FVGAAESKEELEKLDIPYITVRGRKGGST  191 (204)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf             56739999999868999899825987499


No 454
>PRK00143 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Reviewed
Probab=39.08  E-value=7  Score=19.55  Aligned_cols=40  Identities=20%  Similarity=0.331  Sum_probs=26.9

Q ss_pred             CCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHH
Q ss_conf             557999873200330122000234578216888750668999998
Q gi|254780268|r  137 VYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQ  181 (443)
Q Consensus       137 ~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~  181 (443)
                      .+.+|.+++|+++|+|+--|+-    |.|+-.+-+ .++.+.++.
T Consensus       171 ~~K~eVR~iA~~~gL~~a~K~d----Sq~ICFi~~-~~y~~Fl~~  210 (355)
T PRK00143        171 LTKPEVREIAAEIGLPTAKKKD----STGICFIGE-RNFKDFLSR  210 (355)
T ss_pred             CCHHHHHHHHHHCCCCCCCCCC----CCCEEEECC-CCHHHHHHH
T ss_conf             7358999999975898899777----786044048-877899986


No 455
>pfam02563 Poly_export Polysaccharide biosynthesis/export protein. This is a family of periplasmic proteins involved in polysaccharide biosynthesis and/or export.
Probab=39.06  E-value=28  Score=15.26  Aligned_cols=60  Identities=23%  Similarity=0.360  Sum_probs=38.4

Q ss_pred             CCCCCCCCCC---EEEEECCCCC-CEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCE
Q ss_conf             2211112442---1588668998-44677760238770777684338999955998999999998765408
Q gi|254780268|r  341 PENFIPNPGE---ITYFHAPGGL-GIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEII  407 (443)
Q Consensus       341 p~~f~Ps~G~---i~~~~~p~~~-gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~aL~~~~  407 (443)
                      +.++.-++|-   |+.|..|+-. ..+||.    ...|..   |.++++-+.|.+-.++-+++...|+++.
T Consensus         9 ~~~Y~lgpGD~l~i~v~g~~~~~~~~~V~~----dG~I~l---P~vG~v~v~GlT~~e~~~~i~~~l~~~~   72 (83)
T pfam02563         9 SPDYRLGPGDVLRITVFGEPELSGEVRVDP----DGTISL---PLVGPVKVAGLTPEELEELIADKLAKYL   72 (83)
T ss_pred             CCCCEECCCCEEEEEEECCCCCEEEEEECC----CCCEEC---CCCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf             998888799999999947766407899999----972965---7664599807999999999999998650


No 456
>TIGR03549 conserved hypothetical protein TIGR03549. This family consists of remarkably well-conserved proteins from gamma and beta Proteobacteria, heavily skewed towards organisms of marine environments. This family has an OsmC-like N-terminal domain. It shares a central domain, modeled by pfam02624 and TIGR00702, with other families of smaller proteins. The function is unknown. Fifteen of the first sixteen members of this family are from selenouridine-positive genomes, but this correlation may be fortuitous.
Probab=39.05  E-value=26  Score=15.53  Aligned_cols=46  Identities=20%  Similarity=0.320  Sum_probs=21.5

Q ss_pred             CCCCCCHHHHHHHHHH--HHHHHHHHCCCCCCEEEEEEC---CCCE---EEEECCCCCC
Q ss_conf             4455889999999999--999886515434102458972---8834---9982276543
Q gi|254780268|r  241 HSPVISAQDRTEIGET--CVKAMKKIDYRGAGTIEFLYE---NGQF---YFIEMNTRLQ  291 (443)
Q Consensus       241 Pap~l~~~~~~~i~~~--A~~~~~~~g~~g~~tvEFl~~---~~~~---yflEvN~Rlq  291 (443)
                      .-|.++.++.++--..  +++..++.||-    | +.+|   +|+|   .+.=||||-+
T Consensus       360 sLP~IP~eVlaryP~I~~~I~~Le~~Gfp----v-~v~DASLGG~fPVmcVtL~NP~ng  413 (718)
T TIGR03549       360 VLPDVPQEVLAKYPGILAGIKALEEQGFP----V-LVKDASLGGQFPVMCVTLMNPRTG  413 (718)
T ss_pred             CCCCCCHHHHHHCCCHHHHHHHHHHCCCC----E-EEEECCCCCCCCEEEEEEECCCCC
T ss_conf             88887699998573099999999867982----7-998545689775589997717999


No 457
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=39.01  E-value=28  Score=15.26  Aligned_cols=142  Identities=20%  Similarity=0.290  Sum_probs=73.4

Q ss_pred             CCEEEEE--ECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE
Q ss_conf             9706866--44709999999988880965999858557718776758579991899853000698999999987099899
Q gi|254780268|r    1 MISKILI--ANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI   78 (443)
Q Consensus         1 m~~~iLi--anrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai   78 (443)
                      ||||-||  -+.--| ..+.+.+.++|++-+.-    -..+.+.+.+.    + +....+.|.+.+.|+.    -.+-.+
T Consensus         3 ~ikrALISV~DKtgl-~~la~~L~~~g~eiiST----GGTak~l~~~g----i-~v~~Vs~~T~fpEil~----GRVKTL   68 (514)
T PRK00881          3 MIKRALISVSDKTGI-VEFAKALVALGVEILST----GGTAKLLAEAG----I-PVTEVSDVTGFPEILD----GRVKTL   68 (514)
T ss_pred             CCCEEEEEEECCCCH-HHHHHHHHHCCCEEEEC----CHHHHHHHHCC----C-CEEEHHHCCCCHHHHC----CCCCCC
T ss_conf             764799998866498-99999999889899987----27899999879----9-6588886049806529----815646


Q ss_pred             ECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCC--------CCCC-----CCCHHHHHHH
Q ss_conf             45853131097666889845921626898999872189988776642244332--------4333-----4557999873
Q gi|254780268|r   79 HPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVV--------PGSG-----EVYPHTAMPI  145 (443)
Q Consensus        79 hPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~--------p~~~-----~~~~~ea~~~  145 (443)
                      ||-              --.||-+-          .|+..-.+-++++|++.+        |+..     ..+.+++.+.
T Consensus        69 HP~--------------IhgGIL~~----------r~~~~h~~~l~~~~i~~IDlVvvNLYPFe~~v~~~~~~~~~~IEn  124 (514)
T PRK00881         69 HPK--------------IHGGILAR----------RDNPEHVAALEEHGIEPIDLVVVNLYPFEETVAKPGVTLEEAIEN  124 (514)
T ss_pred             CCH--------------HHHHHHCC----------CCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCCHHHHHHH
T ss_conf             830--------------22666137----------898889999997699963389981454698750489998999884


Q ss_pred             HHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHH
Q ss_conf             2003301220002345782168887506689999987
Q gi|254780268|r  146 AKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQA  182 (443)
Q Consensus       146 a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a  182 (443)
                      . .||-|-||+++.=-.- -+.++.+++|....++..
T Consensus       125 I-DIGGpsmiRAAAKN~~-~V~Vi~dp~dY~~~~~~l  159 (514)
T PRK00881        125 I-DIGGPTMVRAAAKNHK-DVTVVVDPADYDAVLEEL  159 (514)
T ss_pred             C-CCCCHHHHHHHHHCCC-CEEEECCHHHHHHHHHHH
T ss_conf             4-7774999999874478-759964789999999999


No 458
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=38.98  E-value=28  Score=15.26  Aligned_cols=29  Identities=17%  Similarity=0.281  Sum_probs=26.0

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             06866447099999999888809659998
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAV   31 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v   31 (443)
                      |++||.+-|++|.|=++.+-+.|-...+|
T Consensus        11 k~vLVVGGG~vA~rK~~~Ll~~gA~VtVv   39 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHITVI   39 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             86999889899999999998689969998


No 459
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms.  Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent.  As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=38.90  E-value=28  Score=15.25  Aligned_cols=104  Identities=16%  Similarity=0.201  Sum_probs=55.5

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf             06866447099999999888809659998585577187767585799918998530006989999999870998994585
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY   82 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy   82 (443)
                      +|+.|-+-|-.+....+.+.++|.+.|+| ||.+.          .+.-++       .+....+...++.+-....|+.
T Consensus        24 ~~vaVqGfGnVG~~~a~~l~~~Gakvvav-sD~~G----------~i~~~~-------g~~~~~~~~~~~~~~~~~~~~~   85 (217)
T cd05211          24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAV-SDPDG----------YIYDPG-------ITTEELINYAVALGGSARVKVQ   85 (217)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEE-ECCCC----------EEECCC-------CCCHHHHHHHHHHCCCCCCCCC
T ss_conf             99999898899999999999859989999-85787----------177899-------9869999999981896536665


Q ss_pred             CHHHCCHHHHHHHHHCCCEEECCCHHHHHHH-----HCHHHHHHHHHHCCCCCC
Q ss_conf             3131097666889845921626898999872-----189988776642244332
Q gi|254780268|r   83 GFLSENAKFAEILEDHHIKFIGPSSEHIKIM-----GDKITAKKTAQQLGIPVV  131 (443)
Q Consensus        83 GfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~-----gDK~~~k~~a~~~GVP~~  131 (443)
                      -+++...-|...|   .|- + |+  +++..     -+++++|-+++.++-|+.
T Consensus        86 ~~~~~~~~~~~~~---DIl-i-Pa--Al~~~I~~~~a~~i~ak~I~EgAN~P~t  132 (217)
T cd05211          86 DYFPGEAILGLDV---DIF-A-PC--ALGNVIDLENAKKLKAKVVAEGANNPTT  132 (217)
T ss_pred             CCCCCCCCCCCCC---CEE-E-EC--CCCCCCCHHHHHHHCCEEEECCCCCCCC
T ss_conf             3059865003677---689-6-42--4458879899987177289506789989


No 460
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=38.86  E-value=28  Score=15.24  Aligned_cols=33  Identities=18%  Similarity=0.303  Sum_probs=27.5

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCE-EEEECCCH
Q ss_conf             0686644709999999988880965-99985855
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIP-TVAVHSTA   35 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~-tv~v~s~~   35 (443)
                      ++|+|.+-|.-+.....++|++|.. .|.+.++.
T Consensus         4 ~~iVIIG~G~AG~~aA~~lR~~g~~g~Itli~~E   37 (400)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDE   37 (400)
T ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             7299997759999999999806949979999899


No 461
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=38.84  E-value=28  Score=15.24  Aligned_cols=172  Identities=19%  Similarity=0.271  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHCCCEEEEE---CCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHC----CCCEEECCCC-
Q ss_conf             99999999888809659998---585577187767585799918998530006989999999870----9989945853-
Q gi|254780268|r   12 EIALRILRACKELGIPTVAV---HSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVT----GADAIHPGYG-   83 (443)
Q Consensus        12 eia~riira~~elGi~tv~v---~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~----~~daihPGyG-   83 (443)
                      +...++++++.+-|...+=+   +|||=..-+-.+.|.+.. |      ++..+.+.++++.++.    +..-+.=+|- 
T Consensus        14 ~~~~~~~~~l~~~G~d~iEiGiPfsDP~aDGpvIq~A~~~a-L------~~g~~~~~~~~~~~~~r~~~~~pivlM~Y~N   86 (242)
T cd04724          14 ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERA-L------ANGVTLKDVLELVKEIRKKNTIPIVLMGYYN   86 (242)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH-H------HCCCCHHHHHHHHHHHHHCCCCCEEEEEECH
T ss_conf             99999999999769999997899888776589999999999-9------7699499999999998734798889998445


Q ss_pred             -HHHC-CHHHHHHHHHCCCE-EECCC--HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHH-CCCCHHH--
Q ss_conf             -1310-97666889845921-62689--89998721899887766422443324333455799987-320-0330122--
Q gi|254780268|r   84 -FLSE-NAKFAEILEDHHIK-FIGPS--SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMP-IAK-EIGFPVL--  154 (443)
Q Consensus        84 -fLsE-n~~fa~~~e~~Gi~-fIGPs--~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~-~a~-~iGyPvi--  154 (443)
                       ++.- -..|++.|.++|+. +|=|.  .+      .....+..++++|+..++.....++++.++ .++ .-||=..  
T Consensus        87 ~i~~~G~e~F~~~~~~~Gv~GviipDLP~e------e~~~~~~~~~~~~i~~I~lvsPtt~~~ri~~i~~~s~gfiY~vs  160 (242)
T cd04724          87 PILQYGLERFLRDAKEAGVDGLIIPDLPPE------EAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVS  160 (242)
T ss_pred             HHHHHCHHHHHHHHHHCCCCEEEECCCCHH------HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf             766528999999999759975870699957------84689999986598388996898878999999974798499985


Q ss_pred             HHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEC
Q ss_conf             00023457821688875066899999875432125899816884434201103
Q gi|254780268|r  155 VKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHI  207 (443)
Q Consensus       155 iKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhi  207 (443)
                      .+.+-     |.+. ...+++.+.++..++..     +-++++===|..+.|+
T Consensus       161 ~~GvT-----G~~~-~~~~~~~~~i~~ik~~t-----~~Pv~vGFGI~~~e~v  202 (242)
T cd04724         161 RTGVT-----GART-ELPDDLKELIKRIRKYT-----DLPIAVGFGISTPEQA  202 (242)
T ss_pred             CCCCC-----CCCC-CCHHHHHHHHHHHHHHC-----CCCEEEECCCCCHHHH
T ss_conf             77777-----8775-56499999999998716-----8974874387999999


No 462
>PRK09492 treR trehalose repressor; Provisional
Probab=38.80  E-value=12  Score=17.95  Aligned_cols=62  Identities=16%  Similarity=0.145  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHC-CEEEECCCCCCCCHHC-CHHHHHHHHHHCCCCEEE
Q ss_conf             9999999988880965999858557718776758-5799918998530006-989999999870998994
Q gi|254780268|r   12 EIALRILRACKELGIPTVAVHSTADSGAMHVRLA-DESVCIGPPSSKDSYL-NIQQIVAACEVTGADAIH   79 (443)
Q Consensus        12 eia~riira~~elGi~tv~v~s~~D~~a~~~~~A-De~~~i~~~~~~~sYl-di~~ii~~a~~~~~daih   79 (443)
                      |..-||.++++||||..     +.-..+.-.+.. --.+.++. .....|. =+..+.+.+.++|.+.+.
T Consensus        34 eTr~rV~~~a~elgY~P-----n~~Ar~L~~~~t~~Ig~i~~~-~~~~~~~~~~~~i~~~~~~~gy~~~i   97 (315)
T PRK09492         34 RTRERVEAVINQHGFSP-----SKSARAMRGQSDKVVGIIVSR-LDSPSENLAVQTMLPAFYQQGYDPII   97 (315)
T ss_pred             HHHHHHHHHHHHHCCCC-----CHHHHHHHCCCCCEEEEECCC-CCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             99999999999969980-----778897504888646662267-78836789999999999974981899


No 463
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232   Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=38.79  E-value=17  Score=16.75  Aligned_cols=46  Identities=30%  Similarity=0.447  Sum_probs=21.5

Q ss_pred             HHCCEEEECCCCCC----CCHHCCHHHHHHHHHHCCCCE--EECCCC-----HHHCCHHH
Q ss_conf             75857999189985----300069899999998709989--945853-----13109766
Q gi|254780268|r   43 RLADESVCIGPPSS----KDSYLNIQQIVAACEVTGADA--IHPGYG-----FLSENAKF   91 (443)
Q Consensus        43 ~~ADe~~~i~~~~~----~~sYldi~~ii~~a~~~~~da--ihPGyG-----fLsEn~~f   91 (443)
                      -+-||||.|--+-.    .|+   ||.|++.+.+..-+-  |..||-     ||+-||-+
T Consensus       109 LFiDEAYSLaRGGEKDFGKEA---IDtLVK~mEd~~~~lvlILAGY~~EM~yFL~~NPGL  165 (261)
T TIGR02881       109 LFIDEAYSLARGGEKDFGKEA---IDTLVKAMEDQRNELVLILAGYSDEMDYFLSLNPGL  165 (261)
T ss_pred             HHHHHHHHHHCCCCCCCCCHH---HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCC
T ss_conf             055777776148888766208---889999876156986899708768999986207797


No 464
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=38.77  E-value=28  Score=15.23  Aligned_cols=33  Identities=12%  Similarity=0.264  Sum_probs=28.2

Q ss_pred             CCEE--EEEECCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             9706--86644709999999988880965999858
Q gi|254780268|r    1 MISK--ILIANRGEIALRILRACKELGIPTVAVHS   33 (443)
Q Consensus         1 m~~~--iLianrGeia~riira~~elGi~tv~v~s   33 (443)
                      |-++  |+|++-|+-..-....|.++|.++.+|..
T Consensus         1 Ms~~YDviVIG~GpAG~~AA~~aa~~G~kValiE~   35 (475)
T PRK06327          1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             99618899999888999999999978991999972


No 465
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related    enzyme [Amino acid transport and metabolism]
Probab=38.72  E-value=18  Score=16.65  Aligned_cols=20  Identities=30%  Similarity=0.225  Sum_probs=16.2

Q ss_pred             HHHHHHHHHCCCEEEEECCC
Q ss_conf             99999888809659998585
Q gi|254780268|r   15 LRILRACKELGIPTVAVHST   34 (443)
Q Consensus        15 ~riira~~elGi~tv~v~s~   34 (443)
                      .||-|.|+|++.+||.|.|.
T Consensus        33 ~~lG~~~~e~rp~tIiV~Sa   52 (268)
T COG3384          33 RELGRELPELRPDTIIVFSA   52 (268)
T ss_pred             HHHHHHHHHCCCCEEEEEEC
T ss_conf             99977656608987999835


No 466
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=38.67  E-value=28  Score=15.22  Aligned_cols=37  Identities=11%  Similarity=0.179  Sum_probs=26.7

Q ss_pred             EEEEECCCHH-----HHHHHHHHHHCCCEEEEECCCHHHCCC
Q ss_conf             6866447099-----999999888809659998585577187
Q gi|254780268|r    4 KILIANRGEI-----ALRILRACKELGIPTVAVHSTADSGAM   40 (443)
Q Consensus         4 ~iLianrGei-----a~riira~~elGi~tv~v~s~~D~~a~   40 (443)
                      ||-|.+.|=|     +.-+.-++-++|.++..|-.||...++
T Consensus         2 kiaiyGKGGIGKSTttaNl~aaLA~~G~kVl~IgcDpk~Dst   43 (267)
T cd02032           2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDST   43 (267)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
T ss_conf             799977996578778999999999879959997789951556


No 467
>CHL00067 rps2 ribosomal protein S2
Probab=38.54  E-value=28  Score=15.21  Aligned_cols=37  Identities=11%  Similarity=0.124  Sum_probs=21.9

Q ss_pred             HHHHHHHHHCC--CEEECCCHHHHHHHHCHHHHHHHHHHCCCCCC
Q ss_conf             76668898459--21626898999872189988776642244332
Q gi|254780268|r   89 AKFAEILEDHH--IKFIGPSSEHIKIMGDKITAKKTAQQLGIPVV  131 (443)
Q Consensus        89 ~~fa~~~e~~G--i~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~  131 (443)
                      ..|...+...|  +-|+|..+.+-+.      .++.+.+.|-|-+
T Consensus        54 ~~~i~~~~~~~g~ILfVgTk~~~~~~------i~~~A~~~~~~yV   92 (227)
T CHL00067         54 CDLVFDAASRGKKFLFVGTKKQAADL------VASAAIRARCHYV   92 (227)
T ss_pred             HHHHHHHHHCCCEEEEEECCHHHHHH------HHHHHHHHCCCEE
T ss_conf             99999998549947999765878999------9999998199715


No 468
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=38.49  E-value=28  Score=15.20  Aligned_cols=19  Identities=32%  Similarity=0.172  Sum_probs=11.1

Q ss_pred             CCHHHHHHHHHHCCCCEEE
Q ss_conf             6989999999870998994
Q gi|254780268|r   61 LNIQQIVAACEVTGADAIH   79 (443)
Q Consensus        61 ldi~~ii~~a~~~~~daih   79 (443)
                      ..+.+++++|.+.+...|.
T Consensus        29 e~~~Avi~AAee~~sPvIl   47 (285)
T PRK07709         29 EWTQAILAAAEEEKSPVIL   47 (285)
T ss_pred             HHHHHHHHHHHHHCCCEEE
T ss_conf             9999999999997889999


No 469
>CHL00175 minD septum-site determining protein; Validated
Probab=38.37  E-value=29  Score=15.19  Aligned_cols=23  Identities=9%  Similarity=0.121  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             99999999888809659998585
Q gi|254780268|r   12 EIALRILRACKELGIPTVAVHST   34 (443)
Q Consensus        12 eia~riira~~elGi~tv~v~s~   34 (443)
                      -+++-..-++.++|.++.++..|
T Consensus        29 T~a~NLa~aLA~~G~kVlliD~D   51 (279)
T CHL00175         29 TTTANLGMSIARLGYRVALIDAD   51 (279)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECC
T ss_conf             99999999999789988999578


No 470
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=38.02  E-value=29  Score=15.15  Aligned_cols=29  Identities=10%  Similarity=0.148  Sum_probs=26.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             68664470999999998888096599985
Q gi|254780268|r    4 KILIANRGEIALRILRACKELGIPTVAVH   32 (443)
Q Consensus         4 ~iLianrGeia~riira~~elGi~tv~v~   32 (443)
                      -++|++-|+-.......|.++|.++.+|-
T Consensus         5 DviVIG~GpaG~~aA~~aa~~G~~ValIE   33 (441)
T PRK08010          5 QAVIIGFGKAGKTLAVTLAKAGWRVALIE   33 (441)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf             98999978899999999997899299997


No 471
>TIGR00274 TIGR00274 glucokinase regulator homolog; InterPro: IPR005488 The glucokinase regulatory protein (GCKR)  is a vertebrate protein that inhibits glucokinase by forming an inactive complex with the enzyme. It is a protein of about 70 Kd which seems to be evolutionary related to a number of uncharacterised bacterial proteins which are about half the size of GCKR..
Probab=37.91  E-value=29  Score=15.14  Aligned_cols=41  Identities=22%  Similarity=0.355  Sum_probs=27.0

Q ss_pred             CCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEEC
Q ss_conf             4709999999988880965999858557718776758579991
Q gi|254780268|r    9 NRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCI   51 (443)
Q Consensus         9 nrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i   51 (443)
                      +|=|=+.=..+.||.+|-+||.|-++|.+..+.  .||.++.+
T Consensus       137 GrTPYv~gaL~yAr~~Ga~Ti~iacnp~S~~s~--~Ad~~I~~  177 (291)
T TIGR00274       137 GRTPYVIGALEYARKLGAKTIAIACNPESAVSK--QADVAIEV  177 (291)
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC--CCCCCCEE
T ss_conf             975789999999997078257774177422312--14430023


No 472
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=37.75  E-value=29  Score=15.13  Aligned_cols=16  Identities=13%  Similarity=0.256  Sum_probs=9.3

Q ss_pred             EECHHHHHHHHHHHHH
Q ss_conf             7506689999987543
Q gi|254780268|r  170 YSENDLSEAIDQARSE  185 (443)
Q Consensus       170 ~~~~el~~a~~~a~~e  185 (443)
                      ++.+|..+.++.|+..
T Consensus       157 kt~~ea~~l~~dA~~l  172 (266)
T PRK00311        157 RDEEAAEQLLEDAKAL  172 (266)
T ss_pred             CCHHHHHHHHHHHHHH
T ss_conf             9999999999999999


No 473
>PRK06361 hypothetical protein; Provisional
Probab=37.70  E-value=29  Score=15.12  Aligned_cols=16  Identities=25%  Similarity=0.596  Sum_probs=10.2

Q ss_pred             HHHHHHHHCCCEEEEE
Q ss_conf             9999888809659998
Q gi|254780268|r   16 RILRACKELGIPTVAV   31 (443)
Q Consensus        16 riira~~elGi~tv~v   31 (443)
                      ..+++|+++|++.++|
T Consensus        19 Ema~aA~~~G~~yiaI   34 (216)
T PRK06361         19 ELVRRARVLGYRAIAI   34 (216)
T ss_pred             HHHHHHHHCCCCEEEE
T ss_conf             9999999869909999


No 474
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=37.57  E-value=29  Score=15.11  Aligned_cols=43  Identities=23%  Similarity=0.263  Sum_probs=20.7

Q ss_pred             CCCCEEEECCCCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf             99844677760238770777684338999955998999999998
Q gi|254780268|r  358 GGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNR  401 (443)
Q Consensus       358 ~~~gvRvDt~~~~G~~i~~~yDsmlaKiI~~g~~R~~Ai~~l~~  401 (443)
                      .-.|+|++..-.+-..-|+...| +-++.+=++|.++|-+-+.+
T Consensus       401 ~~DGik~~~~dgwiliRpSgTEP-~iriy~Ea~~~e~a~~l~~~  443 (445)
T cd05803         401 TLDGLRLDSEDSWVHVRPSNTEP-IVRIIAEAPTQDEAEALADR  443 (445)
T ss_pred             CCCEEEEECCCEEEEEECCCCCE-EEEEEEEECCHHHHHHHHHH
T ss_conf             14638997598899998119811-68999975999999999875


No 475
>pfam07071 DUF1341 Protein of unknown function (DUF1341). This family consists of several hypothetical bacterial proteins of around 220 residues in length. The function of this family is unknown.
Probab=37.45  E-value=30  Score=15.09  Aligned_cols=159  Identities=19%  Similarity=0.137  Sum_probs=75.6

Q ss_pred             ECCCHHHHHHHHHHHHCCCEEEEE----CCCHHHCC----CCHHHCCE--EEECCCCCCCCHHCCHHHHHHHHHHC---C
Q ss_conf             447099999999888809659998----58557718----77675857--99918998530006989999999870---9
Q gi|254780268|r    8 ANRGEIALRILRACKELGIPTVAV----HSTADSGA----MHVRLADE--SVCIGPPSSKDSYLNIQQIVAACEVT---G   74 (443)
Q Consensus         8 anrGeia~riira~~elGi~tv~v----~s~~D~~a----~~~~~ADe--~~~i~~~~~~~sYldi~~ii~~a~~~---~   74 (443)
                      |+.-+=|..|+.++.  |.-.+.|    |++.+.--    .+-...|.  ++-||.+.+..+.    .+.+++++.   .
T Consensus        11 A~d~~NAkei~eAae--G~v~vGvlskny~tveeav~~mk~y~~~~~~~vSVGLGaGDp~Q~~----~Va~Ia~~~~P~H   84 (218)
T pfam07071        11 AGSIENAKEIYEAAE--GHVLVGVLSKNYPTVEEAVEDMKEYQAEIDNAISVGLGAGDPNQSA----MVADISRHVQPQH   84 (218)
T ss_pred             CCCHHHHHHHHHHHC--CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHH----HHHHHHHHCCCCC
T ss_conf             286552999998745--8679888606789889999999999974898568842899979999----9999998749765


Q ss_pred             CCEEECCCCHHH----CCHHHHH----HHHHCCCEEE--CCCH-HHHHHHHCHHHHHHHHHHCCCCCCCCCC---CCCHH
Q ss_conf             989945853131----0976668----8984592162--6898-9998721899887766422443324333---45579
Q gi|254780268|r   75 ADAIHPGYGFLS----ENAKFAE----ILEDHHIKFI--GPSS-EHIKIMGDKITAKKTAQQLGIPVVPGSG---EVYPH  140 (443)
Q Consensus        75 ~daihPGyGfLs----En~~fa~----~~e~~Gi~fI--GPs~-~ai~~~gDK~~~k~~a~~~GVP~~p~~~---~~~~~  140 (443)
                      +.-++||-||--    .+-.+..    .--+-|...|  ||.+ +.-+..-+=..+-.+++..|++.+.++.   ....+
T Consensus        85 VNQvFt~ag~sr~~Lg~~~T~vN~LvsPTG~~G~VkIsTGp~Ss~~~~~iV~vetAiaml~dmG~~SiKffPm~Gl~~le  164 (218)
T pfam07071        85 INQVFTGVGTSRALLGQNDTVVNGLVSPTGKVGEVKISTGPLSSQKEDAIVPVETAIAMLKDMGGSSVKFFPMGGLKHLD  164 (218)
T ss_pred             CCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf             46415422777887079861787666578865358835677544577751309999999997298805664267611099


Q ss_pred             HHH---HHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHH
Q ss_conf             998---7320033012200023457821688875066899999875
Q gi|254780268|r  141 TAM---PIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQAR  183 (443)
Q Consensus       141 ea~---~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~  183 (443)
                      |..   +++.+.||  .+-|..|   +      +.+.+++.++.+.
T Consensus       165 E~~avA~aca~~g~--~lEPTGG---I------dl~N~~~I~~i~l  199 (218)
T pfam07071       165 EYRAVAKACAEHGF--YLEPTGG---I------DLDNFEEIVQIAL  199 (218)
T ss_pred             HHHHHHHHHHHCCC--EECCCCC---C------CHHHHHHHHHHHH
T ss_conf             99999999997693--6666788---4------6777999999999


No 476
>PRK05939 hypothetical protein; Provisional
Probab=37.37  E-value=30  Score=15.09  Aligned_cols=20  Identities=15%  Similarity=0.268  Sum_probs=12.8

Q ss_pred             EEEECCCHHHHHHHHHHHHH
Q ss_conf             99955998999999998765
Q gi|254780268|r  385 LIVHGKNRKECMMRLNRALN  404 (443)
Q Consensus       385 iI~~g~~R~~Ai~~l~~aL~  404 (443)
                      +-+-=+|-++=++-+.+||+
T Consensus       375 lSvGlEd~~DLi~DL~qAL~  394 (396)
T PRK05939        375 VSVGIEDTADLIADFEQALD  394 (396)
T ss_pred             EEEEECCHHHHHHHHHHHHH
T ss_conf             99410999999999999984


No 477
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain.  FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2  is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=37.30  E-value=30  Score=15.08  Aligned_cols=68  Identities=21%  Similarity=0.183  Sum_probs=32.0

Q ss_pred             EEECCCHHHHHHHHHHHHCCCEEEE----ECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEE
Q ss_conf             6644709999999988880965999----858557718776758579991899853000698999999987099899
Q gi|254780268|r    6 LIANRGEIALRILRACKELGIPTVA----VHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI   78 (443)
Q Consensus         6 LianrGeia~riira~~elGi~tv~----v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~dai   78 (443)
                      |..-.||+++  .|+|.+.|+-.++    .+|-.|-......-...-+.|...... .  -...+++-|++.|+.++
T Consensus        77 l~hp~gE~a~--AraA~~~gi~~~lSt~ss~slEdVa~a~~~~~~~wfQLY~~~dr-~--~~~~li~RA~~aG~~al  148 (344)
T cd02922          77 LAHPDGELNL--ARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDR-T--KTEELLKRAEKLGAKAI  148 (344)
T ss_pred             HCCCCHHHHH--HHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCH-H--HHHHHHHHHHHCCCCEE
T ss_conf             3288456999--99999748865740577788899998656898669998247767-9--99999999998699889


No 478
>TIGR00032 argG argininosuccinate synthase; InterPro: IPR001518   Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate , .   In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation.   AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process.
Probab=37.29  E-value=30  Score=15.08  Aligned_cols=97  Identities=21%  Similarity=0.183  Sum_probs=64.9

Q ss_pred             CCHHHHHHHHHHCCCCEEECCCCHHHCCHH--H--HHHHHHCCCEEECC--CHHHHHHHHCHHHHHHHHHHCCCCCCCCC
Q ss_conf             698999999987099899458531310976--6--68898459216268--98999872189988776642244332433
Q gi|254780268|r   61 LNIQQIVAACEVTGADAIHPGYGFLSENAK--F--AEILEDHHIKFIGP--SSEHIKIMGDKITAKKTAQQLGIPVVPGS  134 (443)
Q Consensus        61 ldi~~ii~~a~~~~~daihPGyGfLsEn~~--f--a~~~e~~Gi~fIGP--s~~ai~~~gDK~~~k~~a~~~GVP~~p~~  134 (443)
                      |=...++++|++.||+||==|=++= =|.+  |  .-...+.+++.|-|  ..+-++.++-|...-+-+.+.|||++--.
T Consensus       100 lIA~~lVe~Ak~~Ga~AvaHGCTGK-GNDQ~RFe~~~~~~~p~LkviaP~R~~~~~e~lgGR~e~~eYa~~~Gip~p~~~  178 (420)
T TIGR00032       100 LIAKKLVEVAKKEGAEAVAHGCTGK-GNDQVRFERSIRALNPDLKVIAPWRDLNLTEELGGREEEIEYAAQKGIPVPMTK  178 (420)
T ss_pred             HHHHHHHHHHHHCCCEEEECCCCCC-CCCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf             9999999998466954987076877-741357658887526898587473464677640594889999996688876546


Q ss_pred             CC-CCHHH-HHH---HHHCCCCH-HHHHCC
Q ss_conf             34-55799-987---32003301-220002
Q gi|254780268|r  135 GE-VYPHT-AMP---IAKEIGFP-VLVKAS  158 (443)
Q Consensus       135 ~~-~~~~e-a~~---~a~~iGyP-viiKp~  158 (443)
                      .. -|.|+ ...   -+..+-.| -..||.
T Consensus       179 ~K~YSiD~Nl~grs~Ea~~LEdP~~~~Ppe  208 (420)
T TIGR00032       179 EKPYSIDENLWGRSIEAGILEDPSDTEPPE  208 (420)
T ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf             777762366775555055357887888814


No 479
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=37.23  E-value=30  Score=15.07  Aligned_cols=59  Identities=10%  Similarity=0.053  Sum_probs=30.6

Q ss_pred             HHHHHHHHCCCCC----CCCCCCCCHHHHHHHHHCC-CCHHHHHCCCCCCCCEEEEEEECHHHHHHH
Q ss_conf             8877664224433----2433345579998732003-301220002345782168887506689999
Q gi|254780268|r  118 TAKKTAQQLGIPV----VPGSGEVYPHTAMPIAKEI-GFPVLVKASAGGGGRGMRIAYSENDLSEAI  179 (443)
Q Consensus       118 ~~k~~a~~~GVP~----~p~~~~~~~~ea~~~a~~i-GyPviiKp~~gGGG~Gi~vv~~~~el~~a~  179 (443)
                      ++.++++..|+++    .||....+.++..++.++- .+-.+. -++.=-+-|+  .++-+++.+..
T Consensus        94 R~~~ia~~~g~~v~~l~~~~g~~~~~~~ve~~L~~~~~~~~v~-~vH~ETSTGv--ln~l~~i~~~~  157 (368)
T PRK13479         94 RIAKIAEYLGIAHVVLDTGEDEPPDAAAVEAALAADPRITHVA-LVHCETTTGI--LNPLDEIAAVV  157 (368)
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEE-EEECCCCCCC--CCCHHHHHHHH
T ss_conf             9999999819975998789999889999999997499967899-9850677203--16799999999


No 480
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=37.21  E-value=30  Score=15.07  Aligned_cols=43  Identities=14%  Similarity=0.152  Sum_probs=30.1

Q ss_pred             HHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf             20002345782168887506689999987543212589981688443420
Q gi|254780268|r  154 LVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLEN  203 (443)
Q Consensus       154 iiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~  203 (443)
                      ..|-+.+-|.+|. .|++++||..++++|+..      +++++||=-++.
T Consensus       143 f~~~A~a~G~~g~-~V~~~~eL~~Al~~Al~~------~gP~vIev~vdP  185 (205)
T cd02003         143 FAANARSLGARVE-KVKTIEELKAALAKAKAS------DRTTVIVIKTDP  185 (205)
T ss_pred             HHHHHHHCCCEEE-EECCHHHHHHHHHHHHHC------CCCEEEEEEECC
T ss_conf             9999987497089-938889999999999968------996999999379


No 481
>pfam00551 Formyl_trans_N Formyl transferase. This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.
Probab=37.15  E-value=30  Score=15.06  Aligned_cols=80  Identities=19%  Similarity=0.208  Sum_probs=47.8

Q ss_pred             EEEEECCCHHHHHHHHHHHHCC--CEEEEECCCHH-HCCCCH--HHCCEEEECCCCC-CCCHHCCHHHHHHHHHHCCCCE
Q ss_conf             6866447099999999888809--65999858557-718776--7585799918998-5300069899999998709989
Q gi|254780268|r    4 KILIANRGEIALRILRACKELG--IPTVAVHSTAD-SGAMHV--RLADESVCIGPPS-SKDSYLNIQQIVAACEVTGADA   77 (443)
Q Consensus         4 ~iLianrGeia~riira~~elG--i~tv~v~s~~D-~~a~~~--~~ADe~~~i~~~~-~~~sYldi~~ii~~a~~~~~da   77 (443)
                      -||+-++|--+..+++++++-+  ++.++|.|+.+ ......  +.--....+.... ...+ +.-+++++..++.++|-
T Consensus         4 avl~SG~Gsnl~~Il~a~~~~~l~~~I~~Visn~~~~~~~~~a~~~~ip~~~~~~~~~~~r~-~~~~~~~~~l~~~~~Dl   82 (181)
T pfam00551         4 AVLISGTGSNLQALLDALRKGGHEVEIVAVVTNKDKAAGLERAEQAGIPVEVFEHKNFTPRS-QFDSELADSLAALAPDL   82 (181)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCHH-HHHHHHHHHHHHHCCCE
T ss_conf             99990796659999999981999988999995895728888999859998980677899834-61899999999749999


Q ss_pred             E-ECCCCH
Q ss_conf             9-458531
Q gi|254780268|r   78 I-HPGYGF   84 (443)
Q Consensus        78 i-hPGyGf   84 (443)
                      | ..||+.
T Consensus        83 iv~~g~~~   90 (181)
T pfam00551        83 IVLAGYMR   90 (181)
T ss_pred             EEEECHHH
T ss_conf             99801633


No 482
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=37.03  E-value=16  Score=17.06  Aligned_cols=54  Identities=22%  Similarity=0.261  Sum_probs=37.8

Q ss_pred             HHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
Q ss_conf             7320033012200023457821688875066899999875432125899816884434201
Q gi|254780268|r  144 PIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENP  204 (443)
Q Consensus       144 ~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~  204 (443)
                      +.+..+||+-+.|.+.       ..+.....+.+.+..+.++-.+-.|-++||+=+|=+.+
T Consensus       124 e~~~~l~f~h~~k~a~-------~~lq~a~~l~~l~~~~tqeVr~~tGfDRVMlYrF~~d~  177 (750)
T COG4251         124 ETASFLGFYHLAKLAM-------NRLQSAANLRDLLSRTTQEVRRMTGFDRVMLYRFDEDG  177 (750)
T ss_pred             CCCCCCCHHHHHHHHH-------HHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf             6543222488999999-------99863864999999999999986087548999605788


No 483
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129   Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK  resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=36.97  E-value=30  Score=15.04  Aligned_cols=101  Identities=26%  Similarity=0.435  Sum_probs=55.8

Q ss_pred             ECCCC---HHHCCHHHHHHHHHCCCEE----ECCC-H-HHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf             45853---1310976668898459216----2689-8-999872189988776642244332433345579998732003
Q gi|254780268|r   79 HPGYG---FLSENAKFAEILEDHHIKF----IGPS-S-EHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEI  149 (443)
Q Consensus        79 hPGyG---fLsEn~~fa~~~e~~Gi~f----IGPs-~-~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~i  149 (443)
                      .||-|   |+|   .|...+.+.|++.    |=|+ | .-=.++|||.++.+++.+-.+=+-|+                
T Consensus        46 ~PGaGKSTl~~---~l~~~lrRrG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~dPg----------------  106 (333)
T TIGR00750        46 VPGAGKSTLVE---KLIMELRRRGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTDPG----------------  106 (333)
T ss_pred             CCCCCHHHHHH---HHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC----------------
T ss_conf             88885777999---99899976597689998879759755145456887754422223322898----------------


Q ss_pred             CCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEE
Q ss_conf             301220002345782168887506689999987543212589981688443420110331577
Q gi|254780268|r  150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIF  212 (443)
Q Consensus       150 GyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl  212 (443)
                         ++++|...-|..|- +-....|+-..++        +||=+.||||--=-|  =.||+|+
T Consensus       107 ---~FIRs~ptrG~lGG-ls~at~~~~~lld--------A~G~DVI~vETVGVG--QSEVdi~  155 (333)
T TIGR00750       107 ---VFIRSMPTRGSLGG-LSKATRELVKLLD--------AAGYDVILVETVGVG--QSEVDII  155 (333)
T ss_pred             ---CEECCCCCCCCHHH-HHHHHHHHHHHHH--------HCCCCEEEEEEECCC--HHHHHHH
T ss_conf             ---56767766675257-8799999999998--------638987999841575--2487887


No 484
>PRK08199 acetolactate synthase 2 catalytic subunit; Validated
Probab=36.72  E-value=30  Score=15.02  Aligned_cols=130  Identities=18%  Similarity=0.161  Sum_probs=0.0

Q ss_pred             HHHHHHHHHCCCCEEE--CCCCHHHCCHHHHHHH-HHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf             9999999870998994--5853131097666889-845921626898999872189988776642244332433345579
Q gi|254780268|r   64 QQIVAACEVTGADAIH--PGYGFLSENAKFAEIL-EDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPH  140 (443)
Q Consensus        64 ~~ii~~a~~~~~daih--PGyGfLsEn~~fa~~~-e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~  140 (443)
                      +.|++.-++.|++-|+  ||    +.+..|..++ +..+++||...-|......==--+|..=+-.-+-+..|-...+.-
T Consensus         6 ~~l~~~L~~~Gv~~vFg~pG----~~~~~l~dal~~~~~i~~v~~~hE~~A~~aAdgyar~tg~pgv~~~t~GpG~~N~~   81 (553)
T PRK08199          6 QILVDALRANGVERVFCVPG----ESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNAS   81 (553)
T ss_pred             HHHHHHHHHCCCCEEEEECC----CCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHH
T ss_conf             99999999879998999689----87799999997359974991287899999999999986998899985474599999


Q ss_pred             HHHHHHHCCCCHHH--------------------HHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             99873200330122--------------------00023457821688875066899999875432125899816884
Q gi|254780268|r  141 TAMPIAKEIGFPVL--------------------VKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       141 ea~~~a~~iGyPvi--------------------iKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      ....-|..=+-|++                    ....+.--.|-...+.+++++.+.+++|.+.+... .-++|+++
T Consensus        82 ~~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~~-~~GPV~l~  158 (553)
T PRK08199         82 IGVHTAFQDSTPMILFVGQVAREFREREAFQEIDYRRMFGPMAKWVAEIDDAARIPELVARAFHVATSG-RPGPVVLA  158 (553)
T ss_pred             HHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCCHHHHCCCCEECEEECCCHHHHHHHHHHHHHHHHCC-CCCCEEEE
T ss_conf             999999972998899958898454688876311244220230103047899999899999999997428-99738999


No 485
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=36.49  E-value=31  Score=14.99  Aligned_cols=33  Identities=21%  Similarity=0.388  Sum_probs=0.0

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf             068664470999999998888096599985855
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAVHSTA   35 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v~s~~   35 (443)
                      +||+|.+-|.+|+.+...++++|.++..++..+
T Consensus       137 ~~v~VvGgG~~g~e~A~~l~~~g~~Vtli~~~~  169 (277)
T pfam07992       137 KRVVVVGGGYIGLELAAALAKLGAEVTVVERRD  169 (277)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf             669997998759999999997299379998657


No 486
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=36.47  E-value=31  Score=14.99  Aligned_cols=107  Identities=18%  Similarity=0.295  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCC-HHHHHHHHCHHHHHHHHHHCCCCCCCCCCC-----
Q ss_conf             89999999870998994585313109766688984592162689-899987218998877664224433243334-----
Q gi|254780268|r   63 IQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPS-SEHIKIMGDKITAKKTAQQLGIPVVPGSGE-----  136 (443)
Q Consensus        63 i~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIGPs-~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~-----  136 (443)
                      .+.+.+++.+.+.+.++-|        .|-++-...--.|=||. .+.++.+      +++-++.|+|++--...     
T Consensus        36 A~~l~~~~~~~~~~~ifK~--------sfdkaNRTS~~sfqG~G~eegL~~L------~~ik~~~gl~viTeVh~~~q~~  101 (281)
T PRK12457         36 CGEYVEVTRKLGIPFVFKA--------SFDKANRSSIHSYRGVGLDEGLRIF------EEVKARFGVPVITDVHEVEQAA  101 (281)
T ss_pred             HHHHHHHHHHCCCCEEECC--------CCCCCCCCCCCCCCCCCHHHHHHHH------HHHHHHHCCCEEEEECCHHHHH
T ss_conf             9999999997299878437--------7887768999777898889999999------9999987996799858888999


Q ss_pred             ---------------CCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             ---------------5579998732003301220002345782168887506689999987543212589981688
Q gi|254780268|r  137 ---------------VYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYI  197 (443)
Q Consensus       137 ---------------~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlv  197 (443)
                                     ....+++..+.+.|-||.+|--...+         ++|+..+.+...     +.|+.+|++
T Consensus       102 ~v~e~vDilQIpAr~~rqtdLL~a~~~t~kpV~lKkGq~~s---------~~e~~~aaeki~-----s~Gn~~vil  163 (281)
T PRK12457        102 PVAEVADVLQVPAFLARQTDLVVAIAKTGKPVNIKKPQFMS---------PTQMKHVVSKCR-----EAGNDRVIL  163 (281)
T ss_pred             HHHHHHHHEEECHHHCCCCHHHHHHHHCCCEEEECCCCCCC---------HHHHHHHHHHHH-----HCCCCEEEE
T ss_conf             99865021234437502818999999739927955877699---------999999999999-----759984999


No 487
>PRK13127 consensus
Probab=36.45  E-value=31  Score=14.99  Aligned_cols=81  Identities=15%  Similarity=0.226  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHCCCCEE----ECCCCHHHCCHHHHHHHHHCCCEEEC-----CCHHHHHHHHC------------------
Q ss_conf             8999999987099899----45853131097666889845921626-----89899987218------------------
Q gi|254780268|r   63 IQQIVAACEVTGADAI----HPGYGFLSENAKFAEILEDHHIKFIG-----PSSEHIKIMGD------------------  115 (443)
Q Consensus        63 i~~ii~~a~~~~~dai----hPGyGfLsEn~~fa~~~e~~Gi~fIG-----Ps~~ai~~~gD------------------  115 (443)
                      ++..++-|++.|+|++    .|    .-|+.+|.+.|.++|+.+|=     .+.+-|+....                  
T Consensus       104 ~e~F~~~~~~~GvdGlIipDLP----~eE~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~  179 (262)
T PRK13127        104 VEKFVKKAAEAGVSGLIIPDLP----VEEATDLREACKKHGLDLVFLVAPTTPEERLKRIDEASSGFVYLVSRLGVTGAR  179 (262)
T ss_pred             HHHHHHHHHHCCCCEEEECCCC----HHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf             9999999987599769966999----789999999998558327998589998999999984389818998435556876


Q ss_pred             -------HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             -------99887766422443324333455799987320
Q gi|254780268|r  116 -------KITAKKTAQQLGIPVVPGSGEVYPHTAMPIAK  147 (443)
Q Consensus       116 -------K~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~  147 (443)
                             +...+++-+...+|++-|.+..+++++..+.+
T Consensus       180 ~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~  218 (262)
T PRK13127        180 EDVEEATFDLLKRARTTCKNKIAVGFGISKGEHAEELLD  218 (262)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHH
T ss_conf             555288999999999617998489933488999999986


No 488
>PRK13115 consensus
Probab=36.41  E-value=31  Score=14.98  Aligned_cols=85  Identities=16%  Similarity=0.159  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHHHCCCEEEC-----CCHHHHHHHHC----------------------
Q ss_conf             899999998709989945853131097666889845921626-----89899987218----------------------
Q gi|254780268|r   63 IQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIG-----PSSEHIKIMGD----------------------  115 (443)
Q Consensus        63 i~~ii~~a~~~~~daihPGyGfLsEn~~fa~~~e~~Gi~fIG-----Ps~~ai~~~gD----------------------  115 (443)
                      ++.-++-|++.|+|++.--==.+-|..+|.+.|.++|+.+|-     ++.+-|+..-.                      
T Consensus       116 ~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gi~~I~LvaPtt~~eRi~~i~~~a~GFIY~Vs~~GvTG~~~~~~  195 (269)
T PRK13115        116 VDRFARDLAAAGGAGLITPDLIPDEAGEWLAASERHGLDRIFLVAPSSTPERLAETVEASRGFVYAASTMGVTGARDAVS  195 (269)
T ss_pred             HHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
T ss_conf             99999999973998076478997899999999986581289985899988999999844888089975454567764441


Q ss_pred             ---HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             ---99887766422443324333455799987320
Q gi|254780268|r  116 ---KITAKKTAQQLGIPVVPGSGEVYPHTAMPIAK  147 (443)
Q Consensus       116 ---K~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~  147 (443)
                         +...+++=+...+|++-|.+..+++++..+.+
T Consensus       196 ~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~~~~~~~  230 (269)
T PRK13115        196 SAAPELVARVRAASDIPVCVGLGVSSAAQAAEIAG  230 (269)
T ss_pred             HHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHH
T ss_conf             77999999999717998179727899999999980


No 489
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.38  E-value=31  Score=14.98  Aligned_cols=87  Identities=18%  Similarity=0.182  Sum_probs=0.0

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEE--
Q ss_conf             06866447099999999888809-659998585577187767585799918998530006989999999870998994--
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELG-IPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH--   79 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elG-i~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daih--   79 (443)
                      |||||.+=|.-..-+.|.+++.| -.++.++.+.+.......+.+....+.+....            .+-.++|.|.  
T Consensus         9 kkv~V~GlG~sG~aaa~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~l~~~d~vv~S   76 (468)
T PRK04690          9 KRVALWGWGREGRAAYRALRAQLPAQPLTVFCNAEEVREVGALADAALLVETEASA------------QRLAAFEVVVKS   76 (468)
T ss_pred             CEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCCEEECCCCH------------HHHHCCCEEEEC
T ss_conf             97999834787999999999669904999728832464667620457567467785------------576148899989


Q ss_pred             CCCCHHHCCHHHHHHHHHCCCEEEC
Q ss_conf             5853131097666889845921626
Q gi|254780268|r   80 PGYGFLSENAKFAEILEDHHIKFIG  104 (443)
Q Consensus        80 PGyGfLsEn~~fa~~~e~~Gi~fIG  104 (443)
                      ||.   +-+..+.+...+.|+.++|
T Consensus        77 PGi---~~~~p~~~~a~~~~i~i~~   98 (468)
T PRK04690         77 PGI---SPYRPEALAAAAQGTPFIG   98 (468)
T ss_pred             CCC---CCCCHHHHHHHHCCCCEEE
T ss_conf             957---9868999999987994886


No 490
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=36.35  E-value=31  Score=14.98  Aligned_cols=33  Identities=15%  Similarity=0.325  Sum_probs=0.0

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf             068664470999999998888096599985855
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAVHSTA   35 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v~s~~   35 (443)
                      ||++|.+-|-|++.....+..+|.++..+...+
T Consensus       176 k~v~ViGgG~ig~E~A~~~~~lG~~Vtii~~~~  208 (464)
T PRK05976        176 KSLVVVGGGYIGLEWGSMLRKFGVEVTVVEAAD  208 (464)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf             559998996899999999995398699998536


No 491
>PRK13116 consensus
Probab=36.30  E-value=31  Score=14.97  Aligned_cols=87  Identities=21%  Similarity=0.252  Sum_probs=0.0

Q ss_pred             HHCC------HHHHHHHHHHCCCCEE----ECCCCHHHCCHHHHHHHHHCCCEEEC-----CCHHHHHHHHC--------
Q ss_conf             0069------8999999987099899----45853131097666889845921626-----89899987218--------
Q gi|254780268|r   59 SYLN------IQQIVAACEVTGADAI----HPGYGFLSENAKFAEILEDHHIKFIG-----PSSEHIKIMGD--------  115 (443)
Q Consensus        59 sYld------i~~ii~~a~~~~~dai----hPGyGfLsEn~~fa~~~e~~Gi~fIG-----Ps~~ai~~~gD--------  115 (443)
                      +|+|      ++..++-|++.|+|++    .|    +-|..+|...|.++|+.+|=     ++.+-+...-.        
T Consensus       101 ~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP----~eE~~~~~~~~~~~~i~~I~l~~ptt~~~ri~~I~~~s~GFiY~  176 (278)
T PRK13116        101 IYGNVPFTRGLDRFYQEFAEAGADSILLPDVP----VREGAPFSAAAAAAGIDPIYIAPANASEKTLEGVSAASKGYIYA  176 (278)
T ss_pred             ECCCHHHHCCHHHHHHHHHHCCCCEEEECCCC----HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEE
T ss_conf             05728877279999999977697589946999----78889999999865766699937999599999999718973999


Q ss_pred             ------------------HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf             ------------------9988776642244332433345579998732003
Q gi|254780268|r  116 ------------------KITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEI  149 (443)
Q Consensus       116 ------------------K~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~i  149 (443)
                                        +..-+++=+...+|++-|.+..+++++.+.....
T Consensus       177 VS~~GvTG~~~~~~~~~l~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~~~~~  228 (278)
T PRK13116        177 ISRDGVTGTERESSTDGLSAVVDNIKKFDGAPILLGFGISSPQHVADAIAAG  228 (278)
T ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf             8635222688666678999999999845799879981679899999998668


No 492
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes.  FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=36.22  E-value=31  Score=14.96  Aligned_cols=98  Identities=21%  Similarity=0.313  Sum_probs=0.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHCC--------CEEEEECCC-HHHCCCCHHHCCEEEECCCCCCCC-------------HHC
Q ss_conf             6866447099999999888809--------659998585-577187767585799918998530-------------006
Q gi|254780268|r    4 KILIANRGEIALRILRACKELG--------IPTVAVHST-ADSGAMHVRLADESVCIGPPSSKD-------------SYL   61 (443)
Q Consensus         4 ~iLianrGeia~riira~~elG--------i~tv~v~s~-~D~~a~~~~~ADe~~~i~~~~~~~-------------sYl   61 (443)
                      ||++.+=|.-..||+....+.+        .+++++||+ .|-.....--++.-+.||......             ..-
T Consensus         2 ri~vIGvGgAG~nivd~l~~~~~~~~~~~~~~~iAvNTd~~dL~~l~~~~a~~ki~iG~~~t~G~GaG~~pe~G~~aaee   81 (349)
T cd02202           2 RVLIIGVGQAGGRIVDALNRHDKRSGFGYCVGALAINTAKNDLKGLKHIPAEDRILIGQSEVKGHGVGADRELGAEVAEE   81 (349)
T ss_pred             EEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             59999845602899999998376567665178999988899997554788110798266666788899985999999996


Q ss_pred             CHHHHHHHHHH---CCCCEEEC--------CCCHHHCCHHHHHHHHHC-CCEEEC
Q ss_conf             98999999987---09989945--------853131097666889845-921626
Q gi|254780268|r   62 NIQQIVAACEV---TGADAIHP--------GYGFLSENAKFAEILEDH-HIKFIG  104 (443)
Q Consensus        62 di~~ii~~a~~---~~~daihP--------GyGfLsEn~~fa~~~e~~-Gi~fIG  104 (443)
                      |.+.|.+....   +.+|+++-        |.|..   +-+|+.+.+. +++.+|
T Consensus        82 ~~~~I~~~l~~~~~~d~d~vfi~aG~GGGTGtgaa---pvia~~~~~~~~~~v~~  133 (349)
T cd02202          82 DLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGA---PVLAKELKERYEEPVYA  133 (349)
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCH---HHHHHHHHHHCCCCEEE
T ss_conf             49999999842476664579999446898777633---99999999825997799


No 493
>PRK06116 glutathione reductase; Validated
Probab=36.18  E-value=31  Score=14.96  Aligned_cols=33  Identities=18%  Similarity=0.219  Sum_probs=0.0

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf             068664470999999998888096599985855
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAVHSTA   35 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v~s~~   35 (443)
                      ++++|.+-|-|++.....+.++|.++..+...+
T Consensus       168 ~~v~IiGgG~ig~E~A~~~~~lG~~Vtlv~~~~  200 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLHGLGSETHLFVRGD  200 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCEEEEEEECC
T ss_conf             779999996669999999996098489999448


No 494
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=35.94  E-value=31  Score=14.93  Aligned_cols=43  Identities=28%  Similarity=0.353  Sum_probs=0.0

Q ss_pred             CHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             012200023457821688875066899999875432125899816884
Q gi|254780268|r  151 FPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       151 yPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      |.-+.|+-..++|.=-..|++++||.++++.|+..+     +++++||
T Consensus       128 f~~~A~a~G~~~g~~g~rV~~~~el~~al~~Al~~~-----~~P~lie  170 (183)
T cd02005         128 YTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNR-----DKLSLIE  170 (183)
T ss_pred             HHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCC-----CCEEEEE
T ss_conf             999999947866842899789999999999999728-----9829999


No 495
>pfam02775 TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
Probab=35.92  E-value=31  Score=14.93  Aligned_cols=44  Identities=23%  Similarity=0.376  Sum_probs=0.0

Q ss_pred             CCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             033012200023457821688875066899999875432125899816884
Q gi|254780268|r  148 EIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE  198 (443)
Q Consensus       148 ~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvE  198 (443)
                      ....|=+.+=+.+-|..|.++ .+.+||.+++++|...      +++.+||
T Consensus       106 ~~~~~d~~~lA~a~G~~~~~v-~~~~el~~al~~a~~~------~gP~~ie  149 (150)
T pfam02775       106 DLPPVDFAKLAEAYGAKGARV-ESPEELEEALKEALAH------DGPALID  149 (150)
T ss_pred             CCCCCCHHHHHHHCCCEEEEE-CCHHHHHHHHHHHHHC------CCCEEEE
T ss_conf             888878999999859869997-8999999999999828------9998995


No 496
>PRK05942 aspartate aminotransferase; Provisional
Probab=35.91  E-value=31  Score=14.93  Aligned_cols=71  Identities=23%  Similarity=0.299  Sum_probs=0.0

Q ss_pred             HHHHHHHCCCEEECCC------HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCC
Q ss_conf             6688984592162689------8999872189988776642244332433345579998732003301220002345782
Q gi|254780268|r   91 FAEILEDHHIKFIGPS------SEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGR  164 (443)
Q Consensus        91 fa~~~e~~Gi~fIGPs------~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~~iGyPviiKp~~gGGG~  164 (443)
                      +.+.+.+.|+.+.-|.      .+.-..+.+...+++++++.||-++||+                       .+|-+|.
T Consensus       309 l~~~L~~~g~~~~~p~g~~y~w~~~~~~~~~~~f~~~ll~~~gV~v~PG~-----------------------~Fg~~g~  365 (394)
T PRK05942        309 LIQGLGELGWDIPPTKATMYLWVPCPVGMGSTDFALNVLQKTGVVVTPGN-----------------------AFGEGGE  365 (394)
T ss_pred             HHHHHHHCCCEECCCCEEEEEEEECCCCCCHHHHHHHHHHHCCEEEECCH-----------------------HHCCCCC
T ss_conf             99989876967537885889988689997989999999984999998873-----------------------1178999


Q ss_pred             E---EEEEEECHHHHHHHHHHHH
Q ss_conf             1---6888750668999998754
Q gi|254780268|r  165 G---MRIAYSENDLSEAIDQARS  184 (443)
Q Consensus       165 G---i~vv~~~~el~~a~~~a~~  184 (443)
                      |   +..+.+.++|.+++++..+
T Consensus       366 ~~iRlsf~~~~~~l~ea~~Rl~~  388 (394)
T PRK05942        366 GYVRISLIADCDRLGEALHRIKQ  388 (394)
T ss_pred             CEEEEEEECCHHHHHHHHHHHHH
T ss_conf             87999971889999999999999


No 497
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=35.66  E-value=31  Score=14.90  Aligned_cols=110  Identities=16%  Similarity=0.180  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHC-----CCCEEECCCCHHHCCHHHHHHHHHCC----CEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCC
Q ss_conf             989999999870-----99899458531310976668898459----216268989998721899887766422443324
Q gi|254780268|r   62 NIQQIVAACEVT-----GADAIHPGYGFLSENAKFAEILEDHH----IKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVP  132 (443)
Q Consensus        62 di~~ii~~a~~~-----~~daihPGyGfLsEn~~fa~~~e~~G----i~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p  132 (443)
                      +++.++++...-     ++..+.-|-|  .+-..+.+..++.|    +.|+|.-        +......++..+.|=+.|
T Consensus       207 G~d~Li~A~~~l~~~~p~~~lvIvGdG--p~~~~L~~l~~~~~l~~~V~flG~v--------~~~~l~~~~~~aDvfv~P  276 (398)
T cd03796         207 GIDLLVGIIPEICKKHPNVRFIIGGDG--PKRILLEEMREKYNLQDRVELLGAV--------PHERVRDVLVQGHIFLNT  276 (398)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHHHHHHCCCCEEEECCCC--------CHHHHHHHHHHHHEEECC
T ss_conf             099999999999965899599993787--1189999999872336728975888--------567778888774421276


Q ss_pred             CCCCCCHHHHHHHHHCCCCHHHHHCCCCCC-------CCEEEEEEECHHHHHHHHHHHH
Q ss_conf             333455799987320033012200023457-------8216888750668999998754
Q gi|254780268|r  133 GSGEVYPHTAMPIAKEIGFPVLVKASAGGG-------GRGMRIAYSENDLSEAIDQARS  184 (443)
Q Consensus       133 ~~~~~~~~ea~~~a~~iGyPviiKp~~gGG-------G~Gi~vv~~~~el~~a~~~a~~  184 (443)
                      +....-.--++++. ..|-||+  +++.||       |.+.-...++++|.+++..+..
T Consensus       277 S~~Egfglv~lEAm-A~G~PVV--at~vgG~~Evv~~~~~~~~~~d~~~la~~l~~ll~  332 (398)
T cd03796         277 SLTEAFCIAIVEAA-SCGLLVV--STRVGGIPEVLPPDMILLAEPDVESIVRKLEEAIS  332 (398)
T ss_pred             CCCCCCCHHHHHHH-HCCCCEE--ECCCCCCCCEEECCCEEECCCCHHHHHHHHHHHHC
T ss_conf             54246667999999-8399899--88899861134189368748999999999999976


No 498
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=35.64  E-value=31  Score=14.90  Aligned_cols=29  Identities=14%  Similarity=0.250  Sum_probs=0.0

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             06866447099999999888809659998
Q gi|254780268|r    3 SKILIANRGEIALRILRACKELGIPTVAV   31 (443)
Q Consensus         3 ~~iLianrGeia~riira~~elGi~tv~v   31 (443)
                      +++|+.+-||++--+++.+.+.|+..|.+
T Consensus       175 ~~vLvIGaGem~~l~~k~L~~~g~~~i~v  203 (338)
T PRK00676        175 ASLLFIGYSEINRKVAYYLQRQGYSRITF  203 (338)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             86999866299999999998769997999


No 499
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=35.56  E-value=31  Score=14.89  Aligned_cols=77  Identities=10%  Similarity=0.139  Sum_probs=0.0

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCC--------HHHCCCCHHHCCEEEE-CCCCCCCCHHCCHHHHHHHHH
Q ss_conf             9706866447099999999888809659998585--------5771877675857999-189985300069899999998
Q gi|254780268|r    1 MISKILIANRGEIALRILRACKELGIPTVAVHST--------ADSGAMHVRLADESVC-IGPPSSKDSYLNIQQIVAACE   71 (443)
Q Consensus         1 m~~~iLianrGeia~riira~~elGi~tv~v~s~--------~D~~a~~~~~ADe~~~-i~~~~~~~sYldi~~ii~~a~   71 (443)
                      .+.+-..=++|.+. ++-..++++|++.+.|.++        -|..-.....+.-.+. .++..+.-++-++++.++.++
T Consensus         5 ~~~~~~~FG~g~l~-~l~~~~~~~G~k~~lvvtd~~~~k~g~~~~v~~~L~~~~i~~~vf~~v~pnP~~~~V~~~~~~~r   83 (381)
T PRK10624          5 ILNETAYFGRGAVG-ALTDEVKRRGYHKALIVTDKTLVQCGVVAKVTDKLDAAGLAYEIYDGVKPNPTISVVKEGLEVFQ   83 (381)
T ss_pred             ECCCCEEECCCHHH-HHHHHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             37987589976999-99999997499879999696545563699999999876983999889258989999999999998


Q ss_pred             HCCCCEE
Q ss_conf             7099899
Q gi|254780268|r   72 VTGADAI   78 (443)
Q Consensus        72 ~~~~dai   78 (443)
                      +.++|.|
T Consensus        84 ~~~~D~I   90 (381)
T PRK10624         84 ASGADYL   90 (381)
T ss_pred             HCCCCEE
T ss_conf             6499989


No 500
>TIGR02022 hutF formiminoglutamate deiminase; InterPro: IPR010252   In some species, histidine utilisation goes via urocanate to glutamate in four step, the last being removal of formamide. This entry describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (IPR010247 from INTERPRO) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by ) would yield glutamate..
Probab=35.55  E-value=25  Score=15.60  Aligned_cols=19  Identities=42%  Similarity=0.552  Sum_probs=0.0

Q ss_pred             ECCCHHHHHHHHHHHHCCC
Q ss_conf             4470999999998888096
Q gi|254780268|r    8 ANRGEIALRILRACKELGI   26 (443)
Q Consensus         8 anrGeia~riira~~elGi   26 (443)
                      ||.+|.+-||++||++-||
T Consensus       136 Ad~~em~~ri~~AA~~~Gi  154 (466)
T TIGR02022       136 ADPAEMAERIAAAAADAGI  154 (466)
T ss_pred             CCHHHHHHHHHHHHHHHCC
T ss_conf             7778999999999986077


Done!