HHsearch alignment for GI: 254780268 and conserved domain: pfam07478
>pfam07478 Dala_Dala_lig_C D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=99.95 E-value=1.5e-27 Score=216.02 Aligned_cols=162 Identities=27% Similarity=0.373 Sum_probs=131.2
Q ss_pred HHHHCCCCCCCCCCCCCH----HHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 664224433243334557----9998732003301220002345782168887506689999987543212589981688
Q gi|254780268|r 122 TAQQLGIPVVPGSGEVYP----HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYI 197 (443)
Q Consensus 122 ~a~~~GVP~~p~~~~~~~----~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlv 197 (443)
T Consensus 1 ll~~~Giptp~~~~v~~~~~~~~~~~~i~~~lg~P~vvKP~~~gss~Gv~~v~~~~el~~~i~~~~~~------~~~vlV 74 (201)
T pfam07478 1 LLKAAGIPVAPFIVLTREDWVLATIEKVEEKLGYPVFVKPANLGSSVGISKVTSREELQSAIEEAFQY------DNKVLI 74 (201)
T ss_pred CHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHC------CCCEEE
T ss_conf 95565999999089825323435799999865998899989999866879995846879999998745------980799
Q ss_pred EEEEEEEEECCEEEEEECCCCCCCCCCCCC--CCCCCCCEEEE-----ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 443420110331577734787023656654--21135622554-----03445588999999999999988651543410
Q gi|254780268|r 198 EKYLENPRHIEVQIFGDGMGNAIHFGERDC--SVQRRNQKIWE-----EAHSPVISAQDRTEIGETCVKAMKKIDYRGAG 270 (443)
Q Consensus 198 Ek~i~~~rhiEvqVl~D~~g~~v~l~erdC--SiQrr~qkiiE-----eaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~ 270 (443)
T Consensus 75 Eefi~G-~E~~v~vl~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~Pa-~l~~~~~~~i~~~A~~~~~aLg~~g~~ 152 (201)
T pfam07478 75 EEAIEG-REIECAVLGNEDLEVSPVGEIRLSGGFYDYEAKYILSSAQIIVPA-DLPEEVEEQIQELALKAYKALGCRGLA 152 (201)
T ss_pred EECCCC-CEEEEEEEECCCEEEEEEEEEECCCCEEEHHHEECCCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 985669-679999970898089875899437750267680136872376156-685999999999999999984887605
Q ss_pred EEEEEEC-CCCEEEEECCCCCC
Q ss_conf 2458972-88349982276543
Q gi|254780268|r 271 TIEFLYE-NGQFYFIEMNTRLQ 291 (443)
Q Consensus 271 tvEFl~~-~~~~yflEvN~Rlq 291 (443)
T Consensus 153 rvD~~~d~~g~~~vlEvN~~Pg 174 (201)
T pfam07478 153 RIDFFLTEDGEIYLNEVNTMPG 174 (201)
T ss_pred EEEEEECCCCCEEEEEECCCCC
T ss_conf 7999996899499999549799