PSIBLAST alignment of GI: 254780268 and protein with PDB id: 1jdb

gi|3318817|pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073
>gi|3318821|pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073
>gi|3318825|pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073
>gi|3318829|pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073
>gi|4929935|pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp Length = 1073
 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/424 (17%), Positives = 149/424 (35%), Gaps = 48/424 (11%)

Query: 2   ISKILIANRGEI----ALR-------ILRACKELGIPTVAVHSTADSGAMHVRLADESVC 50
           I  ILI   G I    A           +A +E G   + V+S   +      +AD +  
Sbjct: 7   IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMAD-ATY 65

Query: 51  IGPPSSKDSYLNIQQIVAACEVTGADAIHP---GYGFLSENAKF--AEILEDHHIKFIGP 105
           I P          + +    E    DA+ P   G   L+   +     +LE+  +  IG 
Sbjct: 66  IEPIHW-------EVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGA 118

Query: 106 SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRG 165
           +++ I    D+       +++G+             A+ +A ++GFP +++ S   GG G
Sbjct: 119 TADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSG 178

Query: 166 MRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFG-- 223
             IAY+  +  E   +             + I++ L   +  E+++  D   N I     
Sbjct: 179 GGIAYNREEFEEICARGLDL----SPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSI 234

Query: 224 ERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYR-GAGTIEFL--YENGQ 280
           E   ++          A +  ++ ++   +    +  +++I    G   ++F    +NG+
Sbjct: 235 ENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGR 294

Query: 281 FYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAED 340
              IEMN R+     +    TG  +      +A    L     DIT          + + 
Sbjct: 295 LIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDY 354

Query: 341 PENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLN 400
               IP      +     G   R+ +               + +++  G+ ++E + +  
Sbjct: 355 VVTKIPRFNFEKF----AGANDRLTTQMKS-----------VGEVMAIGRTQQESLQKAL 399

Query: 401 RALN 404
           R L 
Sbjct: 400 RGLE 403