PSIBLAST alignment of GI: 254780268 and protein with PDB id: 1jdb
gi|3318817|pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073
>gi|3318821|pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073
>gi|3318825|pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073
>gi|3318829|pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073
>gi|4929935|pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp Length = 1073
Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats.
Identities = 75/424 (17%), Positives = 149/424 (35%), Gaps = 48/424 (11%)
Query: 2 ISKILIANRGEI----ALR-------ILRACKELGIPTVAVHSTADSGAMHVRLADESVC 50
I ILI G I A +A +E G + V+S + +AD +
Sbjct: 7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMAD-ATY 65
Query: 51 IGPPSSKDSYLNIQQIVAACEVTGADAIHP---GYGFLSENAKF--AEILEDHHIKFIGP 105
I P + + E DA+ P G L+ + +LE+ + IG
Sbjct: 66 IEPIHW-------EVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGA 118
Query: 106 SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRG 165
+++ I D+ +++G+ A+ +A ++GFP +++ S GG G
Sbjct: 119 TADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSG 178
Query: 166 MRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFG-- 223
IAY+ + E + + I++ L + E+++ D N I
Sbjct: 179 GGIAYNREEFEEICARGLDL----SPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSI 234
Query: 224 ERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYR-GAGTIEFL--YENGQ 280
E ++ A + ++ ++ + + +++I G ++F +NG+
Sbjct: 235 ENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGR 294
Query: 281 FYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAED 340
IEMN R+ + TG + +A L DIT + +
Sbjct: 295 LIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDY 354
Query: 341 PENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLN 400
IP + G R+ + + +++ G+ ++E + +
Sbjct: 355 VVTKIPRFNFEKF----AGANDRLTTQMKS-----------VGEVMAIGRTQQESLQKAL 399
Query: 401 RALN 404
R L
Sbjct: 400 RGLE 403