RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin
carboxylase subunit [Candidatus Liberibacter asiaticus str. psy62]
(443 letters)
>gnl|CDD|30788 COG0439, AccC, Biotin carboxylase [Lipid metabolism].
Length = 449
Score = 599 bits (1546), Expect = e-172
Identities = 278/444 (62%), Positives = 347/444 (78%), Gaps = 4/444 (0%)
Query: 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60
M KILIANRGEIA+RI+RAC+ELGI TVAV+S AD+ A+HV LADE+VCIGP S DSY
Sbjct: 1 MFKKILIANRGEIAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSY 60
Query: 61 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120
LNI I+AA E TGADAIHPGYGFLSENA FAE + + FIGPS+E I+ MGDKITA+
Sbjct: 61 LNIDAIIAAAEETGADAIHPGYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITAR 120
Query: 121 KTAQQLGIPVVPGSGEVYPHT--AMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEA 178
+ + G+PVVPGS A+ IA+EIG+PV+VKA+AGGGGRGMR+ +E +L A
Sbjct: 121 RLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAA 180
Query: 179 IDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238
+ AR EA AAFGN VY+EK++E PRHIEVQ+ GDG GN IH GERDCS+QRR+QK+ E
Sbjct: 181 FEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVIE 240
Query: 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVT 297
EA SP+++ + R +IGE V+A K I YRGAGT+EFLY+ NG+FYFIEMNTRLQVEHPVT
Sbjct: 241 EAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIEMNTRLQVEHPVT 300
Query: 298 EAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPE-NFIPNPGEITYFHA 356
E +TGIDLV EQI +A+ LS++Q+DI F GHAIECRINAEDP NF+P+PG+IT +
Sbjct: 301 EMVTGIDLVKEQIRIAAGEPLSLKQEDIKFRGHAIECRINAEDPLGNFLPSPGKITRYAP 360
Query: 357 PGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIP 416
PGG G+R+DS Y GY VP YYDS+I K+IVHG+ R E + R+ RAL+E++IDGIKT IP
Sbjct: 361 PGGPGVRVDSGVYDGYRVPPYYDSMIGKVIVHGRTRDEAIARMRRALDELVIDGIKTNIP 420
Query: 417 LFQKLIKNEDIIEGNYDIHWLENK 440
L Q+++++ D + G+ D H+LE
Sbjct: 421 LLQEILRDPDFLAGDLDTHFLETH 444
>gnl|CDD|34383 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit
[Lipid metabolism].
Length = 645
Score = 591 bits (1525), Expect = e-169
Identities = 239/437 (54%), Positives = 313/437 (71%), Gaps = 4/437 (0%)
Query: 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60
M SKILIANRGEIA R++R ++LGI TVAV+S AD+ A+HVR+ADE+V IGP + +SY
Sbjct: 1 MFSKILIANRGEIACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESY 60
Query: 61 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120
L+I +I+ A TGA AIHPGYGFLSENA FA+ +ED + FIGPS+ I+ MGDKI AK
Sbjct: 61 LDIDKIIDAARRTGAQAIHPGYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAK 120
Query: 121 KTAQQLGIPVVPGS-GEVY-PHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEA 178
K A + G+P VPG G + + IA+EIG+PVL+KASAGGGG+GMR+ + + +EA
Sbjct: 121 KLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKASAGGGGKGMRVVETPEEFAEA 180
Query: 179 IDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238
++ AR EA A+FG+D V+IEKYL+ PRHIE+Q+F D GN +H GERDCS+QRR+QK+ E
Sbjct: 181 LESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIE 240
Query: 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY-ENGQFYFIEMNTRLQVEHPVT 297
EA +P ++ + R +GE V A K + Y GAGT+EF+ +G FYF+EMNTRLQVEHPVT
Sbjct: 241 EAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQVEHPVT 300
Query: 298 EAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPE-NFIPNPGEITYFHA 356
E ITGIDLV QI VAS +L Q DI +GHAIE RI AEDP F+P+ G +T +
Sbjct: 301 ELITGIDLVEWQIRVASGEKLPFTQDDIPLNGHAIEARIYAEDPARGFLPSTGRLTRYRP 360
Query: 357 PGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIP 416
P G G+R+DS +G + +YD +IAKLIVHG +R+E + RL RAL E ++GI T IP
Sbjct: 361 PAGPGVRVDSGVREGDEISPFYDPMIAKLIVHGADREEALDRLRRALAEFEVEGIATNIP 420
Query: 417 LFQKLIKNEDIIEGNYD 433
+ L+ + G+ D
Sbjct: 421 FLRALMADPRFRGGDLD 437
>gnl|CDD|35459 KOG0238, KOG0238, KOG0238, 3-Methylcrotonyl-CoA carboxylase,
biotin-containing subunit/Propionyl-CoA carboxylase,
alpha chain/Acetyl-CoA carboxylase, biotin carboxylase
subunit [Lipid transport and metabolism, Amino acid
transport and metabolism].
Length = 670
Score = 541 bits (1395), Expect = e-154
Identities = 225/442 (50%), Positives = 309/442 (69%), Gaps = 5/442 (1%)
Query: 5 ILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQ 64
ILIANRGEIA R++R K++GI TVAV+S AD ++HV++ADE+VCIGP + SYL +
Sbjct: 1 ILIANRGEIACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMD 60
Query: 65 QIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQ 124
+I+ A + TGA AIHPGYGFLSENA+FAE+ ED I FIGP I+ MGDK T+K+ +
Sbjct: 61 KIIDAAKRTGAQAIHPGYGFLSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMK 120
Query: 125 QLGIPVVPG-SGEVYP-HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQA 182
G+P+VPG GE A +A+EIG+PV++KA+AGGGG+GMRIA+SE + E ++ A
Sbjct: 121 AAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESA 180
Query: 183 RSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHS 242
+ EA +FG+D + +EK+++NPRHIEVQ+FGD GNA+H GERDCSVQRRNQKI EEA +
Sbjct: 181 KQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSVQRRNQKIIEEAPA 240
Query: 243 PVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY-ENGQFYFIEMNTRLQVEHPVTEAIT 301
P + + R +GE V+A K + Y GAGT+EF+ FYF+EMNTRLQVEHPVTE IT
Sbjct: 241 PNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQVEHPVTEMIT 300
Query: 302 GIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGGL 360
G DLV QI VA+ L ++Q++I +GHA E RI AEDP + F+P+ G + Y+ PG
Sbjct: 301 GTDLVEWQIRVAAGEPLPLKQEEIPLNGHAFEARIYAEDPYKGFLPSAGRLVYYSFPGHS 360
Query: 361 -GIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLFQ 419
G+R+D+ G V +YD +IAKL+V GK+R+E + +L AL+ +I G+ T I +
Sbjct: 361 PGVRVDTGVRSGDEVSIHYDPMIAKLVVWGKDREEALNKLKDALDNYVIRGVPTNIDFLR 420
Query: 420 KLIKNEDIIEGNYDIHWLENKY 441
+I + + +GN ++
Sbjct: 421 DIISHPEFAKGNVSTKFIPEHQ 442
>gnl|CDD|31240 COG1038, PycA, Pyruvate carboxylase [Energy production and
conversion].
Length = 1149
Score = 500 bits (1290), Expect = e-142
Identities = 220/451 (48%), Positives = 302/451 (66%), Gaps = 12/451 (2%)
Query: 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSK-DS 59
I K+L+ANRGEIA+R+ RA ELGI TVA++S D ++H ADES IG ++
Sbjct: 6 KIKKVLVANRGEIAIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEA 65
Query: 60 YLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITA 119
YL+I +I+ + +GADAIHPGYGFLSEN +FA + I FIGP E + ++GDK+ A
Sbjct: 66 YLSIDEIIRIAKRSGADAIHPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKA 125
Query: 120 KKTAQQLGIPVVPGS-GEV-YPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSE 177
+ A + G+PV+PG+ G + A+ A+E G+PV++KA+AGGGGRGMR+ SE DL+E
Sbjct: 126 RNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAE 185
Query: 178 AIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIW 237
A ++A+SEA AAFGND VY+EK +ENP+HIEVQI GD GN +H ERDCSVQRR+QK+
Sbjct: 186 AFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKVV 245
Query: 238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYEN-GQFYFIEMNTRLQVEHPV 296
E A +P +S + R EI + VK + I Y AGT+EFL + G+FYFIE+N R+QVEH +
Sbjct: 246 EVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQVEHTI 305
Query: 297 TEAITGIDLVHEQIYVASENRLSV------QQKDITFSGHAIECRINAEDPEN-FIPNPG 349
TE ITGID+V QI++A+ L QQKDI G+AI+CRI EDPEN FIP+ G
Sbjct: 306 TEEITGIDIVKAQIHIAAGATLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGFIPDTG 365
Query: 350 EITYFHAPGGLGIRMDSA-SYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIII 408
IT + + GG G+R+D +Y G + YYDSL+ K+ G +E + ++ RAL E I
Sbjct: 366 RITAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTCWGSTFEEAIRKMIRALREFRI 425
Query: 409 DGIKTTIPLFQKLIKNEDIIEGNYDIHWLEN 439
G+KT IP + ++ + D G Y +++
Sbjct: 426 RGVKTNIPFLEAVLNHPDFRSGRYTTSFIDT 456
>gnl|CDD|35590 KOG0369, KOG0369, KOG0369, Pyruvate carboxylase [Energy production
and conversion].
Length = 1176
Score = 449 bits (1156), Expect = e-127
Identities = 211/448 (47%), Positives = 287/448 (64%), Gaps = 13/448 (2%)
Query: 3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIG---PPSSKDS 59
+K+L+ANRGEIA+R+ RA EL + TVA++S D +MH + ADE+ IG PP +
Sbjct: 34 NKVLVANRGEIAIRVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVG--A 91
Query: 60 YLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITA 119
YL I +I++ + DA+HPGYGFLSE + FA+ ++D I+FIGPS E I MGDK+ A
Sbjct: 92 YLAIDEIISIAKKHNVDAVHPGYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAA 151
Query: 120 KKTAQQLGIPVVPGS-GEV-YPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSE 177
+ A + G+PVVPG+ G + A+ KE G PV++KA+ GGGGRGMR+ S D+ E
Sbjct: 152 RAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGGGGRGMRVVRSGEDVEE 211
Query: 178 AIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIW 237
A +A SEALAAFGN +++EK+LE PRHIEVQ+ GD GN +H ERDCSVQRR+QK+
Sbjct: 212 AFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSVQRRHQKVV 271
Query: 238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYEN-GQFYFIEMNTRLQVEHPV 296
E A + + + R I VK K + Y AGT+EFL + G+ YFIE+N RLQVEH V
Sbjct: 272 EIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQVEHTV 331
Query: 297 TEAITGIDLVHEQIYVA---SENRLSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEIT 352
TE ITG+DLV QI+VA S L + Q IT G AI+CR+ EDP + F P+ G I
Sbjct: 332 TEEITGVDLVQAQIHVAEGASLPDLGLTQDKITTRGFAIQCRVTTEDPAKGFQPDTGRIE 391
Query: 353 YFHAPGGLGIRMDSAS-YQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGI 411
F + G+GIR+D AS + G + +YDSL+ K+I HG + ++ RAL E I G+
Sbjct: 392 VFRSGEGMGIRLDGASAFAGAVISPHYDSLLVKVICHGSTYEIAARKMIRALIEFRIRGV 451
Query: 412 KTTIPLFQKLIKNEDIIEGNYDIHWLEN 439
KT IP ++ N +EG D +++
Sbjct: 452 KTNIPFLLNVLTNPVFLEGTVDTTFIDE 479
>gnl|CDD|35589 KOG0368, KOG0368, KOG0368, Acetyl-CoA carboxylase [Lipid transport
and metabolism].
Length = 2196
Score = 271 bits (695), Expect = 2e-73
Identities = 150/500 (30%), Positives = 244/500 (48%), Gaps = 68/500 (13%)
Query: 2 ISKILIANRGEIALRILRACK---------ELGIPTVAVHSTAD--SGAMHVRLADESVC 50
I +ILIAN G A++ +R+ + E I V + + D + A ++R+AD+ V
Sbjct: 54 IKRILIANNGIAAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRMADQYVE 113
Query: 51 IGPPSSKDSYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHI 110
+ ++ ++Y N+ IV E T DA+ G+G SEN + E L + I FIGP + +
Sbjct: 114 VPGGTNNNNYANVDLIVDIAERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAM 173
Query: 111 KIMGDKITAKKTAQQLGIPVVPGSG-------------------EVY-------PHTAMP 144
+ +GDKI + AQ G+P +P SG ++Y +
Sbjct: 174 RALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLE 233
Query: 145 IAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENP 204
A++IGFPV++KAS GGGG+G+R +E+D Q ++E +++ K +
Sbjct: 234 AAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNE----VPGSPIFLMKLADQA 289
Query: 205 RHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKI 264
RH+EVQ+ D GN I RDCS+QRR+QKI EEA + + + ++ + V+ K +
Sbjct: 290 RHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAKLV 349
Query: 265 DYRGAGTIEFLY--ENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVA--------- 313
Y AGT+E+LY ++G++YF+E+N RLQVEHP TE I+ ++L Q+ +A
Sbjct: 350 GYVSAGTVEYLYSPDDGEYYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIP 409
Query: 314 -------------SENRLSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAPGG 359
S + GH I RI +EDP + F P+ G + +
Sbjct: 410 DIRRLYGLEPTGDSPIDFENAKLPCP-KGHCIAARITSEDPDDGFKPSSGTVQELNFRSS 468
Query: 360 LGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDG-IKTTIPLF 418
+ + G + + DS + G++R+E + + AL E+ I G +TT+
Sbjct: 469 SNVWGYFSVGNGGGIHEFADSQFGHIFAFGESRQEAIANMVVALKELSIRGDFRTTVEYL 528
Query: 419 QKLIKNEDIIEGNYDIHWLE 438
L++ ED D WL+
Sbjct: 529 IDLLETEDFESNKIDTGWLD 548
>gnl|CDD|145768 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, ATP
binding domain. Carbamoyl-phosphate synthase catalyses
the ATP-dependent synthesis of carbamyl-phosphate from
glutamine or ammonia and bicarbonate. This important
enzyme initiates both the urea cycle and the
biosynthesis of arginine and/or pyrimidines. The
carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes
is a heterodimer of a small and large chain. The small
chain promotes the hydrolysis of glutamine to ammonia,
which is used by the large chain to synthesize carbamoyl
phosphate. See pfam00988. The small chain has a GATase
domain in the carboxyl terminus. See pfam00117. The ATP
binding domain (this one) has an ATP-grasp fold.
Length = 211
Score = 261 bits (668), Expect = 4e-70
Identities = 94/210 (44%), Positives = 127/210 (60%), Gaps = 6/210 (2%)
Query: 115 DKITAKKTAQQLGIPVVPGSGEVYPHT---AMPIAKEIGFPVLVKASAGGGGRGMRIAYS 171
DK+ K ++ G+P VPG+ T A+ AKEIG+PV++KA+ GGGG GM IA +
Sbjct: 1 DKVLFKAAMKEAGVPTVPGT-AGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARN 59
Query: 172 ENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQR 231
E +L+E A +EA AAFGN V +EK L+ P+HIE Q+ D GN I R+CS QR
Sbjct: 60 EEELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQR 119
Query: 232 RNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE--NGQFYFIEMNTR 289
R QK E A S ++ ++R + E VK + + Y GAGT+EF + +G++YFIEMNTR
Sbjct: 120 RTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNTR 179
Query: 290 LQVEHPVTEAITGIDLVHEQIYVASENRLS 319
LQV H + E TG DL E +A L
Sbjct: 180 LQVSHALAEKATGYDLAKEAAKIALGYPLP 209
>gnl|CDD|144029 pfam00289, CPSase_L_chain, Carbamoyl-phosphate synthase L chain,
N-terminal domain. Carbamoyl-phosphate synthase
catalyses the ATP-dependent synthesis of
carbamyl-phosphate from glutamine or ammonia and
bicarbonate. This important enzyme initiates both the
urea cycle and the biosynthesis of arginine and/or
pyrimidines. The carbamoyl-phosphate synthase (CPS)
enzyme in prokaryotes is a heterodimer of a small and
large chain. The small chain promotes the hydrolysis of
glutamine to ammonia, which is used by the large chain
to synthesize carbamoyl phosphate. See pfam00988. The
small chain has a GATase domain in the carboxyl
terminus. See pfam00117.
Length = 109
Score = 176 bits (448), Expect = 1e-44
Identities = 68/109 (62%), Positives = 84/109 (77%)
Query: 2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYL 61
I K+L+ANRGEIA+RI+RA +ELGI TVAV+S D+ + HVRLADE+ +GP + +SYL
Sbjct: 1 IKKVLVANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPGPASESYL 60
Query: 62 NIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHI 110
NI++I+ E GADAIHPGYGFLSENA+FAE E I FIGPS E I
Sbjct: 61 NIERILDIAEKEGADAIHPGYGFLSENAEFAEACEKAGITFIGPSPEAI 109
>gnl|CDD|145767 pfam02785, Biotin_carb_C, Biotin carboxylase C-terminal domain.
Biotin carboxylase is a component of the acetyl-CoA
carboxylase multi-component enzyme which catalyses the
first committed step in fatty acid synthesis in animals,
plants and bacteria. Most of the active site residues
reported in reference are in this C-terminal domain.
Length = 107
Score = 163 bits (414), Expect = 1e-40
Identities = 54/107 (50%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 333 ECRINAEDPE-NFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKN 391
E RI AEDP F+P+PG+IT + PGG G+R+DS Y+G V YYDS+IAKLIVHG +
Sbjct: 1 EARIYAEDPANGFLPSPGKITRYRFPGGPGVRVDSGVYEGDEVSPYYDSMIAKLIVHGPD 60
Query: 392 RKECMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLE 438
R+E + RL RAL E I+G+KT IP + ++++ D G D +LE
Sbjct: 61 REEAIARLRRALAETRIEGVKTNIPFLRAILEHPDFRAGEVDTGFLE 107
>gnl|CDD|30806 COG0458, CarB, Carbamoylphosphate synthase large subunit (split
gene in MJ) [Amino acid transport and metabolism /
Nucleotide transport and metabolism].
Length = 400
Score = 89.2 bits (221), Expect = 2e-18
Identities = 100/400 (25%), Positives = 160/400 (40%), Gaps = 46/400 (11%)
Query: 17 ILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGAD 76
+A KE G V V+S + LAD+ P +K+ I E D
Sbjct: 21 ACKALKEEGYGVVLVNSNPATIMTDPELADKVYIE--PITKEPVEKI------IEKERPD 72
Query: 77 AIHPGYG-----FLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVV 131
AI P G + K +LE + ++ +G E I+I DK K+ +++GIPV
Sbjct: 73 AILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP 132
Query: 132 PGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFG 191
A IA EIG+PV+VK S G GG G IAY+E +L E I E L A
Sbjct: 133 SRIAHSVEE-ADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEELEEII----EEGLRASP 187
Query: 192 NDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVIS-AQDR 250
+ V IE+ + + E ++ DG N I C+++ + S ++ AQ
Sbjct: 188 VEEVLIEESIIGWKEFEYEVVRDGKDNCIV----VCNMENLDPMGVHTGDSITVAPAQTL 243
Query: 251 TEIGETCVKAM-----KKIDYRGAGTIEFLYEN--GQFYFIEMNTRLQVEHPVTEAITGI 303
T+ ++ ++I G I+F + G+ Y IE+N R+ + TG
Sbjct: 244 TDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSSALASKATGY 303
Query: 304 DLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGLGIR 363
+ +A L + DIT A + + IP + A LG +
Sbjct: 304 PIAKVAAKLAVGYTLDEIRNDITGRTPASF-EPSLDYVVTKIPRFDFEKFPGADRRLGTQ 362
Query: 364 MDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRAL 403
M S + +++ G+ +E + + R+L
Sbjct: 363 MKS---------------VGEVMAIGRTFEEALQKALRSL 387
>gnl|CDD|31374 COG1181, DdlA, D-alanine-D-alanine ligase and related ATP-grasp
enzymes [Cell envelope biogenesis, outer membrane].
Length = 317
Score = 66.1 bits (161), Expect = 2e-11
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 22/224 (9%)
Query: 81 GYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPG----SGE 136
+G E+ +LE I ++G DKI K+ + G+PV P E
Sbjct: 69 LHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDE 128
Query: 137 VYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVY 196
+ + +GFP+ VK + G G E DL A++ LA + V
Sbjct: 129 YSSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALE------LAFKYDRDVL 182
Query: 197 IEKYLENPRHIEVQIFGD-------GMGNAIHFGERDCSVQRRNQKIWEEAHSPV--ISA 247
E+ + R IEV + G+ +G GE + + + ++
Sbjct: 183 REQGI-TGREIEVGVLGNDYEEQALPLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTD 241
Query: 248 QDRTEIGETCVKAMKKIDYRGAGTIEFLY--ENGQFYFIEMNTR 289
+ EI E ++A K + G ++F + G+F +E+NT
Sbjct: 242 EIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTN 285
>gnl|CDD|30376 COG0026, PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR
synthetase) [Nucleotide transport and metabolism].
Length = 375
Score = 61.0 bits (148), Expect = 6e-10
Identities = 60/289 (20%), Positives = 112/289 (38%), Gaps = 26/289 (8%)
Query: 3 SKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLN 62
+ I G++ + A LGI + + AD+ A ++AD + ++ D
Sbjct: 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPA--AQVADRVIV----AAYDDPEA 55
Query: 63 IQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKT 122
++++ A C+V + F + A+ E L + PS + ++I D++ K+
Sbjct: 56 LRELAAKCDVITYE-------FENVPAEALEKLAASV--KVFPSPDALRIAQDRLVEKQF 106
Query: 123 AQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGG-GGRGMRIAYSENDLSEAIDQ 181
+ G+PV P A ++GFP ++K GG G+G S+ DL
Sbjct: 107 LDKAGLPVAPFQVVDSAEELDAAAADLGFPAVLKTRRGGYDGKGQWRIRSDADLELRAAG 166
Query: 182 ARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAH 241
+E+++ R I V I + F +V R A
Sbjct: 167 LAEG-------GVPVLEEFVPFEREISV-IVARSNDGEVAFYPVAENVHRNGILRTSIAP 218
Query: 242 SPVISAQDRTEIGETCVKAMKKIDYRGAGTIE-FLYENGQFYFIEMNTR 289
+ I + + E K +++DY G +E F+ +G+ E+ R
Sbjct: 219 AR-IPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIAPR 266
>gnl|CDD|30377 COG0027, PurT, Formate-dependent phosphoribosylglycinamide
formyltransferase (GAR transformylase) [Nucleotide
transport and metabolism].
Length = 394
Score = 53.7 bits (129), Expect = 9e-08
Identities = 44/200 (22%), Positives = 86/200 (43%), Gaps = 15/200 (7%)
Query: 4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNI 63
K+++ GE+ + + LG+ +AV A++ AM V A S I L+
Sbjct: 14 KVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQV--AHRSYVI-------DMLDG 64
Query: 64 QQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTA 123
+ A E D I P ++ +A LE+ + P++ K+ ++ ++ A
Sbjct: 65 DALRAVVEREKPDYIVPEIEAIATDALVE--LEEEGYTVV-PNARATKLTMNREGIRRLA 121
Query: 124 -QQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQA 182
++LG+P ++IGFP +VK G+G + S D+ +A + A
Sbjct: 122 AEELGLPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYA 181
Query: 183 RSEALAAFGNDAVYIEKYLE 202
+ G+ V +E++++
Sbjct: 182 QQGGRG--GSGRVIVEEFVK 199
>gnl|CDD|35591 KOG0370, KOG0370, KOG0370, Multifunctional pyrimidine synthesis
protein CAD (includes carbamoyl-phophate synthetase,
aspartate transcarbamylase, and glutamine
amidotransferase) [General function prediction only].
Length = 1435
Score = 51.5 bits (123), Expect = 4e-07
Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 15/218 (6%)
Query: 95 LEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVL 154
L + +K +G S E I ++ + +G+ A A+++G+PVL
Sbjct: 1013 LHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKELTSLEEAKKFAEKVGYPVL 1072
Query: 155 VKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGND-AVYIEKYLENPRHIEVQIFG 213
V+ S G M + YSE+DL ++QA +A D V I K++E + I+V
Sbjct: 1073 VRPSYVLSGAAMNVVYSESDLKSYLEQA-----SAVSPDHPVVISKFIEGAKEIDVDAVA 1127
Query: 214 DGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRT-EIGETCVKAMKKI----DYRG 268
+H S N + + V+ QD + + E K+ G
Sbjct: 1128 SDGKVLVHA----ISEHVENAGVHSGDATLVLPPQDLSADTLERIKDIAAKVAKALKITG 1183
Query: 269 AGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLV 306
++ + ++ + IE N R P G+D +
Sbjct: 1184 PFNMQIIAKDNELKVIECNVRASRSFPFVSKTLGVDFI 1221
Score = 39.9 bits (93), Expect = 0.001
Identities = 54/290 (18%), Positives = 112/290 (38%), Gaps = 39/290 (13%)
Query: 18 LRACKELGIPTVAVHSTADSGAMHVRLADE--SVCIGPPSSKDSYLNIQQIVAACEVTGA 75
++A KE I T+ ++ + LAD+ + + P + G
Sbjct: 404 IKALKEENIFTILINPNIATVQTSKGLADKVYFLPVTPEYVTKVIKAERPDGILLTFGGQ 463
Query: 76 DAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG 135
A++ G L + FA+ + +K +G + I D+ + ++ + P
Sbjct: 464 TALNCGV-ELDKAGVFAQ----YGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSEA 518
Query: 136 EVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAV 195
A+ A+ +G+PV+V+A+ GG G A +E +L + QA + + +
Sbjct: 519 VSTIEEALEAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALALS------PQI 572
Query: 196 YIEKYLENPRHIEVQIFGDGMGNA-------------IHFGERDCSVQRRNQKIWEEAHS 242
+EK L+ + +E ++ D N IH G+ +
Sbjct: 573 LVEKSLKGWKEVEYEVVRDAYDNCITVCNMENFDPLGIHTGDSIVVAPSQ---------- 622
Query: 243 PVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY--ENGQFYFIEMNTRL 290
+S ++ + T +K ++ + G I++ + ++ IE+N RL
Sbjct: 623 -TLSDEEYQMLRTTAIKVIRHLGVVGECNIQYALNPYSLEYRIIEVNARL 671
>gnl|CDD|30500 COG0151, PurD, Phosphoribosylamine-glycine ligase [Nucleotide
transport and metabolism].
Length = 428
Score = 50.6 bits (121), Expect = 9e-07
Identities = 50/219 (22%), Positives = 83/219 (37%), Gaps = 29/219 (13%)
Query: 92 AEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVY--PHTAMPIAKEI 149
+ L I GP+ ++ G K AK ++ GIP EV+ P A E
Sbjct: 80 VDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPT--AEYEVFTDPEEAKAYIDEK 137
Query: 150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEV 209
G P++VKA G+G+ +A + + A+D+ V IE++L+ +
Sbjct: 138 GAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDGEE-FSL 196
Query: 210 QIFGDGMGNAIHFGERDCSVQRRNQKIWEE------------AHSPVISAQD----RTEI 253
Q F DG I + Q +++ ++ + +P I+ + EI
Sbjct: 197 QAFVDG-KTVIPMP----TAQ-DHKRAYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEI 250
Query: 254 GETCVKAMKK--IDYRGAGTIEFLYENGQFYFIEMNTRL 290
E V+ M K +RG + IE N R
Sbjct: 251 VEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFNARF 289
>gnl|CDD|145401 pfam02222, ATP-grasp, ATP-grasp domain. This family does not
contain all known ATP-grasp domain members. This family
includes a diverse set of enzymes that possess
ATP-dependent carboxylate-amine ligase activity.
Length = 171
Score = 47.6 bits (114), Expect = 6e-06
Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 16/171 (9%)
Query: 123 AQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGG-GGRGMRIAYSENDLSEAIDQ 181
Q+LG+P + +E+G+P ++KA GG G+G + SE D+
Sbjct: 1 LQKLGLPTPRFMAAESLEELIEAGQELGYPCVLKARRGGYDGKGQYVVRSEADI------ 54
Query: 182 ARSEALAAFGNDAVYIEKYLENPRHIEVQI--FGDGMGNAIHFGERDCSVQRRNQKIWEE 239
+A G V +E+++ + + V + DG F ++Q
Sbjct: 55 --PQAWEELGGGPVIVEEFVPFDKELSVLVVRSVDG---ETAFYPPVETIQEDGICHESV 109
Query: 240 AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIE-FLYENGQFYFIEMNTR 289
A + V + + E K + ++ G +E F+ +G E+ R
Sbjct: 110 APARV-PDSQQAKAQEIAKKIVDELGGVGIFGVELFVLPDGDLLVNELAPR 159
>gnl|CDD|30538 COG0189, RimK, Glutathione synthase/Ribosomal protein S6
modification enzyme (glutaminyl transferase) [Coenzyme
metabolism / Translation, ribosomal structure and
biogenesis].
Length = 318
Score = 44.2 bits (104), Expect = 8e-05
Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 19/221 (8%)
Query: 74 GADAIHPGYG-FLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVP 132
D I +F + E + I + I+ +K+ + + GIPV P
Sbjct: 78 ELDVIIMRKDPPFDFATRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPV-P 135
Query: 133 GSGEVY--PHTAMPIAKEIGFPVLVKASAGGGGRG-MRIAYSENDLSEAIDQARSEALAA 189
+ A +A+ +GFPV++K G GGRG + ++ +L + E L
Sbjct: 136 PTLITRDPDEAAEFVAEHLGFPVVLKPLDGSGGRGVFLVEDADPELLSLL-----ETLTQ 190
Query: 190 FGNDAVYIEKYLENPRHIEVQIF-GDGMGNAIHFGERDCSVQ--RRNQKIWEEAHSPVIS 246
G + +++Y+ + + ++ G G AI+ R + R N A ++
Sbjct: 191 EGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIYALARIPASGDFRSNLARGGRAEPCELT 250
Query: 247 AQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMN 287
++ E VKA + G ++ + + Y E+N
Sbjct: 251 EEEE----ELAVKAAPALGLGLVG-VDIIEDKDGLYVTEVN 286
>gnl|CDD|35458 KOG0237, KOG0237, KOG0237, Glycinamide ribonucleotide synthetase
(GARS)/Aminoimidazole ribonucleotide synthetase (AIRS)
[Nucleotide transport and metabolism].
Length = 788
Score = 38.0 bits (88), Expect = 0.006
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 2/125 (1%)
Query: 92 AEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF 151
A++L I GPS + ++ K +K + IP P A +
Sbjct: 85 ADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSATD 144
Query: 152 P-VLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQ 210
+++KA G+G+ +A S+ + EA+D + + V IE+ LE +
Sbjct: 145 KALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLEG-EEVSFL 203
Query: 211 IFGDG 215
F DG
Sbjct: 204 AFTDG 208
>gnl|CDD|30394 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy
production and conversion].
Length = 387
Score = 36.7 bits (85), Expect = 0.012
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 119 AKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIG-FPVLVKASAGGGGRG----MRIAYSEN 173
AK+ + GIPV PG P A AKE+G PV+VKA GGRG +++A S
Sbjct: 8 AKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPE 67
Query: 174 DLSEAIDQ 181
+ EA ++
Sbjct: 68 EAKEAAEE 75
>gnl|CDD|32413 COG2232, COG2232, Predicted ATP-dependent carboligase related to
biotin carboxylase [General function prediction only].
Length = 389
Score = 35.0 bits (80), Expect = 0.045
Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 252 EIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIY 311
E + ++++ G+ ++F+ + Y IE+N R+Q E +GI+L I
Sbjct: 236 EAERLAEELVEELGLVGSNGVDFVLNDKGPYVIEVNPRIQGTLECIERSSGINLFRLHI- 294
Query: 312 VASENRL-------SVQQKDITFSGHAIECRINAEDPENFIPNPGEIT 352
A + L K I ++ + I + IP PG +
Sbjct: 295 QAFDGELPERPKPRGYACKRILYAPRTVRVPILKLSWTHDIPRPGTVI 342
>gnl|CDD|110097 pfam01071, GARS_A, Phosphoribosylglycinamide synthetase, ATP-grasp
(A) domain. Phosphoribosylglycinamide synthetase
catalyses the second step in the de novo biosynthesis of
purine. The reaction catalysed by
Phosphoribosylglycinamide synthetase is the ATP-
dependent addition of 5-phosphoribosylamine to glycine
to form 5'phosphoribosylglycinamide. This domain is
related to the ATP-grasp domain of biotin
carboxylase/carbamoyl phosphate synthetase (see
pfam02786).
Length = 193
Score = 34.5 bits (80), Expect = 0.056
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 147 KEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRH 206
+E GFP +VKA G+G+ +A + +A+D+ + + V IE++LE
Sbjct: 34 REAGFPAVVKADGLAAGKGVIVAMDNEEAIKAVDEILEQKKFGEAGEPVVIEEFLEGE-E 92
Query: 207 IEVQIFGDG 215
+ V F DG
Sbjct: 93 VSVLAFVDG 101
>gnl|CDD|99985 cd03814, GT1_like_2, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in bacteria and eukaryotes..
Length = 364
Score = 31.0 bits (71), Expect = 0.67
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 5 ILIANRGEIALRILRACKELGIPTVAVHST 34
+ IA G + L LRA + LGIP V + T
Sbjct: 87 VHIATPGPLGLAALRAARRLGIPVVTSYHT 116
>gnl|CDD|33705 COG3919, COG3919, Predicted ATP-grasp enzyme [General function
prediction only].
Length = 415
Score = 31.1 bits (70), Expect = 0.69
Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 15/176 (8%)
Query: 121 KTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGG----GRGMRIAYSENDLS 176
A++LG+P P + V + E+ FPV++K GG R ++N
Sbjct: 120 NRAEELGLPY-PKTYLV-NSEIDTLVDELTFPVILKPGMGGSVHFEARAKAFTAADN--- 174
Query: 177 EAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKI 236
E + A A G D V +++++ P E Q + + H + + +R Q
Sbjct: 175 EEMKLALHRAYEEIGPDNVVVQEFI--PGGGENQFSYAALWDKGH-PVAEFTARRLRQYP 231
Query: 237 WEEAH-SPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE--NGQFYFIEMNTR 289
+ + S V+ D ++ + ++ I++ G +EF Y+ +G + +++N R
Sbjct: 232 VDFGYTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPR 287
>gnl|CDD|30719 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion
transport and metabolism].
Length = 653
Score = 31.0 bits (70), Expect = 0.70
Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 24/155 (15%)
Query: 114 GDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSEN 173
G +I +K ++ LG+PVVP + + I K + G I
Sbjct: 125 GIRIDIEKLSKLLGVPVVPTVA-KRGEGLEELKRAIIELAESKTTPREVDYGEEIEEEIK 183
Query: 174 DLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRN 233
+L + R A+ D +E L+ P V+
Sbjct: 184 ELEALSEDPRWLAIKLL-EDDELVEAVLKEPE---------------------KRVEELL 221
Query: 234 QKIWEEAHSPVISAQDR-TEIGETCVKAMKKIDYR 267
+++ EE ++ A R I +K+ +
Sbjct: 222 EELSEEEGHLLLIADARYALIERILRSVVKQEEEE 256
>gnl|CDD|88405 cd05008, SIS_GlmS_GlmD_1, SIS (Sugar ISomerase) domain repeat 1
found in Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and
phosphosugar binding proteins. GlmS contains a
N-terminal glutaminase domain and two C-terminal SIS
domains and catalyzes the first step in hexosamine
metabolism, converting fructose 6-phosphate into
glucosamine 6-phosphate using glutamine as nitrogen
source. The glutaminase domain hydrolyzes glutamine to
glutamate and ammonia. Ammonia is transferred through a
channel to the isomerase domain for glucosamine
6-phosphate synthesis. The end product of the pathway is
N-acetylglucosamine, which plays multiple roles in
eukaryotic cells including being a building block of
bacterial and fungal cell walls. In the absence of
glutamine, GlmS catalyzes the isomerization of fructose
6-phosphate into glucose 6- phosphate (PGI-like
activity). Glucosamine-6-phosphate deaminase (GlmD)
contains two SIS domains and catalyzes the deamination
and isomerization of glucosamine-6-phosphate into
fructose-6-phosphate with the release of ammonia; in
presence of high ammonia concentration, GlmD can
catalyze the reverse reaction..
Length = 126
Score = 30.9 bits (70), Expect = 0.77
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 5 ILIANRGEIA--LRILRACKELGIPTVAVHSTADSGAMHVRLADESVCI--GPPSSKDS 59
I I+ GE A L LR KE G TVA+ T G+ R AD + + GP S +
Sbjct: 51 IAISQSGETADTLAALRLAKEKGAKTVAI--TNVVGSTLAREADYVLYLRAGPEISVAA 107
>gnl|CDD|31137 COG0794, GutQ, Predicted sugar phosphate isomerase involved in
capsule formation [Cell envelope biogenesis, outer
membrane].
Length = 202
Score = 30.6 bits (69), Expect = 0.95
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 5 ILIANRGEIA--LRILRACKELGIPTVAVHSTADSGAMHVRLADESVCI 51
I I+ GE L + K LG +A+ S DS + AD + I
Sbjct: 91 IAISGSGETKELLNLAPKAKRLGAKLIAITSNPDSSL--AKAADVVLVI 137
>gnl|CDD|29354 cd01170, THZ_kinase, 4-methyl-5-beta-hydroxyethylthiazole (Thz)
kinase catalyzes the phosphorylation of the
hydroxylgroup of Thz. A reaction that allows cells to
recycle Thz into the thiamine biosynthesis pathway, as
an alternative to its synthesis from cysteine, tyrosine
and 1-deoxy-D-xylulose-5-phosphate..
Length = 242
Score = 29.8 bits (67), Expect = 1.4
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
Query: 105 PSSEHIKIMGDKITAKKTAQQLGIPVV--P---GSGEVYPHTAMPIAKEIGFPVL----- 154
+SE I+ M + A K A QLG PVV P G+ A + E V+
Sbjct: 60 LTSEQIEAM---LKAGKAANQLGKPVVLDPVGVGATSFRTEVAKELLAEGQPTVIRGNAS 116
Query: 155 -VKASAGGGGRGMRIAYSENDLSEAIDQARSEA 186
+ A AG G G + S +D +A++ A++ A
Sbjct: 117 EIAALAGLTGLGKGVDSSSSDEEDALELAKALA 149
>gnl|CDD|144821 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family.
This family of proteins utilize NAD as a cofactor. The
proteins in this family use nucleotide-sugar substrates
for a variety of chemical reactions.
Length = 235
Score = 29.6 bits (67), Expect = 1.7
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 6 LIANRGEIALRILRACKELGIPTVAVHSTADS--GAMHVRLADESVCIGPPS----SKDS 59
I L +L A + G+ V +++ G + E +GP S +K
Sbjct: 88 FIRANVLGTLNLLEAARRAGVKRF-VFASSSEVYGDVADPPITEDTPLGPLSPYAAAK-- 144
Query: 60 YLNIQQIVAACEVTGADAI 78
+ ++A G A+
Sbjct: 145 LAGERLVLAYARAYGLRAV 163
>gnl|CDD|111971 pfam03133, TTL, Tubulin-tyrosine ligase family. Tubulins and
microtubules are subjected to several post-translational
modifications of which the reversible
detyrosination/tyrosination of the carboxy-terminal end
of most alpha-tubulins has been extensively analysed.
This modification cycle involves a specific
carboxypeptidase and the activity of the
tubulin-tyrosine ligase (TTL). The true physiological
function of TTL has so far not been established.
Tubulin-tyrosine ligase (TTL) catalyses the
ATP-dependent post-translational addition of a tyrosine
to the carboxy terminal end of detyrosinated
alpha-tubulin. In normally cycling cells, the
tyrosinated form of tubulin predominates. However, in
breast cancer cells, the detyrosinated form frequently
predominates, with a correlation to tumour
aggressiveness. On the other hand, 3-nitrotyrosine has
been shown to be incorporated, by TTL, into the carboxy
terminal end of detyrosinated alpha-tubulin. This
reaction is not reversible by the carboxypeptidase
enzyme. Cells cultured in 3-nitrotyrosine rich medium
showed evidence of altered microtubule structure and
function, including altered cell morphology, epithelial
barrier dysfunction, and apoptosis.
Length = 291
Score = 29.6 bits (67), Expect = 1.9
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 11/50 (22%)
Query: 155 VKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENP 204
VK SA GRG+RI NDLS+ + Q +S L ++KY+E P
Sbjct: 71 VKPSASARGRGIRIT---NDLSQILKQIQSRPL--------VVQKYIERP 109
>gnl|CDD|29951 cd00958, DhnA, Class I fructose-1,6-bisphosphate (FBP) aldolases of
the archaeal type (DhnA homologs) found in bacteria and
archaea. Catalysis of the enzymes proceeds via a
Schiff-base mechanism like other class I aldolases,
although this subfamily is clearly divergent based on
sequence similarity to other class I and class II
(metal dependent) aldolase subfamilies..
Length = 235
Score = 29.4 bits (66), Expect = 2.2
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 17/71 (23%)
Query: 16 RILRACKELGIPTVAV----------HSTADSGAMHVRLADES----VCIGPPSSKDSYL 61
R+ + G+P +A D A R+ E V +S+
Sbjct: 113 RVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTGDAESF- 171
Query: 62 NIQQIVAACEV 72
+++V C V
Sbjct: 172 --KEVVEGCPV 180
>gnl|CDD|30844 COG0498, ThrC, Threonine synthase [Amino acid transport and
metabolism].
Length = 411
Score = 29.1 bits (65), Expect = 2.4
Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 15/141 (10%)
Query: 22 KELGIPTVAVHSTADSGA---MHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAI 78
KELG T+ S+ ++GA + A V + P K S + Q++ GA I
Sbjct: 122 KELGAKTILCASSGNTGASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLT----LGAHVI 177
Query: 79 HPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLG--IP---VVP- 132
F E + S ++ G K A + A+QLG P VVP
Sbjct: 178 AVDGNFDDAQELVKEAANREGLLSAVNSINPYRLEGQKTYAFEIAEQLGWKAPDHVVVPV 237
Query: 133 GSGEVYPHTAMPIAKEIGFPV 153
G+G A+ + G P+
Sbjct: 238 GNGGNL--LAIYKGFKEGLPI 256
>gnl|CDD|145523 pfam02421, FeoB_N, Ferrous iron transport protein B. Escherichia
coli has an iron(II) transport system (feo) which may
make an important contribution to the iron supply of the
cell under anaerobic conditions. FeoB has been
identified as part of this transport system. FeoB is a
large 700-800 amino acid integral membrane protein. The
N terminus contains a P-loop motif suggesting that iron
transport may be ATP dependent.
Length = 188
Score = 29.0 bits (66), Expect = 2.4
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 113 MGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKA----SAGGGGRGMRI 168
G KI KK ++ LG+PVVP S K G L A + G ++I
Sbjct: 120 KGIKIDIKKLSELLGVPVVPTSA----------RKGEGIDELKDAIIEVAEGKVKPPLKI 169
Query: 169 AYSENDLSEAIDQ 181
Y E ++ EAI +
Sbjct: 170 NYGE-EIEEAISE 181
>gnl|CDD|133280 cd01879, FeoB, Ferrous iron transport protein B (FeoB) subfamily.
E. coli has an iron(II) transport system, known as feo,
which may make an important contribution to the iron
supply of the cell under anaerobic conditions. FeoB has
been identified as part of this transport system. FeoB
is a large 700-800 amino acid integral membrane protein.
The N terminus contains a P-loop motif suggesting that
iron transport may be ATP dependent.
Length = 158
Score = 28.6 bits (65), Expect = 3.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 114 GDKITAKKTAQQLGIPVVPGSG 135
G KI K ++ LG+PVVP S
Sbjct: 118 GIKIDLDKLSELLGVPVVPTSA 139
>gnl|CDD|173931 cd08172, GlyDH-like1, Glycerol dehydrogenases-like. Glycerol
dehydrogenases-like. The proteins in this family have
not been characterized, but they show sequence homology
with glycerol dehydrogenase. Glycerol dehydrogenases
(GlyDH) is a key enzyme in the glycerol dissimilation
pathway. In anaerobic conditions, many microorganisms
utilize glycerol as a source of carbon through coupled
oxidative and reductive pathways. One of the pathways
involves the oxidation of glycerol to dihydroxyacetone
with the reduction of NAD+ to NADH catalyzed by glycerol
dehydrogenases. Dihydroxyacetone is then phosphorylated
by dihydroxyacetone kinase and enters the glycolytic
pathway for further degradation. The activity of GlyDH
is zinc-dependent. The zinc ion plays a role in
stabilizing an alkoxide intermediate at the active site.
Length = 347
Score = 28.3 bits (64), Expect = 4.1
Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 33/75 (44%)
Query: 59 SYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKI- 117
S NI+++ A + GAD I I I G K+
Sbjct: 61 SEENIERLAAQAKENGADVI-------------------------------IGIGGGKVL 89
Query: 118 -TAKKTAQQLGIPVV 131
TAK A +LG+PV+
Sbjct: 90 DTAKAVADRLGVPVI 104
>gnl|CDD|38938 KOG3734, KOG3734, KOG3734, Predicted phosphoglycerate mutase
[Carbohydrate transport and metabolism].
Length = 272
Score = 28.0 bits (62), Expect = 4.6
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 344 FIPNPGEITYFHAPGGLG----IRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRL 399
PG P I D + G+ V YD + + G++ ++C R+
Sbjct: 122 IRVEPGLFEPEKWPKDGKFPFFISPDELKFPGFPVDLNYDPVYKETPRWGESLEDCNDRI 181
Query: 400 NRALNEIII 408
+ I
Sbjct: 182 QKVFKAIAD 190
>gnl|CDD|31527 COG1336, COG1336, Uncharacterized protein predicted to be involved
in DNA repair (RAMP superfamily) [DNA replication,
recombination, and repair].
Length = 298
Score = 28.0 bits (62), Expect = 4.8
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 129 PVVPGSGEVYPHTAMPIAKE--IGFPVLVKASAGGGGRGMRIAY---SENDLSEAIDQAR 183
PV G+G+ +PI +E GFP++ +S G R +A E++L E I++
Sbjct: 12 PVHIGAGQGLGVIDLPIQRERHTGFPIIPGSSLKGALRSFLLAKLEDKEDELGEKIEKCV 71
Query: 184 SEA 186
+
Sbjct: 72 FGS 74
>gnl|CDD|39212 KOG4009, KOG4009, KOG4009, NADH-ubiquinone oxidoreductase, subunit
NDUFB10/PDSW [Energy production and conversion].
Length = 156
Score = 27.8 bits (61), Expect = 5.6
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 197 IEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISA 247
+E+Y + R+ V+ +GD G + R ++++++ IWE H P +A
Sbjct: 105 VEQYEDATRNYFVK-YGDLGGYS---SARKAYMKQKHRMIWERRHGPKPAA 151
>gnl|CDD|30414 COG0065, LeuC, 3-isopropylmalate dehydratase large subunit [Amino
acid transport and metabolism].
Length = 423
Score = 27.8 bits (62), Expect = 5.9
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 75 ADAIHP--GYGFLSENAKFAEILEDHHIK----FIGPSS----EHIKIMGDKITAKKTAQ 124
A + P + +N +E IK FIG + E ++ + + +K A
Sbjct: 266 ASDLEPQVAWPTNPDNVVPVSEVEPDPIKIDQVFIGSCTNGRIEDLRAAAEILKGRKVAP 325
Query: 125 QLGIPVVPGSGEVY 138
+ VVPGS V
Sbjct: 326 GVRAIVVPGSRRVK 339
>gnl|CDD|37018 KOG1807, KOG1807, KOG1807, Helicases [Replication, recombination
and repair].
Length = 1025
Score = 27.7 bits (61), Expect = 6.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 92 AEILEDHHIKFIGPSSEHIKIMGD 115
AE+LE H I + P +EH+ ++GD
Sbjct: 730 AEVLEAHIIAALTPHTEHVILIGD 753
>gnl|CDD|48077 cd01976, Nitrogenase_MoFe_alpha, Nitrogenase_MoFe_alpha_II:
Nitrogenase MoFe protein, beta subunit. A group of
proteins similar to the alpha subunit of the MoFe
protein of the molybdenum (Mo-) nitrogenase. The
nitrogenase enzyme catalyzes the ATP-dependent reduction
of dinitrogen to ammonia. The Mo-nitrogenase is the most
widespread and best characterized of these systems.
Mo-nitrogenase consists of the MoFe protein (component
1) and the Fe protein (component 2). MoFe is an
alpha2beta2 tetramer. Each alphabeta pair of MoFe
contains one P-cluster (at the alphabeta interface) and,
one molecule of iron molybdenum cofactor (FeMoco)
contained within the alpha subunit. The Fe protein
contains a single [4Fe-4S] cluster. Electrons are
transferred from the [4Fe-4S] cluster of the Fe protein
to the P-cluster of the MoFe and in turn to FeMoCo, the
site of substrate reduction..
Length = 421
Score = 27.5 bits (61), Expect = 7.5
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 110 IKIMGDKI--TAKKTAQQLGIPVVPGSGEVY 138
+ ++GD I A+K +++LGIPVVP E +
Sbjct: 111 VGLIGDDIEAVARKASKELGIPVVPVRCEGF 141
>gnl|CDD|31945 COG1759, COG1759, ATP-utilizing enzymes of ATP-grasp superfamily
(probably carboligases) [General function prediction
only].
Length = 361
Score = 27.5 bits (61), Expect = 7.5
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 146 AKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQ-ARSEALAAFGNDAVYIEKYLENP 204
+EI PV+VK GGRG IA S + E ++ + + IE+Y+
Sbjct: 146 PEEIDRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVGA 205
Query: 205 R 205
Sbjct: 206 P 206
>gnl|CDD|37481 KOG2270, KOG2270, KOG2270, Serine/threonine protein kinase involved
in cell cycle control [Signal transduction mechanisms,
Cell cycle control, cell division, chromosome
partitioning].
Length = 520
Score = 27.3 bits (60), Expect = 7.7
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 245 ISAQDRTEIGETCVKAMKKIDYRGAGTI-----EF--LYENGQFYFIEMNTRLQVEHP 295
+S E+ + CV+ M+++ Y+ + EF LY +G+ Y I+++ ++ +HP
Sbjct: 261 LSTSKARELYQQCVRIMRRL-YQKCRLVHADLSEFNLLYHDGKLYIIDVSQSVEHDHP 317
>gnl|CDD|185679 cd02064, FAD_synthetase_N, FAD synthetase, N-terminal domain of the
bifunctional enzyme. FAD synthetase_N. N-terminal
domain of the bifunctional riboflavin biosynthesis
protein riboflavin kinase/FAD synthetase. These enzymes
have both ATP:riboflavin 5'-phosphotransferase and
ATP:FMN-adenylyltransferase activities. The N-terminal
domain is believed to play a role in the adenylylation
reaction of FAD synthetases. The C-terminal domain is
thought to have kinase activity. FAD synthetase is
present among all kingdoms of life. However, the
bifunctional enzyme is not found in mammals, which use
separate enzymes for FMN and FAD formation.
Length = 180
Score = 27.1 bits (61), Expect = 9.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 266 YRGAGTIEFLYENGQFYFIEM 286
+G E L E G+ Y E+
Sbjct: 113 KGRSGDAELLKELGKKYGFEV 133
>gnl|CDD|144739 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate
synthase. Previously known as uncharacterized protein
family UPF0015, a single member of this family has been
identified as an undecaprenyl diphosphate synthase.
Length = 222
Score = 27.1 bits (61), Expect = 9.2
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 12 EIALRILRACKELGIPTVAV 31
E IL C ELGI + +
Sbjct: 25 EALREILEWCLELGIKYLTL 44
>gnl|CDD|144518 pfam00946, Paramyx_RNA_pol, Paramyxovirus RNA dependent RNA
polymerase. Paramyxoviridae, like other non-segmented
negative strand RNA viruses, have an RNA-dependent RNA
polymerase composed of two subunits, a large protein L
and a phosphoprotein P. This is a protein family of the
L protein. The L protein confers the RNA polymerase
activity on the complex. The P protein acts as a
transcription factor.
Length = 1161
Score = 27.2 bits (61), Expect = 9.5
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 5/43 (11%)
Query: 294 HPVTEAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRI 336
HP+ +A D V E + L K A C I
Sbjct: 353 HPMLDAREAADKVREHMCAPKVLDLETLLK-----LLAFFCGI 390
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.318 0.137 0.399
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,434,235
Number of extensions: 294924
Number of successful extensions: 1036
Number of sequences better than 10.0: 1
Number of HSP's gapped: 992
Number of HSP's successfully gapped: 60
Length of query: 443
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 346
Effective length of database: 4,167,664
Effective search space: 1442011744
Effective search space used: 1442011744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)