RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus Liberibacter asiaticus str. psy62] (443 letters) >gnl|CDD|181492 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated. Length = 451 Score = 861 bits (2226), Expect = 0.0 Identities = 297/444 (66%), Positives = 359/444 (80%), Gaps = 4/444 (0%) Query: 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60 M KILIANRGEIALRI+RACKELGI TVAVHSTAD A+HV+LADE+VCIGP SK SY Sbjct: 1 MFDKILIANRGEIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSY 60 Query: 61 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120 LNI I++A E+TGADAIHPGYGFLSENA FAEI ED FIGPS+E I++MGDK+TAK Sbjct: 61 LNIPAIISAAEITGADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAK 120 Query: 121 KTAQQLGIPVVPGS-GEVY-PHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEA 178 T ++ G+PVVPGS G V A+ IAKEIG+PV++KA+AGGGGRGMR+ +E +L +A Sbjct: 121 ATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKA 180 Query: 179 IDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238 AR+EA AAFGN VY+EKYLENPRHIE+Q+ DG GNAIH GERDCS+QRR+QK+ E Sbjct: 181 FSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLE 240 Query: 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVT 297 EA SP I+ + R +IGE VKA K I YRGAGTIEFLYE NG+FYFIEMNTR+QVEHPVT Sbjct: 241 EAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFYFIEMNTRIQVEHPVT 300 Query: 298 EAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPE-NFIPNPGEITYFHA 356 E ITG+DLV EQI +A+ LS++Q+DI F GHAIECRINAEDP NF+P+PG+IT +H Sbjct: 301 EMITGVDLVKEQIRIAAGEPLSIKQEDIVFRGHAIECRINAEDPAKNFMPSPGKITRYHP 360 Query: 357 PGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIP 416 PGG G+R+DSA Y GYT+P YYDS+I KLIVHG+ R+E + R+ RAL+E +IDGIKTTIP Sbjct: 361 PGGPGVRVDSAVYTGYTIPPYYDSMIGKLIVHGETREEAIARMKRALSEFVIDGIKTTIP 420 Query: 417 LFQKLIKNEDIIEGNYDIHWLENK 440 L +L+ + + G+Y+IH+LE K Sbjct: 421 LHLRLLNDPNFQAGDYNIHYLEKK 444 >gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification. Length = 449 Score = 669 bits (1728), Expect = 0.0 Identities = 269/444 (60%), Positives = 342/444 (77%), Gaps = 4/444 (0%) Query: 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60 M+ KILIANRGEIALRILRACKELGI TVAVHSTAD A+HV LADE+VCIGP S SY Sbjct: 1 MLDKILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSY 60 Query: 61 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120 LNI I++A E+TGADAIHPGYGFLSENA FAE E FIGPS+E I++MGDK++A Sbjct: 61 LNIPNIISAAEITGADAIHPGYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAI 120 Query: 121 KTAQQLGIPVVPGSGEVYPHT--AMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEA 178 +T ++ G+P VPGS + + IAK IG+PV++KA+AGGGGRGMR+ ++L ++ Sbjct: 121 ETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKS 180 Query: 179 IDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238 I R+EA AAFGND VYIEKY+ENPRH+E+Q+ D GNAI+ GERDCS+QRR+QK+ E Sbjct: 181 ISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLE 240 Query: 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVT 297 EA SP ++ + R ++G+ VKA I YRGAGT+EFL + NG+FYF+EMNTR+QVEHPVT Sbjct: 241 EAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKNGEFYFMEMNTRIQVEHPVT 300 Query: 298 EAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHA 356 E ITG+DL+ EQI +A+ LS++Q+D+ GHAIECRINAEDP + F+P+PG IT + Sbjct: 301 EMITGVDLIKEQIRIAAGEPLSLKQEDVVVRGHAIECRINAEDPIKTFLPSPGRITRYLP 360 Query: 357 PGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIP 416 PGG G+R DS Y GYTVP YYDS+I KLI +GK R+ + R+ RAL+E IIDGIKTTIP Sbjct: 361 PGGPGVRWDSHVYSGYTVPPYYDSMIGKLITYGKTREVAIARMKRALSEFIIDGIKTTIP 420 Query: 417 LFQKLIKNEDIIEGNYDIHWLENK 440 Q+++++E+ G +IH+LE K Sbjct: 421 FHQRILEDENFQHGGTNIHYLEKK 444 >gnl|CDD|181524 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated. Length = 499 Score = 646 bits (1669), Expect = 0.0 Identities = 249/441 (56%), Positives = 328/441 (74%), Gaps = 3/441 (0%) Query: 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60 M KILIANRGEIA+R++RAC+ELGI TVAV+S AD A+ V+ ADE+ IGP SY Sbjct: 1 MFKKILIANRGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSY 60 Query: 61 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120 LNI++I+ + GADAIHPGYGFL+EN +FA+ E I FIGPSS+ I+ MG KI AK Sbjct: 61 LNIERIIDVAKKAGADAIHPGYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAK 120 Query: 121 KTAQQLGIPVVPGSGEVY--PHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEA 178 K ++ G+PV+PG+ E A IA+EIG+PV++KASAGGGG GMR+ YSE +L +A Sbjct: 121 KLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEDA 180 Query: 179 IDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238 I+ +S A +AFG+ V+IEKYLE PRHIE+QI D GN IH G+R+CS+QRR+QK+ E Sbjct: 181 IESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQRRHQKLIE 240 Query: 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTE 298 EA SP+++ + R +GE VKA K I+Y AGT+EFLY NG FYF+EMNTRLQVEHP+TE Sbjct: 241 EAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSNGNFYFLEMNTRLQVEHPITE 300 Query: 299 AITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPEN-FIPNPGEITYFHAP 357 +TGID+V EQI +A+ LS +Q+DIT GHAIECRINAEDP N F P+PG+I + +P Sbjct: 301 MVTGIDIVKEQIKIAAGEELSFKQEDITIRGHAIECRINAEDPLNDFAPSPGKIKRYRSP 360 Query: 358 GGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPL 417 GG G+R+DS + GY +P YYDS+I+KLIV G+ R+E + R+ RAL E +I G+KT IP Sbjct: 361 GGPGVRVDSGVHMGYEIPPYYDSMISKLIVWGRTREEAIARMRRALYEYVIVGVKTNIPF 420 Query: 418 FQKLIKNEDIIEGNYDIHWLE 438 + +++NE+ + GN H++E Sbjct: 421 HKAVMENENFVRGNLHTHFIE 441 >gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated. Length = 447 Score = 634 bits (1637), Expect = 0.0 Identities = 265/447 (59%), Positives = 354/447 (79%), Gaps = 4/447 (0%) Query: 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60 M KILIANRGEIA+RI+RAC+E+GI TVAV+S AD A+HV+LADE+VCIGP SSKDSY Sbjct: 1 MFKKILIANRGEIAVRIIRACREMGIETVAVYSEADKDALHVQLADEAVCIGPASSKDSY 60 Query: 61 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120 LNIQ I++A +TGA AIHPG+GFLSEN+KFA++ ++ +I FIGP SE I++MG+K A+ Sbjct: 61 LNIQNIISATVLTGAQAIHPGFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAR 120 Query: 121 KTAQQLGIPVVPGS-GEVY-PHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEA 178 + + G+PVVPGS GE+ A+ IAKEIG+PV+VKASAGGGGRG+RI SE +L +A Sbjct: 121 EIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEELIKA 180 Query: 179 IDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238 + A+SEA AAFG+D++YIEK++ENP+HIE QI GD GN +H GERDCS+QRRNQK+ E Sbjct: 181 FNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCSLQRRNQKVLE 240 Query: 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY-ENGQFYFIEMNTRLQVEHPVT 297 EA SPV++ + R ++GE VKA K ++Y+ AGTIEFL ++G FYF+EMNTR+QVEHP+T Sbjct: 241 EAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMNTRIQVEHPIT 300 Query: 298 EAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPE-NFIPNPGEITYFHA 356 E ITG+DLV EQI +A +LS++Q+DI +GH+IECRINAEDP+ F+P PG+I + Sbjct: 301 EMITGVDLVKEQIKIAYGEKLSIKQEDIKINGHSIECRINAEDPKNGFMPCPGKIEELYI 360 Query: 357 PGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIP 416 PGGLG+R+DSA Y GYT+P YYDS+I KLIV+GK+R+E + ++ RAL E II+G+ T I Sbjct: 361 PGGLGVRVDSAVYSGYTIPPYYDSMIGKLIVYGKDREEAIQKMKRALGEFIIEGVNTNID 420 Query: 417 LFQKLIKNEDIIEGNYDIHWLENKYLK 443 ++++E+ I+G YD ++E K + Sbjct: 421 FQFIILEDEEFIKGTYDTSFIEKKLVD 447 >gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase subunit; Validated. Length = 450 Score = 626 bits (1617), Expect = e-180 Identities = 229/442 (51%), Positives = 310/442 (70%), Gaps = 3/442 (0%) Query: 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60 M K+LIANRGEIA+RI+R C++LGI TVA++S AD A+HV++ADE+ IG P ++SY Sbjct: 1 MFQKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESY 60 Query: 61 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120 LN+++I+ + TGA+AIHPGYG LSENA FAE ++ I FIGPS++ I MG KI A+ Sbjct: 61 LNLEKIIEIAKKTGAEAIHPGYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEAR 120 Query: 121 KTAQQLGIPVVPGSGEVY--PHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEA 178 + Q G+PVVPG A+ IA++IG+PV++KASAGGGG GM++ +E +L++A Sbjct: 121 RAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKA 180 Query: 179 IDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238 + + A FGN +YIEKY+E+PRHIE+Q+ D GN ++ ER+CSVQRR+QK+ E Sbjct: 181 FESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWERECSVQRRHQKVIE 240 Query: 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQ-FYFIEMNTRLQVEHPVT 297 EA SP + + R +GE V+A K I Y AGTIEFL + + FYF+EMNTRLQVEHPVT Sbjct: 241 EAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMNTRLQVEHPVT 300 Query: 298 EAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAP 357 E ITGIDLV +Q+ +A+ +LS Q DI SGHAIE RI AEDP+ F P+PG+IT P Sbjct: 301 EEITGIDLVEQQLRIAAGEKLSFTQDDIKRSGHAIEVRIYAEDPKTFFPSPGKITDLTLP 360 Query: 358 GGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPL 417 GG G+R D A G TV +YD +IAKLI HG+ R+E + RL+ AL E+ ++GIKT IPL Sbjct: 361 GGEGVRHDHAVENGVTVTPFYDPMIAKLIAHGETREEAISRLHDALEELKVEGIKTNIPL 420 Query: 418 FQKLIKNEDIIEGNYDIHWLEN 439 +++++ G Y +L Sbjct: 421 LLQVLEDPVFKAGGYTTGFLTK 442 >gnl|CDD|183835 PRK12999, PRK12999, pyruvate carboxylase; Reviewed. Length = 1146 Score = 602 bits (1556), Expect = e-173 Identities = 219/446 (49%), Positives = 296/446 (66%), Gaps = 14/446 (3%) Query: 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRL-ADESVCIGPPSSK-D 58 I K+L+ANRGEIA+RI RA ELGI TVA++S D ++H R ADE+ IG Sbjct: 4 KIKKVLVANRGEIAIRIFRAATELGIRTVAIYSEEDKLSLH-RFKADEAYLIGEGKHPVR 62 Query: 59 SYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKIT 118 +YL+I +I+ + G DAIHPGYGFLSEN +FA + I FIGP++E ++++GDK+ Sbjct: 63 AYLDIDEIIRVAKQAGVDAIHPGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVA 122 Query: 119 AKKTAQQLGIPVVPGSGE--VYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLS 176 A+ A + G+PV+PGS A+ A+EIG+P+++KASAGGGGRGMRI SE +L Sbjct: 123 ARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELE 182 Query: 177 EAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKI 236 EA ++A+ EA AAFGND VY+EKY+ENPRHIEVQI GD GN +H ERDCSVQRR+QK+ Sbjct: 183 EAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKV 242 Query: 237 WEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY-ENGQFYFIEMNTRLQVEHP 295 E A +P +S + R I E VK + + Y AGT+EFL +G FYFIE+N R+QVEH Sbjct: 243 VEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDADGNFYFIEVNPRIQVEHT 302 Query: 296 VTEAITGIDLVHEQIYVASENRLS------VQQKDITFSGHAIECRINAEDPEN-FIPNP 348 VTE +TGID+V QI +A L Q+DI G+AI+CRI EDP N F+P+ Sbjct: 303 VTEEVTGIDIVQSQILIAEGATLHDLEIGIPSQEDIRLRGYAIQCRITTEDPANNFMPDT 362 Query: 349 GEITYFHAPGGLGIRMDS-ASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEII 407 G IT + +PGG G+R+D ++ G + YYDSL+ KL G+ ++ + R+ RAL E Sbjct: 363 GRITAYRSPGGFGVRLDGGNAFAGAEITPYYDSLLVKLTAWGRTFEQAVARMRRALREFR 422 Query: 408 IDGIKTTIPLFQKLIKNEDIIEGNYD 433 I G+KT IP + ++K+ D G+Y Sbjct: 423 IRGVKTNIPFLENVLKHPDFRAGDYT 448 >gnl|CDD|183781 PRK12833, PRK12833, acetyl-CoA carboxylase biotin carboxylase subunit; Provisional. Length = 467 Score = 564 bits (1455), Expect = e-161 Identities = 230/443 (51%), Positives = 307/443 (69%), Gaps = 6/443 (1%) Query: 2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYL 61 I K+L+ANRGEIA+RI+RA +ELG+ TVA S AD ++ R+ADE+V IGP + SYL Sbjct: 5 IRKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYL 64 Query: 62 NIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKK 121 N I+AA GADAIHPGYGFLSENA FAE +E + F+GP ++ I+ MGDK A++ Sbjct: 65 NPAAILAAARQCGADAIHPGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARR 124 Query: 122 TAQQLGIPVVPGS-GEVYP-HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAI 179 TA++ G+P VPGS G V A+ +A IG+P+++KA+AGGGGRG+R+A+ L+ + Sbjct: 125 TARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAAQLAAEL 184 Query: 180 DQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEE 239 A+ EA AAFG+ VY+E+++ RHIEVQI GDG +H ER+CS+QRR QKI EE Sbjct: 185 PLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-RVVHLFERECSLQRRRQKILEE 243 Query: 240 AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY--ENGQFYFIEMNTRLQVEHPVT 297 A SP ++ R + + V+ +++ YRGAGT+E+L+ G+FYFIEMNTR+QVEHPVT Sbjct: 244 APSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTRIQVEHPVT 303 Query: 298 EAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPE-NFIPNPGEITYFHA 356 EAITGIDLV E + +A L Q DI G A+ECRINAEDP +F PNPG I Sbjct: 304 EAITGIDLVQEMLRIADGEPLRFAQGDIALRGAALECRINAEDPLRDFFPNPGRIDALVW 363 Query: 357 PGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIP 416 P G G+R+DS Y GY VP +YDSL+AKLIVHG++R + R RAL E+ IDG+KTT P Sbjct: 364 PQGPGVRVDSLLYPGYRVPPFYDSLLAKLIVHGEDRAAALARAARALRELRIDGMKTTAP 423 Query: 417 LFQKLIKNEDIIEGNYDIHWLEN 439 L + L+ + D+ G + ++LE Sbjct: 424 LHRALLADADVRAGRFHTNFLEA 446 >gnl|CDD|181436 PRK08462, PRK08462, biotin carboxylase; Validated. Length = 445 Score = 562 bits (1451), Expect = e-161 Identities = 234/443 (52%), Positives = 310/443 (69%), Gaps = 4/443 (0%) Query: 2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYL 61 I +ILIANRGEIALR +R +E+G +A++STAD A++++ AD +CIG S +SYL Sbjct: 4 IKRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYL 63 Query: 62 NIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKK 121 NI I++A E+ ADAI PGYGFLSEN F EI H+IKFIGPS E + +M DK AK+ Sbjct: 64 NIPAIISAAEIFEADAIFPGYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKE 123 Query: 122 TAQQLGIPVVPGS-GEVYP-HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAI 179 ++ G+PV+PGS G + A IAKEIG+PV++KA+AGGGGRGMR+ E+DL Sbjct: 124 VMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLY 183 Query: 180 DQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEE 239 A SEAL+AFG+ +Y+EK++ NPRHIEVQI GD GN IH GERDCS+QRR+QK+ EE Sbjct: 184 LAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSLQRRHQKLIEE 243 Query: 240 AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQ-FYFIEMNTRLQVEHPVTE 298 + + V+ + R + ET +KA K I Y GAGT EFL ++ FYF+EMNTRLQVEH V+E Sbjct: 244 SPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSNLDFYFMEMNTRLQVEHTVSE 303 Query: 299 AITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPG 358 ++G+DL+ I +A L Q+ I GHAIECRI AEDP+ F P+PG+IT + APG Sbjct: 304 MVSGLDLIEWMIKIAEGEELP-SQESIKLKGHAIECRITAEDPKKFYPSPGKITKWIAPG 362 Query: 359 GLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLF 418 G +RMDS +Y GY VP YYDS+I KLIV G++R + ++ RAL E ++GIKTTIP Sbjct: 363 GRNVRMDSHAYAGYVVPPYYDSMIGKLIVWGEDRNRAIAKMKRALKEFKVEGIKTTIPFH 422 Query: 419 QKLIKNEDIIEGNYDIHWLENKY 441 ++++N D I YD +LE + Sbjct: 423 LEMMENADFINNKYDTKYLEEHF 445 >gnl|CDD|180865 PRK07178, PRK07178, pyruvate carboxylase subunit A; Validated. Length = 472 Score = 538 bits (1389), Expect = e-154 Identities = 225/443 (50%), Positives = 313/443 (70%), Gaps = 5/443 (1%) Query: 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60 MI KILIANRGEIA+RI+RAC E+GI +VA++S AD A+HV+ ADE+ IG Y Sbjct: 1 MIKKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGA-DPLAGY 59 Query: 61 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120 LN +++V TG DA+HPGYGFLSENA+ AEI + IKFIGPS+E I+ MGDK A+ Sbjct: 60 LNPRRLVNLAVETGCDALHPGYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEAR 119 Query: 121 KTAQQLGIPVVPGS-GEVYP-HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEA 178 + + G+PV PGS G + A+ A+ IG+PV++KA++GGGGRG+R S +L + Sbjct: 120 RAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKATSGGGGRGIRRCNSREELEQN 179 Query: 179 IDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238 + SEA AFG+ V++EK + NP+HIEVQI D GN +H ERDCS+QRRNQK+ E Sbjct: 180 FPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDCSIQRRNQKLIE 239 Query: 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVT 297 A SP ++ + R IG+ V+A K + Y AGT+EFL + +G+ YF+EMNTR+QVEH +T Sbjct: 240 IAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGEVYFMEMNTRVQVEHTIT 299 Query: 298 EAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPEN-FIPNPGEITYFHA 356 E ITGID+V EQI +AS LS +Q+DI G A++ RINAEDP+N F+P+ G+IT ++A Sbjct: 300 EEITGIDIVREQIRIASGLPLSYKQEDIQHRGFALQFRINAEDPKNDFLPSFGKITRYYA 359 Query: 357 PGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIP 416 PGG G+R D+A Y GYT+P YYDS+ AKLIV +E + R RAL+++ + G+KTTIP Sbjct: 360 PGGPGVRTDTAIYTGYTIPPYYDSMCAKLIVWALTWEEALDRGRRALDDMRVQGVKTTIP 419 Query: 417 LFQKLIKNEDIIEGNYDIHWLEN 439 +Q++++N + G ++ ++E+ Sbjct: 420 YYQEILRNPEFRSGQFNTSFVES 442 >gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis. Length = 1143 Score = 492 bits (1267), Expect = e-139 Identities = 213/450 (47%), Positives = 297/450 (66%), Gaps = 16/450 (3%) Query: 4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSK---DSY 60 KIL+ANRGEIA+R+ RA ELGI TVA++S D ++H + ADES +G ++Y Sbjct: 1 KILVANRGEIAIRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAY 60 Query: 61 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120 L+I +I+ ++ G DAIHPGYGFLSEN++FA+ I FIGP +E + +GDK+ A+ Sbjct: 61 LSIDEIIRVAKLNGVDAIHPGYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAAR 120 Query: 121 KTAQQLGIPVVPGSGEVYPHT---AMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSE 177 A + G+PVVPG+ + P T + A IG+PV++KAS GGGGRGMR+ SE D+++ Sbjct: 121 NLAIKAGVPVVPGT-DGPPETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVAD 179 Query: 178 AIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIW 237 A +A+SEA AAFGND VY+EK +E PRHIEVQ+ GD GN +H ERDCSVQRR+QK+ Sbjct: 180 AFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVV 239 Query: 238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY-ENGQFYFIEMNTRLQVEHPV 296 E A +P +S + R EI E VK K ++Y AGT+EFL +G+FYFIE+N R+QVEH V Sbjct: 240 EVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDGKFYFIEVNPRIQVEHTV 299 Query: 297 TEAITGIDLVHEQIYVASENRLSV------QQKDITFSGHAIECRINAEDPE-NFIPNPG 349 TE ITGID+V QI++A L Q+DI +G+AI+CR+ EDP NF P+ G Sbjct: 300 TEEITGIDIVQAQIHIADGASLPTPQLGVPNQEDIRTNGYAIQCRVTTEDPANNFQPDTG 359 Query: 350 EITYFHAPGGLGIRMDSA-SYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIII 408 I + + GG GIR+D SY G + YYDSL+ K+ +E +++RAL E I Sbjct: 360 RIEAYRSAGGFGIRLDGGNSYAGAIITPYYDSLLVKVSAWASTPEEAAAKMDRALREFRI 419 Query: 409 DGIKTTIPLFQKLIKNEDIIEGNYDIHWLE 438 G+KT IP + ++ + ++G+YD +++ Sbjct: 420 RGVKTNIPFLENVLGHPKFLDGSYDTRFID 449 >gnl|CDD|162983 TIGR02712, urea_carbox, urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. Length = 1201 Score = 484 bits (1249), Expect = e-137 Identities = 192/428 (44%), Positives = 286/428 (66%), Gaps = 8/428 (1%) Query: 4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNI 63 +LIANRGEIA+RI+R + +GI +VAV+S AD+ + HV ADE+VC+G + +SYL+I Sbjct: 3 TVLIANRGEIAVRIIRTLRRMGIRSVAVYSDADAASQHVLDADEAVCLGGAPAAESYLDI 62 Query: 64 QQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTA 123 +I+AA + TGA AIHPGYGFLSENA FAE E I F+GP+ E I+ G K TA++ A Sbjct: 63 DKILAAAKKTGAQAIHPGYGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELA 122 Query: 124 QQLGIPVVPGSGEVYP-HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQA 182 + G+P++PG+G + A+ AKEIG+PV++K++AGGGG GM+ S +L+EA + Sbjct: 123 EAAGVPLLPGTGLLSSLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETV 182 Query: 183 RSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHS 242 + + FG+ V++E+++EN RH+EVQIFGDG G + GERDCS+QRRNQK+ EE + Sbjct: 183 KRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEETPA 242 Query: 243 PVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY--ENGQFYFIEMNTRLQVEHPVTEAI 300 P + + R + + + ++YR AGT+EF+Y +FYF+E+NTRLQVEHPVTE + Sbjct: 243 PNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVEHPVTEMV 302 Query: 301 TGIDLVHEQIYVASENRLSVQQ--KDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAP 357 TG+DLV I +A+ +T G AIE R+ AE+P +NF P+PG +T P Sbjct: 303 TGLDLVEWMIRIAAGELPDFASLNISLTPRGAAIEARVYAENPAKNFQPSPGLLTDVQFP 362 Query: 358 GGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPL 417 +R+D+ G V YD ++AK+IVHG +R++ +++L++AL E + GI+T + Sbjct: 363 D--DVRVDTWVETGTEVSPEYDPMLAKIIVHGSDREDAILKLHQALAETRVYGIETNLDY 420 Query: 418 FQKLIKNE 425 + ++ +E Sbjct: 421 LRSILSSE 428 >gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated. Length = 478 Score = 473 bits (1219), Expect = e-134 Identities = 223/445 (50%), Positives = 303/445 (68%), Gaps = 6/445 (1%) Query: 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60 MI KILIANRGEIA+R++RAC++L I +VA+++ D +HV++ADE+ IG K Y Sbjct: 1 MIHKILIANRGEIAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPIK-GY 59 Query: 61 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120 L++++IV + GADAIHPGYGFLSEN +FA+ +ED I FIGP SE I+ MG+K A+ Sbjct: 60 LDVKRIVEIAKACGADAIHPGYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIAR 119 Query: 121 KTAQQLGIPVVPGSGEVYPHTAMPI---AKEIGFPVLVKASAGGGGRGMRIAYSENDLSE 177 ++ GIP+VPG+ ++ + I A++IG+PV++KAS GGGGRG+R+ + E DL Sbjct: 120 YLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKASGGGGGRGIRVVHKEEDLEN 179 Query: 178 AIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIW 237 A + + EALA F ND V++EKY+ NPRHIE QI GD GN IH ERDCS+QRR+QK+ Sbjct: 180 AFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVI 239 Query: 238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY-ENGQFYFIEMNTRLQVEHPV 296 E A P IS R +G T V A K + Y AGTIEFL + +FYF+EMNTR+QVEH V Sbjct: 240 EIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNTRIQVEHGV 299 Query: 297 TEAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFH 355 TE ITGIDL+ QI +A+ L ++Q DI G AIE RI AE+ +NFIP+PG+IT ++ Sbjct: 300 TEEITGIDLIVRQIRIAAGEILDLEQSDIKPRGFAIEARITAENVWKNFIPSPGKITEYY 359 Query: 356 APGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTI 415 G +R+DS Y+ YT+P YYDS++AKLIV + + +L RAL E +IDGI+TTI Sbjct: 360 PALGPSVRVDSHIYKDYTIPPYYDSMLAKLIVKATSYDLAVNKLERALKEFVIDGIRTTI 419 Query: 416 PLFQKLIKNEDIIEGNYDIHWLENK 440 P + K + G +D ++E Sbjct: 420 PFLIAITKTREFRRGYFDTSYIETH 444 >gnl|CDD|129111 smart00878, Biotin_carb_C, Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain. Length = 107 Score = 174 bits (443), Expect = 5e-44 Identities = 59/107 (55%), Positives = 78/107 (72%), Gaps = 1/107 (0%) Query: 333 ECRINAEDPE-NFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKN 391 ECRINAEDP F+P+PG IT + PGG G+R+DS Y+GY VP YYDS+IAKLIVHG+ Sbjct: 1 ECRINAEDPANGFLPSPGRITRYRFPGGPGVRVDSGVYEGYEVPPYYDSMIAKLIVHGET 60 Query: 392 RKECMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLE 438 R+E + RL RAL+E I+G+KT IP + L+++ D G+ D +LE Sbjct: 61 REEAIARLRRALDEFRIEGVKTNIPFLRALLRHPDFRAGDVDTGFLE 107 >gnl|CDD|183765 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed. Length = 1068 Score = 83.5 bits (207), Expect = 1e-16 Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 38/233 (16%) Query: 90 KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEI 149 A+ LE+ + +G S + I + D+ + +LG+P VPG A AK I Sbjct: 645 NLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDEEEAFAFAKRI 704 Query: 150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEV 209 G+PVL++ S GG+GM + Y E L + + S + I+++++ + EV Sbjct: 705 GYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENAS------QLYPILIDQFIDG-KEYEV 757 Query: 210 QIFGDGMGNAI-----HFGERDCSVQRRNQKIWEEA--HS---------PVISAQDRTEI 253 DG I H E+A HS +S + + +I Sbjct: 758 DAISDGEDVTIPGIIEHI---------------EQAGVHSGDSIAVLPPQSLSEEQQEKI 802 Query: 254 GETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLV 306 + +K KK+ +RG I+F+ N + Y +E+N R P TG+ L Sbjct: 803 RDYAIKIAKKLGFRGIMNIQFVLANDEIYVLEVNPRASRTVPFVSKATGVPLA 855 Score = 65.4 bits (160), Expect = 3e-11 Identities = 58/243 (23%), Positives = 99/243 (40%), Gaps = 51/243 (20%) Query: 76 DAIHPGYGFLSENA-----KFAE--ILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGI 128 DA+ G + A K E ILE + ++ +G + E I+ D+ + ++LG Sbjct: 84 DALLATLG--GQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGE 141 Query: 129 PVVPGSGEVYP-HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEAL 187 PV P S V A+ A++IGFP++V+ + GG G IA + +L + Sbjct: 142 PV-PESEIVTSVEEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEEL---EQLFKQGLQ 197 Query: 188 AAFGNDAVYIEKYLENPRHIEVQIFGDGMGN-------------AIHFGERDCSVQRRNQ 234 A+ + +E+ + + IE ++ D GN IH G D V Sbjct: 198 ASPIHQ-CLLEESIAGWKEIEYEVMRDRNGNCITVCNMENIDPVGIHTG--DSIV----- 249 Query: 235 KIWEEAHSPVISAQDRT-----EIGETCVKAMKKIDYRGAGTIEFL--YENGQFYFIEMN 287 V +Q T + +K + + G I+F ++ Q+Y IE+N Sbjct: 250 ---------VAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVN 300 Query: 288 TRL 290 R+ Sbjct: 301 PRV 303 >gnl|CDD|162321 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. Length = 1050 Score = 80.8 bits (200), Expect = 6e-16 Identities = 63/229 (27%), Positives = 100/229 (43%), Gaps = 27/229 (11%) Query: 90 KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEI 149 A+ LE+ + +G S E I D+ + +LGIP A+ A EI Sbjct: 644 NLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSVEEAVEFASEI 703 Query: 150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEV 209 G+PVLV+ S GGR M I Y+E +L ++ EA+ V I+KYLE+ ++V Sbjct: 704 GYPVLVRPSYVLGGRAMEIVYNEEELRRYLE----EAVEVSPEHPVLIDKYLEDAVEVDV 759 Query: 210 QIFGDG-----------MGNA-IHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETC 257 DG + A +H G+ C + +SA+ I + Sbjct: 760 DAVSDGEEVLIPGIMEHIEEAGVHSGDSTCVLP-----------PQTLSAEIVDRIKDIV 808 Query: 258 VKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLV 306 K K+++ +G I+F ++G+ Y IE+N R P TG+ L+ Sbjct: 809 RKIAKELNVKGLMNIQFAVKDGEVYVIEVNPRASRTVPFVSKATGVPLI 857 Score = 63.5 bits (155), Expect = 1e-10 Identities = 80/321 (24%), Positives = 147/321 (45%), Gaps = 56/321 (17%) Query: 2 ISKILIANRGEIAL-----------RILRACKELGIPTVAVHSTADSGAMHVRLADESVC 50 I KIL+ G I + + +A KE G + V+S + +AD+ V Sbjct: 6 IKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADK-VY 64 Query: 51 IGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG-----FLSENAKFAEILEDHHIKFIGP 105 I P + + +++I+ E DAI P +G L+ + + +LE + ++ +G Sbjct: 65 IEPLTPE----AVEKII---EKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGT 117 Query: 106 SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYP-HTAMPIAKEIGFPVLVKASAGGGGR 164 E IK D+ ++ +++G PV P S + A+ AKEIG+PV+V+ + GG Sbjct: 118 PVEAIKKAEDRELFREAMKEIGEPV-PESEIAHSVEEALAAAKEIGYPVIVRPAFTLGGT 176 Query: 165 GMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAI---- 220 G IAY+ +L E ++ AL+A + V +EK L + IE ++ D N I Sbjct: 177 GGGIAYNREELKEIAER----ALSASPINQVLVEKSLAGWKEIEYEVMRDSNDNCITVCN 232 Query: 221 ---------HFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGT 271 H G+ S+ A S ++ ++ + + +K ++++ G Sbjct: 233 MENFDPMGVHTGD---SIV--------VAPSQTLTDKEYQMLRDASIKIIRELGIEGGCN 281 Query: 272 IEFLY--ENGQFYFIEMNTRL 290 ++F ++G++Y IE+N R+ Sbjct: 282 VQFALNPDSGRYYVIEVNPRV 302 >gnl|CDD|162248 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model. Length = 315 Score = 74.6 bits (184), Expect = 5e-14 Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 22/224 (9%) Query: 77 AIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE 136 +H YG E+ +LE I + G + DK+ K + LG+P Sbjct: 70 VLHGRYG---EDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVL 126 Query: 137 VYPHTAMPIAK------EIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAF 190 + + +GFPV+VK + G G+ SE +L A+D+A + Sbjct: 127 TQNRASADELECEQVAEPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFE-----Y 181 Query: 191 GNDAVYIEKYLENPRHIEVQIFGDGMGN-AIHFGERDCSVQRRNQKIWEEAHSPVISAQD 249 + V +E++++ R +EV I G+ I K + + VI A Sbjct: 182 DEE-VLVEQFIK-GRELEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAPL 239 Query: 250 RTE----IGETCVKAMKKIDYRGAGTIEFLY-ENGQFYFIEMNT 288 E I E +KA K + RG ++F E G+ Y E+NT Sbjct: 240 DEELEEKIKELALKAYKALGCRGLARVDFFLDEEGEIYLNEINT 283 >gnl|CDD|148851 pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF). Length = 201 Score = 67.7 bits (166), Expect = 6e-12 Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 18/177 (10%) Query: 123 AQQLGIPVVP----GSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEA 178 + GIPV P + T + +++G+PV VK + G G+ S +L A Sbjct: 2 LKAAGIPVAPFIVLTREDWVLATIEKVEEKLGYPVFVKPANLGSSVGISKVTSREELQSA 61 Query: 179 IDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGER--DCSVQRRNQK- 235 I++A + N V IE+ +E R IE + G+ GE K Sbjct: 62 IEEAFQ-----YDNK-VLIEEAIEG-REIECAVLGNEDLEVSPVGEIRLSGGFYDYEAKY 114 Query: 236 IWEEAHSPV---ISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY-ENGQFYFIEMNT 288 I A V + + +I E +KA K + RG I+F E+G+ Y E+NT Sbjct: 115 ILSSAQIIVPADLPEEVEEQIQELALKAYKALGCRGLARIDFFLTEDGEIYLNEVNT 171 >gnl|CDD|179998 PRK05294, carB, carbamoyl phosphate synthase large subunit; Reviewed. Length = 1066 Score = 66.3 bits (163), Expect = 1e-11 Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 6/127 (4%) Query: 90 KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVY-PHTAMPIAKE 148 K A+ LE + +G S + I + D+ K ++LGIP P +G A+ +A+E Sbjct: 644 KLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQ-PPNGTATSVEEALEVAEE 702 Query: 149 IGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE 208 IG+PVLV+ S GGR M I Y E +L + EA+ + V I+K+LE ++ Sbjct: 703 IGYPVLVRPSYVLGGRAMEIVYDEEELERYM----REAVKVSPDHPVLIDKFLEGAIEVD 758 Query: 209 VQIFGDG 215 V DG Sbjct: 759 VDAICDG 765 Score = 53.6 bits (130), Expect = 1e-07 Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 10/130 (7%) Query: 94 ILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHT---AMPIAKEIG 150 +LE + ++ IG E I D+ K+ +++G+P VP SG H+ A+ +A+EIG Sbjct: 107 VLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLP-VPRSGIA--HSMEEALEVAEEIG 163 Query: 151 FPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQ 210 +PV+++ S GG G IAY+E +L E + L V IE+ L + E + Sbjct: 164 YPVIIRPSFTLGGTGGGIAYNEEELEEIV----ERGLDLSPVTEVLIEESLLGWKEYEYE 219 Query: 211 IFGDGMGNAI 220 + D N I Sbjct: 220 VMRDKNDNCI 229 >gnl|CDD|178336 PLN02735, PLN02735, carbamoyl-phosphate synthase. Length = 1102 Score = 65.2 bits (159), Expect = 3e-11 Identities = 55/217 (25%), Positives = 89/217 (41%), Gaps = 30/217 (13%) Query: 99 HIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKAS 158 ++K G S + I D+ +L I G A+ IAK IG+PV+V+ S Sbjct: 686 NVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARSEADALAIAKRIGYPVVVRPS 745 Query: 159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGN 218 GGR M I YS++ L ++ A+ V ++KYL + I+V D GN Sbjct: 746 YVLGGRAMEIVYSDDKLKTYLET----AVEVDPERPVLVDKYLSDATEIDVDALADSEGN 801 Query: 219 -------------AIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKID 265 +H G+ CS+ + I + I + K K+++ Sbjct: 802 VVIGGIMEHIEQAGVHSGDSACSLPTQT-----------IPSSCLATIRDWTTKLAKRLN 850 Query: 266 YRGAGTIEF-LYENGQFYFIEMNTRLQVEHP-VTEAI 300 G ++ + +G+ Y IE N R P V++AI Sbjct: 851 VCGLMNCQYAITPSGEVYIIEANPRASRTVPFVSKAI 887 Score = 42.5 bits (100), Expect = 2e-04 Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 12/146 (8%) Query: 76 DAIHPGYG---FLSENAKFAE--ILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPV 130 DA+ P G L+ AE ILE + ++ IG + IK D+ K+ +++G+ Sbjct: 100 DALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKT 159 Query: 131 VP-GSGEVYPHTAMPIAKEIG-FPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALA 188 P G IA++IG FP++++ + GG G IAY++ + E I +A LA Sbjct: 160 PPSGIATTLDE-CFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEF-ETICKA---GLA 214 Query: 189 AFGNDAVYIEKYLENPRHIEVQIFGD 214 A V +EK L + E+++ D Sbjct: 215 ASITSQVLVEKSLLGWKEYELEVMRD 240 >gnl|CDD|162228 TIGR01161, purK, phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Length = 352 Score = 63.1 bits (154), Expect = 1e-10 Identities = 63/271 (23%), Positives = 116/271 (42%), Gaps = 26/271 (9%) Query: 11 GEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAAC 70 G++ + A + LGI + A+S A V++AD V + P + I+++ +C Sbjct: 8 GQLGRMLALAARPLGIKVHVLDPDANSPA--VQVADHVV-LAPFFDPAA---IRELAESC 61 Query: 71 EVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPV 130 +V + H L + LE +K PS + + I+ D++T K+ Q+LG+PV Sbjct: 62 DVITFEFEHVDVEALEK-------LEARGVKLF-PSPDALAIIQDRLTQKQFLQKLGLPV 113 Query: 131 VPGSGEVYPHTAMPIAKEIGFPVLVKASAGG-GGRGMRIAYSENDLSEAIDQARSEALAA 189 P +E+GFPV++KA GG GRG +E DL +A Sbjct: 114 PPFLVIKDEEELDAALQELGFPVVLKARTGGYDGRGQYRIRNEADLPQAA--------KE 165 Query: 190 FGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQD 249 G+ +E+++ R + V + G F ++ + + A + + Sbjct: 166 LGDRECIVEEFVPFERELSVIVARSADG-ETAFYPVVENIHQDGILRYVVAPAA-VPDAI 223 Query: 250 RTEIGETCVKAMKKIDYRGAGTIE-FLYENG 279 + E + M+++ Y G +E F+ +G Sbjct: 224 QARAEEIARRLMEELGYVGVLAVEMFVLPDG 254 >gnl|CDD|179288 PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed. Length = 304 Score = 61.3 bits (150), Expect = 5e-10 Identities = 41/197 (20%), Positives = 77/197 (39%), Gaps = 49/197 (24%) Query: 115 DKITAKKTAQQLGIPVVPGSGEVYPHTAMP-IAKEIGFPVLVKASAGGGGRGMRIAYSEN 173 DK+ K Q G+P P + + ++G P++VK + G G+ E+ Sbjct: 98 DKLRTKLVWQAAGLPT-PPWIVLTREEDLLAAIDKLGLPLVVKPAREGSSVGVSKVKEED 156 Query: 174 DLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGM----------------- 216 +L A++ A + ++ V +EKY++ R + V + G Sbjct: 157 ELQAALELA-----FKYDDE-VLVEKYIKG-RELTVAVLGGKALPVIEIVPAGEFYDYEA 209 Query: 217 ----GNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTI 272 G + C + A+ E+ E +KA + + RG G + Sbjct: 210 KYLAGGTQYI----CPAG--------------LPAEIEAELQELALKAYRALGCRGWGRV 251 Query: 273 EFLY-ENGQFYFIEMNT 288 +F+ E+G+ Y +E+NT Sbjct: 252 DFMLDEDGKPYLLEVNT 268 >gnl|CDD|183732 PRK12767, PRK12767, carbamoyl phosphate synthase-like protein; Provisional. Length = 326 Score = 61.1 bits (149), Expect = 5e-10 Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 34/254 (13%) Query: 44 LADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY----GFLSENAKFAEILEDHH 99 AD+ + P + +Y I +++ C+ D + P L++N E+ Sbjct: 42 FADKFY-VVPKVTDPNY--IDRLLDICKKEKIDLLIPLIDPELPLLAQNRD---RFEEIG 95 Query: 100 IKFIGPSSEHIKIMGDKITAKKTAQQLGIPVV----PGSGEVYPHTAMPIAKEIGFPVLV 155 +K + S E I+I DK + ++ GIP P S E A E+ FP+ V Sbjct: 96 VKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESLED--FKAALAKGELQFPLFV 153 Query: 156 KASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDG 215 K G G+ + +L ++ + I++++E V + D Sbjct: 154 KPRDGSASIGVFKVNDKEELEFLLEY----------VPNLIIQEFIEGQE-YTVDVLCDL 202 Query: 216 MGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFL 275 G I V R+ ++ S ++ +D E+ + + + + RG I+ Sbjct: 203 NGEVIS------IVPRKRIEVRAGETSKGVTVKDP-ELFKLAERLAEALGARGPLNIQCF 255 Query: 276 YENGQFYFIEMNTR 289 +G+ Y E+N R Sbjct: 256 VTDGEPYLFEINPR 269 >gnl|CDD|179356 PRK01966, ddl, D-alanyl-alanine synthetase A; Reviewed. Length = 333 Score = 60.1 bits (147), Expect = 1e-09 Identities = 54/230 (23%), Positives = 88/230 (38%), Gaps = 38/230 (16%) Query: 78 IHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPG---- 133 +H G E+ +LE I ++G + DKI K+ GIPV P Sbjct: 89 LHGPPG---EDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLT 145 Query: 134 SGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGND 193 G+ + I ++G PV VK + G G+ +E +L+ A+D A Sbjct: 146 RGDWEEASLAEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEYD------R 199 Query: 194 AVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSV--QRRNQKIW-----------EEA 240 V +E+ + R IE + G + SV + + E Sbjct: 200 KVLVEQGI-KGREIECAVLG---------NDPKASVPGEIVKPDDFYDYEAKYLDGSAEL 249 Query: 241 HSPV-ISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY-ENGQFYFIEMNT 288 P +S + +I E +KA K + G ++F E+G+ Y E+NT Sbjct: 250 IIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEIYLNEINT 299 >gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional. Length = 809 Score = 52.1 bits (125), Expect = 3e-07 Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 33/209 (15%) Query: 102 FIGPSSEHIKIMGDKITAKKTAQQLGIPVVP------GSGEVYPHTAMP-IAKEIGFPVL 154 + GPS I DK+ K+ A +G+PVVP + P + I + FP+ Sbjct: 555 YTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGWKREPELCLAHIVEAFSFPMF 614 Query: 155 VKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGD 214 VK + G G+ ++ +L + I SEA + V++E+ R IEV GD Sbjct: 615 VKTAHLGSSIGVFEVHNVEELRDKI----SEAFLY--DTDVFVEESRLGSREIEVSCLGD 668 Query: 215 GMGNAIHFGERDCSVQRRNQK---IWEEAH--SPVISAQ-----DRTEIGETCVKAMKKI 264 G + G +RR ++E + S SAQ D ++ + V + + Sbjct: 669 GSSAYVIAGPH----ERRGSGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAER 724 Query: 265 DYR---GAGTIE---FLYENGQFYFIEMN 287 YR G G+ FL E G F+ EMN Sbjct: 725 IYRLLQGKGSCRIDFFLDEEGNFWLSEMN 753 >gnl|CDD|180352 PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed. Length = 372 Score = 51.7 bits (125), Expect = 4e-07 Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 36/189 (19%) Query: 20 ACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH 79 A LG + + DS A ++ADE + D ++++ C+V + Sbjct: 20 AAAPLGYKVIVLDPDPDSPA--AQVADEVIVADY----DDVAALRELAEQCDVITYE--- 70 Query: 80 PGYGFLSEN--AKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVP----G 133 F EN A+ + L GP + + I D++T K+ +LGIPV P Sbjct: 71 ----F--ENVPAEALDALAARVPVPPGPDA--LAIAQDRLTEKQFLDKLGIPVAPFAVVD 122 Query: 134 SGEVYPHTAMPIAKEIGFPVLVKASAGG-GGRGMRIAYSENDLSEAIDQARSEALAAFGN 192 S E ++G P ++K GG G+G + S DL A A G+ Sbjct: 123 SAE----DLEAALADLGLPAVLKTRRGGYDGKGQWVIRSAEDL--------EAAWALLGS 170 Query: 193 DAVYIEKYL 201 +E+++ Sbjct: 171 VPCILEEFV 179 >gnl|CDD|167327 PRK02186, PRK02186, argininosuccinate lyase; Provisional. Length = 887 Score = 50.2 bits (120), Expect = 9e-07 Identities = 54/243 (22%), Positives = 89/243 (36%), Gaps = 40/243 (16%) Query: 70 CEVTGADAIHPGYGFLSENAKFAEILE--DHHIK----------FIGPSSEHIKIMGDKI 117 + + D IH F+S A I+ ++ I+ ++E I+ DK Sbjct: 53 ADTSDPDRIH---RFVSSLDGVAGIMSSSEYFIEVASEVARRLGLPAANTEAIRTCRDKK 109 Query: 118 TAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSE 177 +T + GI V A+ + +PV+VK G G G+R+ S + + Sbjct: 110 RLARTLRDHGIDVPRTHALALRAVALDALDGLTYPVVVKPRMGSGSVGVRLCASVAEAA- 168 Query: 178 AIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAI------HFGERDCSVQR 231 A AL G A ++ Y+E + V+ G+ + H G V Sbjct: 169 ----AHCAALRRAGTRAALVQAYVEGDEY-SVETLTVARGHQVLGITRKHLGPPPHFV-- 221 Query: 232 RNQKIWEEAH---SPVISAQDRTEIGETCVKAMKKIDYR-GAGTIEFLYENGQFYFIEMN 287 E H +P+ + Q R I T ++A+ + Y G E IE+N Sbjct: 222 ------EIGHDFPAPLSAPQ-RERIVRTVLRALDAVGYAFGPAHTELRVRGDTVVIIEIN 274 Query: 288 TRL 290 RL Sbjct: 275 PRL 277 >gnl|CDD|130212 TIGR01142, purT, phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639). Length = 380 Score = 48.2 bits (115), Expect = 5e-06 Identities = 44/204 (21%), Positives = 88/204 (43%), Gaps = 23/204 (11%) Query: 4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNI 63 ++L+ GE+ + + LG+ +AV A++ AM V A S I + L+ Sbjct: 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQV--AHRSYVI-------NMLDG 51 Query: 64 QQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKT- 122 + A E D I P ++ +A F E + + P++ K+ ++ ++ Sbjct: 52 DALRAVIEREKPDYIVPEIEAIATDALFELEKEGYFVV---PNARATKLTMNREGIRRLA 108 Query: 123 AQQLGIPVVP----GSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEA 178 A++LG+P S + ++IG+P +VK G+G + D+ +A Sbjct: 109 AEELGLPTSRYMFADSLDEL----REAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKA 164 Query: 179 IDQARSEALAAFGNDAVYIEKYLE 202 + A+ A G V +E++++ Sbjct: 165 WEYAQEGARG--GAGRVIVEEFID 186 >gnl|CDD|173033 PRK14569, PRK14569, D-alanyl-alanine synthetase A; Provisional. Length = 296 Score = 47.4 bits (112), Expect = 9e-06 Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 24/229 (10%) Query: 87 ENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIA 146 EN + + +LE IK S + I DK+ +K+ +P + + Sbjct: 70 ENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAK---FLTDKLVAE 126 Query: 147 KEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRH 206 EI FPV VK S+GG S +L A ++A V IE+++ + Sbjct: 127 DEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYG-------EVMIEQWVTG-KE 178 Query: 207 IEVQIFGDGMGNAIHFGER----DCSVQRRNQKIWEEAHSPV-ISAQDRTEIGETCVKAM 261 I V I D + +++ + D + + I+ HSP + Q E+ + KA Sbjct: 179 ITVAIVNDEVYSSVWIEPQNEFYDYESKYSGKSIY---HSPSGLCEQKELEVRQLAKKAY 235 Query: 262 KKIDYRGAGTIEFLYEN-GQFYFIEMNTRLQVEH----PVTEAITGIDL 305 + G ++F+Y++ G FY +E+N+ + P + A G+D Sbjct: 236 DLLGCSGHARVDFIYDDRGNFYIMEINSSPGMTDNSLSPKSAAAEGVDF 284 >gnl|CDD|184454 PRK14016, PRK14016, cyanophycin synthetase; Provisional. Length = 727 Score = 45.5 bits (109), Expect = 2e-05 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 112 IMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRI-AY 170 I DK K+ G+PV G A A+EIG+PV+VK G GRG+ + Sbjct: 211 IACDKELTKRLLAAAGVPVPEGRVVTSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNIT 270 Query: 171 SENDLSEAIDQARSEALAAFGNDAVYIEKYLE 202 + ++ A A E + V +E+Y+ Sbjct: 271 TREEIEAAYAVASKE------SSDVIVERYIP 296 >gnl|CDD|177899 PLN02257, PLN02257, phosphoribosylamine--glycine ligase. Length = 434 Score = 44.0 bits (104), Expect = 8e-05 Identities = 43/156 (27%), Positives = 63/156 (40%), Gaps = 32/156 (20%) Query: 104 GPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGG 163 GPS+E + G K K + IP P A KE G P++VKA G Sbjct: 91 GPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDPAAAKKYIKEQGAPIVVKADGLAAG 150 Query: 164 RGMRIAYSENDLSEAIDQARSEALAAFGN--DAVYIEKYLENPRHIEVQIFG--DGMGNA 219 +G+ +A + + EA+D + AFG+ V +E++L+ E F DG NA Sbjct: 151 KGVVVAMTLEEAYEAVDSMLVK--GAFGSAGSEVVVEEFLDGE---EASFFALVDG-ENA 204 Query: 220 IHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGE 255 I P+ SAQD +G+ Sbjct: 205 I----------------------PLESAQDHKRVGD 218 >gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues. Length = 280 Score = 43.5 bits (103), Expect = 1e-04 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 6/132 (4%) Query: 92 AEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVY-PHTAMPIAKEIG 150 A +LE + I S I+ GDKI + G+P P + + A+ +A+ +G Sbjct: 65 ARLLEALGVPVINSSHV-IEACGDKIFTYLKLAKAGVPT-PRTYLAFDREAALKLAEALG 122 Query: 151 FPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENP-RHIEV 209 +PV++K G GR + + +++L ++ E L + YI++Y+ P R I V Sbjct: 123 YPVVLKPVIGSWGRLVALIRDKDELESLLEH--KEVLGGSQHKLFYIQEYINKPGRDIRV 180 Query: 210 QIFGDGMGNAIH 221 + GD AI+ Sbjct: 181 FVIGDEAIAAIY 192 >gnl|CDD|173034 PRK14570, PRK14570, D-alanyl-alanine synthetase A; Provisional. Length = 364 Score = 42.1 bits (99), Expect = 3e-04 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 23/158 (14%) Query: 145 IAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENP 204 I + +G+PV+VK + G G+ +AY+EN + + I++A L V IEK++E Sbjct: 166 IKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKYDL------TVVIEKFIE-A 218 Query: 205 RHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPV--------ISAQDRT----E 252 R IE + G+ GE VQ ++ +S + I A T + Sbjct: 219 REIECSVIGNEQIKIFTPGE--IVVQDFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHLLD 276 Query: 253 IGETCVKAMKKIDYRGAGTIEFLYE--NGQFYFIEMNT 288 I E K ++ RG I+FL E G Y E+NT Sbjct: 277 IKEYAFLTYKNLELRGMARIDFLIEKDTGLIYLNEINT 314 >gnl|CDD|184328 PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional. Length = 379 Score = 41.7 bits (98), Expect = 4e-04 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%) Query: 92 AEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF 151 A+IL + K GP+ + +I G K+ AKK ++ IP A+ + Sbjct: 44 ADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCEL 103 Query: 152 PVLVKASAGGGGRGMRIAYSENDLSEAIDQA-RSEALAAFGNDAVYIEKYLE 202 PV+VK G+G+ IA + AI+ E V E +LE Sbjct: 104 PVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEE-----EGTVVFETFLE 150 >gnl|CDD|184751 PRK14571, PRK14571, D-alanyl-alanine synthetase A; Provisional. Length = 299 Score = 41.3 bits (97), Expect = 4e-04 Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 19/214 (8%) Query: 82 YGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHT 141 +G E+ IL+ I++ G + I DK+ + + G +P E+ Sbjct: 62 HGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK--GTVEIPDFVEIKEFM 119 Query: 142 AMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYL 201 +G+P +VK G G+ I S+ + A+ E L +G +V +++Y+ Sbjct: 120 ---KTSPLGYPCVVKPRREGSSIGVFICESDEEFQHAL----KEDLPRYG--SVIVQEYI 170 Query: 202 ENPRHIEVQIFGDGMGNAI------HFGERDCSVQRRNQKIWEEAHSPV-ISAQDRTEIG 254 R + V I G + R + K E P ++ ++ + Sbjct: 171 PG-REMTVSILETEKGFEVLPILELRPKRRFYDYVAKYTKGETEFILPAPLNPEEERLVK 229 Query: 255 ETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNT 288 ET +KA + RG G ++ ++ +G+FYF+E+NT Sbjct: 230 ETALKAFVEAGCRGFGRVDGIFSDGRFYFLEINT 263 >gnl|CDD|162681 TIGR02068, cya_phycin_syn, cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions. Length = 864 Score = 40.9 bits (96), Expect = 6e-04 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 8/106 (7%) Query: 112 IMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYS 171 I DK K+ G+PV G+ A A+++G+PV++K G GRG+ I Sbjct: 210 IACDKDLTKEILSDAGVPVPEGTVVQSAEDAWEAAQDLGYPVVIKPYDGNHGRGVTINIL 269 Query: 172 ENDLSE-AIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGM 216 D E A + A E+ V +E+++ R + + G + Sbjct: 270 TRDEIESAYEAAVEES------SGVIVERFITG-RDHRLLVVGGKV 308 >gnl|CDD|162082 TIGR00877, purD, phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. Length = 423 Score = 40.8 bits (96), Expect = 8e-04 Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 7/127 (5%) Query: 92 AEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVY--PHTAMPIAKEI 149 + LE+ I GP+ E ++ G K AK ++ GIP EV+ P A+ +E Sbjct: 81 VDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTA--EYEVFTDPEEALSYIQEK 138 Query: 150 GFP-VLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE 208 G P ++VKA G+G+ +A + + +A+++ + + V IE++L+ + Sbjct: 139 GAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGD-AGERVVIEEFLDGE-EVS 196 Query: 209 VQIFGDG 215 + F DG Sbjct: 197 LLAFVDG 203 >gnl|CDD|178534 PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase. Length = 577 Score = 40.0 bits (94), Expect = 0.001 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 9/98 (9%) Query: 105 PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYP-HTAMPIAKEIGFPVLVKASAGG-G 162 P S I+I+ DK K + GIP +P E+ +A G+P+++K+ Sbjct: 111 PKSSTIRIIQDKYAQKVHFSKHGIP-LPEFMEIDDLESAEKAGDLFGYPLMLKSRRLAYD 169 Query: 163 GRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKY 200 GRG +A +E DLS A+ AL F +Y EK+ Sbjct: 170 GRGNAVAKTEEDLSSAV-----AALGGFERG-LYAEKW 201 >gnl|CDD|184750 PRK14568, vanB, D-alanine--D-lactate ligase; Provisional. Length = 343 Score = 39.3 bits (92), Expect = 0.002 Identities = 59/231 (25%), Positives = 91/231 (39%), Gaps = 45/231 (19%) Query: 82 YGFLSENAKFAEILEDHHIKFIG---PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVY 138 +G L E+ +LE I ++G SS + DK A A+ GI P V Sbjct: 99 HGKLGEDGAIQGLLELSGIPYVGCDIQSS---ALCMDKSLAYIVAKNAGI-ATPAFWTVT 154 Query: 139 PHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198 P A + +PV VK + G G+ S ++L AI+ AR Y Sbjct: 155 ADER-PDAATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQ-----------YDS 202 Query: 199 KYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQ--------KIWEEAH--------S 242 K L IE + G +G A+ D V +Q +I +E + Sbjct: 203 KVL-----IEEAVVGSEVGCAVLGNGADLVVGEVDQIRLSHGFFRIHQENEPEKGSENST 257 Query: 243 PV----ISAQDRTEIGETCVKAMKKIDYRGAGTIE-FLYENGQFYFIEMNT 288 + ISA++R+ + ET + + RG ++ FL E+G E+NT Sbjct: 258 IIVPADISAEERSRVQETAKAIYRALGCRGLARVDMFLQEDGTVVLNEVNT 308 >gnl|CDD|162031 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001). Length = 277 Score = 39.3 bits (92), Expect = 0.002 Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 14/136 (10%) Query: 92 AEILEDHHIKFIGPSSEHIKIMGDKI-TAKKTAQQLGIPVVPGSGEVY-PHTAMPIAKEI 149 A LE + I S + I GDK T++ A+ G+P P +G P A+ + +EI Sbjct: 66 ARYLESLGVPVINSS-DAILNAGDKFLTSQLLAKA-GLPQ-PRTGLAGSPEEALKLIEEI 122 Query: 150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDA--VYIEKYLENP--R 205 GFPV++K G GR + +A D A + E Y+++Y++ P R Sbjct: 123 GFPVVLKPVFGSWGRLVSLA---RDKQAA--ETLLEHFEQLNGPQNLFYVQEYIKKPGGR 177 Query: 206 HIEVQIFGDGMGNAIH 221 I V + GD + AI+ Sbjct: 178 DIRVFVVGDEVIAAIY 193 >gnl|CDD|117020 pfam08443, RimK, RimK-like ATP-grasp domain. This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK. Length = 190 Score = 38.2 bits (89), Expect = 0.004 Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 19/196 (9%) Query: 114 GDKITAKKTAQQLGIPVVPGSGEV-YPHTAMPIAKEI-GFPVLVKASAGGGGRGMRIAYS 171 DK + + + GIPV P +G P A ++I GFPV+VK+ G G G+ +A Sbjct: 2 RDKAKSHQLLAKHGIPV-PNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAED 60 Query: 172 ENDLSEAIDQARSEALAAFGNDAVYIEKYLENP--RHIEVQIFGDGMGNAIHFGERDCSV 229 E L + ++ + + + +++++ R I + G + AIH + Sbjct: 61 EQSLEQLLEAFKWL------KNQILVQEFIAEAGNRDIRCLVVGGEVVGAIHRQSNEGDF 114 Query: 230 QRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTR 289 R N A P +Q+ EI +AM +D G ++ E+N+ Sbjct: 115 -RTNLHRGGVA-EPYQLSQEEEEIAIKAAQAM-GLDVLG---VDIFRSKRGLLVCEVNSS 168 Query: 290 LQVEHPVTEAITGIDL 305 ++ E TGI++ Sbjct: 169 PGLKG--IERTTGINI 182 >gnl|CDD|184327 PRK13789, PRK13789, phosphoribosylamine--glycine ligase; Provisional. Length = 426 Score = 38.3 bits (89), Expect = 0.004 Identities = 24/114 (21%), Positives = 48/114 (42%) Query: 89 AKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKE 148 A FA+ + I GP S ++ G K AK ++ IP +++ + Sbjct: 82 AGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLES 141 Query: 149 IGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLE 202 P+++KA G+G+ +A + A+ + + + V IE+++E Sbjct: 142 EMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFME 195 >gnl|CDD|181759 PRK09288, purT, phosphoribosylglycinamide formyltransferase 2; Validated. Length = 395 Score = 36.7 bits (86), Expect = 0.014 Identities = 44/199 (22%), Positives = 79/199 (39%), Gaps = 43/199 (21%) Query: 4 KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNI 63 ++++ GE+ + + LG+ +AV A++ AM V A S I L+ Sbjct: 14 RVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQV--AHRSHVI-------DMLDG 64 Query: 64 QQIVAACEVTGADAIHPGYGFLSENAKFAEI----------LEDHHIKFIGPSSEHIKIM 113 + A E D I P EI LE + P++ ++ Sbjct: 65 DALRAVIEREKPDYIVP------------EIEAIATDALVELEKEGFNVV-PTARATRLT 111 Query: 114 GDKITAKKTA-QQLGIPVVP----GS-GEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMR 167 ++ ++ A ++LG+P P S E+ A +EIG+P +VK G+G Sbjct: 112 MNREGIRRLAAEELGLPTSPYRFADSLEELR--AA---VEEIGYPCVVKPVMSSSGKGQS 166 Query: 168 IAYSENDLSEAIDQARSEA 186 + S D+ +A + A+ Sbjct: 167 VVRSPEDIEKAWEYAQEGG 185 >gnl|CDD|179154 PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional. Length = 420 Score = 34.3 bits (80), Expect = 0.072 Identities = 57/246 (23%), Positives = 83/246 (33%), Gaps = 85/246 (34%) Query: 92 AEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIA--KEI 149 + + GP+ ++ G K AK + GIP + E + +A E Sbjct: 79 VDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPT--AAYETFTDAEEALAYLDEK 136 Query: 150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALA--AFGN--DAVYIEKYLENPR 205 G P++VKA G+G+ +A L EA + LA FG+ V IE++L+ Sbjct: 137 GAPIVVKADGLAAGKGVVVA---MTLEEAKAAVD-DMLAGNKFGDAGARVVIEEFLDGE- 191 Query: 206 HIEVQIF----------------------GD------GMGNAIHFGERDCSVQRRNQKIW 237 E F GD GMG Sbjct: 192 --EASFFAFVDGENVLPLPTAQDHKRAGDGDTGPNTGGMG-------------------- 229 Query: 238 EEAHS--PVISAQD----RTEIGETCVKAMKK--IDYRGAGTIEFLY------ENGQFYF 283 A+S PV++ + EI + VK M I Y G LY ++G Sbjct: 230 --AYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTG-----VLYAGLMITKDGP-KV 281 Query: 284 IEMNTR 289 IE N R Sbjct: 282 IEFNAR 287 >gnl|CDD|149489 pfam08442, ATP-grasp_2, ATP-grasp domain. Length = 202 Score = 32.2 bits (74), Expect = 0.27 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 5/68 (7%) Query: 119 AKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLV-KASAGGGGR----GMRIAYSEN 173 AK+ + G+PV G P A IAK++G V V KA GGR G+++A S Sbjct: 7 AKEILAKYGVPVPRGEVAFSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKAGGVKLAKSPE 66 Query: 174 DLSEAIDQ 181 + EA + Sbjct: 67 EAKEAAKE 74 >gnl|CDD|183897 PRK13210, PRK13210, putative L-xylulose 5-phosphate 3-epimerase; Reviewed. Length = 284 Score = 31.4 bits (72), Expect = 0.42 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 6/32 (18%) Query: 253 IGETCV------KAMKKIDYRGAGTIEFLYEN 278 GE CV K +K+++YRG IE E Sbjct: 228 FGEGCVDFVGIFKTLKELNYRGPFLIEMWTEK 259 >gnl|CDD|117914 pfam09372, PRANC, PRANC domain. This presumed domain is found at the C-terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin - C terminal) domain is also found on its own in some proteins. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role. Length = 96 Score = 31.4 bits (72), Expect = 0.45 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Query: 377 YYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIE--GNYDI 434 Y +I K+I R + + + + +N I+ D +P+ IK + I+E N D+ Sbjct: 36 IYGDIIKKIIKKAIERYKLINKAIKVINNILSDSYWNLLPI---EIKYK-ILEYLSNDDL 91 Query: 435 H 435 Sbjct: 92 K 92 >gnl|CDD|162159 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G. Length = 386 Score = 31.2 bits (71), Expect = 0.51 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 12/96 (12%) Query: 119 AKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIG-FPVLVKASAGGGGR----GMRIAYSEN 173 AK+ + GIPV G A IA ++G PV+VKA GGR G+++A S+ Sbjct: 8 AKQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKE 67 Query: 174 DLSEAIDQARSEALAAFGNDA-------VYIEKYLE 202 + A ++ + L D + IE+ + Sbjct: 68 EARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATD 103 >gnl|CDD|128348 smart00033, CH, Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p. Length = 103 Score = 30.7 bits (70), Expect = 0.70 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 6/51 (11%) Query: 384 KLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDI 434 K + +R + + +N AL+ + + + LF+ ED++EGN I Sbjct: 49 KKVNASLSRFKKIENINLALS--FAEKLGGKLVLFE----PEDLVEGNKLI 93 >gnl|CDD|173036 PRK14572, PRK14572, D-alanyl-alanine synthetase A; Provisional. Length = 347 Score = 30.6 bits (69), Expect = 0.73 Identities = 43/227 (18%), Positives = 75/227 (33%), Gaps = 25/227 (11%) Query: 78 IHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVP----- 132 +H G G E+ + L+ I + G + DK A + Q G V P Sbjct: 96 LHGGAG---EDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELE 152 Query: 133 -GSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFG 191 P + + +GFP +K GG + L + L Sbjct: 153 KLKYLNSPRKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLA------LIFES 206 Query: 192 NDAVYIEKY----------LENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAH 241 + V + + LE R + + GE + Q EE Sbjct: 207 DSKVMSQSFLSGTEVSCGVLERYRGGKRNPIALPATEIVPGGEFFDFESKYKQGGSEEIT 266 Query: 242 SPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNT 288 IS Q+ + E ++A + + +G +F+ +G+ + +E NT Sbjct: 267 PARISDQEMKRVQELAIRAHESLGCKGYSRTDFIIVDGEPHILETNT 313 >gnl|CDD|172816 PRK14340, PRK14340, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 445 Score = 30.9 bits (70), Expect = 0.77 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Query: 152 PVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAF 190 P L+ A A G R + +++++ I+ RS +++AF Sbjct: 115 PGLI-ADAREGARPAALDFNQSETYAGIEPVRSGSISAF 152 >gnl|CDD|152128 pfam11692, DUF3289, Protein of unknown function (DUF3289). This family of proteins with unknown function appears to be restricted to Proteobacteria. Length = 277 Score = 29.7 bits (67), Expect = 1.4 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%) Query: 378 YDSLIAKLIVHGKNRKECM---MRLNRALNEIII-DGIKTTIPLFQKLIKNEDIIEGNY 432 Y LI +LI H + + LN AL E+I+ D + L K I + I Sbjct: 103 YKHLIGRLIDHMQYGNGAPFRDLLLNAALKEVILGDKTNNSSLLVIKAILDRGIDWDKK 161 >gnl|CDD|173169 PRK14706, PRK14706, glycogen branching enzyme; Provisional. Length = 639 Score = 28.8 bits (64), Expect = 2.7 Identities = 14/35 (40%), Positives = 21/35 (60%) Query: 344 FIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYY 378 F+ E+T+ APG + I +S S+ G TVP+ Y Sbjct: 337 FLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY 371 >gnl|CDD|181664 PRK09129, PRK09129, NADH dehydrogenase subunit G; Validated. Length = 776 Score = 28.3 bits (64), Expect = 4.0 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 6/34 (17%) Query: 376 SYYDSLIAKLIVHGKNRKECMMRL----NRALNE 405 S +DSL + L+VH KN + +MR+ N A+NE Sbjct: 222 SPHDSLGSNLVVHVKNNR--VMRVVPRENEAVNE 253 >gnl|CDD|183942 PRK13278, purP, 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase; Provisional. Length = 358 Score = 28.3 bits (64), Expect = 4.2 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 148 EIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYL 201 +I PV+VK GGRG IA S + E ID+ L +A I++Y+ Sbjct: 147 DIDRPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEA-IIQEYV 199 >gnl|CDD|179427 PRK02471, PRK02471, bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional. Length = 752 Score = 28.0 bits (63), Expect = 4.9 Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 21/140 (15%) Query: 76 DAIHPGYGF--LSENAKFAEILEDHHIKFIGPSSEHIK-------IMGDKITAKKTAQQL 126 DAI G L E +F ++ + H++++ + K IM +K+ KK + Sbjct: 440 DAIQRGIQVEILDEQDQFLKLQKGDHVEYVKNGNMTSKDNYISPLIMENKVVTKKILAEA 499 Query: 127 GIPVVPGSGEVY-PHTAMPIAKEI-GFPVLVKASAGGGGRGMRI---AYSENDLSEAIDQ 181 G P VP E A+ ++VK + G G+ I S D +A++ Sbjct: 500 GFP-VPAGDEFTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEI 558 Query: 182 ARSEALAAFGNDAVYIEKYL 201 A E + +V +E+++ Sbjct: 559 AFRE------DSSVLVEEFI 572 >gnl|CDD|162282 TIGR01279, DPOR_bchN, light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN. Length = 407 Score = 28.2 bits (63), Expect = 4.9 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 7/55 (12%) Query: 93 EILEDHHIKFI----GPSSEHIKIMGDKITAKKTAQQLGIPV--VPGSGEVYPHT 141 +I D + I + E IK M + A++ + G+PV P SG Y T Sbjct: 78 QIKRDRNPSVIFLLSSCTPEVIK-MDLEGLAERLSTNFGVPVLFAPASGLDYTFT 131 >gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. Length = 493 Score = 27.8 bits (62), Expect = 5.1 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 11/54 (20%) Query: 345 IPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMR 398 IP+P +I ++H P GL +++ YD I +L+ + KE + R Sbjct: 82 IPDPVQI-HYHLPNGLNVKVHRE----------YDDFIQELVAKFPHEKEGIRR 124 >gnl|CDD|167776 PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional. Length = 332 Score = 27.8 bits (62), Expect = 5.9 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%) Query: 99 HIKFIGPSSEHIKIMGDKITAKKTAQQLG 127 H+ ++GP+ MG K + K TA+ LG Sbjct: 73 HVTYLGPTGSQ---MGKKESTKDTARVLG 98 >gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional. Length = 546 Score = 27.7 bits (61), Expect = 6.0 Identities = 15/36 (41%), Positives = 18/36 (50%) Query: 238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIE 273 E A ISA EIG+ AMKK+ G T+E Sbjct: 143 EIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVE 178 >gnl|CDD|184474 PRK14046, PRK14046, malate--CoA ligase subunit beta; Provisional. Length = 392 Score = 27.4 bits (61), Expect = 7.8 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%) Query: 119 AKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPV-LVKASAGGGGRG----MRIAYSEN 173 AK+ G+ V G+ P A+ A+E+G +VKA G RG +++ + N Sbjct: 8 AKELLASFGVAVPRGALAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYN 67 Query: 174 DLSEA 178 ++ +A Sbjct: 68 EVRDA 72 >gnl|CDD|162284 TIGR01282, nifD, nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases. Length = 466 Score = 26.9 bits (60), Expect = 9.5 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Query: 110 IKIMGDKI--TAKKTAQQLGIPVVPGSGEVY 138 + ++GD I AKK +++LG PVVP E + Sbjct: 144 VGLIGDDIEAVAKKASKELGKPVVPVRCEGF 174 >gnl|CDD|178711 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional. Length = 600 Score = 27.2 bits (60), Expect = 9.6 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 16/73 (21%) Query: 238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIE---------FLYENGQF------- 281 E A +SA + E+G +AM K+ +G T+E ++ E QF Sbjct: 197 ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISP 256 Query: 282 YFIEMNTRLQVEH 294 YF+ + ++ VE+ Sbjct: 257 YFVTDSEKMSVEY 269 >gnl|CDD|162690 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase. Length = 1178 Score = 27.0 bits (60), Expect = 9.7 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 104 GPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGG 163 G + +HI+ + + A K + PV+ + A+ IA++ F + + + G Sbjct: 299 GTTPDHIRAIAE---AVKNIKPRQRPVLYEPSRLSGLEAITIAQDSNFVNIGERTNVAGS 355 Query: 164 RGMRIAYSENDLSEAIDQARSE 185 + R D EA+D A+ + Sbjct: 356 KKFRRLIIAEDYDEALDIAKQQ 377 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.137 0.399 Gapped Lambda K H 0.267 0.0631 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,434,289 Number of extensions: 496497 Number of successful extensions: 1461 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1375 Number of HSP's successfully gapped: 86 Length of query: 443 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 347 Effective length of database: 3,920,105 Effective search space: 1360276435 Effective search space used: 1360276435 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (26.7 bits)