RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin
carboxylase subunit [Candidatus Liberibacter asiaticus str. psy62]
         (443 letters)



>gnl|CDD|181492 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase
           subunit; Validated.
          Length = 451

 Score =  861 bits (2226), Expect = 0.0
 Identities = 297/444 (66%), Positives = 359/444 (80%), Gaps = 4/444 (0%)

Query: 1   MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60
           M  KILIANRGEIALRI+RACKELGI TVAVHSTAD  A+HV+LADE+VCIGP  SK SY
Sbjct: 1   MFDKILIANRGEIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSY 60

Query: 61  LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120
           LNI  I++A E+TGADAIHPGYGFLSENA FAEI ED    FIGPS+E I++MGDK+TAK
Sbjct: 61  LNIPAIISAAEITGADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAK 120

Query: 121 KTAQQLGIPVVPGS-GEVY-PHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEA 178
            T ++ G+PVVPGS G V     A+ IAKEIG+PV++KA+AGGGGRGMR+  +E +L +A
Sbjct: 121 ATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKA 180

Query: 179 IDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238
              AR+EA AAFGN  VY+EKYLENPRHIE+Q+  DG GNAIH GERDCS+QRR+QK+ E
Sbjct: 181 FSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLE 240

Query: 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVT 297
           EA SP I+ + R +IGE  VKA K I YRGAGTIEFLYE NG+FYFIEMNTR+QVEHPVT
Sbjct: 241 EAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFYFIEMNTRIQVEHPVT 300

Query: 298 EAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPE-NFIPNPGEITYFHA 356
           E ITG+DLV EQI +A+   LS++Q+DI F GHAIECRINAEDP  NF+P+PG+IT +H 
Sbjct: 301 EMITGVDLVKEQIRIAAGEPLSIKQEDIVFRGHAIECRINAEDPAKNFMPSPGKITRYHP 360

Query: 357 PGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIP 416
           PGG G+R+DSA Y GYT+P YYDS+I KLIVHG+ R+E + R+ RAL+E +IDGIKTTIP
Sbjct: 361 PGGPGVRVDSAVYTGYTIPPYYDSMIGKLIVHGETREEAIARMKRALSEFVIDGIKTTIP 420

Query: 417 LFQKLIKNEDIIEGNYDIHWLENK 440
           L  +L+ + +   G+Y+IH+LE K
Sbjct: 421 LHLRLLNDPNFQAGDYNIHYLEKK 444


>gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase
           subunit.  This model represents the biotin carboxylase
           subunit found usually as a component of acetyl-CoA
           carboxylase. Acetyl-CoA carboxylase is designated EC
           6.4.1.2 and this component, biotin carboxylase, has its
           own designation, EC 6.3.4.14. Homologous domains are
           found in eukaryotic forms of acetyl-CoA carboxylase and
           in a number of other carboxylases (e.g. pyruvate
           carboxylase), but seed members and trusted cutoff are
           selected so as to exclude these. In some systems, the
           biotin carboxyl carrier protein and this protein (biotin
           carboxylase) may be shared by different
           carboxyltransferases. However, this model is not
           intended to identify the biotin carboxylase domain of
           propionyl-coA carboxylase. The model should hit the full
           length of proteins, except for chloroplast transit
           peptides in plants. If it hits a domain only of a longer
           protein, there may be a problem with the identification.
          Length = 449

 Score =  669 bits (1728), Expect = 0.0
 Identities = 269/444 (60%), Positives = 342/444 (77%), Gaps = 4/444 (0%)

Query: 1   MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60
           M+ KILIANRGEIALRILRACKELGI TVAVHSTAD  A+HV LADE+VCIGP  S  SY
Sbjct: 1   MLDKILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSY 60

Query: 61  LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120
           LNI  I++A E+TGADAIHPGYGFLSENA FAE  E     FIGPS+E I++MGDK++A 
Sbjct: 61  LNIPNIISAAEITGADAIHPGYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAI 120

Query: 121 KTAQQLGIPVVPGSGEVYPHT--AMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEA 178
           +T ++ G+P VPGS  +       + IAK IG+PV++KA+AGGGGRGMR+    ++L ++
Sbjct: 121 ETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKS 180

Query: 179 IDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238
           I   R+EA AAFGND VYIEKY+ENPRH+E+Q+  D  GNAI+ GERDCS+QRR+QK+ E
Sbjct: 181 ISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLE 240

Query: 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVT 297
           EA SP ++ + R ++G+  VKA   I YRGAGT+EFL + NG+FYF+EMNTR+QVEHPVT
Sbjct: 241 EAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKNGEFYFMEMNTRIQVEHPVT 300

Query: 298 EAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFHA 356
           E ITG+DL+ EQI +A+   LS++Q+D+   GHAIECRINAEDP + F+P+PG IT +  
Sbjct: 301 EMITGVDLIKEQIRIAAGEPLSLKQEDVVVRGHAIECRINAEDPIKTFLPSPGRITRYLP 360

Query: 357 PGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIP 416
           PGG G+R DS  Y GYTVP YYDS+I KLI +GK R+  + R+ RAL+E IIDGIKTTIP
Sbjct: 361 PGGPGVRWDSHVYSGYTVPPYYDSMIGKLITYGKTREVAIARMKRALSEFIIDGIKTTIP 420

Query: 417 LFQKLIKNEDIIEGNYDIHWLENK 440
             Q+++++E+   G  +IH+LE K
Sbjct: 421 FHQRILEDENFQHGGTNIHYLEKK 444


>gnl|CDD|181524 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated.
          Length = 499

 Score =  646 bits (1669), Expect = 0.0
 Identities = 249/441 (56%), Positives = 328/441 (74%), Gaps = 3/441 (0%)

Query: 1   MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60
           M  KILIANRGEIA+R++RAC+ELGI TVAV+S AD  A+ V+ ADE+  IGP     SY
Sbjct: 1   MFKKILIANRGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSY 60

Query: 61  LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120
           LNI++I+   +  GADAIHPGYGFL+EN +FA+  E   I FIGPSS+ I+ MG KI AK
Sbjct: 61  LNIERIIDVAKKAGADAIHPGYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAK 120

Query: 121 KTAQQLGIPVVPGSGEVY--PHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEA 178
           K  ++ G+PV+PG+ E       A  IA+EIG+PV++KASAGGGG GMR+ YSE +L +A
Sbjct: 121 KLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEDA 180

Query: 179 IDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238
           I+  +S A +AFG+  V+IEKYLE PRHIE+QI  D  GN IH G+R+CS+QRR+QK+ E
Sbjct: 181 IESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQRRHQKLIE 240

Query: 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTE 298
           EA SP+++ + R  +GE  VKA K I+Y  AGT+EFLY NG FYF+EMNTRLQVEHP+TE
Sbjct: 241 EAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSNGNFYFLEMNTRLQVEHPITE 300

Query: 299 AITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPEN-FIPNPGEITYFHAP 357
            +TGID+V EQI +A+   LS +Q+DIT  GHAIECRINAEDP N F P+PG+I  + +P
Sbjct: 301 MVTGIDIVKEQIKIAAGEELSFKQEDITIRGHAIECRINAEDPLNDFAPSPGKIKRYRSP 360

Query: 358 GGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPL 417
           GG G+R+DS  + GY +P YYDS+I+KLIV G+ R+E + R+ RAL E +I G+KT IP 
Sbjct: 361 GGPGVRVDSGVHMGYEIPPYYDSMISKLIVWGRTREEAIARMRRALYEYVIVGVKTNIPF 420

Query: 418 FQKLIKNEDIIEGNYDIHWLE 438
            + +++NE+ + GN   H++E
Sbjct: 421 HKAVMENENFVRGNLHTHFIE 441


>gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated.
          Length = 447

 Score =  634 bits (1637), Expect = 0.0
 Identities = 265/447 (59%), Positives = 354/447 (79%), Gaps = 4/447 (0%)

Query: 1   MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60
           M  KILIANRGEIA+RI+RAC+E+GI TVAV+S AD  A+HV+LADE+VCIGP SSKDSY
Sbjct: 1   MFKKILIANRGEIAVRIIRACREMGIETVAVYSEADKDALHVQLADEAVCIGPASSKDSY 60

Query: 61  LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120
           LNIQ I++A  +TGA AIHPG+GFLSEN+KFA++ ++ +I FIGP SE I++MG+K  A+
Sbjct: 61  LNIQNIISATVLTGAQAIHPGFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAR 120

Query: 121 KTAQQLGIPVVPGS-GEVY-PHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEA 178
           +   + G+PVVPGS GE+     A+ IAKEIG+PV+VKASAGGGGRG+RI  SE +L +A
Sbjct: 121 EIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEELIKA 180

Query: 179 IDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238
            + A+SEA AAFG+D++YIEK++ENP+HIE QI GD  GN +H GERDCS+QRRNQK+ E
Sbjct: 181 FNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCSLQRRNQKVLE 240

Query: 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY-ENGQFYFIEMNTRLQVEHPVT 297
           EA SPV++ + R ++GE  VKA K ++Y+ AGTIEFL  ++G FYF+EMNTR+QVEHP+T
Sbjct: 241 EAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMNTRIQVEHPIT 300

Query: 298 EAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPE-NFIPNPGEITYFHA 356
           E ITG+DLV EQI +A   +LS++Q+DI  +GH+IECRINAEDP+  F+P PG+I   + 
Sbjct: 301 EMITGVDLVKEQIKIAYGEKLSIKQEDIKINGHSIECRINAEDPKNGFMPCPGKIEELYI 360

Query: 357 PGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIP 416
           PGGLG+R+DSA Y GYT+P YYDS+I KLIV+GK+R+E + ++ RAL E II+G+ T I 
Sbjct: 361 PGGLGVRVDSAVYSGYTIPPYYDSMIGKLIVYGKDREEAIQKMKRALGEFIIEGVNTNID 420

Query: 417 LFQKLIKNEDIIEGNYDIHWLENKYLK 443
               ++++E+ I+G YD  ++E K + 
Sbjct: 421 FQFIILEDEEFIKGTYDTSFIEKKLVD 447


>gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase
           subunit; Validated.
          Length = 450

 Score =  626 bits (1617), Expect = e-180
 Identities = 229/442 (51%), Positives = 310/442 (70%), Gaps = 3/442 (0%)

Query: 1   MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60
           M  K+LIANRGEIA+RI+R C++LGI TVA++S AD  A+HV++ADE+  IG P  ++SY
Sbjct: 1   MFQKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESY 60

Query: 61  LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120
           LN+++I+   + TGA+AIHPGYG LSENA FAE  ++  I FIGPS++ I  MG KI A+
Sbjct: 61  LNLEKIIEIAKKTGAEAIHPGYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEAR 120

Query: 121 KTAQQLGIPVVPGSGEVY--PHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEA 178
           +  Q  G+PVVPG          A+ IA++IG+PV++KASAGGGG GM++  +E +L++A
Sbjct: 121 RAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKA 180

Query: 179 IDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238
            +  +  A   FGN  +YIEKY+E+PRHIE+Q+  D  GN ++  ER+CSVQRR+QK+ E
Sbjct: 181 FESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWERECSVQRRHQKVIE 240

Query: 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQ-FYFIEMNTRLQVEHPVT 297
           EA SP +  + R  +GE  V+A K I Y  AGTIEFL +  + FYF+EMNTRLQVEHPVT
Sbjct: 241 EAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMNTRLQVEHPVT 300

Query: 298 EAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAP 357
           E ITGIDLV +Q+ +A+  +LS  Q DI  SGHAIE RI AEDP+ F P+PG+IT    P
Sbjct: 301 EEITGIDLVEQQLRIAAGEKLSFTQDDIKRSGHAIEVRIYAEDPKTFFPSPGKITDLTLP 360

Query: 358 GGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPL 417
           GG G+R D A   G TV  +YD +IAKLI HG+ R+E + RL+ AL E+ ++GIKT IPL
Sbjct: 361 GGEGVRHDHAVENGVTVTPFYDPMIAKLIAHGETREEAISRLHDALEELKVEGIKTNIPL 420

Query: 418 FQKLIKNEDIIEGNYDIHWLEN 439
             +++++     G Y   +L  
Sbjct: 421 LLQVLEDPVFKAGGYTTGFLTK 442


>gnl|CDD|183835 PRK12999, PRK12999, pyruvate carboxylase; Reviewed.
          Length = 1146

 Score =  602 bits (1556), Expect = e-173
 Identities = 219/446 (49%), Positives = 296/446 (66%), Gaps = 14/446 (3%)

Query: 1   MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRL-ADESVCIGPPSSK-D 58
            I K+L+ANRGEIA+RI RA  ELGI TVA++S  D  ++H R  ADE+  IG       
Sbjct: 4   KIKKVLVANRGEIAIRIFRAATELGIRTVAIYSEEDKLSLH-RFKADEAYLIGEGKHPVR 62

Query: 59  SYLNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKIT 118
           +YL+I +I+   +  G DAIHPGYGFLSEN +FA    +  I FIGP++E ++++GDK+ 
Sbjct: 63  AYLDIDEIIRVAKQAGVDAIHPGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVA 122

Query: 119 AKKTAQQLGIPVVPGSGE--VYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLS 176
           A+  A + G+PV+PGS         A+  A+EIG+P+++KASAGGGGRGMRI  SE +L 
Sbjct: 123 ARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELE 182

Query: 177 EAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKI 236
           EA ++A+ EA AAFGND VY+EKY+ENPRHIEVQI GD  GN +H  ERDCSVQRR+QK+
Sbjct: 183 EAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKV 242

Query: 237 WEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY-ENGQFYFIEMNTRLQVEHP 295
            E A +P +S + R  I E  VK  + + Y  AGT+EFL   +G FYFIE+N R+QVEH 
Sbjct: 243 VEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDADGNFYFIEVNPRIQVEHT 302

Query: 296 VTEAITGIDLVHEQIYVASENRLS------VQQKDITFSGHAIECRINAEDPEN-FIPNP 348
           VTE +TGID+V  QI +A    L         Q+DI   G+AI+CRI  EDP N F+P+ 
Sbjct: 303 VTEEVTGIDIVQSQILIAEGATLHDLEIGIPSQEDIRLRGYAIQCRITTEDPANNFMPDT 362

Query: 349 GEITYFHAPGGLGIRMDS-ASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEII 407
           G IT + +PGG G+R+D   ++ G  +  YYDSL+ KL   G+  ++ + R+ RAL E  
Sbjct: 363 GRITAYRSPGGFGVRLDGGNAFAGAEITPYYDSLLVKLTAWGRTFEQAVARMRRALREFR 422

Query: 408 IDGIKTTIPLFQKLIKNEDIIEGNYD 433
           I G+KT IP  + ++K+ D   G+Y 
Sbjct: 423 IRGVKTNIPFLENVLKHPDFRAGDYT 448


>gnl|CDD|183781 PRK12833, PRK12833, acetyl-CoA carboxylase biotin carboxylase
           subunit; Provisional.
          Length = 467

 Score =  564 bits (1455), Expect = e-161
 Identities = 230/443 (51%), Positives = 307/443 (69%), Gaps = 6/443 (1%)

Query: 2   ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYL 61
           I K+L+ANRGEIA+RI+RA +ELG+ TVA  S AD  ++  R+ADE+V IGP  +  SYL
Sbjct: 5   IRKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYL 64

Query: 62  NIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKK 121
           N   I+AA    GADAIHPGYGFLSENA FAE +E   + F+GP ++ I+ MGDK  A++
Sbjct: 65  NPAAILAAARQCGADAIHPGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARR 124

Query: 122 TAQQLGIPVVPGS-GEVYP-HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAI 179
           TA++ G+P VPGS G V     A+ +A  IG+P+++KA+AGGGGRG+R+A+    L+  +
Sbjct: 125 TARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAAQLAAEL 184

Query: 180 DQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEE 239
             A+ EA AAFG+  VY+E+++   RHIEVQI GDG    +H  ER+CS+QRR QKI EE
Sbjct: 185 PLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-RVVHLFERECSLQRRRQKILEE 243

Query: 240 AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY--ENGQFYFIEMNTRLQVEHPVT 297
           A SP ++   R  +  + V+  +++ YRGAGT+E+L+    G+FYFIEMNTR+QVEHPVT
Sbjct: 244 APSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTRIQVEHPVT 303

Query: 298 EAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPE-NFIPNPGEITYFHA 356
           EAITGIDLV E + +A    L   Q DI   G A+ECRINAEDP  +F PNPG I     
Sbjct: 304 EAITGIDLVQEMLRIADGEPLRFAQGDIALRGAALECRINAEDPLRDFFPNPGRIDALVW 363

Query: 357 PGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIP 416
           P G G+R+DS  Y GY VP +YDSL+AKLIVHG++R   + R  RAL E+ IDG+KTT P
Sbjct: 364 PQGPGVRVDSLLYPGYRVPPFYDSLLAKLIVHGEDRAAALARAARALRELRIDGMKTTAP 423

Query: 417 LFQKLIKNEDIIEGNYDIHWLEN 439
           L + L+ + D+  G +  ++LE 
Sbjct: 424 LHRALLADADVRAGRFHTNFLEA 446


>gnl|CDD|181436 PRK08462, PRK08462, biotin carboxylase; Validated.
          Length = 445

 Score =  562 bits (1451), Expect = e-161
 Identities = 234/443 (52%), Positives = 310/443 (69%), Gaps = 4/443 (0%)

Query: 2   ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYL 61
           I +ILIANRGEIALR +R  +E+G   +A++STAD  A++++ AD  +CIG   S +SYL
Sbjct: 4   IKRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYL 63

Query: 62  NIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKK 121
           NI  I++A E+  ADAI PGYGFLSEN  F EI   H+IKFIGPS E + +M DK  AK+
Sbjct: 64  NIPAIISAAEIFEADAIFPGYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKE 123

Query: 122 TAQQLGIPVVPGS-GEVYP-HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAI 179
             ++ G+PV+PGS G +     A  IAKEIG+PV++KA+AGGGGRGMR+   E+DL    
Sbjct: 124 VMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLY 183

Query: 180 DQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEE 239
             A SEAL+AFG+  +Y+EK++ NPRHIEVQI GD  GN IH GERDCS+QRR+QK+ EE
Sbjct: 184 LAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSLQRRHQKLIEE 243

Query: 240 AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQ-FYFIEMNTRLQVEHPVTE 298
           + + V+  + R  + ET +KA K I Y GAGT EFL ++   FYF+EMNTRLQVEH V+E
Sbjct: 244 SPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSNLDFYFMEMNTRLQVEHTVSE 303

Query: 299 AITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPG 358
            ++G+DL+   I +A    L   Q+ I   GHAIECRI AEDP+ F P+PG+IT + APG
Sbjct: 304 MVSGLDLIEWMIKIAEGEELP-SQESIKLKGHAIECRITAEDPKKFYPSPGKITKWIAPG 362

Query: 359 GLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLF 418
           G  +RMDS +Y GY VP YYDS+I KLIV G++R   + ++ RAL E  ++GIKTTIP  
Sbjct: 363 GRNVRMDSHAYAGYVVPPYYDSMIGKLIVWGEDRNRAIAKMKRALKEFKVEGIKTTIPFH 422

Query: 419 QKLIKNEDIIEGNYDIHWLENKY 441
            ++++N D I   YD  +LE  +
Sbjct: 423 LEMMENADFINNKYDTKYLEEHF 445


>gnl|CDD|180865 PRK07178, PRK07178, pyruvate carboxylase subunit A; Validated.
          Length = 472

 Score =  538 bits (1389), Expect = e-154
 Identities = 225/443 (50%), Positives = 313/443 (70%), Gaps = 5/443 (1%)

Query: 1   MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60
           MI KILIANRGEIA+RI+RAC E+GI +VA++S AD  A+HV+ ADE+  IG       Y
Sbjct: 1   MIKKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGA-DPLAGY 59

Query: 61  LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120
           LN +++V     TG DA+HPGYGFLSENA+ AEI  +  IKFIGPS+E I+ MGDK  A+
Sbjct: 60  LNPRRLVNLAVETGCDALHPGYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEAR 119

Query: 121 KTAQQLGIPVVPGS-GEVYP-HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEA 178
           +   + G+PV PGS G +     A+  A+ IG+PV++KA++GGGGRG+R   S  +L + 
Sbjct: 120 RAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKATSGGGGRGIRRCNSREELEQN 179

Query: 179 IDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWE 238
             +  SEA  AFG+  V++EK + NP+HIEVQI  D  GN +H  ERDCS+QRRNQK+ E
Sbjct: 180 FPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDCSIQRRNQKLIE 239

Query: 239 EAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTRLQVEHPVT 297
            A SP ++ + R  IG+  V+A K + Y  AGT+EFL + +G+ YF+EMNTR+QVEH +T
Sbjct: 240 IAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGEVYFMEMNTRVQVEHTIT 299

Query: 298 EAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPEN-FIPNPGEITYFHA 356
           E ITGID+V EQI +AS   LS +Q+DI   G A++ RINAEDP+N F+P+ G+IT ++A
Sbjct: 300 EEITGIDIVREQIRIASGLPLSYKQEDIQHRGFALQFRINAEDPKNDFLPSFGKITRYYA 359

Query: 357 PGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIP 416
           PGG G+R D+A Y GYT+P YYDS+ AKLIV     +E + R  RAL+++ + G+KTTIP
Sbjct: 360 PGGPGVRTDTAIYTGYTIPPYYDSMCAKLIVWALTWEEALDRGRRALDDMRVQGVKTTIP 419

Query: 417 LFQKLIKNEDIIEGNYDIHWLEN 439
            +Q++++N +   G ++  ++E+
Sbjct: 420 YYQEILRNPEFRSGQFNTSFVES 442


>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase.  This enzyme plays a
           role in gluconeogensis but not glycolysis.
          Length = 1143

 Score =  492 bits (1267), Expect = e-139
 Identities = 213/450 (47%), Positives = 297/450 (66%), Gaps = 16/450 (3%)

Query: 4   KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSK---DSY 60
           KIL+ANRGEIA+R+ RA  ELGI TVA++S  D  ++H + ADES  +G        ++Y
Sbjct: 1   KILVANRGEIAIRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAY 60

Query: 61  LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120
           L+I +I+   ++ G DAIHPGYGFLSEN++FA+      I FIGP +E +  +GDK+ A+
Sbjct: 61  LSIDEIIRVAKLNGVDAIHPGYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAAR 120

Query: 121 KTAQQLGIPVVPGSGEVYPHT---AMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSE 177
             A + G+PVVPG+ +  P T    +  A  IG+PV++KAS GGGGRGMR+  SE D+++
Sbjct: 121 NLAIKAGVPVVPGT-DGPPETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVAD 179

Query: 178 AIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIW 237
           A  +A+SEA AAFGND VY+EK +E PRHIEVQ+ GD  GN +H  ERDCSVQRR+QK+ 
Sbjct: 180 AFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVV 239

Query: 238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY-ENGQFYFIEMNTRLQVEHPV 296
           E A +P +S + R EI E  VK  K ++Y  AGT+EFL   +G+FYFIE+N R+QVEH V
Sbjct: 240 EVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDGKFYFIEVNPRIQVEHTV 299

Query: 297 TEAITGIDLVHEQIYVASENRLSV------QQKDITFSGHAIECRINAEDPE-NFIPNPG 349
           TE ITGID+V  QI++A    L         Q+DI  +G+AI+CR+  EDP  NF P+ G
Sbjct: 300 TEEITGIDIVQAQIHIADGASLPTPQLGVPNQEDIRTNGYAIQCRVTTEDPANNFQPDTG 359

Query: 350 EITYFHAPGGLGIRMDSA-SYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIII 408
            I  + + GG GIR+D   SY G  +  YYDSL+ K+       +E   +++RAL E  I
Sbjct: 360 RIEAYRSAGGFGIRLDGGNSYAGAIITPYYDSLLVKVSAWASTPEEAAAKMDRALREFRI 419

Query: 409 DGIKTTIPLFQKLIKNEDIIEGNYDIHWLE 438
            G+KT IP  + ++ +   ++G+YD  +++
Sbjct: 420 RGVKTNIPFLENVLGHPKFLDGSYDTRFID 449


>gnl|CDD|162983 TIGR02712, urea_carbox, urea carboxylase.  Members of this family
           are ATP-dependent urea carboxylase, including
           characterized members from Oleomonas sagaranensis (alpha
           class Proteobacterium) and yeasts such as Saccharomyces
           cerevisiae. The allophanate hydrolase domain of the
           yeast enzyme is not included in this model and is
           represented by an adjacent gene in Oleomonas
           sagaranensis. The fusion of urea carboxylase and
           allophanate hydrolase is designated urea amidolyase. The
           enzyme from Oleomonas sagaranensis was shown to be
           highly active on acetamide and formamide as well as
           urea.
          Length = 1201

 Score =  484 bits (1249), Expect = e-137
 Identities = 192/428 (44%), Positives = 286/428 (66%), Gaps = 8/428 (1%)

Query: 4   KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNI 63
            +LIANRGEIA+RI+R  + +GI +VAV+S AD+ + HV  ADE+VC+G   + +SYL+I
Sbjct: 3   TVLIANRGEIAVRIIRTLRRMGIRSVAVYSDADAASQHVLDADEAVCLGGAPAAESYLDI 62

Query: 64  QQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTA 123
            +I+AA + TGA AIHPGYGFLSENA FAE  E   I F+GP+ E I+  G K TA++ A
Sbjct: 63  DKILAAAKKTGAQAIHPGYGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELA 122

Query: 124 QQLGIPVVPGSGEVYP-HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQA 182
           +  G+P++PG+G +     A+  AKEIG+PV++K++AGGGG GM+   S  +L+EA +  
Sbjct: 123 EAAGVPLLPGTGLLSSLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETV 182

Query: 183 RSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHS 242
           +    + FG+  V++E+++EN RH+EVQIFGDG G  +  GERDCS+QRRNQK+ EE  +
Sbjct: 183 KRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEETPA 242

Query: 243 PVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY--ENGQFYFIEMNTRLQVEHPVTEAI 300
           P +  + R  +     +  + ++YR AGT+EF+Y     +FYF+E+NTRLQVEHPVTE +
Sbjct: 243 PNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVEHPVTEMV 302

Query: 301 TGIDLVHEQIYVASENRLSVQQ--KDITFSGHAIECRINAEDP-ENFIPNPGEITYFHAP 357
           TG+DLV   I +A+            +T  G AIE R+ AE+P +NF P+PG +T    P
Sbjct: 303 TGLDLVEWMIRIAAGELPDFASLNISLTPRGAAIEARVYAENPAKNFQPSPGLLTDVQFP 362

Query: 358 GGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPL 417
               +R+D+    G  V   YD ++AK+IVHG +R++ +++L++AL E  + GI+T +  
Sbjct: 363 D--DVRVDTWVETGTEVSPEYDPMLAKIIVHGSDREDAILKLHQALAETRVYGIETNLDY 420

Query: 418 FQKLIKNE 425
            + ++ +E
Sbjct: 421 LRSILSSE 428


>gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated.
          Length = 478

 Score =  473 bits (1219), Expect = e-134
 Identities = 223/445 (50%), Positives = 303/445 (68%), Gaps = 6/445 (1%)

Query: 1   MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60
           MI KILIANRGEIA+R++RAC++L I +VA+++  D   +HV++ADE+  IG    K  Y
Sbjct: 1   MIHKILIANRGEIAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPIK-GY 59

Query: 61  LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120
           L++++IV   +  GADAIHPGYGFLSEN +FA+ +ED  I FIGP SE I+ MG+K  A+
Sbjct: 60  LDVKRIVEIAKACGADAIHPGYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIAR 119

Query: 121 KTAQQLGIPVVPGSGEVYPHTAMPI---AKEIGFPVLVKASAGGGGRGMRIAYSENDLSE 177
              ++ GIP+VPG+ ++   +   I   A++IG+PV++KAS GGGGRG+R+ + E DL  
Sbjct: 120 YLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKASGGGGGRGIRVVHKEEDLEN 179

Query: 178 AIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIW 237
           A +  + EALA F ND V++EKY+ NPRHIE QI GD  GN IH  ERDCS+QRR+QK+ 
Sbjct: 180 AFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVI 239

Query: 238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY-ENGQFYFIEMNTRLQVEHPV 296
           E A  P IS   R  +G T V A K + Y  AGTIEFL  +  +FYF+EMNTR+QVEH V
Sbjct: 240 EIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNTRIQVEHGV 299

Query: 297 TEAITGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDP-ENFIPNPGEITYFH 355
           TE ITGIDL+  QI +A+   L ++Q DI   G AIE RI AE+  +NFIP+PG+IT ++
Sbjct: 300 TEEITGIDLIVRQIRIAAGEILDLEQSDIKPRGFAIEARITAENVWKNFIPSPGKITEYY 359

Query: 356 APGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTI 415
              G  +R+DS  Y+ YT+P YYDS++AKLIV   +    + +L RAL E +IDGI+TTI
Sbjct: 360 PALGPSVRVDSHIYKDYTIPPYYDSMLAKLIVKATSYDLAVNKLERALKEFVIDGIRTTI 419

Query: 416 PLFQKLIKNEDIIEGNYDIHWLENK 440
           P    + K  +   G +D  ++E  
Sbjct: 420 PFLIAITKTREFRRGYFDTSYIETH 444


>gnl|CDD|129111 smart00878, Biotin_carb_C, Biotin carboxylase C-terminal domain.
           Biotin carboxylase is a component of the acetyl-CoA
           carboxylase multi-component enzyme which catalyses the
           first committed step in fatty acid synthesis in animals,
           plants and bacteria. Most of the active site residues
           reported in reference are in this C-terminal domain.
          Length = 107

 Score =  174 bits (443), Expect = 5e-44
 Identities = 59/107 (55%), Positives = 78/107 (72%), Gaps = 1/107 (0%)

Query: 333 ECRINAEDPE-NFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKN 391
           ECRINAEDP   F+P+PG IT +  PGG G+R+DS  Y+GY VP YYDS+IAKLIVHG+ 
Sbjct: 1   ECRINAEDPANGFLPSPGRITRYRFPGGPGVRVDSGVYEGYEVPPYYDSMIAKLIVHGET 60

Query: 392 RKECMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDIHWLE 438
           R+E + RL RAL+E  I+G+KT IP  + L+++ D   G+ D  +LE
Sbjct: 61  REEAIARLRRALDEFRIEGVKTNIPFLRALLRHPDFRAGDVDTGFLE 107


>gnl|CDD|183765 PRK12815, carB, carbamoyl phosphate synthase large subunit;
           Reviewed.
          Length = 1068

 Score = 83.5 bits (207), Expect = 1e-16
 Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 38/233 (16%)

Query: 90  KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEI 149
             A+ LE+  +  +G S + I  + D+    +   +LG+P VPG        A   AK I
Sbjct: 645 NLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDEEEAFAFAKRI 704

Query: 150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEV 209
           G+PVL++ S   GG+GM + Y E  L   + +  S          + I+++++  +  EV
Sbjct: 705 GYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENAS------QLYPILIDQFIDG-KEYEV 757

Query: 210 QIFGDGMGNAI-----HFGERDCSVQRRNQKIWEEA--HS---------PVISAQDRTEI 253
               DG    I     H                E+A  HS           +S + + +I
Sbjct: 758 DAISDGEDVTIPGIIEHI---------------EQAGVHSGDSIAVLPPQSLSEEQQEKI 802

Query: 254 GETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLV 306
            +  +K  KK+ +RG   I+F+  N + Y +E+N R     P     TG+ L 
Sbjct: 803 RDYAIKIAKKLGFRGIMNIQFVLANDEIYVLEVNPRASRTVPFVSKATGVPLA 855



 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 58/243 (23%), Positives = 99/243 (40%), Gaps = 51/243 (20%)

Query: 76  DAIHPGYGFLSENA-----KFAE--ILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGI 128
           DA+    G   + A     K  E  ILE + ++ +G + E I+   D+   +   ++LG 
Sbjct: 84  DALLATLG--GQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGE 141

Query: 129 PVVPGSGEVYP-HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEAL 187
           PV P S  V     A+  A++IGFP++V+ +   GG G  IA +  +L       +    
Sbjct: 142 PV-PESEIVTSVEEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEEL---EQLFKQGLQ 197

Query: 188 AAFGNDAVYIEKYLENPRHIEVQIFGDGMGN-------------AIHFGERDCSVQRRNQ 234
           A+  +    +E+ +   + IE ++  D  GN              IH G  D  V     
Sbjct: 198 ASPIHQ-CLLEESIAGWKEIEYEVMRDRNGNCITVCNMENIDPVGIHTG--DSIV----- 249

Query: 235 KIWEEAHSPVISAQDRT-----EIGETCVKAMKKIDYRGAGTIEFL--YENGQFYFIEMN 287
                    V  +Q  T      +    +K +  +   G   I+F    ++ Q+Y IE+N
Sbjct: 250 ---------VAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVN 300

Query: 288 TRL 290
            R+
Sbjct: 301 PRV 303


>gnl|CDD|162321 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large
           subunit.  In several thermophilic species
           (Methanobacterium thermoautotrophicum, Methanococcus
           jannaschii, Aquifex aeolicus), the large subunit appears
           split, at different points, into two separate genes.
          Length = 1050

 Score = 80.8 bits (200), Expect = 6e-16
 Identities = 63/229 (27%), Positives = 100/229 (43%), Gaps = 27/229 (11%)

Query: 90  KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEI 149
             A+ LE+  +  +G S E I    D+    +   +LGIP            A+  A EI
Sbjct: 644 NLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSVEEAVEFASEI 703

Query: 150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEV 209
           G+PVLV+ S   GGR M I Y+E +L   ++    EA+       V I+KYLE+   ++V
Sbjct: 704 GYPVLVRPSYVLGGRAMEIVYNEEELRRYLE----EAVEVSPEHPVLIDKYLEDAVEVDV 759

Query: 210 QIFGDG-----------MGNA-IHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETC 257
               DG           +  A +H G+  C +               +SA+    I +  
Sbjct: 760 DAVSDGEEVLIPGIMEHIEEAGVHSGDSTCVLP-----------PQTLSAEIVDRIKDIV 808

Query: 258 VKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLV 306
            K  K+++ +G   I+F  ++G+ Y IE+N R     P     TG+ L+
Sbjct: 809 RKIAKELNVKGLMNIQFAVKDGEVYVIEVNPRASRTVPFVSKATGVPLI 857



 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 80/321 (24%), Positives = 147/321 (45%), Gaps = 56/321 (17%)

Query: 2   ISKILIANRGEIAL-----------RILRACKELGIPTVAVHSTADSGAMHVRLADESVC 50
           I KIL+   G I +           +  +A KE G   + V+S   +      +AD+ V 
Sbjct: 6   IKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADK-VY 64

Query: 51  IGPPSSKDSYLNIQQIVAACEVTGADAIHPGYG-----FLSENAKFAEILEDHHIKFIGP 105
           I P + +     +++I+   E    DAI P +G      L+   + + +LE + ++ +G 
Sbjct: 65  IEPLTPE----AVEKII---EKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGT 117

Query: 106 SSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYP-HTAMPIAKEIGFPVLVKASAGGGGR 164
             E IK   D+   ++  +++G PV P S   +    A+  AKEIG+PV+V+ +   GG 
Sbjct: 118 PVEAIKKAEDRELFREAMKEIGEPV-PESEIAHSVEEALAAAKEIGYPVIVRPAFTLGGT 176

Query: 165 GMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAI---- 220
           G  IAY+  +L E  ++    AL+A   + V +EK L   + IE ++  D   N I    
Sbjct: 177 GGGIAYNREELKEIAER----ALSASPINQVLVEKSLAGWKEIEYEVMRDSNDNCITVCN 232

Query: 221 ---------HFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGT 271
                    H G+   S+          A S  ++ ++   + +  +K ++++   G   
Sbjct: 233 MENFDPMGVHTGD---SIV--------VAPSQTLTDKEYQMLRDASIKIIRELGIEGGCN 281

Query: 272 IEFLY--ENGQFYFIEMNTRL 290
           ++F    ++G++Y IE+N R+
Sbjct: 282 VQFALNPDSGRYYVIEVNPRV 302


>gnl|CDD|162248 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine ligase.  but a
           number of antibiotic resistance proteins score above the
           trusted cutoff of this model.
          Length = 315

 Score = 74.6 bits (184), Expect = 5e-14
 Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 22/224 (9%)

Query: 77  AIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE 136
            +H  YG   E+     +LE   I + G       +  DK+  K   + LG+P       
Sbjct: 70  VLHGRYG---EDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVL 126

Query: 137 VYPHTAMPIAK------EIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAF 190
                +    +       +GFPV+VK +  G   G+    SE +L  A+D+A       +
Sbjct: 127 TQNRASADELECEQVAEPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFE-----Y 181

Query: 191 GNDAVYIEKYLENPRHIEVQIFGDGMGN-AIHFGERDCSVQRRNQKIWEEAHSPVISAQD 249
             + V +E++++  R +EV I G+      I              K  + +   VI A  
Sbjct: 182 DEE-VLVEQFIK-GRELEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAPL 239

Query: 250 RTE----IGETCVKAMKKIDYRGAGTIEFLY-ENGQFYFIEMNT 288
             E    I E  +KA K +  RG   ++F   E G+ Y  E+NT
Sbjct: 240 DEELEEKIKELALKAYKALGCRGLARVDFFLDEEGEIYLNEINT 283


>gnl|CDD|148851 pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-terminus.  This
           family represents the C-terminal, catalytic domain of
           the D-alanine--D-alanine ligase enzyme EC:6.3.2.4.
           D-Alanine is one of the central molecules of the
           cross-linking step of peptidoglycan assembly. There are
           three enzymes involved in the D-alanine branch of
           peptidoglycan biosynthesis: the pyridoxal
           phosphate-dependent D-alanine racemase (Alr), the
           ATP-dependent D-alanine:D-alanine ligase (Ddl), and the
           ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
          Length = 201

 Score = 67.7 bits (166), Expect = 6e-12
 Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 18/177 (10%)

Query: 123 AQQLGIPVVP----GSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEA 178
            +  GIPV P       +    T   + +++G+PV VK +  G   G+    S  +L  A
Sbjct: 2   LKAAGIPVAPFIVLTREDWVLATIEKVEEKLGYPVFVKPANLGSSVGISKVTSREELQSA 61

Query: 179 IDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGER--DCSVQRRNQK- 235
           I++A       + N  V IE+ +E  R IE  + G+        GE            K 
Sbjct: 62  IEEAFQ-----YDNK-VLIEEAIEG-REIECAVLGNEDLEVSPVGEIRLSGGFYDYEAKY 114

Query: 236 IWEEAHSPV---ISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY-ENGQFYFIEMNT 288
           I   A   V   +  +   +I E  +KA K +  RG   I+F   E+G+ Y  E+NT
Sbjct: 115 ILSSAQIIVPADLPEEVEEQIQELALKAYKALGCRGLARIDFFLTEDGEIYLNEVNT 171


>gnl|CDD|179998 PRK05294, carB, carbamoyl phosphate synthase large subunit;
           Reviewed.
          Length = 1066

 Score = 66.3 bits (163), Expect = 1e-11
 Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 6/127 (4%)

Query: 90  KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVY-PHTAMPIAKE 148
           K A+ LE   +  +G S + I +  D+    K  ++LGIP  P +G       A+ +A+E
Sbjct: 644 KLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQ-PPNGTATSVEEALEVAEE 702

Query: 149 IGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE 208
           IG+PVLV+ S   GGR M I Y E +L   +     EA+    +  V I+K+LE    ++
Sbjct: 703 IGYPVLVRPSYVLGGRAMEIVYDEEELERYM----REAVKVSPDHPVLIDKFLEGAIEVD 758

Query: 209 VQIFGDG 215
           V    DG
Sbjct: 759 VDAICDG 765



 Score = 53.6 bits (130), Expect = 1e-07
 Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 10/130 (7%)

Query: 94  ILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHT---AMPIAKEIG 150
           +LE + ++ IG   E I    D+   K+  +++G+P VP SG    H+   A+ +A+EIG
Sbjct: 107 VLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLP-VPRSGIA--HSMEEALEVAEEIG 163

Query: 151 FPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQ 210
           +PV+++ S   GG G  IAY+E +L E +       L       V IE+ L   +  E +
Sbjct: 164 YPVIIRPSFTLGGTGGGIAYNEEELEEIV----ERGLDLSPVTEVLIEESLLGWKEYEYE 219

Query: 211 IFGDGMGNAI 220
           +  D   N I
Sbjct: 220 VMRDKNDNCI 229


>gnl|CDD|178336 PLN02735, PLN02735, carbamoyl-phosphate synthase.
          Length = 1102

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 55/217 (25%), Positives = 89/217 (41%), Gaps = 30/217 (13%)

Query: 99  HIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKAS 158
           ++K  G S + I    D+        +L I    G        A+ IAK IG+PV+V+ S
Sbjct: 686 NVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARSEADALAIAKRIGYPVVVRPS 745

Query: 159 AGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGN 218
              GGR M I YS++ L   ++     A+       V ++KYL +   I+V    D  GN
Sbjct: 746 YVLGGRAMEIVYSDDKLKTYLET----AVEVDPERPVLVDKYLSDATEIDVDALADSEGN 801

Query: 219 -------------AIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKID 265
                         +H G+  CS+  +            I +     I +   K  K+++
Sbjct: 802 VVIGGIMEHIEQAGVHSGDSACSLPTQT-----------IPSSCLATIRDWTTKLAKRLN 850

Query: 266 YRGAGTIEF-LYENGQFYFIEMNTRLQVEHP-VTEAI 300
             G    ++ +  +G+ Y IE N R     P V++AI
Sbjct: 851 VCGLMNCQYAITPSGEVYIIEANPRASRTVPFVSKAI 887



 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 12/146 (8%)

Query: 76  DAIHPGYG---FLSENAKFAE--ILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPV 130
           DA+ P  G    L+     AE  ILE + ++ IG   + IK   D+   K+  +++G+  
Sbjct: 100 DALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKT 159

Query: 131 VP-GSGEVYPHTAMPIAKEIG-FPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALA 188
            P G           IA++IG FP++++ +   GG G  IAY++ +  E I +A    LA
Sbjct: 160 PPSGIATTLDE-CFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEF-ETICKA---GLA 214

Query: 189 AFGNDAVYIEKYLENPRHIEVQIFGD 214
           A     V +EK L   +  E+++  D
Sbjct: 215 ASITSQVLVEKSLLGWKEYELEVMRD 240


>gnl|CDD|162228 TIGR01161, purK, phosphoribosylaminoimidazole carboxylase, PurK
           protein.  Phosphoribosylaminoimidazole carboxylase is a
           fusion protein in plants and fungi, but consists of two
           non-interacting proteins in bacteria, PurK and PurE.
           This model represents PurK, N5-carboxyaminoimidazole
           ribonucleotide synthetase, which hydrolyzes ATP and
           converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR.
           In the presence of high concentrations of bicarbonate,
           PurE is reported able to convert AIR to CAIR directly
           and without ATP.
          Length = 352

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 63/271 (23%), Positives = 116/271 (42%), Gaps = 26/271 (9%)

Query: 11  GEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAAC 70
           G++   +  A + LGI    +   A+S A  V++AD  V + P     +   I+++  +C
Sbjct: 8   GQLGRMLALAARPLGIKVHVLDPDANSPA--VQVADHVV-LAPFFDPAA---IRELAESC 61

Query: 71  EVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPV 130
           +V   +  H     L +       LE   +K   PS + + I+ D++T K+  Q+LG+PV
Sbjct: 62  DVITFEFEHVDVEALEK-------LEARGVKLF-PSPDALAIIQDRLTQKQFLQKLGLPV 113

Query: 131 VPGSGEVYPHTAMPIAKEIGFPVLVKASAGG-GGRGMRIAYSENDLSEAIDQARSEALAA 189
            P              +E+GFPV++KA  GG  GRG     +E DL +A           
Sbjct: 114 PPFLVIKDEEELDAALQELGFPVVLKARTGGYDGRGQYRIRNEADLPQAA--------KE 165

Query: 190 FGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQD 249
            G+    +E+++   R + V +     G    F     ++ +     +  A +  +    
Sbjct: 166 LGDRECIVEEFVPFERELSVIVARSADG-ETAFYPVVENIHQDGILRYVVAPAA-VPDAI 223

Query: 250 RTEIGETCVKAMKKIDYRGAGTIE-FLYENG 279
           +    E   + M+++ Y G   +E F+  +G
Sbjct: 224 QARAEEIARRLMEELGYVGVLAVEMFVLPDG 254


>gnl|CDD|179288 PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.
          Length = 304

 Score = 61.3 bits (150), Expect = 5e-10
 Identities = 41/197 (20%), Positives = 77/197 (39%), Gaps = 49/197 (24%)

Query: 115 DKITAKKTAQQLGIPVVPGSGEVYPHTAMP-IAKEIGFPVLVKASAGGGGRGMRIAYSEN 173
           DK+  K   Q  G+P  P    +     +     ++G P++VK +  G   G+     E+
Sbjct: 98  DKLRTKLVWQAAGLPT-PPWIVLTREEDLLAAIDKLGLPLVVKPAREGSSVGVSKVKEED 156

Query: 174 DLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGM----------------- 216
           +L  A++ A       + ++ V +EKY++  R + V + G                    
Sbjct: 157 ELQAALELA-----FKYDDE-VLVEKYIKG-RELTVAVLGGKALPVIEIVPAGEFYDYEA 209

Query: 217 ----GNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTI 272
               G   +     C                 + A+   E+ E  +KA + +  RG G +
Sbjct: 210 KYLAGGTQYI----CPAG--------------LPAEIEAELQELALKAYRALGCRGWGRV 251

Query: 273 EFLY-ENGQFYFIEMNT 288
           +F+  E+G+ Y +E+NT
Sbjct: 252 DFMLDEDGKPYLLEVNT 268


>gnl|CDD|183732 PRK12767, PRK12767, carbamoyl phosphate synthase-like protein;
           Provisional.
          Length = 326

 Score = 61.1 bits (149), Expect = 5e-10
 Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 34/254 (13%)

Query: 44  LADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY----GFLSENAKFAEILEDHH 99
            AD+   + P  +  +Y  I +++  C+    D + P        L++N       E+  
Sbjct: 42  FADKFY-VVPKVTDPNY--IDRLLDICKKEKIDLLIPLIDPELPLLAQNRD---RFEEIG 95

Query: 100 IKFIGPSSEHIKIMGDKITAKKTAQQLGIPVV----PGSGEVYPHTAMPIAKEIGFPVLV 155
           +K +  S E I+I  DK    +  ++ GIP      P S E     A     E+ FP+ V
Sbjct: 96  VKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESLED--FKAALAKGELQFPLFV 153

Query: 156 KASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDG 215
           K   G    G+     + +L   ++              + I++++E      V +  D 
Sbjct: 154 KPRDGSASIGVFKVNDKEELEFLLEY----------VPNLIIQEFIEGQE-YTVDVLCDL 202

Query: 216 MGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFL 275
            G  I        V R+  ++     S  ++ +D  E+ +   +  + +  RG   I+  
Sbjct: 203 NGEVIS------IVPRKRIEVRAGETSKGVTVKDP-ELFKLAERLAEALGARGPLNIQCF 255

Query: 276 YENGQFYFIEMNTR 289
             +G+ Y  E+N R
Sbjct: 256 VTDGEPYLFEINPR 269


>gnl|CDD|179356 PRK01966, ddl, D-alanyl-alanine synthetase A; Reviewed.
          Length = 333

 Score = 60.1 bits (147), Expect = 1e-09
 Identities = 54/230 (23%), Positives = 88/230 (38%), Gaps = 38/230 (16%)

Query: 78  IHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPG---- 133
           +H   G   E+     +LE   I ++G       +  DKI  K+     GIPV P     
Sbjct: 89  LHGPPG---EDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLT 145

Query: 134 SGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGND 193
            G+    +   I  ++G PV VK +  G   G+    +E +L+ A+D A           
Sbjct: 146 RGDWEEASLAEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEYD------R 199

Query: 194 AVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSV--QRRNQKIW-----------EEA 240
            V +E+ +   R IE  + G          +   SV  +      +            E 
Sbjct: 200 KVLVEQGI-KGREIECAVLG---------NDPKASVPGEIVKPDDFYDYEAKYLDGSAEL 249

Query: 241 HSPV-ISAQDRTEIGETCVKAMKKIDYRGAGTIEFLY-ENGQFYFIEMNT 288
             P  +S +   +I E  +KA K +   G   ++F   E+G+ Y  E+NT
Sbjct: 250 IIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEIYLNEINT 299


>gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase; Provisional.
          Length = 809

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 33/209 (15%)

Query: 102 FIGPSSEHIKIMGDKITAKKTAQQLGIPVVP------GSGEVYPHTAMP-IAKEIGFPVL 154
           + GPS     I  DK+  K+ A  +G+PVVP         +  P   +  I +   FP+ 
Sbjct: 555 YTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGWKREPELCLAHIVEAFSFPMF 614

Query: 155 VKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGD 214
           VK +  G   G+   ++  +L + I    SEA     +  V++E+     R IEV   GD
Sbjct: 615 VKTAHLGSSIGVFEVHNVEELRDKI----SEAFLY--DTDVFVEESRLGSREIEVSCLGD 668

Query: 215 GMGNAIHFGERDCSVQRRNQK---IWEEAH--SPVISAQ-----DRTEIGETCVKAMKKI 264
           G    +  G      +RR       ++E +  S   SAQ     D ++  +  V  + + 
Sbjct: 669 GSSAYVIAGPH----ERRGSGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAER 724

Query: 265 DYR---GAGTIE---FLYENGQFYFIEMN 287
            YR   G G+     FL E G F+  EMN
Sbjct: 725 IYRLLQGKGSCRIDFFLDEEGNFWLSEMN 753


>gnl|CDD|180352 PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase
           subunit; Reviewed.
          Length = 372

 Score = 51.7 bits (125), Expect = 4e-07
 Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 36/189 (19%)

Query: 20  ACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH 79
           A   LG   + +    DS A   ++ADE +        D    ++++   C+V   +   
Sbjct: 20  AAAPLGYKVIVLDPDPDSPA--AQVADEVIVADY----DDVAALRELAEQCDVITYE--- 70

Query: 80  PGYGFLSEN--AKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVP----G 133
               F  EN  A+  + L        GP +  + I  D++T K+   +LGIPV P     
Sbjct: 71  ----F--ENVPAEALDALAARVPVPPGPDA--LAIAQDRLTEKQFLDKLGIPVAPFAVVD 122

Query: 134 SGEVYPHTAMPIAKEIGFPVLVKASAGG-GGRGMRIAYSENDLSEAIDQARSEALAAFGN 192
           S E           ++G P ++K   GG  G+G  +  S  DL          A A  G+
Sbjct: 123 SAE----DLEAALADLGLPAVLKTRRGGYDGKGQWVIRSAEDL--------EAAWALLGS 170

Query: 193 DAVYIEKYL 201
               +E+++
Sbjct: 171 VPCILEEFV 179


>gnl|CDD|167327 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
          Length = 887

 Score = 50.2 bits (120), Expect = 9e-07
 Identities = 54/243 (22%), Positives = 89/243 (36%), Gaps = 40/243 (16%)

Query: 70  CEVTGADAIHPGYGFLSENAKFAEILE--DHHIK----------FIGPSSEHIKIMGDKI 117
            + +  D IH    F+S     A I+   ++ I+              ++E I+   DK 
Sbjct: 53  ADTSDPDRIH---RFVSSLDGVAGIMSSSEYFIEVASEVARRLGLPAANTEAIRTCRDKK 109

Query: 118 TAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSE 177
              +T +  GI V           A+     + +PV+VK   G G  G+R+  S  + + 
Sbjct: 110 RLARTLRDHGIDVPRTHALALRAVALDALDGLTYPVVVKPRMGSGSVGVRLCASVAEAA- 168

Query: 178 AIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAI------HFGERDCSVQR 231
               A   AL   G  A  ++ Y+E   +  V+      G+ +      H G     V  
Sbjct: 169 ----AHCAALRRAGTRAALVQAYVEGDEY-SVETLTVARGHQVLGITRKHLGPPPHFV-- 221

Query: 232 RNQKIWEEAH---SPVISAQDRTEIGETCVKAMKKIDYR-GAGTIEFLYENGQFYFIEMN 287
                 E  H   +P+ + Q R  I  T ++A+  + Y  G    E          IE+N
Sbjct: 222 ------EIGHDFPAPLSAPQ-RERIVRTVLRALDAVGYAFGPAHTELRVRGDTVVIIEIN 274

Query: 288 TRL 290
            RL
Sbjct: 275 PRL 277


>gnl|CDD|130212 TIGR01142, purT, phosphoribosylglycinamide formyltransferase 2.
           This enzyme is an alternative to PurN (TIGR00639).
          Length = 380

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 44/204 (21%), Positives = 88/204 (43%), Gaps = 23/204 (11%)

Query: 4   KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNI 63
           ++L+   GE+   +    + LG+  +AV   A++ AM V  A  S  I       + L+ 
Sbjct: 1   RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQV--AHRSYVI-------NMLDG 51

Query: 64  QQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKT- 122
             + A  E    D I P    ++ +A F    E + +    P++   K+  ++   ++  
Sbjct: 52  DALRAVIEREKPDYIVPEIEAIATDALFELEKEGYFVV---PNARATKLTMNREGIRRLA 108

Query: 123 AQQLGIPVVP----GSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEA 178
           A++LG+P        S +          ++IG+P +VK      G+G  +     D+ +A
Sbjct: 109 AEELGLPTSRYMFADSLDEL----REAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKA 164

Query: 179 IDQARSEALAAFGNDAVYIEKYLE 202
            + A+  A    G   V +E++++
Sbjct: 165 WEYAQEGARG--GAGRVIVEEFID 186


>gnl|CDD|173033 PRK14569, PRK14569, D-alanyl-alanine synthetase A; Provisional.
          Length = 296

 Score = 47.4 bits (112), Expect = 9e-06
 Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 24/229 (10%)

Query: 87  ENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIA 146
           EN + + +LE   IK    S +   I  DK+ +K+      +P        +    +   
Sbjct: 70  ENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAK---FLTDKLVAE 126

Query: 147 KEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRH 206
            EI FPV VK S+GG         S  +L  A ++A            V IE+++   + 
Sbjct: 127 DEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYG-------EVMIEQWVTG-KE 178

Query: 207 IEVQIFGDGMGNAIHFGER----DCSVQRRNQKIWEEAHSPV-ISAQDRTEIGETCVKAM 261
           I V I  D + +++    +    D   +   + I+   HSP  +  Q   E+ +   KA 
Sbjct: 179 ITVAIVNDEVYSSVWIEPQNEFYDYESKYSGKSIY---HSPSGLCEQKELEVRQLAKKAY 235

Query: 262 KKIDYRGAGTIEFLYEN-GQFYFIEMNTRLQVEH----PVTEAITGIDL 305
             +   G   ++F+Y++ G FY +E+N+   +      P + A  G+D 
Sbjct: 236 DLLGCSGHARVDFIYDDRGNFYIMEINSSPGMTDNSLSPKSAAAEGVDF 284


>gnl|CDD|184454 PRK14016, PRK14016, cyanophycin synthetase; Provisional.
          Length = 727

 Score = 45.5 bits (109), Expect = 2e-05
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 112 IMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRI-AY 170
           I  DK   K+     G+PV  G        A   A+EIG+PV+VK   G  GRG+ +   
Sbjct: 211 IACDKELTKRLLAAAGVPVPEGRVVTSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNIT 270

Query: 171 SENDLSEAIDQARSEALAAFGNDAVYIEKYLE 202
           +  ++  A   A  E      +  V +E+Y+ 
Sbjct: 271 TREEIEAAYAVASKE------SSDVIVERYIP 296


>gnl|CDD|177899 PLN02257, PLN02257, phosphoribosylamine--glycine ligase.
          Length = 434

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 43/156 (27%), Positives = 63/156 (40%), Gaps = 32/156 (20%)

Query: 104 GPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGG 163
           GPS+E   + G K   K    +  IP         P  A    KE G P++VKA     G
Sbjct: 91  GPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDPAAAKKYIKEQGAPIVVKADGLAAG 150

Query: 164 RGMRIAYSENDLSEAIDQARSEALAAFGN--DAVYIEKYLENPRHIEVQIFG--DGMGNA 219
           +G+ +A +  +  EA+D    +   AFG+    V +E++L+     E   F   DG  NA
Sbjct: 151 KGVVVAMTLEEAYEAVDSMLVK--GAFGSAGSEVVVEEFLDGE---EASFFALVDG-ENA 204

Query: 220 IHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGE 255
           I                      P+ SAQD   +G+
Sbjct: 205 I----------------------PLESAQDHKRVGD 218


>gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX.  The family
           of proteins found in this equivalog include the
           characterized LysX from Thermus thermophilus which is
           part of a well-organized lysine biosynthesis gene
           cluster. LysX is believed to carry out an ATP-dependent
           acylation of the amino group of alpha-aminoadipate in
           the prokaryotic version of the fungal AAA lysine
           biosynthesis pathway. No species having a sequence in
           this equivalog contains the elements of the more common
           diaminopimelate lysine biosythesis pathway, and none has
           been shown to be a lysine auxotroph. These sequences
           have mainly recieved the name of the related enzyme,
           "ribosomal protein S6 modification protein RimK". RimK
           has been characterized in E. coli, and acts by
           ATP-dependent condensation of S6 with glutamate
           residues.
          Length = 280

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 6/132 (4%)

Query: 92  AEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVY-PHTAMPIAKEIG 150
           A +LE   +  I  S   I+  GDKI       + G+P  P +   +    A+ +A+ +G
Sbjct: 65  ARLLEALGVPVINSSHV-IEACGDKIFTYLKLAKAGVPT-PRTYLAFDREAALKLAEALG 122

Query: 151 FPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENP-RHIEV 209
           +PV++K   G  GR + +   +++L   ++    E L    +   YI++Y+  P R I V
Sbjct: 123 YPVVLKPVIGSWGRLVALIRDKDELESLLEH--KEVLGGSQHKLFYIQEYINKPGRDIRV 180

Query: 210 QIFGDGMGNAIH 221
            + GD    AI+
Sbjct: 181 FVIGDEAIAAIY 192


>gnl|CDD|173034 PRK14570, PRK14570, D-alanyl-alanine synthetase A; Provisional.
          Length = 364

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 23/158 (14%)

Query: 145 IAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENP 204
           I + +G+PV+VK +  G   G+ +AY+EN + + I++A    L       V IEK++E  
Sbjct: 166 IKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKYDL------TVVIEKFIE-A 218

Query: 205 RHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPV--------ISAQDRT----E 252
           R IE  + G+        GE    VQ      ++  +S +        I A   T    +
Sbjct: 219 REIECSVIGNEQIKIFTPGE--IVVQDFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHLLD 276

Query: 253 IGETCVKAMKKIDYRGAGTIEFLYE--NGQFYFIEMNT 288
           I E      K ++ RG   I+FL E   G  Y  E+NT
Sbjct: 277 IKEYAFLTYKNLELRGMARIDFLIEKDTGLIYLNEINT 314


>gnl|CDD|184328 PRK13790, PRK13790, phosphoribosylamine--glycine ligase;
           Provisional.
          Length = 379

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 92  AEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGF 151
           A+IL  +  K  GP+ +  +I G K+ AKK  ++  IP            A+   +    
Sbjct: 44  ADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCEL 103

Query: 152 PVLVKASAGGGGRGMRIAYSENDLSEAIDQA-RSEALAAFGNDAVYIEKYLE 202
           PV+VK      G+G+ IA +      AI+     E         V  E +LE
Sbjct: 104 PVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEE-----EGTVVFETFLE 150


>gnl|CDD|184751 PRK14571, PRK14571, D-alanyl-alanine synthetase A; Provisional.
          Length = 299

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 19/214 (8%)

Query: 82  YGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHT 141
           +G   E+     IL+   I++ G  +    I  DK+   +  +  G   +P   E+    
Sbjct: 62  HGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK--GTVEIPDFVEIKEFM 119

Query: 142 AMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYL 201
                  +G+P +VK    G   G+ I  S+ +   A+     E L  +G  +V +++Y+
Sbjct: 120 ---KTSPLGYPCVVKPRREGSSIGVFICESDEEFQHAL----KEDLPRYG--SVIVQEYI 170

Query: 202 ENPRHIEVQIFGDGMGNAI------HFGERDCSVQRRNQKIWEEAHSPV-ISAQDRTEIG 254
              R + V I     G  +          R      +  K   E   P  ++ ++   + 
Sbjct: 171 PG-REMTVSILETEKGFEVLPILELRPKRRFYDYVAKYTKGETEFILPAPLNPEEERLVK 229

Query: 255 ETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNT 288
           ET +KA  +   RG G ++ ++ +G+FYF+E+NT
Sbjct: 230 ETALKAFVEAGCRGFGRVDGIFSDGRFYFLEINT 263


>gnl|CDD|162681 TIGR02068, cya_phycin_syn, cyanophycin synthetase.  Cyanophycin
           synthesis is analogous to polyhydroxyalkanoic acid (PHA)
           biosynthesis, except that PHA polymers lack nitrogen and
           may be made under nitrogen-limiting conditions.
          Length = 864

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 112 IMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYS 171
           I  DK   K+     G+PV  G+       A   A+++G+PV++K   G  GRG+ I   
Sbjct: 210 IACDKDLTKEILSDAGVPVPEGTVVQSAEDAWEAAQDLGYPVVIKPYDGNHGRGVTINIL 269

Query: 172 ENDLSE-AIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGM 216
             D  E A + A  E+        V +E+++   R   + + G  +
Sbjct: 270 TRDEIESAYEAAVEES------SGVIVERFITG-RDHRLLVVGGKV 308


>gnl|CDD|162082 TIGR00877, purD, phosphoribosylamine--glycine ligase.  This enzyme
           appears as a monofunctional protein in prokaryotes but
           as part of a larger, multidomain protein in eukaryotes.
          Length = 423

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 7/127 (5%)

Query: 92  AEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVY--PHTAMPIAKEI 149
            + LE+  I   GP+ E  ++ G K  AK   ++ GIP      EV+  P  A+   +E 
Sbjct: 81  VDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTA--EYEVFTDPEEALSYIQEK 138

Query: 150 GFP-VLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIE 208
           G P ++VKA     G+G+ +A +  +  +A+++   +       + V IE++L+    + 
Sbjct: 139 GAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGD-AGERVVIEEFLDGE-EVS 196

Query: 209 VQIFGDG 215
           +  F DG
Sbjct: 197 LLAFVDG 203


>gnl|CDD|178534 PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase.
          Length = 577

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 105 PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYP-HTAMPIAKEIGFPVLVKASAGG-G 162
           P S  I+I+ DK   K    + GIP +P   E+    +A       G+P+++K+      
Sbjct: 111 PKSSTIRIIQDKYAQKVHFSKHGIP-LPEFMEIDDLESAEKAGDLFGYPLMLKSRRLAYD 169

Query: 163 GRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKY 200
           GRG  +A +E DLS A+      AL  F    +Y EK+
Sbjct: 170 GRGNAVAKTEEDLSSAV-----AALGGFERG-LYAEKW 201


>gnl|CDD|184750 PRK14568, vanB, D-alanine--D-lactate ligase; Provisional.
          Length = 343

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 59/231 (25%), Positives = 91/231 (39%), Gaps = 45/231 (19%)

Query: 82  YGFLSENAKFAEILEDHHIKFIG---PSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVY 138
           +G L E+     +LE   I ++G    SS    +  DK  A   A+  GI   P    V 
Sbjct: 99  HGKLGEDGAIQGLLELSGIPYVGCDIQSS---ALCMDKSLAYIVAKNAGI-ATPAFWTVT 154

Query: 139 PHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIE 198
                P A  + +PV VK +  G   G+    S ++L  AI+ AR            Y  
Sbjct: 155 ADER-PDAATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQ-----------YDS 202

Query: 199 KYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQ--------KIWEEAH--------S 242
           K L     IE  + G  +G A+     D  V   +Q        +I +E          +
Sbjct: 203 KVL-----IEEAVVGSEVGCAVLGNGADLVVGEVDQIRLSHGFFRIHQENEPEKGSENST 257

Query: 243 PV----ISAQDRTEIGETCVKAMKKIDYRGAGTIE-FLYENGQFYFIEMNT 288
            +    ISA++R+ + ET     + +  RG   ++ FL E+G     E+NT
Sbjct: 258 IIVPADISAEERSRVQETAKAIYRALGCRGLARVDMFLQEDGTVVLNEVNT 308


>gnl|CDD|162031 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family.  This
           family, related to bacterial glutathione synthetases,
           contains at least two different alpha-L-glutamate
           ligases. One is RimK, as in E. coli, which adds
           additional Glu residues to the native Glu-Glu C-terminus
           of ribosomal protein S6, but not to Lys-Glu mutants.
           Most species with a member of this subfamily lack an S6
           homolog ending in Glu-Glu, however. Members in
           Methanococcus jannaschii act instead as a
           tetrahydromethanopterin:alpha-l-glutamate ligase
           (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase
           (MJ1001).
          Length = 277

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 14/136 (10%)

Query: 92  AEILEDHHIKFIGPSSEHIKIMGDKI-TAKKTAQQLGIPVVPGSGEVY-PHTAMPIAKEI 149
           A  LE   +  I  S + I   GDK  T++  A+  G+P  P +G    P  A+ + +EI
Sbjct: 66  ARYLESLGVPVINSS-DAILNAGDKFLTSQLLAKA-GLPQ-PRTGLAGSPEEALKLIEEI 122

Query: 150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDA--VYIEKYLENP--R 205
           GFPV++K   G  GR + +A    D   A  +   E            Y+++Y++ P  R
Sbjct: 123 GFPVVLKPVFGSWGRLVSLA---RDKQAA--ETLLEHFEQLNGPQNLFYVQEYIKKPGGR 177

Query: 206 HIEVQIFGDGMGNAIH 221
            I V + GD +  AI+
Sbjct: 178 DIRVFVVGDEVIAAIY 193


>gnl|CDD|117020 pfam08443, RimK, RimK-like ATP-grasp domain.  This ATP-grasp domain
           is found in the ribosomal S6 modification enzyme RimK.
          Length = 190

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 19/196 (9%)

Query: 114 GDKITAKKTAQQLGIPVVPGSGEV-YPHTAMPIAKEI-GFPVLVKASAGGGGRGMRIAYS 171
            DK  + +   + GIPV P +G    P  A    ++I GFPV+VK+  G  G G+ +A  
Sbjct: 2   RDKAKSHQLLAKHGIPV-PNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAED 60

Query: 172 ENDLSEAIDQARSEALAAFGNDAVYIEKYLENP--RHIEVQIFGDGMGNAIHFGERDCSV 229
           E  L + ++  +         + + +++++     R I   + G  +  AIH    +   
Sbjct: 61  EQSLEQLLEAFKWL------KNQILVQEFIAEAGNRDIRCLVVGGEVVGAIHRQSNEGDF 114

Query: 230 QRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTR 289
            R N      A  P   +Q+  EI     +AM  +D  G   ++           E+N+ 
Sbjct: 115 -RTNLHRGGVA-EPYQLSQEEEEIAIKAAQAM-GLDVLG---VDIFRSKRGLLVCEVNSS 168

Query: 290 LQVEHPVTEAITGIDL 305
             ++    E  TGI++
Sbjct: 169 PGLKG--IERTTGINI 182


>gnl|CDD|184327 PRK13789, PRK13789, phosphoribosylamine--glycine ligase;
           Provisional.
          Length = 426

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 24/114 (21%), Positives = 48/114 (42%)

Query: 89  AKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKE 148
           A FA+   +  I   GP S   ++ G K  AK   ++  IP           +++   + 
Sbjct: 82  AGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLES 141

Query: 149 IGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLE 202
              P+++KA     G+G+ +A  +     A+ +   +       + V IE+++E
Sbjct: 142 EMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFME 195


>gnl|CDD|181759 PRK09288, purT, phosphoribosylglycinamide formyltransferase 2;
           Validated.
          Length = 395

 Score = 36.7 bits (86), Expect = 0.014
 Identities = 44/199 (22%), Positives = 79/199 (39%), Gaps = 43/199 (21%)

Query: 4   KILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNI 63
           ++++   GE+   +    + LG+  +AV   A++ AM V  A  S  I         L+ 
Sbjct: 14  RVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQV--AHRSHVI-------DMLDG 64

Query: 64  QQIVAACEVTGADAIHPGYGFLSENAKFAEI----------LEDHHIKFIGPSSEHIKIM 113
             + A  E    D I P            EI          LE      + P++   ++ 
Sbjct: 65  DALRAVIEREKPDYIVP------------EIEAIATDALVELEKEGFNVV-PTARATRLT 111

Query: 114 GDKITAKKTA-QQLGIPVVP----GS-GEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMR 167
            ++   ++ A ++LG+P  P     S  E+    A    +EIG+P +VK      G+G  
Sbjct: 112 MNREGIRRLAAEELGLPTSPYRFADSLEELR--AA---VEEIGYPCVVKPVMSSSGKGQS 166

Query: 168 IAYSENDLSEAIDQARSEA 186
           +  S  D+ +A + A+   
Sbjct: 167 VVRSPEDIEKAWEYAQEGG 185


>gnl|CDD|179154 PRK00885, PRK00885, phosphoribosylamine--glycine ligase;
           Provisional.
          Length = 420

 Score = 34.3 bits (80), Expect = 0.072
 Identities = 57/246 (23%), Positives = 83/246 (33%), Gaps = 85/246 (34%)

Query: 92  AEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIA--KEI 149
            +      +   GP+    ++ G K  AK    + GIP    + E +      +A   E 
Sbjct: 79  VDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPT--AAYETFTDAEEALAYLDEK 136

Query: 150 GFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALA--AFGN--DAVYIEKYLENPR 205
           G P++VKA     G+G+ +A     L EA      + LA   FG+    V IE++L+   
Sbjct: 137 GAPIVVKADGLAAGKGVVVA---MTLEEAKAAVD-DMLAGNKFGDAGARVVIEEFLDGE- 191

Query: 206 HIEVQIF----------------------GD------GMGNAIHFGERDCSVQRRNQKIW 237
             E   F                      GD      GMG                    
Sbjct: 192 --EASFFAFVDGENVLPLPTAQDHKRAGDGDTGPNTGGMG-------------------- 229

Query: 238 EEAHS--PVISAQD----RTEIGETCVKAMKK--IDYRGAGTIEFLY------ENGQFYF 283
             A+S  PV++ +       EI +  VK M    I Y G      LY      ++G    
Sbjct: 230 --AYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTG-----VLYAGLMITKDGP-KV 281

Query: 284 IEMNTR 289
           IE N R
Sbjct: 282 IEFNAR 287


>gnl|CDD|149489 pfam08442, ATP-grasp_2, ATP-grasp domain. 
          Length = 202

 Score = 32.2 bits (74), Expect = 0.27
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 119 AKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLV-KASAGGGGR----GMRIAYSEN 173
           AK+   + G+PV  G     P  A  IAK++G  V V KA    GGR    G+++A S  
Sbjct: 7   AKEILAKYGVPVPRGEVAFSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKAGGVKLAKSPE 66

Query: 174 DLSEAIDQ 181
           +  EA  +
Sbjct: 67  EAKEAAKE 74


>gnl|CDD|183897 PRK13210, PRK13210, putative L-xylulose 5-phosphate 3-epimerase;
           Reviewed.
          Length = 284

 Score = 31.4 bits (72), Expect = 0.42
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 6/32 (18%)

Query: 253 IGETCV------KAMKKIDYRGAGTIEFLYEN 278
            GE CV      K +K+++YRG   IE   E 
Sbjct: 228 FGEGCVDFVGIFKTLKELNYRGPFLIEMWTEK 259


>gnl|CDD|117914 pfam09372, PRANC, PRANC domain.  This presumed domain is found at
           the C-terminus of a variety of Pox virus proteins. The
           PRANC (Pox proteins Repeats of ANkyrin - C terminal)
           domain is also found on its own in some proteins. The
           function of this domain is unknown, but it appears to be
           related to the F-box domain and may play a similar role.
          Length = 96

 Score = 31.4 bits (72), Expect = 0.45
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 377 YYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIE--GNYDI 434
            Y  +I K+I     R + + +  + +N I+ D     +P+    IK + I+E   N D+
Sbjct: 36  IYGDIIKKIIKKAIERYKLINKAIKVINNILSDSYWNLLPI---EIKYK-ILEYLSNDDL 91

Query: 435 H 435
            
Sbjct: 92  K 92


>gnl|CDD|162159 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit.  This
           family contains a split seen both in a maximum parsimony
           tree (which ignores gaps) and in the gap pattern near
           position 85 of the seed alignment. Eukaryotic and most
           bacterial sequences are longer and contain a region
           similar to TXQTXXXG. Sequences from Deinococcus
           radiodurans, Mycobacterium tuberculosis, Streptomyces
           coelicolor, and the Archaea are 6 amino acids shorter in
           that region and contain a motif resembling [KR]G.
          Length = 386

 Score = 31.2 bits (71), Expect = 0.51
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 12/96 (12%)

Query: 119 AKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIG-FPVLVKASAGGGGR----GMRIAYSEN 173
           AK+   + GIPV  G        A  IA ++G  PV+VKA    GGR    G+++A S+ 
Sbjct: 8   AKQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKE 67

Query: 174 DLSEAIDQARSEALAAFGNDA-------VYIEKYLE 202
           +   A ++   + L     D        + IE+  +
Sbjct: 68  EARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATD 103


>gnl|CDD|128348 smart00033, CH, Calponin homology domain.  Actin binding domains
           present in duplicate at the N-termini of spectrin-like
           proteins (including dystrophin, alpha-actinin). These
           domains cross-link actin filaments into bundles and
           networks. A calponin homology domain is predicted in
           yeasst Cdc24p.
          Length = 103

 Score = 30.7 bits (70), Expect = 0.70
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 6/51 (11%)

Query: 384 KLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLFQKLIKNEDIIEGNYDI 434
           K +    +R + +  +N AL+    + +   + LF+     ED++EGN  I
Sbjct: 49  KKVNASLSRFKKIENINLALS--FAEKLGGKLVLFE----PEDLVEGNKLI 93


>gnl|CDD|173036 PRK14572, PRK14572, D-alanyl-alanine synthetase A; Provisional.
          Length = 347

 Score = 30.6 bits (69), Expect = 0.73
 Identities = 43/227 (18%), Positives = 75/227 (33%), Gaps = 25/227 (11%)

Query: 78  IHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVP----- 132
           +H G G   E+ +    L+   I + G       +  DK  A +   Q G  V P     
Sbjct: 96  LHGGAG---EDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELE 152

Query: 133 -GSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFG 191
                  P   +   + +GFP  +K   GG         +   L   +       L    
Sbjct: 153 KLKYLNSPRKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLA------LIFES 206

Query: 192 NDAVYIEKY----------LENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAH 241
           +  V  + +          LE  R  +           +  GE      +  Q   EE  
Sbjct: 207 DSKVMSQSFLSGTEVSCGVLERYRGGKRNPIALPATEIVPGGEFFDFESKYKQGGSEEIT 266

Query: 242 SPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNT 288
              IS Q+   + E  ++A + +  +G    +F+  +G+ + +E NT
Sbjct: 267 PARISDQEMKRVQELAIRAHESLGCKGYSRTDFIIVDGEPHILETNT 313


>gnl|CDD|172816 PRK14340, PRK14340, (dimethylallyl)adenosine tRNA
           methylthiotransferase; Provisional.
          Length = 445

 Score = 30.9 bits (70), Expect = 0.77
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 152 PVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAF 190
           P L+ A A  G R   + +++++    I+  RS +++AF
Sbjct: 115 PGLI-ADAREGARPAALDFNQSETYAGIEPVRSGSISAF 152


>gnl|CDD|152128 pfam11692, DUF3289, Protein of unknown function (DUF3289).  This
           family of proteins with unknown function appears to be
           restricted to Proteobacteria.
          Length = 277

 Score = 29.7 bits (67), Expect = 1.4
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 378 YDSLIAKLIVHGKNRKECM---MRLNRALNEIII-DGIKTTIPLFQKLIKNEDIIEGNY 432
           Y  LI +LI H +         + LN AL E+I+ D    +  L  K I +  I     
Sbjct: 103 YKHLIGRLIDHMQYGNGAPFRDLLLNAALKEVILGDKTNNSSLLVIKAILDRGIDWDKK 161


>gnl|CDD|173169 PRK14706, PRK14706, glycogen branching enzyme; Provisional.
          Length = 639

 Score = 28.8 bits (64), Expect = 2.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 344 FIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYY 378
           F+    E+T+  APG + I  +S S+ G TVP+ Y
Sbjct: 337 FLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY 371


>gnl|CDD|181664 PRK09129, PRK09129, NADH dehydrogenase subunit G; Validated.
          Length = 776

 Score = 28.3 bits (64), Expect = 4.0
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 6/34 (17%)

Query: 376 SYYDSLIAKLIVHGKNRKECMMRL----NRALNE 405
           S +DSL + L+VH KN +  +MR+    N A+NE
Sbjct: 222 SPHDSLGSNLVVHVKNNR--VMRVVPRENEAVNE 253


>gnl|CDD|183942 PRK13278, purP,
           5-formaminoimidazole-4-carboxamide-1-(beta)-D-
           ribofuranosyl 5'-monophosphate synthetase; Provisional.
          Length = 358

 Score = 28.3 bits (64), Expect = 4.2
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 148 EIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYL 201
           +I  PV+VK     GGRG  IA S  +  E ID+     L     +A  I++Y+
Sbjct: 147 DIDRPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEA-IIQEYV 199


>gnl|CDD|179427 PRK02471, PRK02471, bifunctional glutamate--cysteine
           ligase/glutathione synthetase; Provisional.
          Length = 752

 Score = 28.0 bits (63), Expect = 4.9
 Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 21/140 (15%)

Query: 76  DAIHPGYGF--LSENAKFAEILEDHHIKFIGPSSEHIK-------IMGDKITAKKTAQQL 126
           DAI  G     L E  +F ++ +  H++++   +   K       IM +K+  KK   + 
Sbjct: 440 DAIQRGIQVEILDEQDQFLKLQKGDHVEYVKNGNMTSKDNYISPLIMENKVVTKKILAEA 499

Query: 127 GIPVVPGSGEVY-PHTAMPIAKEI-GFPVLVKASAGGGGRGMRI---AYSENDLSEAIDQ 181
           G P VP   E      A+          ++VK  +   G G+ I     S  D  +A++ 
Sbjct: 500 GFP-VPAGDEFTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEI 558

Query: 182 ARSEALAAFGNDAVYIEKYL 201
           A  E      + +V +E+++
Sbjct: 559 AFRE------DSSVLVEEFI 572


>gnl|CDD|162282 TIGR01279, DPOR_bchN, light-independent protochlorophyllide
           reductase, N subunit.  This enzyme describes the N
           subunit of the dark form protochlorophyllide reductase,
           a nitrogenase-like enzyme involved in
           bacteriochlorophyll biosynthesis. This subunit shows
           homology to the nitrogenase molybdenum-iron protein
           NifN.
          Length = 407

 Score = 28.2 bits (63), Expect = 4.9
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 93  EILEDHHIKFI----GPSSEHIKIMGDKITAKKTAQQLGIPV--VPGSGEVYPHT 141
           +I  D +   I      + E IK M  +  A++ +   G+PV   P SG  Y  T
Sbjct: 78  QIKRDRNPSVIFLLSSCTPEVIK-MDLEGLAERLSTNFGVPVLFAPASGLDYTFT 131


>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase.  Members of this family,
           including sll0033 (crtH) of Synechocystis sp. PCC 6803,
           catalyze a cis-trans isomerization of carotenes to the
           all-trans lycopene, a reaction that can also occur
           non-enzymatically in light through photoisomerization.
          Length = 493

 Score = 27.8 bits (62), Expect = 5.1
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 11/54 (20%)

Query: 345 IPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMR 398
           IP+P +I ++H P GL +++             YD  I +L+    + KE + R
Sbjct: 82  IPDPVQI-HYHLPNGLNVKVHRE----------YDDFIQELVAKFPHEKEGIRR 124


>gnl|CDD|167776 PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.
          Length = 332

 Score = 27.8 bits (62), Expect = 5.9
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)

Query: 99  HIKFIGPSSEHIKIMGDKITAKKTAQQLG 127
           H+ ++GP+      MG K + K TA+ LG
Sbjct: 73  HVTYLGPTGSQ---MGKKESTKDTARVLG 98


>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional.
          Length = 546

 Score = 27.7 bits (61), Expect = 6.0
 Identities = 15/36 (41%), Positives = 18/36 (50%)

Query: 238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIE 273
           E A    ISA    EIG+    AMKK+   G  T+E
Sbjct: 143 EIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVE 178


>gnl|CDD|184474 PRK14046, PRK14046, malate--CoA ligase subunit beta; Provisional.
          Length = 392

 Score = 27.4 bits (61), Expect = 7.8
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 119 AKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPV-LVKASAGGGGRG----MRIAYSEN 173
           AK+     G+ V  G+    P  A+  A+E+G    +VKA    G RG    +++  + N
Sbjct: 8   AKELLASFGVAVPRGALAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYN 67

Query: 174 DLSEA 178
           ++ +A
Sbjct: 68  EVRDA 72


>gnl|CDD|162284 TIGR01282, nifD, nitrogenase molybdenum-iron protein alpha chain.
           Nitrogenase consists of alpha (NifD) and beta (NifK)
           subunits of the molybdenum-iron protein and an
           ATP-binding iron-sulfur protein (NifH). This model
           describes a large clade of NifD proteins, but excludes a
           lineage that contains putative NifD and NifD homologs
           from species with vanadium-dependent nitrogenases.
          Length = 466

 Score = 26.9 bits (60), Expect = 9.5
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 110 IKIMGDKI--TAKKTAQQLGIPVVPGSGEVY 138
           + ++GD I   AKK +++LG PVVP   E +
Sbjct: 144 VGLIGDDIEAVAKKASKELGKPVVPVRCEGF 174


>gnl|CDD|178711 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional.
          Length = 600

 Score = 27.2 bits (60), Expect = 9.6
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 16/73 (21%)

Query: 238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIE---------FLYENGQF------- 281
           E A    +SA +  E+G    +AM K+  +G  T+E         ++ E  QF       
Sbjct: 197 ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISP 256

Query: 282 YFIEMNTRLQVEH 294
           YF+  + ++ VE+
Sbjct: 257 YFVTDSEKMSVEY 269


>gnl|CDD|162690 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine
           methyltransferase.  S-methyltransferase (MetE, EC
           2.1.1.14, the cobalamin-independent methionine synthase)
           and betaine-homocysteine methyltransferase.
          Length = 1178

 Score = 27.0 bits (60), Expect = 9.7
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 104 GPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGG 163
           G + +HI+ + +   A K  +    PV+     +    A+ IA++  F  + + +   G 
Sbjct: 299 GTTPDHIRAIAE---AVKNIKPRQRPVLYEPSRLSGLEAITIAQDSNFVNIGERTNVAGS 355

Query: 164 RGMRIAYSENDLSEAIDQARSE 185
           +  R      D  EA+D A+ +
Sbjct: 356 KKFRRLIIAEDYDEALDIAKQQ 377


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.318    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,434,289
Number of extensions: 496497
Number of successful extensions: 1461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1375
Number of HSP's successfully gapped: 86
Length of query: 443
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 347
Effective length of database: 3,920,105
Effective search space: 1360276435
Effective search space used: 1360276435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.7 bits)