BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus Liberibacter asiaticus str. psy62] (443 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 443 Score = 915 bits (2366), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/443 (100%), Positives = 443/443 (100%) Query: 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY Sbjct: 1 MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60 Query: 61 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK Sbjct: 61 LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120 Query: 121 KTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAID 180 KTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAID Sbjct: 121 KTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAID 180 Query: 181 QARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEA 240 QARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEA Sbjct: 181 QARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEA 240 Query: 241 HSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAI 300 HSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAI Sbjct: 241 HSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAI 300 Query: 301 TGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGL 360 TGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGL Sbjct: 301 TGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGL 360 Query: 361 GIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLFQK 420 GIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLFQK Sbjct: 361 GIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLFQK 420 Query: 421 LIKNEDIIEGNYDIHWLENKYLK 443 LIKNEDIIEGNYDIHWLENKYLK Sbjct: 421 LIKNEDIIEGNYDIHWLENKYLK 443 >gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 1162 Score = 53.9 bits (128), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 42/230 (18%) Query: 90 KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYP-HTAMPIAKE 148 K ++ILE + I +G + I + D+ +K +L + P +G + A IA E Sbjct: 712 KLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQ-PRNGISHSVEHARLIACE 770 Query: 149 IGFPVLVKASAGGGGRGMRIAYSENDLSEAI-----------------DQARSEALAAFG 191 IGFP+L++ S GGR M+I YSEN L + + + + G Sbjct: 771 IGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLG 830 Query: 192 NDAVYIEKYLENPRHIEV-------QIFGDGM-----GNAIHFGERDCSVQRRNQKIWEE 239 + + YL + I+V Q+ G+ IH G+ CS+ R+ Sbjct: 831 THPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRS------ 884 Query: 240 AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTR 289 +S Q + E+ ++ G +++ ++G+ Y +E+N R Sbjct: 885 -----LSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPR 929 Score = 41.6 bits (96), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 17/188 (9%) Query: 148 EIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHI 207 EIG P++++ S GG G IAY+ ++ E ++ L A V IE+ + + Sbjct: 214 EIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVEN----GLHASPTTEVLIEESVLGWKEY 269 Query: 208 EVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHS----PVISAQDR--TEIGETCVKAM 261 E+++ D GN I CS++ + S P ++ D+ + + + Sbjct: 270 ELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVL 325 Query: 262 KKIDYR-GAGTIEFLY--ENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRL 318 K+I G ++F +NG+ IEMN R+ + TG + +A L Sbjct: 326 KEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTL 385 Query: 319 SVQQKDIT 326 DIT Sbjct: 386 DELGNDIT 393 >gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 46.2 bits (108), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 8/113 (7%) Query: 100 IKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASA 159 K GPS K+ K AKK + GIP P A + P++VKA Sbjct: 87 FKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADG 146 Query: 160 GGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIF 212 G+G+ +A + ++ + AID+ + N V IE+YLE EV F Sbjct: 147 LCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEG---FEVSFF 191 >gi|254781179|ref|YP_003065592.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 300 Score = 28.9 bits (63), Expect = 0.16, Method: Compositional matrix adjust. Identities = 45/225 (20%), Positives = 91/225 (40%), Gaps = 26/225 (11%) Query: 76 DAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG 135 + +H +G E+ ILE I + + DK+ +K+ G+PV P Sbjct: 56 NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 Query: 136 EVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAV 195 + M I P ++K GG G+ + + D S +D +S + D + Sbjct: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI--KKDQSIPLDLLQSSSWNH--GDQL 166 Query: 196 YIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPV---------IS 246 IE+Y++ +++ MG+A + +V + + +E +S + I Sbjct: 167 LIEQYVDG-----IELTCGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 Query: 247 AQDRTEIGETCVKAMKKIDYRGAGTIEFLYE--NGQFYFIEMNTR 289 E+ A + I RG +FL++ + + +++E+N + Sbjct: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 >gi|254780201|ref|YP_003064614.1| hypothetical protein CLIBASIA_00430 [Candidatus Liberibacter asiaticus str. psy62] Length = 394 Score = 26.6 bits (57), Expect = 0.81, Method: Compositional matrix adjust. Identities = 11/35 (31%), Positives = 16/35 (45%) Query: 6 LIANRGEIALRILRACKELGIPTVAVHSTADSGAM 40 A R E+ R++ K G PT +H +G M Sbjct: 296 FFAKRSEVYRRVIDLAKRAGFPTKRLHLDFFNGTM 330 >gi|254780943|ref|YP_003065356.1| glucosamine--fructose-6-phosphate aminotransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 608 Score = 26.2 bits (56), Expect = 1.3, Method: Compositional matrix adjust. Identities = 9/19 (47%), Positives = 14/19 (73%) Query: 250 RTEIGETCVKAMKKIDYRG 268 R +GE KA+K+++YRG Sbjct: 10 RESVGERLFKALKRLEYRG 28 >gi|254780246|ref|YP_003064659.1| 50S ribosomal protein L6 [Candidatus Liberibacter asiaticus str. psy62] Length = 177 Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust. Identities = 13/40 (32%), Positives = 19/40 (47%) Query: 95 LEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGS 134 +EDH IK GP + +M D I+ L + + GS Sbjct: 19 VEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGS 58 >gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 957 Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 25/49 (51%) Query: 79 HPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLG 127 +P + FL EN++ + LED F+ S + K +A +++ LG Sbjct: 42 YPLFSFLDENSEEYDNLEDGIASFLKEESVASAVFSQKKSAVESSCSLG 90 >gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus str. psy62] Length = 700 Score = 24.3 bits (51), Expect = 4.7, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 18/37 (48%) Query: 214 DGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDR 250 D +G+AI R C V R +I E + IS + R Sbjct: 237 DALGSAIRIDARGCEVMRILPRINESINEEWISDKTR 273 >gi|254780499|ref|YP_003064912.1| hypothetical protein CLIBASIA_01930 [Candidatus Liberibacter asiaticus str. psy62] Length = 167 Score = 23.5 bits (49), Expect = 7.4, Method: Compositional matrix adjust. Identities = 8/20 (40%), Positives = 14/20 (70%) Query: 109 HIKIMGDKITAKKTAQQLGI 128 ++K+ D + KK A+QLG+ Sbjct: 22 NLKLKADSLDCKKLAEQLGV 41 >gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 753 Score = 23.1 bits (48), Expect = 8.8, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 4/59 (6%) Query: 144 PIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLE 202 P+ FP L+ G GM + +++ E + A LA N + IEK LE Sbjct: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA----LALIDNPEISIEKLLE 219 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.137 0.399 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 287,289 Number of Sequences: 1233 Number of extensions: 12100 Number of successful extensions: 36 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 12 length of query: 443 length of database: 328,796 effective HSP length: 77 effective length of query: 366 effective length of database: 233,855 effective search space: 85590930 effective search space used: 85590930 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)