BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin
carboxylase subunit [Candidatus Liberibacter asiaticus str. psy62]
         (443 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 443

 Score =  915 bits (2366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/443 (100%), Positives = 443/443 (100%)

Query: 1   MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60
           MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY
Sbjct: 1   MISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSY 60

Query: 61  LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120
           LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK
Sbjct: 61  LNIQQIVAACEVTGADAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAK 120

Query: 121 KTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAID 180
           KTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAID
Sbjct: 121 KTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAID 180

Query: 181 QARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEA 240
           QARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEA
Sbjct: 181 QARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEA 240

Query: 241 HSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAI 300
           HSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAI
Sbjct: 241 HSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAI 300

Query: 301 TGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGL 360
           TGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGL
Sbjct: 301 TGIDLVHEQIYVASENRLSVQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGL 360

Query: 361 GIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLFQK 420
           GIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLFQK
Sbjct: 361 GIRMDSASYQGYTVPSYYDSLIAKLIVHGKNRKECMMRLNRALNEIIIDGIKTTIPLFQK 420

Query: 421 LIKNEDIIEGNYDIHWLENKYLK 443
           LIKNEDIIEGNYDIHWLENKYLK
Sbjct: 421 LIKNEDIIEGNYDIHWLENKYLK 443


>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1162

 Score = 53.9 bits (128), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 42/230 (18%)

Query: 90  KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYP-HTAMPIAKE 148
           K ++ILE + I  +G   + I +  D+   +K   +L +   P +G  +    A  IA E
Sbjct: 712 KLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQ-PRNGISHSVEHARLIACE 770

Query: 149 IGFPVLVKASAGGGGRGMRIAYSENDLSEAI-----------------DQARSEALAAFG 191
           IGFP+L++ S   GGR M+I YSEN L + +                 +    +     G
Sbjct: 771 IGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLG 830

Query: 192 NDAVYIEKYLENPRHIEV-------QIFGDGM-----GNAIHFGERDCSVQRRNQKIWEE 239
              +  + YL +   I+V       Q+   G+        IH G+  CS+  R+      
Sbjct: 831 THPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRS------ 884

Query: 240 AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTR 289
                +S Q + E+          ++  G   +++  ++G+ Y +E+N R
Sbjct: 885 -----LSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPR 929



 Score = 41.6 bits (96), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 17/188 (9%)

Query: 148 EIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHI 207
           EIG P++++ S   GG G  IAY+ ++  E ++      L A     V IE+ +   +  
Sbjct: 214 EIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVEN----GLHASPTTEVLIEESVLGWKEY 269

Query: 208 EVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHS----PVISAQDR--TEIGETCVKAM 261
           E+++  D  GN I      CS++  +        S    P ++  D+    +    +  +
Sbjct: 270 ELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVL 325

Query: 262 KKIDYR-GAGTIEFLY--ENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRL 318
           K+I    G   ++F    +NG+   IEMN R+     +    TG  +      +A    L
Sbjct: 326 KEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTL 385

Query: 319 SVQQKDIT 326
                DIT
Sbjct: 386 DELGNDIT 393


>gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 424

 Score = 46.2 bits (108), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 100 IKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASA 159
            K  GPS    K+   K  AKK   + GIP         P  A    +    P++VKA  
Sbjct: 87  FKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADG 146

Query: 160 GGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIF 212
              G+G+ +A + ++ + AID+   +      N  V IE+YLE     EV  F
Sbjct: 147 LCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEG---FEVSFF 191


>gi|254781179|ref|YP_003065592.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 300

 Score = 28.9 bits (63), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 91/225 (40%), Gaps = 26/225 (11%)

Query: 76  DAIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSG 135
           + +H  +G   E+     ILE   I +         +  DK+ +K+     G+PV P   
Sbjct: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111

Query: 136 EVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAV 195
            +     M     I  P ++K   GG   G+ +   + D S  +D  +S +      D +
Sbjct: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI--KKDQSIPLDLLQSSSWNH--GDQL 166

Query: 196 YIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPV---------IS 246
            IE+Y++      +++    MG+A      + +V + +   +E  +S +         I 
Sbjct: 167 LIEQYVDG-----IELTCGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220

Query: 247 AQDRTEIGETCVKAMKKIDYRGAGTIEFLYE--NGQFYFIEMNTR 289
                E+      A + I  RG    +FL++  + + +++E+N +
Sbjct: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265


>gi|254780201|ref|YP_003064614.1| hypothetical protein CLIBASIA_00430 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 394

 Score = 26.6 bits (57), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 6   LIANRGEIALRILRACKELGIPTVAVHSTADSGAM 40
             A R E+  R++   K  G PT  +H    +G M
Sbjct: 296 FFAKRSEVYRRVIDLAKRAGFPTKRLHLDFFNGTM 330


>gi|254780943|ref|YP_003065356.1| glucosamine--fructose-6-phosphate aminotransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 608

 Score = 26.2 bits (56), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 250 RTEIGETCVKAMKKIDYRG 268
           R  +GE   KA+K+++YRG
Sbjct: 10  RESVGERLFKALKRLEYRG 28


>gi|254780246|ref|YP_003064659.1| 50S ribosomal protein L6 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 177

 Score = 25.8 bits (55), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 95  LEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGS 134
           +EDH IK  GP  +   +M D I+       L +  + GS
Sbjct: 19  VEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGS 58


>gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 957

 Score = 25.4 bits (54), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 79  HPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLG 127
           +P + FL EN++  + LED    F+   S    +   K +A +++  LG
Sbjct: 42  YPLFSFLDENSEEYDNLEDGIASFLKEESVASAVFSQKKSAVESSCSLG 90


>gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 24.3 bits (51), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 214 DGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDR 250
           D +G+AI    R C V R   +I E  +   IS + R
Sbjct: 237 DALGSAIRIDARGCEVMRILPRINESINEEWISDKTR 273


>gi|254780499|ref|YP_003064912.1| hypothetical protein CLIBASIA_01930 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 167

 Score = 23.5 bits (49), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 109 HIKIMGDKITAKKTAQQLGI 128
           ++K+  D +  KK A+QLG+
Sbjct: 22  NLKLKADSLDCKKLAEQLGV 41


>gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 753

 Score = 23.1 bits (48), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 144 PIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLE 202
           P+     FP L+     G   GM  +   +++ E  + A    LA   N  + IEK LE
Sbjct: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA----LALIDNPEISIEKLLE 219


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.137    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 287,289
Number of Sequences: 1233
Number of extensions: 12100
Number of successful extensions: 36
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 12
length of query: 443
length of database: 328,796
effective HSP length: 77
effective length of query: 366
effective length of database: 233,855
effective search space: 85590930
effective search space used: 85590930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)