HHsearch results for GI: 254780269 and protein with PDBid: 3gkr_A

>3gkr_A FEMX; peptidoglycan, hexapeptide, transferase; HET: UDP UM0 UM1 UM2; 1.60A {Lactobacillus viridescens} PDB: 1ne9_A 1p4n_A* 1xix_A 1xf8_A 1xe4_A
Probab=96.26  E-value=0.073  Score=31.56  Aligned_cols=141  Identities=14%  Similarity=0.104  Sum_probs=86.2

Q ss_pred             CCCCEEEEHHHC--------CCCHHHHHHHHC---CCCEEEECCCHHH------HHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             996187424446--------117457765215---8816876698899------99998502668899872699999999
Q gi|254780269|r   15 PLRRGIIPLETF--------HTPKRLKKYIRR---ELYDIRINTAFES------VISACAQKTQKRPTTWINMTIQKAYI   77 (179)
Q Consensus        15 P~~R~il~~~~~--------hisrsLrk~lrk---~~~~itin~~F~~------VI~~Ca~~r~~~~~TWI~~~i~~aY~   77 (179)
                      |.-..+++++..        ..+++.|+.+||   +..+++.....++      +...-.. |  ......+.+..+...
T Consensus       145 ~r~t~~~~l~~~~~~~~~~~~~~~~~R~~irka~k~g~~~~~~~~~~dl~~~~~~~~~~~~-r--~g~~~~~~~~~~~l~  221 (336)
T 3gkr_A          145 PRLNMVLDLTKFPDAKTTLDLYPSKTKSKIKRPFRDGVEVHSGNSATELDEFFKTYTTMAE-R--HGITHRPIEYFQRMQ  221 (336)
T ss_dssp             CSEEEEEEGGGCTTCCSGGGGSCHHHHHHHHHHHHTTEEEEEECSHHHHHHHHHHHHHHHH-H--HTCCCCCHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHH-H--CCCCCCCHHHHHHHH
T ss_conf             3159999888898889999865987899999998759789965872777899999999998-5--366679999999999


Q ss_pred             HHHHCCCEEEEEEEECCCEEEEEEEEEECCCEE---EEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCC-----C--
Q ss_conf             998649826999965372012110232057212---003445257689999999999999689739990758-----9--
Q gi|254780269|r   78 DLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFF---GESMFSHMENASKICLTHLVKHLKKRQFLLLDIQFI-----T--  147 (179)
Q Consensus        78 ~Lh~~G~aHSvE~w~~~~LvGGlyGv~iG~~F~---GESMFs~~~nASKiAl~~L~~~l~~~g~~liD~Q~~-----t--  147 (179)
                      +....+..-=+-++.+|++|||.+.+.-|....   |=|--.....++-+.++...+.+..+|+..+|-.-.     +  
T Consensus       222 ~~~~~~~~~~~~~~~~g~~va~~l~~~~~~~~~~~~~~s~~~~~~~~~~ll~~~~i~~a~~~G~~~~DfgG~~~~~~~~g  301 (336)
T 3gkr_A          222 AAFDADTMRIFVAEREGKLLSTGIALKYGRKIWYMYAGSMDGNTYYAPYAVQSEMIQWALDTNTDLYDLGGIESESTDDS  301 (336)
T ss_dssp             HHSCTTTEEEEEEEETTEEEEEEEEEEETTEEEEEEEEECSSCCTTHHHHHHHHHHHHHHHTTCSEEEEEECSCSSTTCH
T ss_pred             HHCCCCCEEEEEEEECCEEEEEEEEEEECCEEEEEEEEECHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCH
T ss_conf             74678856999997099699999999989999999702155545165599999999999987997998089878889952


Q ss_pred             --HHHHHCCCEEE
Q ss_conf             --34771197983
Q gi|254780269|r  148 --NHLRQFGAIEI  158 (179)
Q Consensus       148 --~HL~slGa~~i  158 (179)
                        ..+.++|+..+
T Consensus       302 l~~FK~~fg~~~~  314 (336)
T 3gkr_A          302 LYVFKHVFVKDAP  314 (336)
T ss_dssp             HHHHHHHHCCSCC
T ss_pred             HHHHHHCCCCCCC
T ss_conf             8998646599975