HHsearch results for GI: 254780269 and protein with PDBid: 3gkr_A
>3gkr_A FEMX; peptidoglycan, hexapeptide, transferase; HET: UDP UM0 UM1 UM2; 1.60A {Lactobacillus viridescens} PDB: 1ne9_A 1p4n_A* 1xix_A 1xf8_A 1xe4_A
Probab=96.26 E-value=0.073 Score=31.56 Aligned_cols=141 Identities=14% Similarity=0.104 Sum_probs=86.2
Q ss_pred CCCCEEEEHHHC--------CCCHHHHHHHHC---CCCEEEECCCHHH------HHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 996187424446--------117457765215---8816876698899------99998502668899872699999999
Q gi|254780269|r 15 PLRRGIIPLETF--------HTPKRLKKYIRR---ELYDIRINTAFES------VISACAQKTQKRPTTWINMTIQKAYI 77 (179)
Q Consensus 15 P~~R~il~~~~~--------hisrsLrk~lrk---~~~~itin~~F~~------VI~~Ca~~r~~~~~TWI~~~i~~aY~ 77 (179)
|.-..+++++.. ..+++.|+.+|| +..+++.....++ +...-.. | ......+.+..+...
T Consensus 145 ~r~t~~~~l~~~~~~~~~~~~~~~~~R~~irka~k~g~~~~~~~~~~dl~~~~~~~~~~~~-r--~g~~~~~~~~~~~l~ 221 (336)
T 3gkr_A 145 PRLNMVLDLTKFPDAKTTLDLYPSKTKSKIKRPFRDGVEVHSGNSATELDEFFKTYTTMAE-R--HGITHRPIEYFQRMQ 221 (336)
T ss_dssp CSEEEEEEGGGCTTCCSGGGGSCHHHHHHHHHHHHTTEEEEEECSHHHHHHHHHHHHHHHH-H--HTCCCCCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHH-H--CCCCCCCHHHHHHHH
T ss_conf 3159999888898889999865987899999998759789965872777899999999998-5--366679999999999
Q ss_pred HHHHCCCEEEEEEEECCCEEEEEEEEEECCCEE---EEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCC-----C--
Q ss_conf 998649826999965372012110232057212---003445257689999999999999689739990758-----9--
Q gi|254780269|r 78 DLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFF---GESMFSHMENASKICLTHLVKHLKKRQFLLLDIQFI-----T-- 147 (179)
Q Consensus 78 ~Lh~~G~aHSvE~w~~~~LvGGlyGv~iG~~F~---GESMFs~~~nASKiAl~~L~~~l~~~g~~liD~Q~~-----t-- 147 (179)
+....+..-=+-++.+|++|||.+.+.-|.... |=|--.....++-+.++...+.+..+|+..+|-.-. +
T Consensus 222 ~~~~~~~~~~~~~~~~g~~va~~l~~~~~~~~~~~~~~s~~~~~~~~~~ll~~~~i~~a~~~G~~~~DfgG~~~~~~~~g 301 (336)
T 3gkr_A 222 AAFDADTMRIFVAEREGKLLSTGIALKYGRKIWYMYAGSMDGNTYYAPYAVQSEMIQWALDTNTDLYDLGGIESESTDDS 301 (336)
T ss_dssp HHSCTTTEEEEEEEETTEEEEEEEEEEETTEEEEEEEEECSSCCTTHHHHHHHHHHHHHHHTTCSEEEEEECSCSSTTCH
T ss_pred HHCCCCCEEEEEEEECCEEEEEEEEEEECCEEEEEEEEECHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCH
T ss_conf 74678856999997099699999999989999999702155545165599999999999987997998089878889952
Q ss_pred --HHHHHCCCEEE
Q ss_conf --34771197983
Q gi|254780269|r 148 --NHLRQFGAIEI 158 (179)
Q Consensus 148 --~HL~slGa~~i 158 (179)
..+.++|+..+
T Consensus 302 l~~FK~~fg~~~~ 314 (336)
T 3gkr_A 302 LYVFKHVFVKDAP 314 (336)
T ss_dssp HHHHHHHHCCSCC
T ss_pred HHHHHHCCCCCCC
T ss_conf 8998646599975