RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780269|ref|YP_003064682.1|
leucyl/phenylalanyl-tRNA--protein transferase [Candidatus Liberibacter
asiaticus str. psy62]
         (179 letters)



>gnl|CDD|32507 COG2360, Aat, Leu/Phe-tRNA-protein transferase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 221

 Score =  220 bits (562), Expect = 2e-58
 Identities = 78/171 (45%), Positives = 104/171 (60%)

Query: 8   QDISWIKPLRRGIIPLETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKTQKRPTTW 67
             + W  P  R ++P + FH  + LKK++R+  Y +R+N AF +VI  CA     R  TW
Sbjct: 44  DPLLWWSPDPRAVLPPDDFHISRSLKKFLRQSPYRVRVNYAFAAVIEGCAATRPPRDGTW 103

Query: 68  INMTIQKAYIDLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMENASKICLT 127
           IN  I++AY  L  MG+AH++E W+ D LVGGLYGV+LG  FFGESMFS   NASKI L 
Sbjct: 104 INDEIREAYHKLHEMGHAHSVEVWQGDELVGGLYGVALGRAFFGESMFSRATNASKIALV 163

Query: 128 HLVKHLKKRQFLLLDIQFITNHLRQFGAIEITHVQYAKLLENALKHPEISF 178
           HLV+HL++  F+L+D Q +  HL   GA EI   +Y   L  A +     F
Sbjct: 164 HLVEHLRRHGFVLIDCQVLNEHLASLGAYEIPRKEYLNYLRRAEQPLPSEF 214


>gnl|CDD|112407 pfam03588, Leu_Phe_trans, Leucyl/phenylalanyl-tRNA protein
           transferase. 
          Length = 173

 Score =  196 bits (500), Expect = 3e-51
 Identities = 72/152 (47%), Positives = 95/152 (62%)

Query: 8   QDISWIKPLRRGIIPLETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKTQKRPTTW 67
             + W  P  R ++P +  H  K LKK +R+  + + I+ AFE+VI  CA K + +  TW
Sbjct: 21  CPLLWWSPDPRAVLPPDEIHISKSLKKTLRQSPFRVTIDYAFEAVIEGCAAKRRNQDGTW 80

Query: 68  INMTIQKAYIDLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMENASKICLT 127
           I    Q+AY  L  MGYAH++E W+ D LVGG+YGV+LG VFFGESMFS   NASKI L 
Sbjct: 81  ITEEFQEAYYKLHTMGYAHSVEVWRGDELVGGIYGVALGRVFFGESMFSRKPNASKIALV 140

Query: 128 HLVKHLKKRQFLLLDIQFITNHLRQFGAIEIT 159
            LV+ L    F L+D Q +  HL++FGA EI 
Sbjct: 141 KLVELLIDHGFELIDCQVLNPHLKRFGAEEIP 172


>gnl|CDD|99980 cd03808, GT1_cap1E_like, This family is most closely related to
          the GT1 family of glycosyltransferases. cap1E in
          Streptococcus pneumoniae is required for the synthesis
          of type 1 capsular polysaccharides..
          Length = 359

 Score = 29.8 bits (68), Expect = 0.46
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 13 IKPLRRGIIPLETFHTPKRLKKYIRRELYDI 43
          I   RRGI P +      RL + +R+E  DI
Sbjct: 53 IPLDRRGINPFKDLKALLRLYRLLRKERPDI 83


>gnl|CDD|147669 pfam05634, DUF794, Arabidopsis thaliana protein of unknown function
           (DUF794).  This family consists of several proteins of
           unknown function from Arabidopsis thaliana.
          Length = 378

 Score = 29.0 bits (65), Expect = 0.75
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 4   SANSQDISWIKPLRRGI-IPLETFHTPKRLKKYIR-RELYDI-RINTAFESVISA 55
           S+ +    W+      + +P+E++H   R  K I+  E +D+ RI    E  I A
Sbjct: 128 SSRNGLHEWVPGSINDVLVPVESYHLFDRFGKRIKHDERFDVPRIPAVLELCIQA 182


>gnl|CDD|38031 KOG2820, KOG2820, KOG2820, FAD-dependent oxidoreductase [General
           function prediction only].
          Length = 399

 Score = 26.5 bits (58), Expect = 4.7
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 68  INMTIQKAYIDLFYMGYAH-TIEAWKKDVLVGGLY-GVSLGAVFFGESMFSHMENASKIC 125
           I+  I+ AY +  YM       E W+      G+      G +  G+     +++ +   
Sbjct: 51  ISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVKLHCGTGLLISGDPERQRLDSVAANL 110

Query: 126 LTHLVKH 132
               + H
Sbjct: 111 KRKGLAH 117


>gnl|CDD|34841 COG5244, NIP100, Dynactin complex subunit involved in mitotic
           spindle partitioning in anaphase B [Cell division and
           chromosome partitioning].
          Length = 669

 Score = 26.3 bits (57), Expect = 5.6
 Identities = 10/51 (19%), Positives = 20/51 (39%)

Query: 23  LETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKTQKRPTTWINMTIQ 73
           LE F + +     ++ ELY  ++   F  +    AQ        ++   I+
Sbjct: 266 LEKFQSLELKVNTLQEELYQNKLLKKFYQIYEPFAQAALSSQLQYLAEVIE 316


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.325    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0650    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,237,621
Number of extensions: 111651
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 9
Length of query: 179
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 91
Effective length of database: 4,362,145
Effective search space: 396955195
Effective search space used: 396955195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.7 bits)