RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780269|ref|YP_003064682.1| leucyl/phenylalanyl-tRNA--protein transferase [Candidatus Liberibacter asiaticus str. psy62] (179 letters) >gnl|CDD|178969 PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed. Length = 233 Score = 251 bits (644), Expect = 6e-68 Identities = 72/177 (40%), Positives = 104/177 (58%), Gaps = 2/177 (1%) Query: 1 MADSANSQDISWIKPLRRGIIPLETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKT 60 + Q I W P R ++P + FH + L+K +R+ + + ++TAF +VI ACA Sbjct: 46 WFS--DGQPILWWSPDPRAVLPPDEFHISRSLRKTLRKSPFRVTVDTAFAAVIRACAAPR 103 Query: 61 QKRPTTWINMTIQKAYIDLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMEN 120 + TWI I +AY++L +G+AH++E W+ LVGGLYGV+LG FFGESMFS + Sbjct: 104 PGQEGTWITPEIIEAYLELHELGHAHSVEVWQGGELVGGLYGVALGRAFFGESMFSRATD 163 Query: 121 ASKICLTHLVKHLKKRQFLLLDIQFITNHLRQFGAIEITHVQYAKLLENALKHPEIS 177 ASK+ L LV+HL++ F L+D Q + HL GA EI ++ LL AL P Sbjct: 164 ASKVALAALVEHLRRHGFKLIDCQVLNPHLASLGAREIPRAEFLALLAQALAQPLPP 220 >gnl|CDD|161987 TIGR00667, aat, leucyl/phenylalanyl-tRNA--protein transferase. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway. This enzyme transfers a Leu or Phe to the amino end of certain proteins to enable degradation. Length = 185 Score = 147 bits (372), Expect = 2e-36 Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 5/157 (3%) Query: 12 WIKPLRRGIIPLETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKTQKRP-TTWINM 70 W R + P E+ H + +K++++R Y + +N AF VI CA RP TWI+ Sbjct: 28 WSPDPRAVLWP-ESLHIARSMKRFLKRSPYRVSVNYAFGQVIEGCASD---RPEGTWISD 83 Query: 71 TIQKAYIDLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMENASKICLTHLV 130 + +AY L +G+AH+ E W+ D LVGG+YG++ G +F GESMFS M NASK L Sbjct: 84 ELVEAYHRLHELGHAHSFEVWQGDELVGGMYGIAQGGLFCGESMFSRMTNASKTALLVFC 143 Query: 131 KHLKKRQFLLLDIQFITNHLRQFGAIEITHVQYAKLL 167 +H + L+D Q HL GA E+ Y K L Sbjct: 144 EHFIRHGGQLIDCQVQNPHLASLGAYEVPRKDYLKAL 180 >gnl|CDD|150631 pfam09980, DUF2214, Predicted membrane protein (DUF2214). This domain, found in various hypothetical bacterial proteins, has no known function. Length = 150 Score = 28.0 bits (63), Expect = 1.5 Identities = 11/31 (35%), Positives = 18/31 (58%) Query: 10 ISWIKPLRRGIIPLETFHTPKRLKKYIRREL 40 I W PLR+G P+ + KR+++ + EL Sbjct: 101 IRWRIPLRKGPAPVVSIGLAKRVRRIVNIEL 131 >gnl|CDD|179858 PRK04523, PRK04523, N-acetylornithine carbamoyltransferase; Reviewed. Length = 335 Score = 27.4 bits (61), Expect = 2.0 Identities = 10/29 (34%), Positives = 15/29 (51%) Query: 86 HTIEAWKKDVLVGGLYGVSLGAVFFGESM 114 A+K++ L L G S+ VFF S+ Sbjct: 22 TQAAAFKRNKLGSALKGKSIALVFFNPSL 50 >gnl|CDD|178858 PRK00093, PRK00093, GTP-binding protein Der; Reviewed. Length = 435 Score = 27.3 bits (62), Expect = 2.3 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 14/63 (22%) Query: 27 HTPKRLKKYIRRELYDI--------------RINTAFESVISACAQKTQKRPTTWINMTI 72 T + KK +RR L + ++ E++ A ++ T+ +N + Sbjct: 300 KTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANRRISTSVLNRVL 359 Query: 73 QKA 75 ++A Sbjct: 360 EEA 362 >gnl|CDD|163343 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. Length = 429 Score = 27.4 bits (62), Expect = 2.3 Identities = 8/60 (13%), Positives = 24/60 (40%), Gaps = 14/60 (23%) Query: 30 KRLKKYIRRELYDI--------------RINTAFESVISACAQKTQKRPTTWINMTIQKA 75 + KK +RR+L + ++ +++ ++ T+ +N +++A Sbjct: 303 EEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRISTSKLNRVLEEA 362 >gnl|CDD|162175 TIGR01051, topA_bact, DNA topoisomerase I, bacterial. This model describes DNA topoisomerase I among the members of bacteria. DNA topoisomerase I transiently cleaves one DNA strand and thus relaxes negatively supercoiled DNA during replication, transcription and recombination events. Length = 610 Score = 26.6 bits (59), Expect = 3.4 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 9/45 (20%) Query: 2 ADSANSQDISWIKPLRRGIIPLETFHTPKRLKKYIRRE---LYDI 43 + N+Q+ I P F TP+ LK Y++R+ LY++ Sbjct: 334 SKEKNAQEA------HEAIRPTSVFRTPEELKDYLKRDEFRLYEL 372 >gnl|CDD|162095 TIGR00895, 2A0115, benzoate transport. Length = 398 Score = 26.2 bits (58), Expect = 4.5 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 8/43 (18%) Query: 77 IDLFYMGYA--HTIEAWKKD------VLVGGLYGVSLGAVFFG 111 DL MG+A W D + GL G++ GA+FFG Sbjct: 31 YDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFG 73 >gnl|CDD|177939 PLN02304, PLN02304, probable pectinesterase. Length = 379 Score = 25.6 bits (56), Expect = 6.7 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 9/54 (16%) Query: 47 TAFESVISACAQKTQKRPTTWINMTI---------QKAYIDLFYMGYAHTIEAW 91 T +S + A +QKR WIN I K I G+ T AW Sbjct: 88 TTVQSAVDAVGNFSQKRNVIWINSGIYYEKVTVPKTKPNITFQGQGFDSTAIAW 141 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.325 0.138 0.415 Gapped Lambda K H 0.267 0.0869 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,958,521 Number of extensions: 174633 Number of successful extensions: 435 Number of sequences better than 10.0: 1 Number of HSP's gapped: 434 Number of HSP's successfully gapped: 15 Length of query: 179 Length of database: 5,994,473 Length adjustment: 87 Effective length of query: 92 Effective length of database: 4,114,577 Effective search space: 378541084 Effective search space used: 378541084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 54 (24.3 bits)