RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780269|ref|YP_003064682.1|
leucyl/phenylalanyl-tRNA--protein transferase [Candidatus Liberibacter
asiaticus str. psy62]
(179 letters)
>gnl|CDD|178969 PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase;
Reviewed.
Length = 233
Score = 251 bits (644), Expect = 6e-68
Identities = 72/177 (40%), Positives = 104/177 (58%), Gaps = 2/177 (1%)
Query: 1 MADSANSQDISWIKPLRRGIIPLETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKT 60
+ Q I W P R ++P + FH + L+K +R+ + + ++TAF +VI ACA
Sbjct: 46 WFS--DGQPILWWSPDPRAVLPPDEFHISRSLRKTLRKSPFRVTVDTAFAAVIRACAAPR 103
Query: 61 QKRPTTWINMTIQKAYIDLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMEN 120
+ TWI I +AY++L +G+AH++E W+ LVGGLYGV+LG FFGESMFS +
Sbjct: 104 PGQEGTWITPEIIEAYLELHELGHAHSVEVWQGGELVGGLYGVALGRAFFGESMFSRATD 163
Query: 121 ASKICLTHLVKHLKKRQFLLLDIQFITNHLRQFGAIEITHVQYAKLLENALKHPEIS 177
ASK+ L LV+HL++ F L+D Q + HL GA EI ++ LL AL P
Sbjct: 164 ASKVALAALVEHLRRHGFKLIDCQVLNPHLASLGAREIPRAEFLALLAQALAQPLPP 220
>gnl|CDD|161987 TIGR00667, aat, leucyl/phenylalanyl-tRNA--protein transferase. The
N-terminal residue controls the biological half-life of
many proteins via the N-end rule pathway. This enzyme
transfers a Leu or Phe to the amino end of certain
proteins to enable degradation.
Length = 185
Score = 147 bits (372), Expect = 2e-36
Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 5/157 (3%)
Query: 12 WIKPLRRGIIPLETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKTQKRP-TTWINM 70
W R + P E+ H + +K++++R Y + +N AF VI CA RP TWI+
Sbjct: 28 WSPDPRAVLWP-ESLHIARSMKRFLKRSPYRVSVNYAFGQVIEGCASD---RPEGTWISD 83
Query: 71 TIQKAYIDLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMENASKICLTHLV 130
+ +AY L +G+AH+ E W+ D LVGG+YG++ G +F GESMFS M NASK L
Sbjct: 84 ELVEAYHRLHELGHAHSFEVWQGDELVGGMYGIAQGGLFCGESMFSRMTNASKTALLVFC 143
Query: 131 KHLKKRQFLLLDIQFITNHLRQFGAIEITHVQYAKLL 167
+H + L+D Q HL GA E+ Y K L
Sbjct: 144 EHFIRHGGQLIDCQVQNPHLASLGAYEVPRKDYLKAL 180
>gnl|CDD|150631 pfam09980, DUF2214, Predicted membrane protein (DUF2214). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 150
Score = 28.0 bits (63), Expect = 1.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 10 ISWIKPLRRGIIPLETFHTPKRLKKYIRREL 40
I W PLR+G P+ + KR+++ + EL
Sbjct: 101 IRWRIPLRKGPAPVVSIGLAKRVRRIVNIEL 131
>gnl|CDD|179858 PRK04523, PRK04523, N-acetylornithine carbamoyltransferase;
Reviewed.
Length = 335
Score = 27.4 bits (61), Expect = 2.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 86 HTIEAWKKDVLVGGLYGVSLGAVFFGESM 114
A+K++ L L G S+ VFF S+
Sbjct: 22 TQAAAFKRNKLGSALKGKSIALVFFNPSL 50
>gnl|CDD|178858 PRK00093, PRK00093, GTP-binding protein Der; Reviewed.
Length = 435
Score = 27.3 bits (62), Expect = 2.3
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 14/63 (22%)
Query: 27 HTPKRLKKYIRRELYDI--------------RINTAFESVISACAQKTQKRPTTWINMTI 72
T + KK +RR L + ++ E++ A ++ T+ +N +
Sbjct: 300 KTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANRRISTSVLNRVL 359
Query: 73 QKA 75
++A
Sbjct: 360 EEA 362
>gnl|CDD|163343 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA. EngA
(YfgK, Der) is a ribosome-associated essential GTPase
with a duplication of its GTP-binding domain. It is
broadly to universally distributed among bacteria. It
appears to function in ribosome biogenesis or stability.
Length = 429
Score = 27.4 bits (62), Expect = 2.3
Identities = 8/60 (13%), Positives = 24/60 (40%), Gaps = 14/60 (23%)
Query: 30 KRLKKYIRRELYDI--------------RINTAFESVISACAQKTQKRPTTWINMTIQKA 75
+ KK +RR+L + ++ +++ ++ T+ +N +++A
Sbjct: 303 EEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRISTSKLNRVLEEA 362
>gnl|CDD|162175 TIGR01051, topA_bact, DNA topoisomerase I, bacterial. This model
describes DNA topoisomerase I among the members of
bacteria. DNA topoisomerase I transiently cleaves one
DNA strand and thus relaxes negatively supercoiled DNA
during replication, transcription and recombination
events.
Length = 610
Score = 26.6 bits (59), Expect = 3.4
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 2 ADSANSQDISWIKPLRRGIIPLETFHTPKRLKKYIRRE---LYDI 43
+ N+Q+ I P F TP+ LK Y++R+ LY++
Sbjct: 334 SKEKNAQEA------HEAIRPTSVFRTPEELKDYLKRDEFRLYEL 372
>gnl|CDD|162095 TIGR00895, 2A0115, benzoate transport.
Length = 398
Score = 26.2 bits (58), Expect = 4.5
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 77 IDLFYMGYA--HTIEAWKKD------VLVGGLYGVSLGAVFFG 111
DL MG+A W D + GL G++ GA+FFG
Sbjct: 31 YDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFG 73
>gnl|CDD|177939 PLN02304, PLN02304, probable pectinesterase.
Length = 379
Score = 25.6 bits (56), Expect = 6.7
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 47 TAFESVISACAQKTQKRPTTWINMTI---------QKAYIDLFYMGYAHTIEAW 91
T +S + A +QKR WIN I K I G+ T AW
Sbjct: 88 TTVQSAVDAVGNFSQKRNVIWINSGIYYEKVTVPKTKPNITFQGQGFDSTAIAW 141
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.325 0.138 0.415
Gapped
Lambda K H
0.267 0.0869 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,958,521
Number of extensions: 174633
Number of successful extensions: 435
Number of sequences better than 10.0: 1
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 15
Length of query: 179
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 92
Effective length of database: 4,114,577
Effective search space: 378541084
Effective search space used: 378541084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.3 bits)