RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780269|ref|YP_003064682.1|
leucyl/phenylalanyl-tRNA--protein transferase [Candidatus Liberibacter
asiaticus str. psy62]
         (179 letters)



>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase;
           aminoacyl-tRNA, protein degradation, structural
           genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli}
           (A:79-256)
          Length = 178

 Score =  200 bits (510), Expect = 1e-52
 Identities = 56/157 (35%), Positives = 78/157 (49%), Gaps = 2/157 (1%)

Query: 18  RGIIPLETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKTQKRPTTWINMTIQKAYI 77
           R ++  E+ H  +  K++ +R  Y +  N AF  VI  CA    +   TWI   + +AY 
Sbjct: 3   RAVLWPESLHISRSXKRFHKRSPYRVTXNYAFGQVIEGCAS--DREEGTWITRGVVEAYH 60

Query: 78  DLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMENASKICLTHLVKHLKKRQ 137
            L  +G+AH+IE W++D LVGG YGV+ G +F GES FS  ENASK  L    +      
Sbjct: 61  RLHELGHAHSIEVWREDELVGGXYGVAQGTLFCGESXFSRXENASKTALLVFCEEFIGHG 120

Query: 138 FLLLDIQFITNHLRQFGAIEITHVQYAKLLENALKHP 174
             L+D Q + +H    GA EI    Y   L       
Sbjct: 121 GKLIDCQVLNDHTASLGACEIPRRDYLNYLNQXRLGR 157


>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A
           {Escherichia coli} PDB: 3crc_A* (A:1-106)
          Length = 106

 Score = 25.2 bits (55), Expect = 5.8
 Identities = 7/38 (18%), Positives = 15/38 (39%)

Query: 139 LLLDIQFITNHLRQFGAIEITHVQYAKLLENALKHPEI 176
           LL  + F     ++ G  +   +  A   +   +HP +
Sbjct: 64  LLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHV 101


>3eph_A TRNA isopentenyltransferase; transferase, alternative
           initiation, ATP-binding, cytoplasm, mitochondrion,
           nucleotide-binding, nucleus; 2.95A {Saccharomyces
           cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
           (A:1-111,A:185-343)
          Length = 270

 Score = 25.0 bits (54), Expect = 6.7
 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 42  DIRINTAFESVISACAQKTQKRPTTWINMTIQKAYIDLFYMGYAHTIEAWKKDVL 96
            +++    E + +   Q   KR   WI   +        Y+  A  +  W  +  
Sbjct: 190 TVKLEDCIERMKTRTRQYA-KRQVKWIKKMLIPDIKGDIYLLDATDLSQWDTNAS 243


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.325    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,358,557
Number of extensions: 55895
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 7
Length of query: 179
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 96
Effective length of database: 2,150,234
Effective search space: 206422464
Effective search space used: 206422464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.0 bits)