RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780269|ref|YP_003064682.1|
leucyl/phenylalanyl-tRNA--protein transferase [Candidatus Liberibacter
asiaticus str. psy62]
(179 letters)
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA,
protein degradation, structural genomics, NPPSFA; HET:
MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB:
2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A*
2z3p_A*
Length = 256
Score = 193 bits (492), Expect = 2e-50
Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 4/174 (2%)
Query: 1 MADSANSQDISWIKPLRRGIIPLETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKT 60
I W P R ++ E+ H + +K++ +R Y + +N AF VI C +
Sbjct: 66 WFSP--GDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGC--AS 121
Query: 61 QKRPTTWINMTIQKAYIDLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMEN 120
+ TWI + +AY L +G+AH+IE W++D LVGG+YGV+ G +F GESMFS MEN
Sbjct: 122 DREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMEN 181
Query: 121 ASKICLTHLVKHLKKRQFLLLDIQFITNHLRQFGAIEITHVQYAKLLENALKHP 174
ASK L + L+D Q + +H GA EI Y L
Sbjct: 182 ASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGR 235
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.5 bits (73), Expect = 0.052
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 28/114 (24%)
Query: 86 HTIEAWKKDVLV-GGLYG-------------VSLGAVFFGESMFSHMENASKIC--LTHL 129
H+ E+W + V G + G ++ G G FS E A + LT
Sbjct: 655 HS-ESWANQLTVCGAIIGWTRGTGLMSANNIIAEGIEKMGVRTFSQKEMAFNLLGLLTPE 713
Query: 130 VKHLKKRQFLLLDI----QFITNHLRQFGA------IEITHVQYAKLLENALKH 173
V L ++ ++ D+ QF+ L++F A +E + V+ A +E AL+H
Sbjct: 714 VVELCQKSPVMADLNGGLQFVP-ELKEFTAKLRKELVETSEVRKAVSIETALEH 766
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 29.5 bits (66), Expect = 0.48
Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 61/183 (33%)
Query: 9 DI-SWIK------------------PLRRGIIPLE----TFH----TPKRLKKYIRRELY 41
+I W++ PL G+I L T TP L+ Y++
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLI-GVIQLAHYVVTAKLLGFTPGELRSYLK---- 268
Query: 42 DIRINTAFES--VISACAQKTQKRPTTW--INMTIQKAYIDLFYMGY-AHTIEAWKKDVL 96
S +++A A +W ++++KA LF++G + EA+ L
Sbjct: 269 ----GATGHSQGLVTAVAIAET---DSWESFFVSVRKAITVLFFIGVRCY--EAYPNTSL 319
Query: 97 VGGLYGVSLGAVFFGESMFSHMENASKICLTHLVKHLKKRQFLLLDIQFITN-HLRQFGA 155
+ SL E + S M + S + + ++ K TN HL
Sbjct: 320 PPSILEDSLEN---NEGVPSPMLSISNLTQEQVQDYVNK-----------TNSHLPAGKQ 365
Query: 156 IEI 158
+EI
Sbjct: 366 VEI 368
Score = 27.2 bits (60), Expect = 2.0
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 17/61 (27%)
Query: 119 ENASKICLTHLVKHLKKRQFLLLDIQFITNHLRQFGAIEITHVQYAKLLENALKHPEISF 178
E + LV +FL ++++ + Q+ ++L L E +
Sbjct: 53 EPTTPA---ELVG-----KFL----GYVSSLVE-----PSKVGQFDQVLNLCLTEFENCY 95
Query: 179 L 179
L
Sbjct: 96 L 96
Score = 26.4 bits (58), Expect = 3.9
Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 17/61 (27%)
Query: 38 RELYDIRINTAF-ESVISACAQKTQ---KRPTTWINMTIQKAYIDLFYMGYAHTIEAWKK 93
R+LY +I A+ + +F G I W +
Sbjct: 174 RDLYQTY--HVLVGDLIKFSAETLSELIRTTLDA---------EKVFTQGL--NILEWLE 220
Query: 94 D 94
+
Sbjct: 221 N 221
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural genomics, NPPSFA; 2.05A {Aquifex
aeolicus VF5} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 26.0 bits (57), Expect = 5.5
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 30 KRLKKYIRRELYDIRINTAFESVISA 55
++L++ I R+L+++ I A + A
Sbjct: 518 EKLRETIPRQLFEVHIQVAKGGKVIA 543
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin
A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB:
2iv3_A*
Length = 342
Score = 25.5 bits (54), Expect = 6.5
Identities = 10/80 (12%), Positives = 25/80 (31%)
Query: 15 PLRRGIIPLETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKTQKRPTTWINMTIQK 74
P R + + P+ +++++R D+ + + + A ++ T
Sbjct: 59 PAGRPGLTVVPAGEPEEIERWLRTADVDVVHDHSGGVIGPAGLPPGTAFISSHHFTTRPV 118
Query: 75 AYIDLFYMGYAHTIEAWKKD 94
+ Y A D
Sbjct: 119 NPVGCTYSSRAQRAHCGGGD 138
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI,
protein structure initiative; HET: IPE; 2.00A
{Caulobacter crescentus}
Length = 345
Score = 25.4 bits (55), Expect = 8.2
Identities = 7/57 (12%), Positives = 18/57 (31%)
Query: 117 HMENASKICLTHLVKHLKKRQFLLLDIQFITNHLRQFGAIEITHVQYAKLLENALKH 173
+ + + + +R+ D + + GA++ T A + A
Sbjct: 264 AIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAA 320
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics,
PSI-2, protein structure initiative; 1.90A {Rhodobacter
capsulatus}
Length = 341
Score = 25.0 bits (54), Expect = 9.4
Identities = 8/57 (14%), Positives = 20/57 (35%)
Query: 117 HMENASKICLTHLVKHLKKRQFLLLDIQFITNHLRQFGAIEITHVQYAKLLENALKH 173
+ A + + ++K D++ + + G +E T + + A K
Sbjct: 252 AVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKA 308
>1cru_A Protein (soluble quinoprotein glucose dehydrogenase);
beta-propeller, superbarrel; HET: PQQ; 1.50A
{Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB:
1c9u_A* 1cq1_A* 1qbi_A
Length = 454
Score = 25.0 bits (53), Expect = 9.8
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 80 FYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGE 112
Y G I W+ +LV L + +
Sbjct: 356 VYKGGKKAITGWENTLLVPSLKRGVIFRIKLDP 388
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.325 0.138 0.415
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,558,176
Number of extensions: 66082
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 13
Length of query: 179
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 93
Effective length of database: 3,608,246
Effective search space: 335566878
Effective search space used: 335566878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.7 bits)