RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780269|ref|YP_003064682.1|
leucyl/phenylalanyl-tRNA--protein transferase [Candidatus Liberibacter
asiaticus str. psy62]
         (179 letters)



>d2cxaa1 d.108.1.6 (A:1-232) Leucyl/phenylalanyl-tRNA-protein
           transferase, LFTR (Aat) {Escherichia coli [TaxId: 562]}
          Length = 232

 Score =  190 bits (483), Expect = 8e-50
 Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 4/174 (2%)

Query: 1   MADSANSQDISWIKPLRRGIIPLETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKT 60
                    I W  P  R ++  E+ H  + +K++ +R  Y + +N AF  VI  C   +
Sbjct: 49  WFSP--GDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGC--AS 104

Query: 61  QKRPTTWINMTIQKAYIDLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMEN 120
            +   TWI   + +AY  L  +G+AH+IE W++D LVGG+YGV+ G +F GESMFS MEN
Sbjct: 105 DREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMEN 164

Query: 121 ASKICLTHLVKHLKKRQFLLLDIQFITNHLRQFGAIEITHVQYAKLLENALKHP 174
           ASK  L    +        L+D Q + +H    GA EI    Y   L       
Sbjct: 165 ASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGR 218


>d1a9xb1 c.8.3.1 (B:1502-1652) Carbamoyl phosphate synthetase, small
           subunit N-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 151

 Score = 26.1 bits (57), Expect = 2.0
 Identities = 26/116 (22%), Positives = 36/116 (31%), Gaps = 11/116 (9%)

Query: 70  MT-IQKAYIDLFYMGYAHTI-EAWKKDVLVGGLYGVSLGAVFFGESMFSHMENASKICLT 127
           MT  Q+   D  Y     T+      +V        S      G  +      AS    T
Sbjct: 35  MTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNT 94

Query: 128 HLVKHLKKRQFL----LLDIQFITNHLRQFGAIE--ITHVQY---AKLLENALKHP 174
             +    KR  +     +D + +T  LR+ GA    I        A  LE A   P
Sbjct: 95  EDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFP 150


>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase
           {Acinetobacter calcoaceticus [TaxId: 471]}
          Length = 450

 Score = 25.8 bits (55), Expect = 2.3
 Identities = 7/33 (21%), Positives = 11/33 (33%)

Query: 80  FYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGE 112
            Y G    I  W+  +LV  L    +  +    
Sbjct: 356 VYKGGKKAITGWENTLLVPSLKRGVIFRIKLDP 388


>d1fsga_ c.61.1.1 (A:) Hypoxanthine-guanine-xanthine PRTase
          {Toxoplasma gondii [TaxId: 5811]}
          Length = 233

 Score = 24.5 bits (53), Expect = 5.2
 Identities = 6/21 (28%), Positives = 8/21 (38%)

Query: 22 PLETFHTPKRLKKYIRRELYD 42
            + F  P   K YI + L  
Sbjct: 31 NADDFLVPPHCKPYIDKILLP 51


>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain
          {Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
          Length = 690

 Score = 23.7 bits (51), Expect = 9.7
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 27 HTPKRLKKYIRRELYDIR 44
           TP  L +Y   EL  +R
Sbjct: 4  ETPAPLVEYREEELKSLR 21


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 678,814
Number of extensions: 29448
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 7
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.4 bits)