HHsearch alignment for GI: 254780270 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=99.82 E-value=1.5e-16 Score=144.12 Aligned_cols=260 Identities=21% Similarity=0.347 Sum_probs=200.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-CCCCCCC--EEEEECCCCCCHHHHH
Q ss_conf 9999876540415876632210-6889987766520116899999999999984-2444673--5998605656502799
Q gi|254780270|r 308 VRNYLDWLLGVPWDKKSKTKKN-LDFAIRILDQDHFGLEKVKERIIEYLAVQMR-VIKNKGL--ILCFVGPPGVGKTSLA 383 (820)
Q Consensus 308 ~r~Yld~~~~lPW~~~t~~~~d-l~~a~~iLd~~hyGl~~vK~rile~lav~~~-~~~~~g~--il~l~gppgvGKts~~ 383 (820)
T Consensus 477 I~~vvs~~tgiPv~~~~~~e~~~l~~le~~L~~~ViGQd~AI~~vs~ai~rsraGl~~~~rPigsFlf~GPTGvGKTElA 556 (823)
T CHL00095 477 IAEIVSAWTGIPVNKLTKSESEKLIHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFCGPTGVGKTELT 556 (823)
T ss_pred HHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHH
T ss_conf 99999998689847633458899987888787784076999999999999997089989997468998789988779999
Q ss_pred HHHHHHH---CCCEEEEECCCCCC---HHHHCCCCCCCCCCCC-HHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHH
Q ss_conf 9999770---88249986188888---8883563200145671-289999983278873999933155423117711556
Q gi|254780270|r 384 QSIAKAT---GRQYVRMSLGGVYD---EADIRGHRRTYIGSMP-GRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAA 456 (820)
Q Consensus 384 ~sia~al---~r~f~~islgg~~d---~~~i~gh~~ty~ga~p-g~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~a 456 (820)
T Consensus 557 K~LA~~LFg~e~~liR~DMSEy~E~hsvsrLIGaPPGYVGy~eGG~LTeaVrr~--PysVvLfDEIEKA----HpdV~ni 630 (823)
T CHL00095 557 KALASYFFGSEEAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKK--PYTVVLFDEIEKA----HPDIFNL 630 (823)
T ss_pred HHHHHHHCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHCC--CCEEEEECHHHHC----CHHHHHH
T ss_conf 999999747820258853510155420767458998766778788201988719--9869986213113----8899998
Q ss_pred HHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-C---------------------------------------CCH
Q ss_conf 655406001681332010352364427999934865-5---------------------------------------441
Q gi|254780270|r 457 LLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-N---------------------------------------IPL 496 (820)
Q Consensus 457 llevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~-~---------------------------------------i~~ 496 (820)
T Consensus 631 lLQvlD---dG~LtD~~-Gr~vdF~NtIIImTSNlGs~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~P 706 (823)
T CHL00095 631 LLQILD---DGRLTDSK-GRTIDFKNTLIIMTSNLGSKVIEKGGGSLGFKLLEDGTKLDEKQYKRLSNLVNEELKQYFRP 706 (823)
T ss_pred HHHHCC---CCCCCCCC-CCEEECEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 876516---88434899-99884310399971650558887413443433344543220235899999999999843798
Q ss_pred HHCCCE-EEEEECCCCHHHHHHHHHHHHH--HHHHHHHCCCCCCCCCCHHHHHHHHH-CCCCCCHHHHHHHHHHHHH-HH
Q ss_conf 311724-7998258786899989998608--98998625781313228999999973-1774102347888799998-98
Q gi|254780270|r 497 PLMDRM-EIIRIAGYTEEEKLQIAKNHLV--KKVLTEHALKQEECCISDGVLLDIIR-LFTHEAGVRSFERALMKIA-RK 571 (820)
Q Consensus 497 ~l~drm-e~i~~~~y~~~ek~~i~~~~l~--p~~~~~~~~~~~~~~~~~~~i~~ii~-~Yt~EaGvR~l~r~i~~i~-r~ 571 (820)
T Consensus 707 EFlnRiDeii~F~~L~~~~l~~Iv~~~l~~l~~rl~~~~i---~l~~~~~a~~~l~~~gy~~~~GARpl~R~I~~~i~~~ 783 (823)
T CHL00095 707 EFLNRLDEIIVFRPLTKDEVWEIAEIMLKELFKRLNNQGI---QLEVDERFKTLLAKEGYNPLYGARPLRRAIMRLLEDP 783 (823)
T ss_pred HHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC---EEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 7873278278618999999999999999999999996898---5998889999999958797768136889999998899
Q ss_pred HHHHHHCCC
Q ss_conf 765421178
Q gi|254780270|r 572 AVTKIVKNS 580 (820)
Q Consensus 572 ~~~~~~~~~ 580 (820)
T Consensus 784 ls~~il~g~ 792 (823)
T CHL00095 784 LAEEVLSFK 792 (823)
T ss_pred HHHHHHCCC
T ss_conf 999997488