HHsearch alignment for GI: 254780270 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=99.78 E-value=1.6e-15 Score=136.28 Aligned_cols=263 Identities=25% Similarity=0.354 Sum_probs=194.2
Q ss_pred HHHHHCCCCCCCCC-CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC-----CCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 87654041587663-221068899877665201168999999999999842-----444673599860565650279999
Q gi|254780270|r 312 LDWLLGVPWDKKSK-TKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRV-----IKNKGLILCFVGPPGVGKTSLAQS 385 (820)
Q Consensus 312 ld~~~~lPW~~~t~-~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~-----~~~~g~il~l~gppgvGKts~~~s 385 (820)
T Consensus 463 v~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~~v~~a--IrraRaGL~dp~rPigsFlF~GPTGVGKTELAka 540 (786)
T COG0542 463 VARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDA--IRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKA 540 (786)
T ss_pred HHHHHCCCHHHHCHHHHHHHHHHHHHHHCCEECHHHHHHHHHHH--HHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 99987898364133258899867999736501739999999999--9998569999998735788667886569999999
Q ss_pred HHHHHC---CCEEEEECCCCCC---HHHHCCCCCCCCCCCCHHH-HHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHH
Q ss_conf 997708---8249986188888---8883563200145671289-99998327887399993315542311771155665
Q gi|254780270|r 386 IAKATG---RQYVRMSLGGVYD---EADIRGHRRTYIGSMPGRI-IQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALL 458 (820)
Q Consensus 386 ia~al~---r~f~~islgg~~d---~~~i~gh~~ty~ga~pg~i-i~~l~~~~~~npv~~ldeidk~~~~~~gdp~~all 458 (820)
T Consensus 541 LA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~--PySViLlDEIEKA----HpdV~nilL 614 (786)
T COG0542 541 LAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRK--PYSVILLDEIEKA----HPDVFNLLL 614 (786)
T ss_pred HHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHCC--CCEEEEECHHHHC----CHHHHHHHH
T ss_conf 9999659974445545687777877998727999872006554003766069--9868884126440----889999999
Q ss_pred HHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-C-C---------------------------CHHHCCCEE-EEEEC
Q ss_conf 5406001681332010352364427999934865-5-4---------------------------413117247-99825
Q gi|254780270|r 459 EVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-N-I---------------------------PLPLMDRME-IIRIA 508 (820)
Q Consensus 459 evldp~qn~~f~d~y~~~~~dls~v~fi~tan~~-~-i---------------------------~~~l~drme-~i~~~ 508 (820)
T Consensus 615 QVlD---dGrLTD~~-Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~ 690 (786)
T COG0542 615 QVLD---DGRLTDGQ-GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFN 690 (786)
T ss_pred HHHC---CCCEECCC-CCEEECCEEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCEEECC
T ss_conf 9846---78055489-9888430028998450265989753134321004678899999998538998985126178506
Q ss_pred CCCHHHHHHHHHHHHHH--HHHHHHCCCCCCCCCCHHHHHHHHHC-CCCCCHHHHHHHHHHH-HHHHHHHHHHCCCC---
Q ss_conf 87868999899986089--89986257813132289999999731-7741023478887999-98987654211785---
Q gi|254780270|r 509 GYTEEEKLQIAKNHLVK--KVLTEHALKQEECCISDGVLLDIIRL-FTHEAGVRSFERALMK-IARKAVTKIVKNSD--- 581 (820)
Q Consensus 509 ~y~~~ek~~i~~~~l~p--~~~~~~~~~~~~~~~~~~~i~~ii~~-Yt~EaGvR~l~r~i~~-i~r~~~~~~~~~~~--- 581 (820)
T Consensus 691 ~L~~~~l~~Iv~~~L~~l~~~L~~~~i---~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~~~~~~~ 767 (786)
T COG0542 691 PLSKEVLERIVDLQLNRLAKRLAERGI---TLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIEDG 767 (786)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCC---EEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 799899999999999999999986895---59988899999999646877673679999999998999999984665799
Q ss_pred CEECCCHH
Q ss_conf 20127967
Q gi|254780270|r 582 TTVSINEN 589 (820)
Q Consensus 582 ~~~~i~~~ 589 (820)
T Consensus 768 ~~v~v~~~ 775 (786)
T COG0542 768 GTVKVDVD 775 (786)
T ss_pred CEEEEEEC
T ss_conf 67999951