HHsearch alignment for GI: 254780270 and conserved domain: COG0542

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=99.78  E-value=1.6e-15  Score=136.28  Aligned_cols=263  Identities=25%  Similarity=0.354  Sum_probs=194.2

Q ss_pred             HHHHHCCCCCCCCC-CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC-----CCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf             87654041587663-221068899877665201168999999999999842-----444673599860565650279999
Q gi|254780270|r  312 LDWLLGVPWDKKSK-TKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRV-----IKNKGLILCFVGPPGVGKTSLAQS  385 (820)
Q Consensus       312 ld~~~~lPW~~~t~-~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~-----~~~~g~il~l~gppgvGKts~~~s  385 (820)
T Consensus       463 v~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~~v~~a--IrraRaGL~dp~rPigsFlF~GPTGVGKTELAka  540 (786)
T COG0542         463 VARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDA--IRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKA  540 (786)
T ss_pred             HHHHHCCCHHHHCHHHHHHHHHHHHHHHCCEECHHHHHHHHHHH--HHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf             99987898364133258899867999736501739999999999--9998569999998735788667886569999999


Q ss_pred             HHHHHC---CCEEEEECCCCCC---HHHHCCCCCCCCCCCCHHH-HHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHH
Q ss_conf             997708---8249986188888---8883563200145671289-99998327887399993315542311771155665
Q gi|254780270|r  386 IAKATG---RQYVRMSLGGVYD---EADIRGHRRTYIGSMPGRI-IQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALL  458 (820)
Q Consensus       386 ia~al~---r~f~~islgg~~d---~~~i~gh~~ty~ga~pg~i-i~~l~~~~~~npv~~ldeidk~~~~~~gdp~~all  458 (820)
T Consensus       541 LA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~--PySViLlDEIEKA----HpdV~nilL  614 (786)
T COG0542         541 LAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRK--PYSVILLDEIEKA----HPDVFNLLL  614 (786)
T ss_pred             HHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHCC--CCEEEEECHHHHC----CHHHHHHHH
T ss_conf             9999659974445545687777877998727999872006554003766069--9868884126440----889999999


Q ss_pred             HHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-C-C---------------------------CHHHCCCEE-EEEEC
Q ss_conf             5406001681332010352364427999934865-5-4---------------------------413117247-99825
Q gi|254780270|r  459 EVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-N-I---------------------------PLPLMDRME-IIRIA  508 (820)
Q Consensus       459 evldp~qn~~f~d~y~~~~~dls~v~fi~tan~~-~-i---------------------------~~~l~drme-~i~~~  508 (820)
T Consensus       615 QVlD---dGrLTD~~-Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~  690 (786)
T COG0542         615 QVLD---DGRLTDGQ-GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFN  690 (786)
T ss_pred             HHHC---CCCEECCC-CCEEECCEEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCEEECC
T ss_conf             9846---78055489-9888430028998450265989753134321004678899999998538998985126178506


Q ss_pred             CCCHHHHHHHHHHHHHH--HHHHHHCCCCCCCCCCHHHHHHHHHC-CCCCCHHHHHHHHHHH-HHHHHHHHHHCCCC---
Q ss_conf             87868999899986089--89986257813132289999999731-7741023478887999-98987654211785---
Q gi|254780270|r  509 GYTEEEKLQIAKNHLVK--KVLTEHALKQEECCISDGVLLDIIRL-FTHEAGVRSFERALMK-IARKAVTKIVKNSD---  581 (820)
Q Consensus       509 ~y~~~ek~~i~~~~l~p--~~~~~~~~~~~~~~~~~~~i~~ii~~-Yt~EaGvR~l~r~i~~-i~r~~~~~~~~~~~---  581 (820)
T Consensus       691 ~L~~~~l~~Iv~~~L~~l~~~L~~~~i---~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~~~~~~~  767 (786)
T COG0542         691 PLSKEVLERIVDLQLNRLAKRLAERGI---TLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIEDG  767 (786)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCC---EEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             799899999999999999999986895---59988899999999646877673679999999998999999984665799


Q ss_pred             CEECCCHH
Q ss_conf             20127967
Q gi|254780270|r  582 TTVSINEN  589 (820)
Q Consensus       582 ~~~~i~~~  589 (820)
T Consensus       768 ~~v~v~~~  775 (786)
T COG0542         768 GTVKVDVD  775 (786)
T ss_pred             CEEEEEEC
T ss_conf             67999951