HHsearch alignment for GI: 254780270 and conserved domain: COG1067
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=1.5e-38 Score=310.67 Aligned_cols=345 Identities=24% Similarity=0.324 Sum_probs=255.3
Q ss_pred CCEEEEEECHHHHHHHCCCCHHHHHHH--HCCCCCCCCEEEEEC---CCCCCCCCEEEEEECCCC-CCCHHHCCCEEE--
Q ss_conf 873999933155423117711556655--406001681332010---352364427999934865-544131172479--
Q gi|254780270|r 433 SNPLLLLDEIDKMGSDLRGDPSAALLE--VLDPAQNSSFVDHYL---EVEYDLSDVMFIMTANTL-NIPLPLMDRMEI-- 504 (820)
Q Consensus 433 ~npv~~ldeidk~~~~~~gdp~~alle--vldp~qn~~f~d~y~---~~~~dls~v~fi~tan~~-~i~~~l~drme~-- 504 (820)
T Consensus 225 ngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~-klI~~Gn~~~l~~l~~~~~~r~~g~~ 303 (647)
T COG1067 225 NGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDL-KLILAGNREDLEDLHEPDRSRIEGFG 303 (647)
T ss_pred CCCEEEEEHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCE-EEEEECCHHHHHHHCCCCHHHHHHCC
T ss_conf 58479997566328398999999998244566576740248615788855654-89940889999765534777884055
Q ss_pred --EEECCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHH---HH-HHHHHHHHHHHHHHH
Q ss_conf --98258786-899989998608989986257813132289999999731774102347---88-879999898765421
Q gi|254780270|r 505 --IRIAGYTE-EEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRS---FE-RALMKIARKAVTKIV 577 (820)
Q Consensus 505 --i~~~~y~~-~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~---l~-r~i~~i~r~~~~~~~ 577 (820)
T Consensus 304 y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~---~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~-~A~~ia 379 (647)
T COG1067 304 YEAEFEDTMPITDANRSKLVQFYVQELARDG---NIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVR-EAGDIA 379 (647)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHH-HHHHHH
T ss_conf 6899768889986899999999999998628---999888899999999999861656502148999999999-866888
Q ss_pred CCCCCEECCCHHHHHHHHCCCCCCC---------CC-------HHCCCCCCCCCEEEECCCCCE-E----EEEEEEEECC
Q ss_conf 1785201279678675305200033---------20-------002233650000000001680-7----9999999748
Q gi|254780270|r 578 KNSDTTVSINENNLQDYLGVPRYKY---------GK-------IEGEDQVGIVTGLAWTEVGGE-I----LTVEGVIMPG 636 (820)
Q Consensus 578 ~~~~~~~~i~~~~l~~~lg~~~~~~---------~~-------~~~~~~~G~v~GLa~t~~GG~-~----l~IE~~~~~g 636 (820)
T Consensus 380 ~~~~~~-~I~ae~Ve~a~~~~~~~e~~l~e~~~~~~~~~~~li~t~G~~VG~ingLsV~~~~~~~~~g~p~~is~~~~~g 458 (647)
T COG1067 380 VSEGRK-LITAEDVEEALQKRELREGQLAERYIEDIKGGQILIETEGERVGQINGLSVIEVPGHHAFGEPARISCAVHKG 458 (647)
T ss_pred HCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEECC
T ss_conf 537866-4769999999987466789999998998755658986536220046015898517864356203787777517
Q ss_pred CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCCCC------CCCCCHHHHHHHHHHHHHHC
Q ss_conf 997244325689999999999999999888629985574207814744888847------88873068999999999836
Q gi|254780270|r 637 KGEITITGNLKEIMKESILAASSYVRSKATTFGIIPSAFNEINIHVHVPEGATP------KDGPSAGIAMATAIVSIMTC 710 (820)
Q Consensus 637 ~g~l~lTG~lg~vmkES~~~A~s~~k~~~~~~~~~~~~~~~~diHih~p~Ga~p------KDGPSAGi~i~tal~S~~~~ 710 (820)
T Consensus 459 ~g~i~d~er~~~la-g~I~~k~~mI~~~---~~~~---~~~~d~~i~fs~s~~~eqsy~~vDGDSAS~A~~~aliSAl~~ 531 (647)
T COG1067 459 DGEIVDIERKAELA-GNIHNKGMMIKQA---FLMS---ILNYDIHIPFSASLVFEQSYGEVDGDSASLAEACALISALSK 531 (647)
T ss_pred CCCEEEHHHHHHHH-HHHHHHHHHHHHH---HCCC---CCCCCEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 88513213455555-6677889999998---5577---435855667766898875236666864889999999999854
Q ss_pred CCCCCCCEEEEEEEECCEEEEECCHHHHHH-------HHHHCCCCEEECCHHHHHHHHHCCHHHH-----CCCEEEECCC
Q ss_conf 888756106636850302500065689999-------9997099699803677550776148877-----0979998193
Q gi|254780270|r 711 IPVYKNVAMTGELTLRGRVLPIGGLKEKLL-------AALRAGVTKVLIPEENIKDLMDIPENVK-----NGLEIIPVSF 778 (820)
Q Consensus 711 ~~v~~~iAmTGEitl~G~VlpiGGi~eK~l-------aA~raGi~~viiP~~N~~d~~~ip~~~~-----~~l~~~~v~~ 778 (820)
T Consensus 532 ~Pv~Q~iAiTGsi~q~G~VqpVGGV~eKIEgf~~~c~~~~~~G~q~ViIP~~N~~~l~-l~~~v~~av~~g~f~I~~V~~ 610 (647)
T COG1067 532 IPVDQDIAITGSIDQFGEVQPVGGVNEKIEGFFRVCQAAGLTGEQGVIIPKANVKDLS-LSEDVVKAVKEGKFEIWPVET 610 (647)
T ss_pred CCCCCCEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHH-CCHHHHHHHHCCCEEEEEECC
T ss_conf 8875634678633367724544773053000488888876158854883313186640-238788775448469999572
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9998887602788
Q gi|254780270|r 779 MGEVLKHALLRMP 791 (820)
Q Consensus 779 ~~evl~~al~~~~ 791 (820)
T Consensus 611 i~eal~~~~~~~~ 623 (647)
T COG1067 611 IDEALELLLGKGE 623 (647)
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999827874