HHsearch alignment for GI: 254780270 and conserved domain: COG1224
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription].
Probab=98.66 E-value=5.3e-07 Score=71.86 Aligned_cols=189 Identities=32% Similarity=0.467 Sum_probs=118.4
Q ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC--CCEEEEECCCCCC------HHH-----------HCCCCCCC-----
Q ss_conf 42444673599860565650279999997708--8249986188888------888-----------35632001-----
Q gi|254780270|r 360 RVIKNKGLILCFVGPPGVGKTSLAQSIAKATG--RQYVRMSLGGVYD------EAD-----------IRGHRRTY----- 415 (820)
Q Consensus 360 ~~~~~~g~il~l~gppgvGKts~~~sia~al~--r~f~~islgg~~d------~~~-----------i~gh~~ty----- 415 (820)
T Consensus 59 k~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~RraIGvrikE~reV~EGeV~ 138 (450)
T COG1224 59 KQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRRAIGVRIKETREVYEGEVV 138 (450)
T ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEECCCHHHHHHHHHHHHHCEEEEEEEEEEEEEEE
T ss_conf 71766661799978999768899999999858999821501332233100088999999998645486466688877899
Q ss_pred --------------------------------CCCCCHHHHHHHHHCCCCCE-EEEEEC----HHHHHHHCCCCHHHHHH
Q ss_conf --------------------------------45671289999983278873-999933----15542311771155665
Q gi|254780270|r 416 --------------------------------IGSMPGRIIQSLKRAKRSNP-LLLLDE----IDKMGSDLRGDPSAALL 458 (820)
Q Consensus 416 --------------------------------~ga~pg~ii~~l~~~~~~np-v~~lde----idk~~~~~~gdp~~all 458 (820)
T Consensus 139 ~l~i~~~~~p~~~y~~~~~~~~i~LkT~d~~k~~~lg~~i~~ql~~~~V~~GDVI~Id~etG~V~klGrs~~~~~~~~dl 218 (450)
T COG1224 139 ELEIRRARNPLNPYGKVPSGAIITLKTKDEEKTLRLGPEIAEQLVKEGVEEGDVIYIDAETGRVKKLGRSKARAREDFDL 218 (450)
T ss_pred EEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEECCHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCC
T ss_conf 99876235799876655453289999636645762598999999983744587899982566799942242335422334
Q ss_pred H-------------------------HCCCC---C----------------------C-----------------CCEEE
Q ss_conf 5-------------------------40600---1----------------------6-----------------81332
Q gi|254780270|r 459 E-------------------------VLDPA---Q----------------------N-----------------SSFVD 471 (820)
Q Consensus 459 e-------------------------vldp~---q----------------------n-----------------~~f~d 471 (820)
T Consensus 219 ~~~~~V~~P~Gev~K~KEi~~~vTLHDlDv~nar~~G~~sl~~~~~~eI~~evR~~vn~~V~~~ieeGkAElVpGVLFID 298 (450)
T COG1224 219 EDTRFVPLPEGEVQKRKEIVQTVTLHDLDVANARAQGILSLFSGGTGEITDEVREEVNEKVKKWIEEGKAELVPGVLFID 298 (450)
T ss_pred CCEEEEECCCCCEEEEEEEEEEEEEHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEEE
T ss_conf 42179877988525667789998700313432041113756527766578899999999999998549578613428973
Q ss_pred --EECC----------CCCCCCCEEEEEEC---------CC--CC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf --0103----------52364427999934---------86--55-4413117247998258786899989998608989
Q gi|254780270|r 472 --HYLE----------VEYDLSDVMFIMTA---------NT--LN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKV 527 (820)
Q Consensus 472 --~y~~----------~~~dls~v~fi~ta---------n~--~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~ 527 (820)
T Consensus 299 EvHmLDIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~iR----- 373 (450)
T COG1224 299 EVHMLDIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIRIR----- 373 (450)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCCCCCHHHHHHEEEEECCCCCHHHHHHHHHHH-----
T ss_conf 213455789999998763146757999717750012166776888898766622567744779889999999976-----
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHH
Q ss_conf 98625781313228999999973177410234
Q gi|254780270|r 528 LTEHALKQEECCISDGVLLDIIRLFTHEAGVR 559 (820)
Q Consensus 528 ~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR 559 (820)
T Consensus 374 -----a~ee~i~l~~~Ale~L~~ig-~etSLR 399 (450)
T COG1224 374 -----AKEEDIELSDDALEYLTDIG-EETSLR 399 (450)
T ss_pred -----HHHHCCCCCHHHHHHHHHHC-HHHHHH
T ss_conf -----43540304888999997515-034489