HHsearch alignment for GI: 254780270 and conserved domain: COG1239
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism].
Probab=98.67 E-value=5.2e-07 Score=71.93 Aligned_cols=227 Identities=19% Similarity=0.299 Sum_probs=141.1
Q ss_pred HHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC----------------------------
Q ss_conf 2011689999999999998424446735998605656502799999977088----------------------------
Q gi|254780270|r 341 HFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR---------------------------- 392 (820)
Q Consensus 341 hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r---------------------------- 392 (820)
T Consensus 19 ivGqd~lk~aL~----l~av~P~iggvLI~--G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~ 92 (423)
T COG1239 19 IVGQDPLKLALG----LNAVDPQIGGALIA--GEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGD 92 (423)
T ss_pred HCCCHHHHHHHH----HHHCCCCCCEEEEE--CCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 437537778876----53026310426876--688752779999999867963321688788998870555199986202
Q ss_pred ------------CEEEEECCCCCC--------HHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCC
Q ss_conf ------------249986188888--------888356320014567128999998327887399993315542311771
Q gi|254780270|r 393 ------------QYVRMSLGGVYD--------EADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGD 452 (820)
Q Consensus 393 ------------~f~~islgg~~d--------~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gd 452 (820)
T Consensus 93 e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af---~PGlLa~A------nRGIlYvDEvnlL~d~l--- 160 (423)
T COG1239 93 ELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAF---QPGLLARA------NRGILYVDEVNLLDDHL--- 160 (423)
T ss_pred CCCCCCCCCEECCEECCCCCCCHHHHCCCCCHHHHHHCCCCCC---CCCCHHHC------CCCEEEEECCCCCCHHH---
T ss_conf 3244542210031223887630433004567999972683002---77511003------58879872334351899---
Q ss_pred HHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCEEEEEECCCC--CCCHHHCCC-EEEEEECCC-CHHHHHHHHHHHHH---
Q ss_conf 1556655406001681332010-352364427999934865--544131172-479982587-86899989998608---
Q gi|254780270|r 453 PSAALLEVLDPAQNSSFVDHYL-EVEYDLSDVMFIMTANTL--NIPLPLMDR-MEIIRIAGY-TEEEKLQIAKNHLV--- 524 (820)
Q Consensus 453 p~~allevldp~qn~~f~d~y~-~~~~dls~v~fi~tan~~--~i~~~l~dr-me~i~~~~y-~~~ek~~i~~~~l~--- 524 (820)
T Consensus 161 -vd~LLd~aaeG~n~vereGisi~hp---a~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~ 236 (423)
T COG1239 161 -VDALLDVAAEGVNDVEREGISIRHP---ARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEA 236 (423)
T ss_pred -HHHHHHHHHHCCCEEEECCEEECCC---CCEEEEEECCCCCCCCCHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf -9999999971774033575031367---617999644854466324667541115623478878888999999887500
Q ss_pred -H----------------HHHH-HHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
Q ss_conf -9----------------8998-625781313228999999973177410234788879999898765421178520127
Q gi|254780270|r 525 -K----------------KVLT-EHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSI 586 (820)
Q Consensus 525 -p----------------~~~~-~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i 586 (820)
T Consensus 237 ~Pe~f~~~~~~~~~~lR~~ii~ar~~l--~~V~l~~~~~~~ia-~~~~~~~v~g~radi~-~~r-~a~a~aa~-~Gr~~v 310 (423)
T COG1239 237 VPEAFLEKYADAQRALRARIIAARSLL--SEVELDDDAETKIA-ELCARLAVDGHRADIV-VVR-AAKALAAL-RGRTEV 310 (423)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHH-HHHHHHCCCCCCHHHH-HHH-HHHHHHHH-CCCEEE
T ss_conf 829999999999999999999998446--66467677999999-9999856578742567-899-99999875-396045
Q ss_pred CHHHHHHHH
Q ss_conf 967867530
Q gi|254780270|r 587 NENNLQDYL 595 (820)
Q Consensus 587 ~~~~l~~~l 595 (820)
T Consensus 311 ~~~Di~~a~ 319 (423)
T COG1239 311 EEEDIREAA 319 (423)
T ss_pred EHHHHHHHH
T ss_conf 201377777