HHsearch alignment for GI: 254780270 and conserved domain: COG1474
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones].
Probab=99.04 E-value=5.7e-08 Score=79.16 Aligned_cols=204 Identities=21% Similarity=0.277 Sum_probs=124.8
Q ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-----EEEEECCCCCCHHHHCC--CC----CCCCCCCCHHHHHHHH
Q ss_conf 4244467359986056565027999999770882-----49986188888888356--32----0014567128999998
Q gi|254780270|r 360 RVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ-----YVRMSLGGVYDEADIRG--HR----RTYIGSMPGRIIQSLK 428 (820)
Q Consensus 360 ~~~~~~g~il~l~gppgvGKts~~~sia~al~r~-----f~~islgg~~d~~~i~g--h~----~ty~ga~pg~ii~~l~ 428 (820)
T Consensus 37 ~~~~~p~n-~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~ 115 (366)
T COG1474 37 LRGERPSN-IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLY 115 (366)
T ss_pred HCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 55899860-79988999873289999999997331567579995130787879999999982689976763268999999
Q ss_pred HC---CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCC-CCCCCEEEEECCCCCCCCCEEEEEECCCCC----CCHHHCC
Q ss_conf 32---788739999331554231177115566554060-016813320103523644279999348655----4413117
Q gi|254780270|r 429 RA---KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDP-AQNSSFVDHYLEVEYDLSDVMFIMTANTLN----IPLPLMD 500 (820)
Q Consensus 429 ~~---~~~npv~~ldeidk~~~~~~gdp~~allevldp-~qn~~f~d~y~~~~~dls~v~fi~tan~~~----i~~~l~d 500 (820)
T Consensus 116 ~~~~~~~~~~IvvLDEid~L~~~~~----~~LY~L~r~~~~~-------------~~~v~vi~i~n~~~~~~~ld~rv~s 178 (366)
T COG1474 116 DNLSKKGKTVIVILDEVDALVDKDG----EVLYSLLRAPGEN-------------KVKVSIIAVSNDDKFLDYLDPRVKS 178 (366)
T ss_pred HHHHHCCCEEEEEECCHHHHHCCCC----CHHHHEECCCCCC-------------CEEEEEEEEECCHHHHHHHHHHHHH
T ss_conf 9777418759999764765415464----1455111247767-------------5379999973548899987566765
Q ss_pred CE--EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 24--7998258786899989998608989986257813132289999999731774102347888799998987654211
Q gi|254780270|r 501 RM--EIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVK 578 (820)
Q Consensus 501 rm--e~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~ 578 (820)
T Consensus 179 ~l~~~~I~F~pY~a~el~~Il~~------R~~~~~~~--~~~~~~vl~lia~~~a~~~G--DAR~ai-dilr~A~-eiAe 246 (366)
T COG1474 179 SLGPSEIVFPPYTAEELYDILRE------RVEEGFSA--GVIDDDVLKLIAALVAAESG--DARKAI-DILRRAG-EIAE 246 (366)
T ss_pred CCCCCEEEECCCCHHHHHHHHHH------HHHHHHCC--CCCCHHHHHHHHHHHHHCCC--CHHHHH-HHHHHHH-HHHH
T ss_conf 06876355289898999999999------99854046--87480399999998876186--477608-9999999-9865
Q ss_pred CCCCEECCCHHHHHHH
Q ss_conf 7852012796786753
Q gi|254780270|r 579 NSDTTVSINENNLQDY 594 (820)
Q Consensus 579 ~~~~~~~i~~~~l~~~ 594 (820)
T Consensus 247 ~~~~~-~v~~~~v~~a 261 (366)
T COG1474 247 REGSR-KVSEDHVREA 261 (366)
T ss_pred HCCCC-CCCHHHHHHH
T ss_conf 40788-5370047889