HHsearch alignment for GI: 254780270 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=99.44 E-value=7.3e-12 Score=108.67 Aligned_cols=184 Identities=24% Similarity=0.355 Sum_probs=124.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC--CCCCCHHHHCCCCCCCCCCCCHHHHHHHHHC-C-CCCEEEEEECHH
Q ss_conf 59986056565027999999770882499861--8888888835632001456712899999832-7-887399993315
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSL--GGVYDEADIRGHRRTYIGSMPGRIIQSLKRA-K-RSNPLLLLDEID 443 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~~isl--gg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~-~-~~npv~~ldeid 443 (820)
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvk---dlr~------------i~e~a~~~~~~gr~tiLflDEIH 114 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVK---DLRE------------IIEEARKNRLLGRRTILFLDEIH 114 (436)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHH---HHHH------------HHHHHHHHHHCCCCEEEEEEHHH
T ss_conf 05777899988889999998761776699515234679---9999------------99999998725883499872253
Q ss_pred HHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEE--EECCCC-CCCHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 5423117711556655406001681332010352364427999--934865-5441311724799825878689998999
Q gi|254780270|r 444 KMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFI--MTANTL-NIPLPLMDRMEIIRIAGYTEEEKLQIAK 520 (820)
Q Consensus 444 k~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi--~tan~~-~i~~~l~drme~i~~~~y~~~ek~~i~~ 520 (820)
T Consensus 115 RfnK~QQ----D~lLp~vE-----------------~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ 173 (436)
T COG2256 115 RFNKAQQ----DALLPHVE-----------------NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLK 173 (436)
T ss_pred HCCHHHH----HHHHHHHC-----------------CCEEEEEECCCCCCCEEECHHHHHHHHEEEEECCCHHHHHHHHH
T ss_conf 3374456----55103324-----------------88689996267898714038886110415651699899999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCCC
Q ss_conf 86089899862578131322899999997317741023478887999989876542117852012796786753052000
Q gi|254780270|r 521 NHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPRY 600 (820)
Q Consensus 521 ~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~~~ 600 (820)
T Consensus 174 ra~---~~~~rgl~~~~~~i~~~a~~~l~~~s~--GD~R~aLN~LE-----~~~~~~~~~~---~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 174 RAL---LDEERGLGGQIIVLDEEALDYLVRLSN--GDARRALNLLE-----LAALSAEPDE---VLILELLEEILQRRSA 240 (436)
T ss_pred HHH---HHHHCCCCCCCCCCCHHHHHHHHHHCC--CHHHHHHHHHH-----HHHHHCCCCC---CCCHHHHHHHHHHHHH
T ss_conf 998---654137776556688899999998628--61999988999-----9998627775---2479999999865520