HHsearch alignment for GI: 254780270 and conserved domain: COG3284
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].
Probab=96.63 E-value=0.0055 Score=41.44 Aligned_cols=164 Identities=23% Similarity=0.389 Sum_probs=93.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH--HCCCEEEEECCCCCC---HHHHCCCCCCCCCCCCHHHHHHHHHC--CCCCEEE
Q ss_conf 6735998605656502799999977--088249986188888---88835632001456712899999832--7887399
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKA--TGRQYVRMSLGGVYD---EADIRGHRRTYIGSMPGRIIQSLKRA--KRSNPLL 437 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~a--l~r~f~~islgg~~d---~~~i~gh~~ty~ga~pg~ii~~l~~~--~~~npv~ 437 (820)
T Consensus 336 ~~p-vll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~---GafTga~~kG~~g~~~~A~gGtl 411 (606)
T COG3284 336 DLP-VLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVA---GAFTGARRKGYKGKLEQADGGTL 411 (606)
T ss_pred CCC-EEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCC---CCCCCCHHCCCCCCCEECCCCCC
T ss_conf 787-68538765568999999985365569837998503447764677744576---56433001066554101578760
Q ss_pred EEECHHHHHHHCCCCHHHHHHHHCC--------CC-C-------------------CCCEE-EEECCCCCCCCCEEEEEE
Q ss_conf 9933155423117711556655406--------00-1-------------------68133-201035236442799993
Q gi|254780270|r 438 LLDEIDKMGSDLRGDPSAALLEVLD--------PA-Q-------------------NSSFV-DHYLEVEYDLSDVMFIMT 488 (820)
Q Consensus 438 ~ldeidk~~~~~~gdp~~allevld--------p~-q-------------------n~~f~-d~y~~~~~dls~v~fi~t 488 (820)
T Consensus 412 FldeIgd~p~~~----Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyy----rL~~~----- 478 (606)
T COG3284 412 FLDEIGDMPLAL----QSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYY----RLNAF----- 478 (606)
T ss_pred HHHHHHHCHHHH----HHHHHHHHHHCCEECCCCCCEEEEEEEEECCCCCHHHHHHCCCCHHHHHH----HHCCE-----
T ss_conf 898761141899----99999998618252358852157799983467579999875971487888----74471-----
Q ss_pred CCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 4865544131172479982587868999899986089899862578131322899999997317741023478887999
Q gi|254780270|r 489 ANTLNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMK 567 (820)
Q Consensus 489 an~~~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~ 567 (820)
T Consensus 479 --~i~l-P~lr~R~d~~----------------~~l~~~~~~~~~--~~~~l~~~~~~~l~-~~~WPGNirel~~v~~~ 535 (606)
T COG3284 479 --VITL-PPLRERSDRI----------------PLLDRILKREND--WRLQLDDDALARLL-AYRWPGNIRELDNVIER 535 (606)
T ss_pred --EECC-CCHHCCCCCH----------------HHHHHHHHHCCC--CCCCCCHHHHHHHH-HCCCCCCHHHHHHHHHH
T ss_conf --5506-8611046657----------------899999987268--77568999999998-57899828999999999