HHsearch alignment for GI: 254780270 and conserved domain: COG3604
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].
Probab=98.22 E-value=1.7e-05 Score=60.52 Aligned_cols=173 Identities=24% Similarity=0.381 Sum_probs=118.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCC---HHHHCCCCCC-CCC---CCCHHHHHHHHHCCCC
Q ss_conf 46735998605656502799999977088---249986188888---8883563200-145---6712899999832788
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYD---EADIRGHRRT-YIG---SMPGRIIQSLKRAKRS 433 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d---~~~i~gh~~t-y~g---a~pg~ii~~l~~~~~~ 433 (820)
T Consensus 245 Sd~tV-Li~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFEl------Ad 317 (550)
T COG3604 245 SDSTV-LIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFEL------AD 317 (550)
T ss_pred CCCEE-EEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCHHCCCCCEEE------CC
T ss_conf 89807-984588853899999998737555798666312225378888887453322333510146763565------57
Q ss_pred CEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEE----EEECCCCCCCCCEEEEEECC-CC----------------
Q ss_conf 7399993315542311771155665540600168133----20103523644279999348-65----------------
Q gi|254780270|r 434 NPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFV----DHYLEVEYDLSDVMFIMTAN-TL---------------- 492 (820)
Q Consensus 434 npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~----d~y~~~~~dls~v~fi~tan-~~---------------- 492 (820)
T Consensus 318 GGTLFLDEIGelPL~lQ----aKLLRvL---QegEieRvG~~r~--ikV---DVRiIAATNRDL~~~V~~G~FRaDLYyR 385 (550)
T COG3604 318 GGTLFLDEIGELPLALQ----AKLLRVL---QEGEIERVGGDRT--IKV---DVRVIAATNRDLEEMVRDGEFRADLYYR 385 (550)
T ss_pred CCEEECHHHCCCCHHHH----HHHHHHH---HHCCEEECCCCCE--EEE---EEEEEECCCHHHHHHHHCCCCHHHHHHC
T ss_conf 97576022036787788----9999998---6365253479963--677---7899821353099998749515545321
Q ss_pred ----C-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf ----5-44131172479982587868999899986089899862578131322899999997317741023478887999
Q gi|254780270|r 493 ----N-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMK 567 (820)
Q Consensus 493 ----~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~ 567 (820)
T Consensus 386 LsV~Pl~lPPLRER~-----------~DIplLA~~Fle~~~~~~gr--~~l~ls~~Al~~-L~~y~wPGNVRELen~veR 451 (550)
T COG3604 386 LSVFPLELPPLRERP-----------EDIPLLAGYFLEKFRRRLGR--AILSLSAEALEL-LSSYEWPGNVRELENVVER 451 (550)
T ss_pred CCCCCCCCCCCCCCC-----------CCHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHH-HHCCCCCCCHHHHHHHHHH
T ss_conf 020013789834588-----------66799999999999886397--640339899999-9739999719999989999
Q ss_pred HH
Q ss_conf 98
Q gi|254780270|r 568 IA 569 (820)
Q Consensus 568 i~ 569 (820)
T Consensus 452 av 453 (550)
T COG3604 452 AV 453 (550)
T ss_pred HH
T ss_conf 99