HHsearch alignment for GI: 254780270 and conserved domain: COG4240
>COG4240 Predicted kinase [General function prediction only].
Probab=94.67 E-value=0.26 Score=28.79 Aligned_cols=202 Identities=20% Similarity=0.242 Sum_probs=101.8
Q ss_pred HHHHHHHHHH--HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEECCCCCCH-----HHHC---C-CCCCCC
Q ss_conf 9999999999--842444673599860565650279999997708824-99861888888-----8835---6-320014
Q gi|254780270|r 349 ERIIEYLAVQ--MRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQY-VRMSLGGVYDE-----ADIR---G-HRRTYI 416 (820)
Q Consensus 349 ~rile~lav~--~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f-~~islgg~~d~-----~~i~---g-h~~ty~ 416 (820)
T Consensus 31 dl~Lpll~Kiap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~ 110 (300)
T COG4240 31 DLHLPLLAKIAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQT 110 (300)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHCCCHHCC
T ss_conf 98778898644544212796399852688876535999999999973653068866455310438999998733804302
Q ss_pred CCCCH--------HHHHHHHHCCCCCEEEEEECHHHH---HHHCCCCHHHHHHHHCCCCCCCCE-EEEEC------C-CC
Q ss_conf 56712--------899999832788739999331554---231177115566554060016813-32010------3-52
Q gi|254780270|r 417 GSMPG--------RIIQSLKRAKRSNPLLLLDEIDKM---GSDLRGDPSAALLEVLDPAQNSSF-VDHYL------E-VE 477 (820)
Q Consensus 417 ga~pg--------~ii~~l~~~~~~npv~~ldeidk~---~~~~~gdp~~allevldp~qn~~f-~d~y~------~-~~ 477 (820)
T Consensus 111 RGlpGTHD~tlglnVLnai~~g~~--~-V~lPrfDKS~f~gagDR~p----------~~q~ik~~vdivIlEGWfvGfrP 177 (300)
T COG4240 111 RGLPGTHDPTLGLNVLNAIARGGP--T-VPLPRFDKSAFAGAGDRAP----------QTQWIKFEVDIVILEGWFVGFRP 177 (300)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCC--C-CCCCCCCCHHCCCCCCCCC----------CCCCEECCEEEEEEEEEEEECCC
T ss_conf 699987761789999999965899--8-6666544020157787898----------65412212049998500641244
Q ss_pred CCCCCEEEEEECCCC----------------CCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 364427999934865----------------5441311724799825878689998999860898998625781313228
Q gi|254780270|r 478 YDLSDVMFIMTANTL----------------NIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCIS 541 (820)
Q Consensus 478 ~dls~v~fi~tan~~----------------~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~ 541 (820)
T Consensus 178 id--p~ll~~p~n~l~~~ed~a~~~dvN~kLa~Y~pL~~rI-----dsLillta~din~vy~WRlQqEhkliAr~~kgms 250 (300)
T COG4240 178 ID--PELLAAPVNALEAAEDGAWRADVNDKLAPYRPLFDRI-----DSLILLTAPDINTVYAWRLQQEHKLIARLAKGMS 250 (300)
T ss_pred CC--HHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHH-----HHEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 89--9993798863022113227888775520107899986-----3425742551488999988878999998863686
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999731774102347888799998987654
Q gi|254780270|r 542 DGVLLDIIRLFTHEAGVRSFERALMKIARKAVTK 575 (820)
Q Consensus 542 ~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~ 575 (820)
T Consensus 251 deqv~efvn~ym-----rsl~lylq~ls~~~al~ 279 (300)
T COG4240 251 DEQVSEFVNAYM-----RSLELYLQRLSEWIALD 279 (300)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHCC
T ss_conf 888999999888-----99999998888888718