HHsearch alignment for GI: 254780270 and conserved domain: KOG0479
>KOG0479 consensus.
Probab=94.64 E-value=0.051 Score=34.12 Aligned_cols=159 Identities=26% Similarity=0.323 Sum_probs=94.2
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHH-----CC-CCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEEEEC--CCCCC
Q ss_conf 987766520116899999999999984-----24-446735-9986056565027999999770882499861--88888
Q gi|254780270|r 334 IRILDQDHFGLEKVKERIIEYLAVQMR-----VI-KNKGLI-LCFVGPPGVGKTSLAQSIAKATGRQYVRMSL--GGVYD 404 (820)
Q Consensus 334 ~~iLd~~hyGl~~vK~rile~lav~~~-----~~-~~~g~i-l~l~gppgvGKts~~~sia~al~r~f~~isl--gg~~d 404 (820)
T Consensus 296 a~SLAPSI~GH~~vKkAillLL-lGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGL 374 (818)
T KOG0479 296 ARSLAPSIYGHDYVKKAILLLL-LGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGL 374 (818)
T ss_pred HHCCCCCCCCHHHHHHHHHHHH-HCCCEECCCCCCEECCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 6503762035799999999998-545012057886222520389846952789999999984154001036888777551
Q ss_pred H-----HHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHH-------------------
Q ss_conf 8-----8835632001456712899999832788739999331554231177115566554-------------------
Q gi|254780270|r 405 E-----ADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEV------------------- 460 (820)
Q Consensus 405 ~-----~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allev------------------- 460 (820)
T Consensus 375 TAAVTtD~eTGERRLEAGAMV----------LADRGVVCIDEFDKMsDiDRv----AIHEVMEQqtVTIaKAGIHasLNA 440 (818)
T KOG0479 375 TAAVTTDQETGERRLEAGAMV----------LADRGVVCIDEFDKMSDIDRV----AIHEVMEQQTVTIAKAGIHASLNA 440 (818)
T ss_pred EEEEEECCCCCHHHHHCCCEE----------ECCCCEEEEHHCCCCCCHHHH----HHHHHHHCCEEEEEECCCHHHHCC
T ss_conf 467741555313434238368----------705855873100222430378----999998605388671100020235
Q ss_pred ------------------CCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-CCCHHH---CCCEEEEEECCCC
Q ss_conf ------------------06001681332010352364427999934865-544131---1724799825878
Q gi|254780270|r 461 ------------------LDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-NIPLPL---MDRMEIIRIAGYT 511 (820)
Q Consensus 461 ------------------ldp~qn~~f~d~y~~~~~dls~v~fi~tan~~-~i~~~l---~drme~i~~~~y~ 511 (820)
T Consensus 441 RCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLL-SRFDL---lFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~ 509 (818)
T KOG0479 441 RCSVLAAANPVYGQYDQSKTPMENIGLPDSLL-SRFDL---LFVVLDDIDADIDRMISEHVLRMHRYLTPGEE 509 (818)
T ss_pred CEEEEEECCCCCCCCCCCCCHHHCCCCCHHHH-HHHCE---EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 11244313764434677788565158817777-54217---78872135505777889999988632688666