HHsearch alignment for GI: 254780270 and conserved domain: KOG0740
>KOG0740 consensus.
Probab=98.88 E-value=3.3e-08 Score=81.02 Aligned_cols=203 Identities=23% Similarity=0.332 Sum_probs=127.6
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCC----CCCCCE--EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCC
Q ss_conf 652011689999999999998424----446735--99860565650279999997708824998618888888835632
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVI----KNKGLI--LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHR 412 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~----~~~g~i--l~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~ 412 (820)
T Consensus 153 ~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSas------sLts-- 224 (428)
T KOG0740 153 DDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISAS------SLTS-- 224 (428)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHEECCCCCCHHHHHHHHHHHHCCEEEECCHH------HHHH--
T ss_conf 57740566899865423220455376523544531112005898844799999986206657630688------8653--
Q ss_pred CCCCCCCCHHHHHHHHH-CCCCCE-EEEEECHHHHHHH--CCCCHHH--HHHHHCCCCCCCCEEEEEC-CCCCCCCCEEE
Q ss_conf 00145671289999983-278873-9999331554231--1771155--6655406001681332010-35236442799
Q gi|254780270|r 413 RTYIGSMPGRIIQSLKR-AKRSNP-LLLLDEIDKMGSD--LRGDPSA--ALLEVLDPAQNSSFVDHYL-EVEYDLSDVMF 485 (820)
Q Consensus 413 ~ty~ga~pg~ii~~l~~-~~~~np-v~~ldeidk~~~~--~~gdp~~--allevldp~qn~~f~d~y~-~~~~dls~v~f 485 (820)
T Consensus 225 -K~~Ge~-eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~------~-~~~s~~~d--rvlv 293 (428)
T KOG0740 225 -KYVGES-EKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQF------D-GKNSAPDD--RVLV 293 (428)
T ss_pred -HCCCHH-HHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHH------C-CCCCCCCC--EEEE
T ss_conf -246707-78999999998713970898402567886368754544555655777654------0-44578887--0799
Q ss_pred EEECCCC-CCCHHHCCC-EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 9934865-544131172-47998258786899989998608989986257813132289999999731774102347888
Q gi|254780270|r 486 IMTANTL-NIPLPLMDR-MEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFER 563 (820)
Q Consensus 486 i~tan~~-~i~~~l~dr-me~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r 563 (820)
T Consensus 294 igaTN~P~e~Dea~~Rrf~kr~yiplPd~et-----r~~~~~~ll~~~~~--~l~~~d~~~l~~~Tegysg--------s 358 (428)
T KOG0740 294 IGATNRPWELDEAARRRFVKRLYIPLPDYET-----RSLLWKQLLKEQPN--GLSDLDISLLAKVTEGYSG--------S 358 (428)
T ss_pred EECCCCCHHHHHHHHHHHCCEEEECCCCHHH-----HHHHHHHHHHHCCC--CCCHHHHHHHHHHHCCCCC--------C
T ss_conf 8158883677888888710315535988789-----99999999976878--7417789999988617562--------2
Q ss_pred HHHHHHHHHHHH
Q ss_conf 799998987654
Q gi|254780270|r 564 ALMKIARKAVTK 575 (820)
Q Consensus 564 ~i~~i~r~~~~~ 575 (820)
T Consensus 359 di~~l~kea~~~ 370 (428)
T KOG0740 359 DITALCKEAAMG 370 (428)
T ss_pred CHHHHHHHHHCC
T ss_conf 188998776238