HHsearch alignment for GI: 254780270 and conserved domain: KOG1808

Probab=97.25  E-value=0.00092  Score=47.30  Aligned_cols=138  Identities=28%  Similarity=0.412  Sum_probs=89.1

Q ss_pred             HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCC-------CHHHHHHHHHC
Q ss_conf             98424446735998605656502799999977088249986188888888356320014567-------12899999832
Q gi|254780270|r  358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSM-------PGRIIQSLKRA  430 (820)
Q Consensus       358 ~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~-------pg~ii~~l~~~  430 (820)
T Consensus       432 ~~~a~~~~~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig---~y~~~~~g~l~freg~LV~Alr~G  508 (1856)
T KOG1808         432 LARAISSGKFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIG---TYVADDNGDLVFREGVLVQALRNG  508 (1856)
T ss_pred             HHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEHHCCCCCHHHHHHH---HHEECCCCCEEEEHHHHHHHHHHC
T ss_conf             99999658998677547676811599999998546734200246333999986---650078897255346899998708


Q ss_pred             CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCC-------CCCCCCEEEEECCCCCCCCCEEEEEECCCC------C-CCH
Q ss_conf             78873999933155423117711556655406-------001681332010352364427999934865------5-441
Q gi|254780270|r  431 KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLD-------PAQNSSFVDHYLEVEYDLSDVMFIMTANTL------N-IPL  496 (820)
Q Consensus       431 ~~~npv~~ldeidk~~~~~~gdp~~allevld-------p~qn~~f~d~y~~~~~dls~v~fi~tan~~------~-i~~  496 (820)
T Consensus       509 ----~~~vlD~lnla~~----dvL~aLnrllddnRel~ipe~~rlv~~h~~--------f~lfatqn~~~~y~grk~lsR  572 (1856)
T KOG1808         509 ----DWIVLDELNLAPH----DVLEALNRLLDDNRELFIPETQRLVKAHPE--------FMLFATQNPPGTYGGRKILSR  572 (1856)
T ss_pred             ----CEEEECCCCCCCH----HHHHHHHHHHHHHCCCCCCCCCEEECCCCC--------HHHHHHCCCCCCCCHHHHHHH
T ss_conf             ----7798402012406----789999840454041256344323224701--------234543077666531566553


Q ss_pred             HHCCCEEEEEECCCCHHH
Q ss_conf             311724799825878689
Q gi|254780270|r  497 PLMDRMEIIRIAGYTEEE  514 (820)
Q Consensus       497 ~l~drme~i~~~~y~~~e  514 (820)
T Consensus       573 a~~~rf~e~~f~~~~e~e  590 (1856)
T KOG1808         573 ALRNRFIELHFDDIGEEE  590 (1856)
T ss_pred             CCCCCCHHHHHHHCCCHH
T ss_conf             144400235355257145