HHsearch alignment for GI: 254780270 and conserved domain: PRK00149
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed.
Probab=98.12 E-value=2.4e-05 Score=59.33 Aligned_cols=186 Identities=20% Similarity=0.279 Sum_probs=114.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECH
Q ss_conf 5998605656502799999977088-----24998618888888835632001456712899999832788739999331
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGR-----QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEI 442 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r-----~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldei 442 (820)
T Consensus 147 PLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~t-----ae~F~~----~~v~al~~~~~~~Fr~~yr~~DvLliDDi 217 (447)
T PRK00149 147 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVS-----SEKFTN----DFVKALRNNAMEEFKEKYRSVDVLLIDDI 217 (447)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE-----HHHHHH----HHHHHHHCCCHHHHHHHHHCCCEEEECHH
T ss_conf 558977998878899999999999858997289954-----999999----99999851869999999972885432148
Q ss_pred HHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECC---CCC-CCHHHCCCEE---EEEECCCCHHHH
Q ss_conf 554231177115566554060016813320103523644279999348---655-4413117247---998258786899
Q gi|254780270|r 443 DKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTAN---TLN-IPLPLMDRME---IIRIAGYTEEEK 515 (820)
Q Consensus 443 dk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan---~~~-i~~~l~drme---~i~~~~y~~~ek 515 (820)
T Consensus 218 qfl~gk--~~tqeeff~~fn~l-------------~~~~kqiv~tsd~~P~~l~~l~~rL~SRf~~Gl~~~i~~Pd~e~r 282 (447)
T PRK00149 218 QFLAGK--EKTQEEFFHTFNAL-------------HENNKQIVITSDRPPKELEGLEDRLRSRFEWGLTVDIEPPDLETR 282 (447)
T ss_pred HHHHCC--HHHHHHHHHHHHHH-------------HHCCCEEEEECCCCHHHCCCCCHHHHHHHHCCEEEECCCCCHHHH
T ss_conf 886055--77999999999999-------------984996899578896765651177886763762651059999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHH
Q ss_conf 98999860898998625781313228999999973177410234788879999898765421178520127967867530
Q gi|254780270|r 516 LQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYL 595 (820)
Q Consensus 516 ~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~l 595 (820)
T Consensus 283 ~~Il~~k~-----~~~-----~~~l~~~v~~~iA~~~~~--nvR~LeGal~~l~a~~~---~~~~----~i~~~~~~~~l 343 (447)
T PRK00149 283 VAILQKKA-----EEE-----GINLPNEVLEFIAKRIRS--NIRELEGALNRLVAYAS---LTGR----PITLELAKEAL 343 (447)
T ss_pred HHHHHHHH-----HHC-----CCCCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH---HHCC----CCCHHHHHHHH
T ss_conf 99999999-----972-----899998999999971268--89999999999999999---8689----99999999999
Q ss_pred C
Q ss_conf 5
Q gi|254780270|r 596 G 596 (820)
Q Consensus 596 g 596 (820)
T Consensus 344 ~ 344 (447)
T PRK00149 344 K 344 (447)
T ss_pred H
T ss_conf 9