HHsearch alignment for GI: 254780270 and conserved domain: PRK00440
>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=99.56 E-value=9.8e-13 Score=115.24 Aligned_cols=215 Identities=23% Similarity=0.386 Sum_probs=135.3
Q ss_pred HHCCCCC-CCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 5404158-766322106889987766520116899999999999984244467359986056565027999999770882
Q gi|254780270|r 315 LLGVPWD-KKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ 393 (820)
Q Consensus 315 ~~~lPW~-~~t~~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~ 393 (820)
T Consensus 1 m~~~lW~eKYRP~~l~----------di~g~~~~~~~L~~~i~------~~~~phlLf~GppG~GKTt~a~~la~~l~~~ 64 (318)
T PRK00440 1 MMEEIWVEKYRPRSLD----------EVVGQEEIVERLKSFVK------EKNMPHLLFAGPPGTGKTTAALALARELYGE 64 (318)
T ss_pred CCHHHHHHCCCCCCHH----------HHCCCHHHHHHHHHHHH------CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9423564601989899----------94196999999999998------7998669888959988999999999997698
Q ss_pred -----EEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC----EEEEEECHHHHHHHCCCCHHHHHHHHCCCC
Q ss_conf -----49986188888888356320014567128999998327887----399993315542311771155665540600
Q gi|254780270|r 394 -----YVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSN----PLLLLDEIDKMGSDLRGDPSAALLEVLDPA 464 (820)
Q Consensus 394 -----f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~n----pv~~ldeidk~~~~~~gdp~~allevldp~ 464 (820)
T Consensus 65 ~~~~~~lelna------sd~r~id-----~vr~-~i~~~~~~~~~~~~~~kiiiiDE~d~l~~~a----q~aL~~~mE~- 127 (318)
T PRK00440 65 YWRENFLELNA------SDERGID-----VIRN-KIKEFARTAPVGGAPFKIIFLDEADNLTSDA----QQALRRTMEM- 127 (318)
T ss_pred CCCCCEEEECC------CCCCCHH-----HHHH-HHHHHHHHCCCCCCCEEEEEEECCCCCCHHH----HHHHHHHHHC-
T ss_conf 64347689516------4566717-----8999-9999997267789973899986855322556----7888764310-
Q ss_pred CCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 16813320103523644279999348655-44131172479982587868999899986089899862578131322899
Q gi|254780270|r 465 QNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDG 543 (820)
Q Consensus 465 qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~ 543 (820)
T Consensus 128 --------~------~~~~~fil~~n~~~kii~~i~SRc~~i~f~~~~~~~i~~~L~-----~I~~~-----E~i~~~~~ 183 (318)
T PRK00440 128 --------Y------SQTTRFILSCNYSSKIIDPIQSRCAVFRFSPLPKEAVIERLR-----YIAKN-----EGLEITDD 183 (318)
T ss_pred --------C------CCCCEEEEECCCCCCCCCCHHHHHEEEECCCCCHHHHHHHHH-----HHHHH-----CCCCCCHH
T ss_conf --------5------666258863488333761556551011157899999999999-----99998-----59998999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCC
Q ss_conf 99999731774102347888799998987654211785201279678675305200
Q gi|254780270|r 544 VLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPR 599 (820)
Q Consensus 544 ~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~~ 599 (820)
T Consensus 184 ~l~~i~~~s~-----gdlR~ain~Lq~~~~--------~~~~it~~~v~~~~~~~~ 226 (318)
T PRK00440 184 ALEAIYYVSE-----GDMRKAINALQAAAA--------TGKEVTEEAVYKITGTAR 226 (318)
T ss_pred HHHHHHHHCC-----CCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHCCCC
T ss_conf 9999998649-----989999999999997--------489878999999976999