HHsearch alignment for GI: 254780270 and conserved domain: PRK04220

Probab=96.45  E-value=0.079  Score=32.68  Aligned_cols=99  Identities=19%  Similarity=0.266  Sum_probs=63.7

Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH-HHHHHHHHHHCHHHHHH
Q ss_conf             99852224788578888899999998753110257899999876540415876632210688-99877665201168999
Q gi|254780270|r  271 FEARISKIRLSKEAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDF-AIRILDQDHFGLEKVKE  349 (820)
Q Consensus       271 l~~Ki~~~~lp~e~~~~~~kEl~rL~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~-a~~iLd~~hyGl~~vK~  349 (820)
T Consensus        22 l~rslt~~gi~~~~A~~ia~ei~~~L~~~---------------------~~~~i~~~el~~~v~~~l~~~~~--~~~a~   78 (306)
T PRK04220         22 LARSLTAAGMKPDLAYEIASEIEEELKKE---------------------GITKITKEELRRRVYYKLIEKDY--EEIAE   78 (306)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHC---------------------CCEEECHHHHHHHHHHHHHHHCC--HHHHH
T ss_conf             99999980898889999999999999865---------------------77163599999999999998440--99999


Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf             9999999998424446735998605656502799999977088249
Q gi|254780270|r  350 RIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYV  395 (820)
Q Consensus       350 rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~  395 (820)
T Consensus        79 ---rY~~~r~~r~~~~pliILigGtsGvGKSTlA~~LA~rLgI~~v  121 (306)
T PRK04220         79 ---KYLLWRRIRKSKEPIIILIGGASGVGTSTIAFELASRLGIRSV  121 (306)
T ss_pred             ---HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             ---9999999853699879998589988789999999997098834