HHsearch alignment for GI: 254780270 and conserved domain: PRK05022
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional.
Probab=99.07 E-value=1.2e-08 Score=84.35 Aligned_cols=208 Identities=20% Similarity=0.323 Sum_probs=132.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCC---HHHHCCCCCC-CCCC---CCHHHHHHHHHCCC
Q ss_conf 44673599860565650279999997708---8249986188888---8883563200-1456---71289999983278
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATG---RQYVRMSLGGVYD---EADIRGHRRT-YIGS---MPGRIIQSLKRAKR 432 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~---r~f~~islgg~~d---~~~i~gh~~t-y~ga---~pg~ii~~l~~~~~ 432 (820)
T Consensus 207 ~sd~pVL-I~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l~EseLFGh~kGaFtGA~~~r~G~fe~------A 279 (510)
T PRK05022 207 ASDLNVL-ITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFEL------A 279 (510)
T ss_pred CCCCCEE-EECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEE------C
T ss_conf 8999889-88989813999999999668878998578889999856789986597778868865567881017------7
Q ss_pred CCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC-C-C-CC-----HHHCCCEEE
Q ss_conf 87399993315542311771155665540600168133201035236442799993486-5-5-44-----131172479
Q gi|254780270|r 433 SNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT-L-N-IP-----LPLMDRMEI 504 (820)
Q Consensus 433 ~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~-~-~-i~-----~~l~drme~ 504 (820)
T Consensus 280 ~gGTLfLDEI~~Lpl~~Q----~KLLrvLq---~g~iqrvG~~~~~~-vdvRIIAATnrdL~~~V~~G~FR~DLYyRLsv 351 (510)
T PRK05022 280 DGGTLFLDEIGELPLALQ----AKLLRVLQ---YGEIQRVGSDRSLR-VDVRVIAATNRDLREEVLAGRFRADLYHRLSV 351 (510)
T ss_pred CCCEEEEECHHHCCHHHH----HHHHHHHH---CCEEEECCCCCEEE-EEEEEEEECCCCHHHHHHCCCHHHHHHHHHHC
T ss_conf 898798757454999999----99999984---79588558994666-66899960783599998839638999987620
Q ss_pred E--EECCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9--8258786-899989998608989986257813132289999999731774102347888799998987654211785
Q gi|254780270|r 505 I--RIAGYTE-EEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSD 581 (820)
Q Consensus 505 i--~~~~y~~-~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~ 581 (820)
T Consensus 352 ~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~--~~~~ls~eAl~~-L~~Y~WPGNVRELenvIeRA~---lla~~~~~~ 425 (510)
T PRK05022 352 FPLPVPPLRERGDDVLLLAGYFLEQNRLRLGL--SSLRLSPDAQAA-LLQYDWPGNVRELEHVISRAA---LLARARRAG 425 (510)
T ss_pred CCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHH-HHCCCCCCHHHHHHHHHHHHH---HHHCCCCCC
T ss_conf 40348086555540999999999999998298--989888999999-970999978999999999999---971566677
Q ss_pred CEECCCHHHH
Q ss_conf 2012796786
Q gi|254780270|r 582 TTVSINENNL 591 (820)
Q Consensus 582 ~~~~i~~~~l 591 (820)
T Consensus 426 ~~~~i~~~~l 435 (510)
T PRK05022 426 DIVTLEAQHL 435 (510)
T ss_pred CCCCCCHHHC
T ss_conf 6442567664