HHsearch alignment for GI: 254780270 and conserved domain: PRK05342
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional.
Probab=99.62 E-value=3.7e-13 Score=118.48 Aligned_cols=254 Identities=24% Similarity=0.325 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC------C----C---CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 68899877665201168999999999999842------4----4---467359986056565027999999770882499
Q gi|254780270|r 330 LDFAIRILDQDHFGLEKVKERIIEYLAVQMRV------I----K---NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVR 396 (820)
Q Consensus 330 l~~a~~iLd~~hyGl~~vK~rile~lav~~~~------~----~---~~g~il~l~gppgvGKts~~~sia~al~r~f~~ 396 (820)
T Consensus 63 P~eI~~~LD~yVIGQ~~AKk~ls--VAvyNHykRi~~~~~~~~~vei~KsN-ILliGPTG~GKTlla~tLAk~l~vPF~i 139 (411)
T PRK05342 63 PKEIKAHLDQYVIGQERAKKVLS--VAVYNHYKRLRQNGSKSDDVELQKSN-ILLIGPTGSGKTLLAQTLARILNVPFAI 139 (411)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 79999986214028488889999--99999999986021335665213453-8998999977889999999986999899
Q ss_pred EECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCC------CEEEEEECHHHHHHH--C---CCCHH-----HHHHHH
Q ss_conf 8618888888835632001456712899999832788------739999331554231--1---77115-----566554
Q gi|254780270|r 397 MSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRS------NPLLLLDEIDKMGSD--L---RGDPS-----AALLEV 460 (820)
Q Consensus 397 islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~------npv~~ldeidk~~~~--~---~gdp~-----~allev 460 (820)
T Consensus 140 aDAT~lTE-a-------GYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLki 211 (411)
T PRK05342 140 ADATTLTE-A-------GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKI 211 (411)
T ss_pred EEECEECC-C-------CCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 86120012-6-------745607999999999982888998836828885023454247888887776512489999998
Q ss_pred CCCCCCC----CEEEEE--CCCCCCCCCEEEEEECCC-----------------------------------------C-
Q ss_conf 0600168----133201--035236442799993486-----------------------------------------5-
Q gi|254780270|r 461 LDPAQNS----SFVDHY--LEVEYDLSDVMFIMTANT-----------------------------------------L- 492 (820)
Q Consensus 461 ldp~qn~----~f~d~y--~~~~~dls~v~fi~tan~-----------------------------------------~- 492 (820)
T Consensus 212 iEGt~v~vp~~ggrkhp~~~~~~idT~nILFI~gGAF~GL~~II~~R~~~~~iGF~~~~~~~~~~~~~~~l~~v~p~DLi 291 (411)
T PRK05342 212 LEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKSGIGFGAEVKSKDEKDLGELLAQVEPEDLV 291 (411)
T ss_pred HCCCEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHH
T ss_conf 75871411888777787765167614717999115533589999863578876778876641100056787627987888
Q ss_pred C--CCHHHCCCEEEE-EECCCCHHHHHHHH---HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC-CCCCCHHHHHHHHH
Q ss_conf 5--441311724799-82587868999899---98608989986257813132289999999731-77410234788879
Q gi|254780270|r 493 N--IPLPLMDRMEII-RIAGYTEEEKLQIA---KNHLVKKVLTEHALKQEECCISDGVLLDIIRL-FTHEAGVRSFERAL 565 (820)
Q Consensus 493 ~--i~~~l~drme~i-~~~~y~~~ek~~i~---~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~-Yt~EaGvR~l~r~i 565 (820)
T Consensus 292 ~fGlIPEfiGRlPViv~L~~L~~~~L~~ILtePkNaLikQY~~LF~~dgV~L~Ft~~AL~~IA~~A~~~~tGARgLRsIl 371 (411)
T PRK05342 292 KFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDDALEAIAKKAIERKTGARGLRSIL 371 (411)
T ss_pred HCCCCHHHHCCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 73883776146640546244799999999658741599999999975496799868999999999998475745779999
Q ss_pred HHHHHHHHHHHHCCCC-CEECCCHHHHHHH
Q ss_conf 9998987654211785-2012796786753
Q gi|254780270|r 566 MKIARKAVTKIVKNSD-TTVSINENNLQDY 594 (820)
Q Consensus 566 ~~i~r~~~~~~~~~~~-~~~~i~~~~l~~~ 594 (820)
T Consensus 372 E~iLld~MFelPs~~~v~~v~It~~~V~~~ 401 (411)
T PRK05342 372 EEVLLDVMFELPSREDVEKVVITEEVVEGK 401 (411)
T ss_pred HHHHHHHHCCCCCCCCCCEEEECHHHHCCC
T ss_conf 999788754488989970999887997799