HHsearch alignment for GI: 254780270 and conserved domain: PRK05563
>PRK05563 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.41 E-value=1.1e-11 Score=107.39 Aligned_cols=213 Identities=19% Similarity=0.323 Sum_probs=143.7
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-------C------EEEEECCCCCCH
Q ss_conf 652011689999999999998424446735998605656502799999977088-------2------499861888888
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-------Q------YVRMSLGGVYDE 405 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-------~------f~~islgg~~d~ 405 (820)
T Consensus 16 ~dvvgQ~~v~~~L~n~-----i~~~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i~~g~~~Dv 90 (541)
T PRK05563 16 EDVVGQEHITTTLKNQ-----IINNRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKINEGLLMDV 90 (541)
T ss_pred HHHCCCHHHHHHHHHH-----HHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 6624849999999999-----98499320453038799589999999999957999888985751488999856898873
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHH--CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 883563200145671289999983--278873999933155423117711556655406001681332010352364427
Q gi|254780270|r 406 ADIRGHRRTYIGSMPGRIIQSLKR--AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDV 483 (820)
Q Consensus 406 ~~i~gh~~ty~ga~pg~ii~~l~~--~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v 483 (820)
T Consensus 91 ~Eidaas~~gvd~iR-~~~~~~~~~p~~~~~Kv~IiDEvhmls~~----a~nallKtlE-------------eP--p~~~ 150 (541)
T PRK05563 91 IEIDAASNNGVDDIR-EIIENVKYPPQEGKYKVYIMDEVHMLSQG----AVNAFLKTLE-------------EP--PSNV 150 (541)
T ss_pred EEECCCCCCCHHHHH-HHHHHCEECCCCCCEEEEEEECCCCCCHH----HHHHHHHHHH-------------CC--CCCC
T ss_conf 662444447889999-99976104876787059999772338999----9999999985-------------48--7775
Q ss_pred EEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 9999348655-441311724799825878689998999860898998625781313228999999973177410234788
Q gi|254780270|r 484 MFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFE 562 (820)
Q Consensus 484 ~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~ 562 (820)
T Consensus 151 ~Filatte~~ki~~tI~SRcq~f~f~~i~~~~i~~~-----L~~I~-----~~E~i~~~~~al~lIa~~--s~GsmRDAl 218 (541)
T PRK05563 151 IFILATTDPQKLPITILSRCQRFDFKRIKVKDIFKR-----LRKIV-----EEQGIFADDKSLNLIARM--SDGAMRDAL 218 (541)
T ss_pred EEEEECCCCCCCCHHHHHHEEEEEEEECCHHHHHHH-----HHHHH-----HHCCCCCCHHHHHHHHHH--CCCCHHHHH
T ss_conf 699976984427455674213577543899999999-----99999-----984999878999999974--599778899
Q ss_pred HHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCC
Q ss_conf 879999898765421178520127967867530520
Q gi|254780270|r 563 RALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVP 598 (820)
Q Consensus 563 r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~ 598 (820)
T Consensus 219 slLdQ~is-----~--~~---~~it~~~v~~~lG~~ 244 (541)
T PRK05563 219 SILDQAIS-----M--GD---GKVDYDDVVSMLGLV 244 (541)
T ss_pred HHHHHHHH-----H--CC---CCCCHHHHHHHHCCC
T ss_conf 99999998-----3--59---986699999996899