HHsearch alignment for GI: 254780270 and conserved domain: PRK05563

>PRK05563 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.41  E-value=1.1e-11  Score=107.39  Aligned_cols=213  Identities=19%  Similarity=0.323  Sum_probs=143.7

Q ss_pred             HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-------C------EEEEECCCCCCH
Q ss_conf             652011689999999999998424446735998605656502799999977088-------2------499861888888
Q gi|254780270|r  339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-------Q------YVRMSLGGVYDE  405 (820)
Q Consensus       339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-------~------f~~islgg~~d~  405 (820)
T Consensus        16 ~dvvgQ~~v~~~L~n~-----i~~~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i~~g~~~Dv   90 (541)
T PRK05563         16 EDVVGQEHITTTLKNQ-----IINNRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKINEGLLMDV   90 (541)
T ss_pred             HHHCCCHHHHHHHHHH-----HHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf             6624849999999999-----98499320453038799589999999999957999888985751488999856898873


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHHHH--CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf             883563200145671289999983--278873999933155423117711556655406001681332010352364427
Q gi|254780270|r  406 ADIRGHRRTYIGSMPGRIIQSLKR--AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDV  483 (820)
Q Consensus       406 ~~i~gh~~ty~ga~pg~ii~~l~~--~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v  483 (820)
T Consensus        91 ~Eidaas~~gvd~iR-~~~~~~~~~p~~~~~Kv~IiDEvhmls~~----a~nallKtlE-------------eP--p~~~  150 (541)
T PRK05563         91 IEIDAASNNGVDDIR-EIIENVKYPPQEGKYKVYIMDEVHMLSQG----AVNAFLKTLE-------------EP--PSNV  150 (541)
T ss_pred             EEECCCCCCCHHHHH-HHHHHCEECCCCCCEEEEEEECCCCCCHH----HHHHHHHHHH-------------CC--CCCC
T ss_conf             662444447889999-99976104876787059999772338999----9999999985-------------48--7775


Q ss_pred             EEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             9999348655-441311724799825878689998999860898998625781313228999999973177410234788
Q gi|254780270|r  484 MFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFE  562 (820)
Q Consensus       484 ~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~  562 (820)
T Consensus       151 ~Filatte~~ki~~tI~SRcq~f~f~~i~~~~i~~~-----L~~I~-----~~E~i~~~~~al~lIa~~--s~GsmRDAl  218 (541)
T PRK05563        151 IFILATTDPQKLPITILSRCQRFDFKRIKVKDIFKR-----LRKIV-----EEQGIFADDKSLNLIARM--SDGAMRDAL  218 (541)
T ss_pred             EEEEECCCCCCCCHHHHHHEEEEEEEECCHHHHHHH-----HHHHH-----HHCCCCCCHHHHHHHHHH--CCCCHHHHH
T ss_conf             699976984427455674213577543899999999-----99999-----984999878999999974--599778899


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCC
Q ss_conf             879999898765421178520127967867530520
Q gi|254780270|r  563 RALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVP  598 (820)
Q Consensus       563 r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~  598 (820)
T Consensus       219 slLdQ~is-----~--~~---~~it~~~v~~~lG~~  244 (541)
T PRK05563        219 SILDQAIS-----M--GD---GKVDYDDVVSMLGLV  244 (541)
T ss_pred             HHHHHHHH-----H--CC---CCCCHHHHHHHHCCC
T ss_conf             99999998-----3--59---986699999996899