HHsearch alignment for GI: 254780270 and conserved domain: PRK05642
>PRK05642 DNA replication initiation factor; Validated.
Probab=98.73 E-value=1e-06 Score=69.70 Aligned_cols=179 Identities=20% Similarity=0.350 Sum_probs=120.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH---HHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 673599860565650279999997---70882499861888888883563200145671289999983278873999933
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAK---ATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDE 441 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~---al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~lde 441 (820)
T Consensus 44 ~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~-------------~-~~~~~l~~~----d~l~IDD 105 (234)
T PRK05642 44 TESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG-------------P-ELLDNLEQY----ELVCIDD 105 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH-------------H-HHHHHHHHC----CEEEEEC
T ss_conf 788389988999988999999999998079967997899987544-------------9-998624227----9898936
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC----CCCC-HHHCCCE---EEEEECCCCHH
Q ss_conf 15542311771155665540600168133201035236442799993486----5544-1311724---79982587868
Q gi|254780270|r 442 IDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT----LNIP-LPLMDRM---EIIRIAGYTEE 513 (820)
Q Consensus 442 idk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~----~~i~-~~l~drm---e~i~~~~y~~~ 513 (820)
T Consensus 106 i~~i~g~~--~~e~~lF~l~N~~~~~-------------~~-~llits~~~P~~l~~~l~DL~SRl~~~~~~~i~~l~d~ 169 (234)
T PRK05642 106 LDVIAGKA--DWEEALFHLFNRLRDS-------------GR-RLLLAASKSPRELPVKLPDLKSRLTLALVFQMRGLSDE 169 (234)
T ss_pred HHHHCCCH--HHHHHHHHHHHHHHHC-------------CC-EEEEECCCCHHHHCCCHHHHHHHHHCCCEEEECCCCHH
T ss_conf 45546885--9999999999999983-------------99-59995787955523001679999957812751489989
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHH
Q ss_conf 99989998608989986257813132289999999731774102347888799998987654211785201279678675
Q gi|254780270|r 514 EKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQD 593 (820)
Q Consensus 514 ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~ 593 (820)
T Consensus 170 ~~~~iL~~~a-----~-----~rgi~l~~~v~~yl~~r~~R~--~~~L~~~l~~Ld~~sl~~-------kr~iTiplvk~ 230 (234)
T PRK05642 170 DKLRALQLRA-----S-----RRGLHLTDEVGHFILTRGTRS--MSALFDLLERLDQASLQA-------QRKLTIPFLKE 230 (234)
T ss_pred HHHHHHHHHH-----H-----HCCCCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHH-------CCCCCHHHHHH
T ss_conf 9999999997-----7-----546899989999999973588--999999999999999983-------89999999999
Q ss_pred HHC
Q ss_conf 305
Q gi|254780270|r 594 YLG 596 (820)
Q Consensus 594 ~lg 596 (820)
T Consensus 231 vLg 233 (234)
T PRK05642 231 TLG 233 (234)
T ss_pred HHC
T ss_conf 838