HHsearch alignment for GI: 254780270 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.72 E-value=0.00073 Score=48.06 Aligned_cols=129 Identities=26% Similarity=0.338 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 50467899985222478857888889999999875311025789999987654041587663221068899877665201
Q gi|254780270|r 264 GRDEISDFEARISKIRLSKEAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFG 343 (820)
Q Consensus 264 ~~~Ei~el~~Ki~~~~lp~e~~~~~~kEl~rL~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyG 343 (820)
T Consensus 150 ~~p~~~~l~~~L~~~Gvs~~la~~l~~~~---~---~~~----------------------------------------~ 183 (412)
T PRK05703 150 IPPEFAKLYKRLKESGLSPEIADKLLKLL---L---EDM----------------------------------------N 183 (412)
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHH---H---HCC----------------------------------------C
T ss_conf 88789999999998699999999999986---6---428----------------------------------------9
Q ss_pred HHHHHHHHHHHHHH----HHHCCCCCCCEEEEECCCCCCHHHHHHHHHH--HH--CC-CEEEEECCCCCC--------HH
Q ss_conf 16899999999999----9842444673599860565650279999997--70--88-249986188888--------88
Q gi|254780270|r 344 LEKVKERIIEYLAV----QMRVIKNKGLILCFVGPPGVGKTSLAQSIAK--AT--GR-QYVRMSLGGVYD--------EA 406 (820)
Q Consensus 344 l~~vK~rile~lav----~~~~~~~~g~il~l~gppgvGKts~~~sia~--al--~r-~f~~islgg~~d--------~~ 406 (820)
T Consensus 184 ~~~~~~~l~~~L~~~l~~~~~~~~~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya 263 (412)
T PRK05703 184 PREAWRYLLELLANMLPTRVEDILEQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYA 263 (412)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf 79999999999997578887665456736999888887567699999999999729981799983767777999999999
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEE
Q ss_conf 8356320014567128999998327887399993
Q gi|254780270|r 407 DIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLD 440 (820)
Q Consensus 407 ~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ld 440 (820)
T Consensus 264 ~ilgvp-~~v~~~~~~l~~al~~~~~~d-lILID 295 (412)
T PRK05703 264 KIMGIP-VKVAYDPKELAKALEQLANCD-LILID 295 (412)
T ss_pred HHCCCE-EEEECCHHHHHHHHHHHCCCC-EEEEE
T ss_conf 971973-798479999999998715899-79996