HHsearch alignment for GI: 254780270 and conserved domain: PRK05703

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.72  E-value=0.00073  Score=48.06  Aligned_cols=129  Identities=26%  Similarity=0.338  Sum_probs=64.4

Q ss_pred             CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             50467899985222478857888889999999875311025789999987654041587663221068899877665201
Q gi|254780270|r  264 GRDEISDFEARISKIRLSKEAREKALSELQKLRQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFG  343 (820)
Q Consensus       264 ~~~Ei~el~~Ki~~~~lp~e~~~~~~kEl~rL~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyG  343 (820)
T Consensus       150 ~~p~~~~l~~~L~~~Gvs~~la~~l~~~~---~---~~~----------------------------------------~  183 (412)
T PRK05703        150 IPPEFAKLYKRLKESGLSPEIADKLLKLL---L---EDM----------------------------------------N  183 (412)
T ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHHHH---H---HCC----------------------------------------C
T ss_conf             88789999999998699999999999986---6---428----------------------------------------9


Q ss_pred             HHHHHHHHHHHHHH----HHHCCCCCCCEEEEECCCCCCHHHHHHHHHH--HH--CC-CEEEEECCCCCC--------HH
Q ss_conf             16899999999999----9842444673599860565650279999997--70--88-249986188888--------88
Q gi|254780270|r  344 LEKVKERIIEYLAV----QMRVIKNKGLILCFVGPPGVGKTSLAQSIAK--AT--GR-QYVRMSLGGVYD--------EA  406 (820)
Q Consensus       344 l~~vK~rile~lav----~~~~~~~~g~il~l~gppgvGKts~~~sia~--al--~r-~f~~islgg~~d--------~~  406 (820)
T Consensus       184 ~~~~~~~l~~~L~~~l~~~~~~~~~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya  263 (412)
T PRK05703        184 PREAWRYLLELLANMLPTRVEDILEQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYA  263 (412)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf             79999999999997578887665456736999888887567699999999999729981799983767777999999999


Q ss_pred             HHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEE
Q ss_conf             8356320014567128999998327887399993
Q gi|254780270|r  407 DIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLD  440 (820)
Q Consensus       407 ~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ld  440 (820)
T Consensus       264 ~ilgvp-~~v~~~~~~l~~al~~~~~~d-lILID  295 (412)
T PRK05703        264 KIMGIP-VKVAYDPKELAKALEQLANCD-LILID  295 (412)
T ss_pred             HHCCCE-EEEECCHHHHHHHHHHHCCCC-EEEEE
T ss_conf             971973-798479999999998715899-79996