HHsearch alignment for GI: 254780270 and conserved domain: PRK05917
>PRK05917 DNA polymerase III subunit delta'; Validated.
Probab=98.33 E-value=3e-06 Score=66.09 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=80.0
Q ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHH--HHCCCCCCCCC--CCCH-----HHHHHHHHC
Q ss_conf 42444673599860565650279999997708824998618888888--83563200145--6712-----899999832
Q gi|254780270|r 360 RVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEA--DIRGHRRTYIG--SMPG-----RIIQSLKRA 430 (820)
Q Consensus 360 ~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~--~i~gh~~ty~g--a~pg-----~ii~~l~~~ 430 (820)
T Consensus 13 i~~~Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc~------~~p~~~~~i~~~~HPD~~~i~pe~k~~~~~Id~iR~l~~~ 86 (290)
T PRK05917 13 VRDQKVPSAILLHGQDLSNLSQYAYELASLILLE------SSPEAQYKISQKIHPDIHEFFPEGKGRLHSIETPRAIKKQ 86 (290)
T ss_pred HHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 9839966068768999865999999999998578------9961688987468998599615777887867899999999
Q ss_pred ------CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEE
Q ss_conf ------788739999331554231177115566554060016813320103523644279999348655-4413117247
Q gi|254780270|r 431 ------KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRME 503 (820)
Q Consensus 431 ------~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme 503 (820)
T Consensus 87 i~~~p~~g~~KV~IId~Ad~Mn~----~AaNALLKtLE-------------EPP--~~tvfILit~~~~~lLpTI~SRCQ 147 (290)
T PRK05917 87 IWIHPYEANYKIYIIHEADRMTL----DAISAFLKVLE-------------DPP--KHSVIILTSAKPQRLPPTIRSRSL 147 (290)
T ss_pred HCCCCCCCCCEEEEECCHHHHCH----HHHHHHHHHHC-------------CCC--CCEEEEEEECCHHHCCHHHHHCCC
T ss_conf 64186468826999756776389----99999999734-------------798--785999986992548237763351
Q ss_pred EEEECC
Q ss_conf 998258
Q gi|254780270|r 504 IIRIAG 509 (820)
Q Consensus 504 ~i~~~~ 509 (820)
T Consensus 148 ~I~i~~ 153 (290)
T PRK05917 148 SIHIPG 153 (290)
T ss_pred EEECCC
T ss_conf 167776