HHsearch alignment for GI: 254780270 and conserved domain: PRK06835

>PRK06835 DNA replication protein DnaC; Validated.
Probab=97.34  E-value=0.002  Score=44.82  Aligned_cols=90  Identities=20%  Similarity=0.238  Sum_probs=46.5

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECH
Q ss_conf             735998605656502799999977088---24998618888888835632001456712899999832788739999331
Q gi|254780270|r  366 GLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEI  442 (820)
Q Consensus       366 g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldei  442 (820)
T Consensus       183 ~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~--~~l~~~~~~~~~~-~~~~~~~l~~----~DLLIIDDL  255 (330)
T PRK06835        183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELI--ENLREIRFNNDND-APELEDLLIN----CDLLIIDDL  255 (330)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHH--HHHHHHHCCCCCC-HHHHHHHHHH----CCEEEEECC
T ss_conf             88669889999988999999999999879949996299999--9999975457644-8999999961----898997210


Q ss_pred             HHHHHHCCCCHHHHHHHHCCCC
Q ss_conf             5542311771155665540600
Q gi|254780270|r  443 DKMGSDLRGDPSAALLEVLDPA  464 (820)
Q Consensus       443 dk~~~~~~gdp~~allevldp~  464 (820)
T Consensus       256 G~E~~t--~~~~~~Lf~iIN~R  275 (330)
T PRK06835        256 GTESIT--EFSKTELFNLINKR  275 (330)
T ss_pred             CCCCCC--HHHHHHHHHHHHHH
T ss_conf             345588--68999999999999