HHsearch alignment for GI: 254780270 and conserved domain: PRK06835
>PRK06835 DNA replication protein DnaC; Validated.
Probab=97.34 E-value=0.002 Score=44.82 Aligned_cols=90 Identities=20% Similarity=0.238 Sum_probs=46.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECH
Q ss_conf 735998605656502799999977088---24998618888888835632001456712899999832788739999331
Q gi|254780270|r 366 GLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEI 442 (820)
Q Consensus 366 g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldei 442 (820)
T Consensus 183 ~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~--~~l~~~~~~~~~~-~~~~~~~l~~----~DLLIIDDL 255 (330)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELI--ENLREIRFNNDND-APELEDLLIN----CDLLIIDDL 255 (330)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHH--HHHHHHHCCCCCC-HHHHHHHHHH----CCEEEEECC
T ss_conf 88669889999988999999999999879949996299999--9999975457644-8999999961----898997210
Q ss_pred HHHHHHCCCCHHHHHHHHCCCC
Q ss_conf 5542311771155665540600
Q gi|254780270|r 443 DKMGSDLRGDPSAALLEVLDPA 464 (820)
Q Consensus 443 dk~~~~~~gdp~~allevldp~ 464 (820)
T Consensus 256 G~E~~t--~~~~~~Lf~iIN~R 275 (330)
T PRK06835 256 GTESIT--EFSKTELFNLINKR 275 (330)
T ss_pred CCCCCC--HHHHHHHHHHHHHH
T ss_conf 345588--68999999999999