HHsearch alignment for GI: 254780270 and conserved domain: PRK07399
>PRK07399 DNA polymerase III subunit delta'; Validated.
Probab=98.62 E-value=1.8e-06 Score=67.79 Aligned_cols=161 Identities=20% Similarity=0.256 Sum_probs=100.3
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-------EEEEECCCCC--------
Q ss_conf 6520116899999999999984244467359986056565027999999770882-------4998618888--------
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ-------YVRMSLGGVY-------- 403 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~-------f~~islgg~~-------- 403 (820)
T Consensus 4 ~~iiGq~~~~~~L~~ai-----~~~rl~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHPDl~~i~P~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAI-----EQNRIAPAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred CCCCCCHHHHHHHHHHH-----HCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEECC
T ss_conf 31259499999999999-----8599674487789998329999999999985789999766558751899977886056
Q ss_pred ----------CHHHHCCCCCCCCCCCCHHHHHHHHH------CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCC
Q ss_conf ----------88883563200145671289999983------27887399993315542311771155665540600168
Q gi|254780270|r 404 ----------DEADIRGHRRTYIGSMPGRIIQSLKR------AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNS 467 (820)
Q Consensus 404 ----------d~~~i~gh~~ty~ga~pg~ii~~l~~------~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~ 467 (820)
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m~~~----AaNaLLKtLE----- 149 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA----AANALLKTLE----- 149 (314)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHH----HHHHHHHHHC-----
T ss_conf 2003454557789876530268777879999999999731885688479998897871999----9999998614-----
Q ss_pred CEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 13320103523644279999348655-4413117247998258786899989998608
Q gi|254780270|r 468 SFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLV 524 (820)
Q Consensus 468 ~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~ 524 (820)
T Consensus 150 --------EP---~~~~fILit~~~~~lLpTI~SRCQ~i~F~~l~~~~i~~~L~~~~~ 196 (314)
T PRK07399 150 --------EP---GNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGD 196 (314)
T ss_pred --------CC---CCCEEEEEECCHHHCCHHHHCCCEEEECCCCCHHHHHHHHHHCCC
T ss_conf --------78---785699997993649146641875633899899999999997166